Citrus Sinensis ID: 015663

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARRN
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccccEEcccHHHHccccccEEEcccccccccccHHccccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHccccccccccccEEEEcccccccccEEEEEEEEEEccEEEEcEEcccEEEEEcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEHHHHHHHHHcccccHHHHHHHHHccccEEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEcccccEEEEcccccccccccccccccccccccccccEEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHcccccEEEEEcccccccccccccHHccccccEEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEcHccccccccccHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHcccccEEEcccccHHccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MWDLGIATLYYLDLSnnfltnieyfpptnmtqlnfdsnlTHKVLDMRmnnfngkiprkfvkscnltslnlngnrlegplppslvnchhlevlnvgnnqindnfpnwLEILPELQVLILRsnrfwgpigenttivpfpslriidlshneFTGVLLTGYLDNfkammhgnniSVEVDymtplnssnyYESIILTIKGIDIKMERILTIFMTIdlssnkfqggipeVVGKLNllkglnishnnltgdipsslrnltevesldlssnmlvghiptqltsLKYLSVLNLSynqfegpiprgsqfntfpndsyvgnsglcgfpllescnideapepvgstrfdeeedasswfdwKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSslgiarrn
Flexible Loop (DISEMBL)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIekyqsnkvrirvsslgiarrn
Low Complexity Region (SEG)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARRN
Disordered region (IsUnstruct)
*WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNID*****************SSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVS********
Disordered Region (DISOPRED)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH********DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLL**************************FDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARR*
Disordered Region (DISEMBL)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARRN
Disordered Region (DISPRO)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCN********************SWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLG*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.913	0.434	0.401	2e-67
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.632	0.203	0.355	3e-32
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.739	0.408	0.320	1e-29
Q9LRT1	1016	Probably inactive leucine	no	no	0.766	0.304	0.330	2e-28
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.575	0.185	0.336	6e-28
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.610	0.240	0.359	6e-27
O49318	1124	Probable leucine-rich rep	no	no	0.736	0.264	0.301	1e-26
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.744	0.289	0.308	2e-26
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.724	0.266	0.282	2e-26
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.821	0.283	0.283	3e-26

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 154/384 (40%), Positives = 221/384 (57%), Gaps = 16/384 (4%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           +++L +LDLSNN  +      P+ +   NF  ++  K L++  NNF+G +P  F K+  L
Sbjct: 466 LSSLGFLDLSNNLFSGS---IPSCIR--NFSGSI--KELNLGDNNFSGTLPDIFSKATEL 518

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            SL+++ N+LEG  P SL+NC  LE++NV +N+I D FP+WLE LP L VL LRSN+F+G
Sbjct: 519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYG 578

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD-YMTPL--NS 182
           P+      + F SLRIID+SHN F+G L   Y  N+K M     ++ E+D YMT     +
Sbjct: 579 PLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDM---TTLTEEMDQYMTEFWRYA 635

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
            +YY  + +  KG+D+  ERI   F  ID S NK  G IPE +G L  L+ LN+S N  T
Sbjct: 636 DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFT 695

Query: 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTF 302
             IP  L NLT++E+LD+S N L G IP  L +L +LS +N S+N  +GP+PRG+QF   
Sbjct: 696 SVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQ 755

Query: 303 PNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIG 362
              S++ N GL G  L + C    A  P      D  E   + F+W  A + YG G++ G
Sbjct: 756 KCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCG 813

Query: 363 LSVGYMVFGTGKPRWLVRMIEKYQ 386
           L +G+  + +    W      + Q
Sbjct: 814 LVIGHF-YTSHNHEWFTEKFGRKQ 836

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/281 (35%), Positives = 145/281 (51%), Gaps = 26/281 (9%)

Query: 44  LDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF 103
           L +  N F G+IPR F K   L+ L+++ N L G +P  L  C  L  +++ NN ++   
Sbjct: 605 LRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI 664

Query: 104 PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
           P WL  LP L  L L SN+F G +   T I    ++  + L  N   G            
Sbjct: 665 PTWLGKLPLLGELKLSSNKFVGSLP--TEIFSLTNILTLFLDGNSLNG------------ 710

Query: 164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE 223
                +I  E+  +  LN+ N  E+    + G        L+    + LS N   G IP 
Sbjct: 711 -----SIPQEIGNLQALNALNLEEN---QLSGPLPSTIGKLSKLFELRLSRNALTGEIPV 762

Query: 224 VVGKL-NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282
            +G+L +L   L++S+NN TG IPS++  L ++ESLDLS N LVG +P Q+  +K L  L
Sbjct: 763 EIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYL 822

Query: 283 NLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCN 323
           NLSYN  EG + +  QF+ +  D++VGN+GLCG P L  CN
Sbjct: 823 NLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSP-LSHCN 860

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 161/346 (46%), Gaps = 48/346 (13%)

Query: 30  MTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89
           +T+L F    + KVLD+  N+F G +P K     +LT++   GN+L G + P ++    L
Sbjct: 357 LTELEFSQLQSLKVLDLGNNSFTGALPDKIFSCKSLTAIRFAGNKLTGEISPQVLELESL 416

Query: 90  EVLNVGNNQINDNFPNWLEILP---ELQVLILRSNRFWGPIGENTTIVP---FPSLRI-- 141
             + + +N++  N    L IL    +L  LIL  N +   +      +    FP LRI  
Sbjct: 417 SFMGLSDNKLT-NITGALSILQGCRKLSTLILAKNFYDETVPSKEDFLSPDGFPKLRIFG 475

Query: 142 ----------------------IDLSHNEFTGVLLTGYL----DNFKAMMHGNNISVEVD 175
                                 +DLS N F G  + G+L    D F   +  N ++ E+ 
Sbjct: 476 VGACRLRGEIPAWLINLNKVEVMDLSMNRFVGS-IPGWLGTLPDLFYLDLSDNLLTGELP 534

Query: 176 ---------YMTPLNSSNYYE-SIILTIKGIDIKME--RILTIFMTIDLSSNKFQGGIPE 223
                        +  +NY E  I L    +    +  ++ +   TI +  N   G IP 
Sbjct: 535 KELFQLRALMSQKITENNYLELPIFLNPNNVTTNQQYNKLYSFPPTIYIRRNNLTGSIPV 594

Query: 224 VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283
            VG+L +L  L +  NNL+G IP  L NLT +E LDLS+N L G IP  LT+L +LS  N
Sbjct: 595 EVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSIPWSLTNLNFLSYFN 654

Query: 284 LSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPE 329
           ++ N  EGPIP   QF+TFP  ++ GN  LCG  LL SC    A E
Sbjct: 655 VANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCKPTRAKE 700

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 166/336 (49%), Gaps = 27/336 (8%)

Query: 6   IATLYYLDLSNNFLTNIEYFPP--TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
           + +L + D+SNN L+    FPP   +MT       L H  LD   N   GK+P       
Sbjct: 294 LKSLNHFDVSNNLLSG--DFPPWIGDMT------GLVH--LDFSSNELTGKLPSSISNLR 343

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           +L  LNL+ N+L G +P SL +C  L ++ +  N  + N P+    L  LQ +    N  
Sbjct: 344 SLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSGNIPDGFFDL-GLQEMDFSGNGL 402

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN--------NISVEVD 175
            G I   ++ + F SL  +DLSHN  TG +  G +  F  M + N         +  E++
Sbjct: 403 TGSIPRGSSRL-FESLIRLDLSHNSLTGSI-PGEVGLFIHMRYLNLSWNHFNTRVPPEIE 460

Query: 176 YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235
           ++  L   +   S ++     DI   + L I   + L  N   G IPE +G  + LK L+
Sbjct: 461 FLQNLTVLDLRNSALIGSVPADICESQSLQI---LQLDGNSLTGSIPEGIGNCSSLKLLS 517

Query: 236 ISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295
           +SHNNLTG IP SL NL E++ L L +N L G IP +L  L+ L ++N+S+N+  G +P 
Sbjct: 518 LSHNNLTGPIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPL 577

Query: 296 GSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPV 331
           G  F +    +  GN G+C  PLL        P+P+
Sbjct: 578 GDVFQSLDQSAIQGNLGICS-PLLRGPCTLNVPKPL 612

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 137/282 (48%), Gaps = 50/282 (17%)

Query: 43  VLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN 102
           +LDM  N   G IP + V    LT ++LN N L GP+PP L     L  L + +NQ  ++
Sbjct: 627 LLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVES 686

Query: 103 FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162
            P  L    +L VL L  N   G I +   I    +L +++L  N+F+G L         
Sbjct: 687 LPTELFNCTKLLVLSLDGNSLNGSIPQE--IGNLGALNVLNLDKNQFSGSL--------- 735

Query: 163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222
                         M  L  S  YE                      + LS N   G IP
Sbjct: 736 -----------PQAMGKL--SKLYE----------------------LRLSRNSLTGEIP 760

Query: 223 EVVGKL-NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281
             +G+L +L   L++S+NN TGDIPS++  L+++E+LDLS N L G +P  +  +K L  
Sbjct: 761 VEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGY 820

Query: 282 LNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCN 323
           LN+S+N   G + +  QF+ +P DS++GN+GLCG P L  CN
Sbjct: 821 LNVSFNNLGGKLKK--QFSRWPADSFLGNTGLCGSP-LSRCN 859

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/267 (35%), Positives = 136/267 (50%), Gaps = 21/267 (7%)

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L LN  + E P  PSL    +L+VL + + Q+    P WL   P LQ+L L  N+  G  
Sbjct: 407 LTLNFQKEELPSVPSL-QFKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSG-- 463

Query: 128 GENTTIVPF----PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
               TI P+     SL  +DLS+N F G +    L + ++++   N   E     P    
Sbjct: 464 ----TIPPWLGSLNSLFYLDLSNNTFIGEI-PHSLTSLQSLVSKENAVEEPSPDFP---- 514

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
            +++       G+        +    IDLS N   G I    G L  L  LN+ +NNL+G
Sbjct: 515 -FFKKKNTNAGGLQYNQPS--SFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSG 571

Query: 244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFP 303
           +IP++L  +T +E LDLS N L G+IP  L  L +LS  +++YN+  GPIP G QF TFP
Sbjct: 572 NIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFP 631

Query: 304 NDSYVGNSGLCGFPLLESCNI-DEAPE 329
           N S+ GN GLCG      C+I D++P 
Sbjct: 632 NSSFEGNQGLCG-EHASPCHITDQSPH 657

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 156/345 (45%), Gaps = 48/345 (13%)

Query: 7   ATLYYLDLSNNFLTNIEYFPP-----TNMTQLNFDSNL-----------THKVLDMRM-- 48
           + L+ +D S N L+     PP     +N+  LN  SN               +L +R+  
Sbjct: 421 SPLWVVDFSENQLSG--KIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVG 478

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
           N   G+ P +  K  NL+++ L+ NR  GPLPP +  C  L+ L++  NQ + N PN + 
Sbjct: 479 NRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEIS 538

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL--LTGYLDNFKAMMH 166
            L  L    + SN   GPI   + I     L+ +DLS N F G L    G L   + +  
Sbjct: 539 KLSNLVTFNVSSNSLTGPI--PSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLEILR- 595

Query: 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226
                        L+ + +  +I  TI          LT    + +  N F G IP  +G
Sbjct: 596 -------------LSENRFSGNIPFTIGN--------LTHLTELQMGGNLFSGSIPPQLG 634

Query: 227 KLNLLK-GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285
            L+ L+  +N+S+N+ +G+IP  + NL  +  L L++N L G IPT   +L  L   N S
Sbjct: 635 LLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFS 694

Query: 286 YNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEP 330
           YN   G +P    F      S++GN GLCG   L SC+   +  P
Sbjct: 695 YNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGH-LRSCDPSHSSWP 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 164/350 (46%), Gaps = 50/350 (14%)

Query: 7   ATLYYLDLSNNFLT---NIEYFPPTNMTQLNFDSN---------LTH----KVLDMRMNN 50
           + L  LDL NN L+   N+ +   T++  L+  SN         L H    K+L +  N 
Sbjct: 304 SKLRVLDLRNNSLSGSINLNFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAKNE 363

Query: 51  FNGKIPRKF-------------------------VKSC-NLTSLNLNGNRLEGPLPPSLV 84
           F GKIP  F                         ++ C NL++L L+ N +   +P ++ 
Sbjct: 364 FRGKIPDTFKNLQSLLFLSLSNNSFVDFSETMNVLQHCRNLSTLILSKNFIGEEIPNNVT 423

Query: 85  NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDL 144
              +L +L +GN  +    P+WL    +L+VL L  N F+G I     I    SL  ID 
Sbjct: 424 GFDNLAILALGNCGLRGQIPSWLLNCKKLEVLDLSWNHFYGTIPH--WIGKMESLFYIDF 481

Query: 145 SHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL 204
           S+N  TG +    +   K ++  N  + +   MT  +    Y     +  G+     ++ 
Sbjct: 482 SNNTLTGAIPVA-ITELKNLIRLNGTASQ---MTDSSGIPLYVKRNKSSNGL--PYNQVS 535

Query: 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNM 264
               +I L++N+  G I   +G+L  L  L++S NN TG IP S+  L  +E LDLS N 
Sbjct: 536 RFPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNH 595

Query: 265 LVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLC 314
           L G IP    SL +LS  +++YN+  G IP G QF +FP+ S+ GN GLC
Sbjct: 596 LYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLC 645

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 154/343 (44%), Gaps = 51/343 (14%)

Query: 30  MTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL 89
           ++ ++F    +  +LD+  N+F G+ P        +T++   GN+L G + P ++    L
Sbjct: 359 LSAIDFSRFQSLSILDLGNNSFTGEFPSTVYSCKMMTAMRFAGNKLTGQISPQVLELESL 418

Query: 90  EVLNVGNNQINDNFPNWLEIL---PELQVLILRSNRFWGPIGENTTIVP---FPSLRI-- 141
                 +N++  N    L IL    +L  LI+  N +   +  N   +    FPSL+I  
Sbjct: 419 SFFTFSDNKMT-NLTGALSILQGCKKLSTLIMAKNFYDETVPSNKDFLRSDGFPSLQIFG 477

Query: 142 ----------------------IDLSHNEFTGVLLTGYLDNFKAMMH--------GNNIS 171
                                 +DLS N F G +  G+L     + +           + 
Sbjct: 478 IGACRLTGEIPAWLIKLQRVEVMDLSMNRFVGTI-PGWLGTLPDLFYLDLSDNFLTGELP 536

Query: 172 VEVDYMTPLNSSNYYESIILTIKGIDI-----------KMERILTIFMTIDLSSNKFQGG 220
            E+  +  L S   Y++       + +           +  ++ ++  TI +  N   G 
Sbjct: 537 KELFQLRALMSQKAYDATERNYLELPVFVNPNNVTTNQQYNQLSSLPPTIYIKRNNLTGT 596

Query: 221 IPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 280
           IP  VG+L +L  L +  NN +G IP  L NLT +E LDLS+N L G IP  LT L +LS
Sbjct: 597 IPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLS 656

Query: 281 VLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCN 323
             N++ N   GPIP G+QF+TFP  ++ GN  LCG  LL SC+
Sbjct: 657 YFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSCD 699

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  119 bits (299), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 170/374 (45%), Gaps = 43/374 (11%)

Query: 44  LDMRMNNFNGKIPRKF-VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN 102
           L M  NN  G IP    VK  NL +L LN N L G +P S+  C ++  +++ +N++   
Sbjct: 455 LVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGK 514

Query: 103 FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162
            P+ +  L +L +L L +N   G +     +    SL  +DL+ N  TG L         
Sbjct: 515 IPSGIGNLSKLAILQLGNNSLSGNVPRQ--LGNCKSLIWLDLNSNNLTGDLPGELASQAG 572

Query: 163 AMMHGNNISVEVDYMTPLNSSNYYESI-ILTIKGIDI-KMERI--------------LTI 206
            +M G+    +  ++     ++   +  ++  +GI   ++ER+              +T+
Sbjct: 573 LVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTM 632

Query: 207 F--------MTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESL 258
           +        +  D+S N   G IP   G +  L+ LN+ HN +TG IP S   L  +  L
Sbjct: 633 YTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVL 692

Query: 259 DLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPL 318
           DLS N L G++P  L SL +LS L++S N   GPIP G Q  TFP   Y  NSGLCG P 
Sbjct: 693 DLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVP- 751

Query: 319 LESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGT-GKPRW 377
           L  C    AP    ++R   +            K    + ++ G++  +M F       +
Sbjct: 752 LRPCG--SAPRRPITSRIHAK------------KQTVATAVIAGIAFSFMCFVMLVMALY 797

Query: 378 LVRMIEKYQSNKVR 391
            VR ++K +  + +
Sbjct: 798 RVRKVQKKEQKREK 811

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
224116970	921	predicted protein [Populus trichocarpa]	0.937	0.410	0.573	1e-110
225462116	1001	PREDICTED: receptor-like protein 12-like	0.945	0.380	0.503	1e-103
296082718	745	unnamed protein product [Vitis vinifera]	0.918	0.496	0.535	2e-99
225455498	980	PREDICTED: receptor-like protein 12-like	0.945	0.388	0.526	2e-99
359493541	383	PREDICTED: receptor-like protein 12-like	0.930	0.979	0.534	3e-99
359493544	978	PREDICTED: receptor-like protein 12-like	0.942	0.388	0.517	1e-98
255568090	1014	serine/threonine-protein kinase bri1, pu	0.928	0.368	0.505	5e-98
359493539	1001	PREDICTED: receptor-like protein 12-like	0.952	0.383	0.522	8e-98
359493479	814	PREDICTED: receptor-like protein 12-like	0.913	0.452	0.533	1e-97
296089526	616	unnamed protein product [Vitis vinifera]	0.913	0.597	0.533	3e-97

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/396 (57%), Positives = 275/396 (69%), Gaps = 18/396 (4%)

Query: 2   WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQL--NFDSNLTHKVLDMRMNNFNGKIPRKF 59
           W   I T   ++LSNN L+        N+ Q   NF + L+  VL++R N+F+G IP  F
Sbjct: 537 WICNITTFQIINLSNNSLSG-------NIPQCLGNFSTELS--VLNLRSNSFHGTIPGSF 587

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
            +   + SL+LNGN LEG LP SL NC  LEVL++GNN IND+FP WL+ LP+LQVL+LR
Sbjct: 588 TEGNKIRSLDLNGNELEGSLPLSLANCKMLEVLDLGNNYINDSFPLWLQTLPKLQVLVLR 647

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
           SNR  G IG  T I PF SLRIIDLSHNEF G+L T Y+ NF+AM     +  EV     
Sbjct: 648 SNRLHGSIGNPTAISPFSSLRIIDLSHNEFIGLLPTQYIANFQAM---KKVDGEVKATPK 704

Query: 180 LNSSNYYE-SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
                YY+ SI+LT+KG +I MERILTIF TIDLSSN+F+G IP+ VG L+ L  LNIS 
Sbjct: 705 YIGEIYYQDSIVLTMKGTEIPMERILTIFTTIDLSSNRFEGQIPKEVGLLSSLIVLNISR 764

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQ 298
           N++TG IPSSL NLT +ESLDLSSN L G IP+QLT L +L+VLNLSYNQ  GPIP GSQ
Sbjct: 765 NSVTGQIPSSLGNLTALESLDLSSNGLGGGIPSQLTRLTFLAVLNLSYNQLVGPIPHGSQ 824

Query: 299 FNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSG 358
           F+TF NDSYVGN  LCGFPL   C+ D AP+P     F E+ED +S F+WKFA +GYG G
Sbjct: 825 FDTFQNDSYVGNLRLCGFPLSVKCSGDVAPQP---PPFQEKEDPASLFNWKFAMIGYGCG 881

Query: 359 LVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRV 394
           LVIGLSVGY+VF TGKP+W VR +E  Q   +R R 
Sbjct: 882 LVIGLSVGYIVFTTGKPQWFVRKVEVEQKKWLRRRT 917

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/427 (50%), Positives = 265/427 (62%), Gaps = 46/427 (10%)

Query: 2   WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-------------------- 41
           W++G  TL Y +LS N LT  E FP  NM  L+  SNL                      
Sbjct: 568 WNMGTETLSYFNLSQNLLTRFERFPWKNMLFLDLHSNLLQGPLPSLICEMSYISVLDFSN 627

Query: 42  ------------------KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83
                              VLD+RMN  +G IP  F K   + +L  NGN+LEGPLP SL
Sbjct: 628 NNLSGLIPQCLGNFSESLSVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSL 687

Query: 84  VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID 143
           +NC  L+VL++GNN+IND FP WLE LPELQVLILRSNRF G I  +    PFP LRI+D
Sbjct: 688 INCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMD 747

Query: 144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI 203
           LS N+F+G L   YL NFKAMM+     +++ YM       Y +SI+ TIKG D +   I
Sbjct: 748 LSRNDFSGSLPEMYLKNFKAMMNVTEDKMKLKYM---GEYYYRDSIMGTIKGFDFEF-VI 803

Query: 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN 263
           L+ F TIDLSSN+FQG I + +G L+ L+ LN+SHNNLTG IPSSL NL  +ESLDLSSN
Sbjct: 804 LSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHIPSSLGNLMVLESLDLSSN 863

Query: 264 MLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCN 323
            L G IP +LTSL +L VLNLS N   G IPRG+QF+TF N+SY GN GLCG PL + C 
Sbjct: 864 KLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANNSYSGNIGLCGLPLSKKCV 923

Query: 324 IDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMIE 383
           +DEAP+P      +EE ++ + FDWK   MGYG GLV+GL +G +VF T KP+W V MIE
Sbjct: 924 VDEAPQPPK----EEEVESDTGFDWKVILMGYGCGLVVGLFMGCLVFLTRKPKWFVTMIE 979

Query: 384 KYQSNKV 390
             +  KV
Sbjct: 980 GDRHKKV 986

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082718|emb|CBI21723.3| unnamed protein product [Vitis vinifera]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/385 (53%), Positives = 259/385 (67%), Gaps = 15/385 (3%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           ++ +  LD SNN   N+    P  +   NF  +L+  VLD+RMN  +G IP  F K   +
Sbjct: 361 MSYISVLDFSNN---NLSGLIPQCLG--NFSESLS--VLDLRMNQLHGNIPETFSKGNFI 413

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L  NGN+LEGPLP SL+NC  L+VL++GNN+IND FP WLE LPELQVLILRSNRF G
Sbjct: 414 RNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYWLETLPELQVLILRSNRFHG 473

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
            I  +    PFP LRI+DLS N+F+G L   YL NFKAMM+     +++ YM       Y
Sbjct: 474 HISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMNVTEDKMKLKYM---GEYYY 530

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245
            +SI+ TIKG D +   IL+ F TIDLSSN+FQG I + +G L+ L+ LN+SHNNLTG I
Sbjct: 531 RDSIMGTIKGFDFEFV-ILSTFTTIDLSSNRFQGEILDFIGSLSSLRELNLSHNNLTGHI 589

Query: 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPND 305
           PSSL NL  +ESLDLSSN L G IP +LTSL +L VLNLS N   G IPRG+QF+TF N+
Sbjct: 590 PSSLGNLMVLESLDLSSNKLSGRIPRELTSLTFLEVLNLSKNHLTGVIPRGNQFDTFANN 649

Query: 306 SYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSV 365
           SY GN GLCG PL + C +DEAP+P      +EE ++ + FDWK   MGYG GLV+GL +
Sbjct: 650 SYSGNIGLCGLPLSKKCVVDEAPQPPK----EEEVESDTGFDWKVILMGYGCGLVVGLFM 705

Query: 366 GYMVFGTGKPRWLVRMIEKYQSNKV 390
           G +VF T KP+W V MIE  +  KV
Sbjct: 706 GCLVFLTRKPKWFVTMIEGDRHKKV 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 212/403 (52%), Positives = 272/403 (67%), Gaps = 22/403 (5%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           ++++  LDLS+N   N+    P  +   NF  +L+  VL++R N F+G IP+ F+K   +
Sbjct: 595 VSSIRVLDLSSN---NLSGMLPHCLG--NFSKDLS--VLNLRRNRFHGTIPQSFLKGNVI 647

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L+ N NRLEG +P SL+ C  LEVLN+GNN+IND FP+WL  LPELQVL+LRSN F G
Sbjct: 648 RNLDFNDNRLEGLVPRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHG 707

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
            IG +    PF SLRIIDL+HN+F G L   YL + K  M+ +  ++   YM      NY
Sbjct: 708 HIGCSKLKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYM----GGNY 763

Query: 186 YE-SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244
           YE S+++TIKG++I+  +IL  F TIDLSSNKFQG IP+ +G LN L+GLN+SHNNLTG 
Sbjct: 764 YEDSVMVTIKGLEIEFVKILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGH 823

Query: 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPN 304
           IPSS  NL  +ESLDLSSN L+G IP QLTSL +L VLNLS N   G IP+G+QF+TF N
Sbjct: 824 IPSSFGNLKLLESLDLSSNKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGN 883

Query: 305 DSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDA--SSWFDWKFAKMGYGSGLVIG 362
           DSY GNS LCGFPL + C  DE PEP       +EEDA   + FDWKF  +GYG GLV G
Sbjct: 884 DSYNGNSELCGFPLSKKCIADETPEP------SKEEDAEFENKFDWKFMLVGYGCGLVYG 937

Query: 363 LSVGYMVFGTGKPRWLVRMIEKYQSNKVR--IRVSSLGIARRN 403
           LS+G ++F  GKP+W V +IE+    K+R   R +    ARRN
Sbjct: 938 LSLGGIIFLIGKPKWFVSIIEENIHKKIRRCKRSTCRQGARRN 980

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493541|ref|XP_003634623.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 209/391 (53%), Positives = 263/391 (67%), Gaps = 16/391 (4%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
           LDLSNN   N+    P  +   NF  +L+  VL++R N F+G IP+ F+K   + +L+ N
Sbjct: 4   LDLSNN---NLSGMLPHCLG--NFSKDLS--VLNLRRNRFHGIIPQTFLKDNAIRNLDFN 56

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
            N+LEG +P SL+ C  LEVL++GNN+IND FP+WL  LPELQVL+LRSN F G IG + 
Sbjct: 57  DNQLEGSVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSK 116

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191
              PF SLRIIDL+HN+F G L   YL + KA M+ +  ++   YM     S Y +S+++
Sbjct: 117 IKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKATMNVDERNMTRKYM---GDSYYQDSVMV 173

Query: 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN 251
           TIKG++I+  +IL  F TIDLSSNKFQG IP+ +G LN L+GLN+SHNNL G IPSS  N
Sbjct: 174 TIKGLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLAGHIPSSFGN 233

Query: 252 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS 311
           L  +ESLDLSSN L+G IP +LTSL +L VLNLS N   G IPRG+QF+TF NDSY  NS
Sbjct: 234 LKLLESLDLSSNKLIGIIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFDTFGNDSYNENS 293

Query: 312 GLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFG 371
           GLCGFPL + C IDE PE    T  D E D    FDWK   MGYG GL+IGLS+G ++F 
Sbjct: 294 GLCGFPLSKKCIIDETPESSKET--DAEFDGG--FDWKITLMGYGCGLIIGLSLGCLIFL 349

Query: 372 TGKPRWLVRMIEKYQSNKVRIRVSSLGIARR 402
           TGKP+WL  M+E+    K  I  S  G  RR
Sbjct: 350 TGKPKWLTTMVEENIHKK--ITRSKKGTCRR 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/396 (51%), Positives = 263/396 (66%), Gaps = 16/396 (4%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           +++   DLSNN L+ +      N ++  F       VL++R N F+G IP+ F+K   + 
Sbjct: 594 SSMRIFDLSNNNLSGVLPHCLGNFSKDLF-------VLNLRRNQFHGIIPQTFLKGNAIR 646

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           +L+ N N+LEGP+P SL+ C  LEVL++GNN+IND FP+WL  LPELQVL+LRSN F G 
Sbjct: 647 NLDFNDNQLEGPVPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGH 706

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
           IG +    PF SLRIIDL+HN+F G L   YL + KA+M+ +  ++   YM       Y 
Sbjct: 707 IGRSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNIDEGNMTRKYM---GEEYYQ 763

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246
           +SI++TIK ++I+  +IL  F TIDLSSNKFQG IP+ +G LN L+GLN+SHNNL G IP
Sbjct: 764 DSIVVTIKRLEIEFVKILNTFTTIDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLAGHIP 823

Query: 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDS 306
           SS  NL  +ESLDLSSN L+G IP +LTSL +L VLNLS N   G IP+G+QF+TF NDS
Sbjct: 824 SSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPQGNQFDTFGNDS 883

Query: 307 YVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVG 366
           Y  NSGLCGFPL + C IDE PE    T  D E D    FDWK   MGYG GL+IGLS+G
Sbjct: 884 YNENSGLCGFPLSKKCIIDETPESSKET--DAEFDGG--FDWKITLMGYGCGLIIGLSLG 939

Query: 367 YMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGIARR 402
            ++F TGKP+WL  M+E+    K  I  S  G  RR
Sbjct: 940 CLIFLTGKPKWLTTMVEENIHKK--ITRSKKGTCRR 973

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568090|ref|XP_002525021.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223535683|gb|EEF37348.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 196/388 (50%), Positives = 257/388 (66%), Gaps = 14/388 (3%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           + ++  LDLSNN  + +   P      +N+       +LD+R NNF+GKIP  F  S +L
Sbjct: 616 LGSIQVLDLSNNGFSGL--IPKCLGIMMNW-----LVILDLRNNNFSGKIPEVFGNSGSL 668

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             LNL+GN  EGPLPPSL NC  L +L+ GNN I D FP+WLE LP L++LILRSN F G
Sbjct: 669 VYLNLHGNNFEGPLPPSLGNCSGLRILDFGNNNIRDTFPHWLEALPNLEILILRSNSFHG 728

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
            +G+ +   PFPSL+I+DLSHN FTG +    + N K++++ +  +   +Y+        
Sbjct: 729 EVGDPSVDHPFPSLQILDLSHNHFTGFVPIKLMQNLKSVVYVDKDANLPEYVGDKLFVGR 788

Query: 186 YES-------IILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           Y+        I L IKG  +++ +ILTI   +D SSN+F+G IPE +G L  L  LN SH
Sbjct: 789 YQYFLVDAPLISLIIKGWGVELRKILTILTVVDCSSNEFRGEIPEEIGMLKSLVVLNFSH 848

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQ 298
           N+LTG IP S  NLT +ESLDLSSN LVG IP+QLT L +L+VLNL++NQ +G IP+G Q
Sbjct: 849 NSLTGRIPLSFANLTNMESLDLSSNKLVGEIPSQLTLLSFLAVLNLTFNQLKGQIPQGKQ 908

Query: 299 FNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSG 358
           FNTF NDSYVGN GLCGFPL + C+  E P+   S    EEED+  WFDWKFA MGYG G
Sbjct: 909 FNTFANDSYVGNLGLCGFPLSQKCSSGEPPQLSPSPIPHEEEDSQGWFDWKFALMGYGCG 968

Query: 359 LVIGLSVGYMVFGTGKPRWLVRMIEKYQ 386
           +V GLS+GY+V  T KP+W+VR+IE+ Q
Sbjct: 969 MVFGLSMGYIVLATRKPQWIVRIIEERQ 996

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  363 bits (932), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 209/400 (52%), Positives = 267/400 (66%), Gaps = 16/400 (4%)

Query: 6    IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
            ++++  LDLS+N   N+    P  +   NF  +L+  VL++R N F+G IP+ F+K   +
Sbjct: 616  VSSMGVLDLSSN---NLSGMLPHCLG--NFSKDLS--VLNLRRNRFHGTIPQTFLKGNAI 668

Query: 66   TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             +L+ N N+LEG +P SL+    LEVL++GNN+IND FP+WL  LPELQVL+LRSN F G
Sbjct: 669  RNLDFNDNQLEGLVPRSLIIYRKLEVLDLGNNKINDTFPHWLRTLPELQVLVLRSNSFHG 728

Query: 126  PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
             IG +    PF SLRIIDL+HN+F G L   YL + KA+M+ +  ++   YM       Y
Sbjct: 729  HIGFSKIKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKAIMNIDEGNMARKYM---GEYYY 785

Query: 186  YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245
             +SI +T KG+D+++ +IL  F T+DLSSNKFQG IP+ +G LN L+GLN+SHNNLTG I
Sbjct: 786  QDSITVTTKGLDVELVKILNTFTTVDLSSNKFQGEIPKSIGNLNSLRGLNLSHNNLTGLI 845

Query: 246  PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPND 305
            PSS  NL  +ESLDLSSN L+G IP QLTSL +L VLNLS N   G IPRG+QF+TF ND
Sbjct: 846  PSSFGNLKSLESLDLSSNELIGSIPQQLTSLTFLEVLNLSQNHLTGFIPRGNQFDTFGND 905

Query: 306  SYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSV 365
            SY  NSGLCGFPL + C  DE PEP  S   D + D    FDWK   MGYG GLVIGLS+
Sbjct: 906  SYNENSGLCGFPLSKKCIADETPEP--SKEADAKFDGG--FDWKITLMGYGCGLVIGLSL 961

Query: 366  GYMVFGTGKPRWLVRMIEKYQSNKVRIRVSSLGI--ARRN 403
            G +VF TGKP+W V +IE     K+R    S     ARRN
Sbjct: 962  GCLVFLTGKPKWFVWIIEDNIHKKIRRSKMSTCKQGARRN 1001

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493479|ref|XP_003634609.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 206/386 (53%), Positives = 261/386 (67%), Gaps = 18/386 (4%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           + ++  LDLSNN   N+    P  +   NF  +L+  VL+++ N F+G IP+ F+K   +
Sbjct: 429 VHSIGVLDLSNN---NLSGRLPHCLG--NFSKDLS--VLNLQGNRFHGTIPQTFLKGNVI 481

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L+ NGN+LEG +P SL+ C  LEVL++GNN+IND FP+WLE LP+LQVL+LRSN F G
Sbjct: 482 RNLDFNGNQLEGLVPRSLIICRELEVLDLGNNKINDTFPHWLETLPKLQVLVLRSNSFHG 541

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
            IG +    PF SLRIIDL+ N+F G L   YL + KA+M+ +   +   YM       Y
Sbjct: 542 HIGFSKIKSPFMSLRIIDLARNDFEGDLPEMYLRSLKAIMNVDEGKMTRKYM---GDHYY 598

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245
            +SI++TIKG++I++ +IL  F TIDLSSNKFQG IPE +G LN L+ LN+SHNNL G I
Sbjct: 599 QDSIMVTIKGLEIELVKILNTFTTIDLSSNKFQGEIPESIGNLNSLRELNLSHNNLVGHI 658

Query: 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPND 305
           PSS  NL  +ESLDLSSN L+G IP +LTSL +L VLNLS N   G IPRG+QF TF ND
Sbjct: 659 PSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFETFGND 718

Query: 306 SYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDA--SSWFDWKFAKMGYGSGLVIGL 363
           SY GNSGLCGFPL + C  DE  EP       +E DA   S FDWK   MGYG GLVIGL
Sbjct: 719 SYNGNSGLCGFPLSKKCTTDETLEP------SKEADAEFESGFDWKITLMGYGCGLVIGL 772

Query: 364 SVGYMVFGTGKPRWLVRMIEKYQSNK 389
           S+G  +F TGKP W VR+IE+   NK
Sbjct: 773 SLGCFIFLTGKPEWFVRIIEENLHNK 798

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089526|emb|CBI39345.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 206/386 (53%), Positives = 261/386 (67%), Gaps = 18/386 (4%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           + ++  LDLSNN   N+    P  +   NF  +L+  VL+++ N F+G IP+ F+K   +
Sbjct: 231 VHSIGVLDLSNN---NLSGRLPHCLG--NFSKDLS--VLNLQGNRFHGTIPQTFLKGNVI 283

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L+ NGN+LEG +P SL+ C  LEVL++GNN+IND FP+WLE LP+LQVL+LRSN F G
Sbjct: 284 RNLDFNGNQLEGLVPRSLIICRELEVLDLGNNKINDTFPHWLETLPKLQVLVLRSNSFHG 343

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
            IG +    PF SLRIIDL+ N+F G L   YL + KA+M+ +   +   YM       Y
Sbjct: 344 HIGFSKIKSPFMSLRIIDLARNDFEGDLPEMYLRSLKAIMNVDEGKMTRKYM---GDHYY 400

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245
            +SI++TIKG++I++ +IL  F TIDLSSNKFQG IPE +G LN L+ LN+SHNNL G I
Sbjct: 401 QDSIMVTIKGLEIELVKILNTFTTIDLSSNKFQGEIPESIGNLNSLRELNLSHNNLVGHI 460

Query: 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPND 305
           PSS  NL  +ESLDLSSN L+G IP +LTSL +L VLNLS N   G IPRG+QF TF ND
Sbjct: 461 PSSFGNLKLLESLDLSSNKLIGRIPQELTSLTFLEVLNLSQNHLTGFIPRGNQFETFGND 520

Query: 306 SYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDA--SSWFDWKFAKMGYGSGLVIGL 363
           SY GNSGLCGFPL + C  DE  EP       +E DA   S FDWK   MGYG GLVIGL
Sbjct: 521 SYNGNSGLCGFPLSKKCTTDETLEP------SKEADAEFESGFDWKITLMGYGCGLVIGL 574

Query: 364 SVGYMVFGTGKPRWLVRMIEKYQSNK 389
           S+G  +F TGKP W VR+IE+   NK
Sbjct: 575 SLGCFIFLTGKPEWFVRIIEENLHNK 600

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.937	0.370	0.419	9.3e-70
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.900	0.407	0.423	1.1e-69
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.848	0.509	0.420	4.9e-69
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.905	0.417	0.417	7.2e-68
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.878	0.601	0.415	9.2e-68
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.905	0.398	0.411	1.2e-67
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.930	0.377	0.409	3.7e-67
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.935	0.480	0.395	4e-67
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.913	0.434	0.401	6.5e-67
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.898	0.409	0.407	8.2e-67

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 9.3e-70, P = 9.3e-70
 Identities = 167/398 (41%), Positives = 242/398 (60%)

Query:     5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
             G+++L  LDLSNN L  ++ +   T M+ L+ D       LD+R N+ +G +P  F+ + 
Sbjct:   633 GLSSLEILDLSNNNLNGSLPWCLETLMSSLS-D-------LDLRNNSLSGSLPEIFMNAT 684

Query:    64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
              L SL+++ NR+EG LP SL  C  LEVLNVG+N+IND FP  L  L +LQVL+L SN+F
Sbjct:   685 KLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKF 744

Query:   124 WGPIGENTTI-VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM-TPL- 180
              G +     +   FP L+IID+SHN+F G+L + Y  N+ AM    + ++E +Y+  P  
Sbjct:   745 HGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEYIQNPSV 804

Query:   181 --NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
               +S  YY S++L  KG+ ++MER+LTI+  IDLS N+  G IP+ +G L  L+ LN+S 
Sbjct:   805 YGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSS 864

Query:   239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQ 298
             N  TG IPSSL NL  +ESLD+S N + G IP +L +L  L+ +N+S+NQ  G IP+G+Q
Sbjct:   865 NGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQ 924

Query:   299 FNTFPNDSYVGNSGLCGFPLLES-C-NIDEA-PEPVGSTRFDEEEDASSWFDWKFAKMGY 355
             F      SY GN GL G P LE+ C +I E+ P         EEE+  S F W  A +G+
Sbjct:   925 FQRQKCSSYEGNPGLNG-PSLENVCGHIKESTPTQTEPLETKEEEEEES-FSWIAAGLGF 982

Query:   356 GSGLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIR 393
               G+V GL++GY+V    K +W ++   + +    R R
Sbjct:   983 APGVVFGLAMGYIVVSY-KHQWFMKTFGRSKQQNTRTR 1019

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 163/385 (42%), Positives = 231/385 (60%)

Query:     7 ATLYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
             ++L  LDLS NNF   I   PP         SNL +  L +R NN  G IP K+     L
Sbjct:   507 SSLDVLDLSYNNFSGQI---PPCL-------SNLLY--LKLRKNNLEGSIPDKYYVDTPL 554

Query:    66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
              S ++  NRL G LP SL+NC  L+ L+V +N I D FP +L+ LP+LQVL+L SN F+G
Sbjct:   555 RSFDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFYLKALPKLQVLLLSSNEFYG 614

Query:   126 PIGE-NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN--ISVEVDYMTPLNS 182
             P+   N   + FP LRI++++ N+ TG L   +  N+KA  H  N  + + + Y   +  
Sbjct:   615 PLSPPNQGPLGFPELRILEIAGNKLTGSLPPDFFVNWKASSHTMNEDLGLYMVYSKVIFG 674

Query:   183 S---NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
             +    YYE+I L  KG+ ++ E +LT   TIDLS N+ +G IPE +G L  L  LN+S+N
Sbjct:   675 NYHLTYYETIDLRYKGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALNLSNN 734

Query:   240 NLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQF 299
               TG IP SL NL ++ESLDLSSN L G IP  L +L +L+ +N+S+NQ  G IP+G+Q 
Sbjct:   735 AFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQI 794

Query:   300 NTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEE-EDASSWFDWKFAKMGYGSG 358
                P  S+ GN+GLCGFPL ESC    AP P    + +EE E+     +WK   +GYG G
Sbjct:   795 TGQPKSSFEGNAGLCGFPLQESCFGTNAP-PAQKPKEEEEAEEDEQELNWKAVAIGYGVG 853

Query:   359 LVIGLSVGYMVFGTGKPRWLVRMIE 383
             +++GL++  ++  + KP WLV +++
Sbjct:   854 VLLGLAIAQLI-ASYKPEWLVCLVK 877

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 148/352 (42%), Positives = 213/352 (60%)

Query:    37 SNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN 96
             SN+T   +++R NN  G IP  F+   ++ +L++  NRL G LP SL+NC  LE L+V N
Sbjct:   317 SNVTF--VNLRKNNLEGTIPETFIVGSSIRTLDVGYNRLTGKLPRSLLNCSSLEFLSVDN 374

Query:    97 NQINDNFPNWLEILPELQVLILRSNRFWGPIGE-NTTIVPFPSLRIIDLSHNEFTGVLLT 155
             N+I D FP WL+ LP+LQVL L SN+F+GPI   +   + FP LRI+++S N+FTG L +
Sbjct:   375 NRIKDTFPFWLKALPKLQVLTLSSNKFYGPISPPHQGPLGFPELRILEISDNKFTGSLSS 434

Query:   156 GYLDNFKAM--MHGNNISVEVDY-MTPLNSSNY--YESIILTIKGIDIKMERILTIFMTI 210
              Y +N+KA   M    + + + Y   P     Y   + I L  KG++++  R+LT +  I
Sbjct:   435 RYFENWKASSAMMNEYVGLYMVYEKNPYGVVVYTFLDRIDLKYKGLNMEQARVLTSYSAI 494

Query:   211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIP 270
             D S N  +G IPE +G L  L  LN+S+N  TG IP SL NL E++SLD+S N L G IP
Sbjct:   495 DFSRNLLEGNIPESIGLLKALIALNLSNNAFTGHIPQSLANLKELQSLDMSRNQLSGTIP 554

Query:   271 TQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEP 330
               L  L +L+ +++S+NQ +G IP+G+Q       S+ GN GLCG PL E C  D +  P
Sbjct:   555 NGLKQLSFLAYISVSHNQLKGEIPQGTQITGQLKSSFEGNVGLCGLPLEERC-FDNSASP 613

Query:   331 VGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGLSVGYMVFGTGKPRWLVRMI 382
                 + DEEE+      WK   MGYG GL++G ++ Y++  + KP WL ++I
Sbjct:   614 TQHHKQDEEEEEEQVLHWKAVAMGYGPGLLVGFAIAYVI-ASYKPEWLTKII 664

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 163/390 (41%), Positives = 227/390 (58%)

Query:     6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
             + +L  LDLSNN  +     PP       F S L+   L++R N  +G +P+  +KS  L
Sbjct:   502 LRSLIILDLSNNNFSGA--IPPCVG---KFKSTLSD--LNLRRNRLSGSLPKTIIKS--L 552

Query:    66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
              SL+++ N LEG LP SL++   LEVLNV +N+IND FP WL  L +LQVL+LRSN F G
Sbjct:   553 RSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHG 612

Query:   126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM--MHGNNISVEVDYMTPLNSS 183
              I +      FP LRIID+S N F G L +     +  M  +  N       YM    S 
Sbjct:   613 RIHKTR----FPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYM---GSG 665

Query:   184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
              Y++S++L  KG+++++ RIL I+  +D S NKF+G IP  +G L  L  LN+S N  TG
Sbjct:   666 YYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTG 725

Query:   244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFP 303
              IPSS+ NL E+ESLD+S N L G IP +L +L YL+ +N S+NQ  G +P G+QF T  
Sbjct:   726 HIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQS 785

Query:   304 NDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIGL 363
               S+  N GLCG PL E C +   P P G +   E E   SW     A +G+  G+V+GL
Sbjct:   786 ASSFEENLGLCGRPL-EECRVVHEPTPSGESETLESEQVLSWIA---AAIGFTPGIVLGL 841

Query:   364 SVGYMVFGTGKPRWLVRMIEKYQSNKVRIR 393
             ++G++V  + KPRW  +++  Y +N  R R
Sbjct:   842 TIGHIVLSS-KPRWFFKVL--YINNSRRRR 868

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 157/378 (41%), Positives = 227/378 (60%)

Query:     8 TLYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
             +L  LDLS NNF  +I   PP          N T  ++++R N   G IP +F       
Sbjct:   218 SLDVLDLSYNNFTGSI---PPCM-------GNFT--IVNLRKNKLEGNIPDEFYSGALTQ 265

Query:    67 SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
             +L++  N+L G LP SL+NC  +  L+V +N+IND+FP WL+ LP L+VL LRSN F GP
Sbjct:   266 TLDVGYNQLTGELPRSLLNCSFIRFLSVDHNRINDSFPLWLKALPNLKVLTLRSNSFHGP 325

Query:   127 IG--ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN 184
             +   ++ + + FP L+I+++SHN FTG L T Y  N+ ++        E  YM   +S  
Sbjct:   326 MSPPDDQSSLAFPKLQILEISHNRFTGSLPTNYFANW-SVKSLKMYDEERLYMGDYSSDR 384

Query:   185 Y-YESII-LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
             + YE  + L  KG+ ++  ++LT +  ID S NK +G IPE +G L  L  LN+S+N+ T
Sbjct:   385 FVYEDTLDLQYKGLYMEQGKVLTFYSAIDFSGNKLEGEIPESIGLLKTLIALNLSNNSFT 444

Query:   243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTF 302
             G IP S  N+TE+ESLDLS N L G IP +L  L YL+ +++S NQ  G IP+G+Q    
Sbjct:   445 GHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGKIPQGTQIIGQ 504

Query:   303 PNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIG 362
             P  S+ GNSGLCG PL ESC  ++AP    ST+  EEE+     +W+ A +GYG G++ G
Sbjct:   505 PKSSFEGNSGLCGLPLEESCLREDAP----STQEPEEEEEEI-LEWRAAAIGYGPGVLFG 559

Query:   363 LSVGYMVFGTGKPRWLVR 380
             L++G++V    KP W ++
Sbjct:   560 LAIGHVV-ALYKPGWFIK 576

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 159/386 (41%), Positives = 227/386 (58%)

Query:     7 ATLYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
             ++L  LDLS NNF   I   PP         SNL +  L +R NN  G IP K+ +   L
Sbjct:   539 SSLDVLDLSYNNFTGPI---PPCL-------SNLLY--LKLRKNNLEGSIPDKYYEDTPL 586

Query:    66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
              SL++  NRL G LP SL+NC  L+ L+V +N I D FP  L+ LP+LQVL+L SN+F+G
Sbjct:   587 RSLDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFSLKALPKLQVLLLSSNKFYG 646

Query:   126 PIGE-NTTIVPFPSLRIIDLSHNEFTGVLLTG-YLDNFKAMMHGNN--ISVEVDYMTPLN 181
             P+   N   + FP LRI++++ N+ TG  L+  +  N+KA  H  N  + + + Y   + 
Sbjct:   647 PLSPPNEGPLGFPELRILEIAGNKLTGSFLSSDFFVNWKASSHTMNEDLGLYMVYGKVIF 706

Query:   182 SS---NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
              +    YYE+I L  KG+ ++   +LT   TID S N+ +G IPE +G L  L  LN+S+
Sbjct:   707 GNYHLTYYETIDLRYKGLSMEQRNVLTSSATIDFSGNRLEGEIPESIGLLKALIALNLSN 766

Query:   239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQ 298
             N  TG IP S  NL ++ESLDLSSN L G IP  L +L +L+ +N+S+NQ  G IP+G+Q
Sbjct:   767 NAFTGHIPLSFANLKKMESLDLSSNQLSGTIPNGLRTLSFLAYVNVSHNQLIGEIPQGTQ 826

Query:   299 FNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSG 358
                 P  S+ GN+GLCGFPL ESC     P        +EEE+     +WK   +GYG G
Sbjct:   827 ITGQPKSSFEGNAGLCGFPLQESCFGTNTPPAQHPKEQEEEEEDEQVLNWKAVAIGYGIG 886

Query:   359 LVIGLSVGYMVFGTGKPRWLVRMIEK 384
             +++GL++  ++    KP+WL  ++ K
Sbjct:   887 VLLGLAIAQLI-SLYKPKWLASLVIK 911

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 3.7e-67, P = 3.7e-67
 Identities = 162/396 (40%), Positives = 227/396 (57%)

Query:     5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
             G+A    LDLSNN L  +   P     Q+   S+L+  VL++R N+ +G +P  F+ +  
Sbjct:   613 GLANPLILDLSNNNLHGL--IPRCLEAQM---SSLS--VLNLRNNSLDGSLPNIFMNAKV 665

Query:    65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
             L+SL+++ N LEG LP SL  C  LE+LNV +N IND FP WL  LP+LQVL+LRSN F 
Sbjct:   666 LSSLDVSHNTLEGKLPASLAGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFR 725

Query:   125 GPIGENTTI-VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
             G +     +   FP LRI D+SHN+F G L + Y  N+ A+   +    E+ Y+      
Sbjct:   726 GTLHNVDGVWFGFPLLRITDVSHNDFVGTLPSDYFMNWTAI---SKSETELQYIGDPEDY 782

Query:   184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
              YY S++L  KG+ ++M+RILT +  ID + NK QG IPE VG L  L  LN+S N  TG
Sbjct:   783 GYYTSLVLMNKGVSMEMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTG 842

Query:   244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFP 303
              IPSSL NLT +ESLD+S N + G IP +L +L  L  +N+S+NQ  G IP+G+QF+   
Sbjct:   843 HIPSSLANLTNLESLDISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQN 902

Query:   304 NDSYVGNSGLCGFPLLESCNIDEAPEPV------GSTRFDEEEDASSWFDWKFAKMGYGS 357
               SY GN G+ G  L + C    AP P        S+   EE++  SW     A +G+  
Sbjct:   903 CSSYEGNPGIYGSSLKDVCGDIHAPRPPQAVLPHSSSSSSEEDELISWIA---ACLGFAP 959

Query:   358 GLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIR 393
             G+V GL++GY +  + K  W +    + +    R R
Sbjct:   960 GMVFGLTMGY-IMTSHKHEWFMDTFGRRKGRSTRTR 994

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 158/399 (39%), Positives = 223/399 (55%)

Query:     1 MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV 60
             +W   +  L++LDLSNN        P   +   NF  NLT  +L    N F+G +P  F 
Sbjct:   404 VWICKLKGLHFLDLSNNLFNGS--IP---LCLRNF--NLTGLILGN--NKFSGTLPDIFA 454

Query:    61 KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
              + NL SL+++GN+LEG  P SL+NC  L  +NV +N+I D FP+WL  LP LQVLILRS
Sbjct:   455 NNTNLQSLDVSGNQLEGKFPKSLINCKGLHFVNVESNKIKDTFPSWLGSLPSLQVLILRS 514

Query:   121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM---HGNNISVEVDYM 177
             N F+GP+   +  + F  LRIID+SHN F+GVL   +  +++ M+   HG+   +E D  
Sbjct:   515 NDFYGPLYHPSMSIGFQGLRIIDISHNGFSGVLPPNFFSSWREMITLVHGSYEYIE-DIQ 573

Query:   178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
                N S  Y S+ +  KG+++  ERI   F  ID S N+  G IPE +G L  L+ LN+S
Sbjct:   574 ---NYSLIYRSMEMVNKGVEMSFERIRQDFRAIDFSENRIYGEIPESIGCLEELRLLNLS 630

Query:   238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS 297
              N  T DIP    NLT++E+LDLS N L G IP  L  L +LS +N S+N+ +GP+PRG+
Sbjct:   631 GNAFTSDIPRVWENLTKLETLDLSRNKLSGQIPQDLGKLSFLSYMNFSHNRLQGPVPRGT 690

Query:   298 QFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGS 357
             QF      S++ N  L G  L + C     P P      D  ++    F+W  A + YG 
Sbjct:   691 QFQRQRCSSFLDNHRLYG--LEDICEETHVPNPTSQPSEDLLDEEEKMFNWVAAAIAYGP 748

Query:   358 GLVIGLSVGYMVFGTGKPRWLVRMIEKYQSNKVRIRVSS 396
             G+  GL +GY +F +    W     EK+   K+R+  S+
Sbjct:   749 GVFCGLVIGY-IFTSHHHEWFT---EKFGRKKIRVTTSA 783

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 154/384 (40%), Positives = 221/384 (57%)

Query:     6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
             +++L +LDLSNN  +      P+ +   NF  ++  K L++  NNF+G +P  F K+  L
Sbjct:   466 LSSLGFLDLSNNLFSGSI---PSCIR--NFSGSI--KELNLGDNNFSGTLPDIFSKATEL 518

Query:    66 TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
              SL+++ N+LEG  P SL+NC  LE++NV +N+I D FP+WLE LP L VL LRSN+F+G
Sbjct:   519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYG 578

Query:   126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD-YMTPL--NS 182
             P+      + F SLRIID+SHN F+G L   Y  N+K M     ++ E+D YMT     +
Sbjct:   579 PLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDM---TTLTEEMDQYMTEFWRYA 635

Query:   183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
              +YY  + +  KG+D+  ERI   F  ID S NK  G IPE +G L  L+ LN+S N  T
Sbjct:   636 DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFT 695

Query:   243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTF 302
               IP  L NLT++E+LD+S N L G IP  L +L +LS +N S+N  +GP+PRG+QF   
Sbjct:   696 SVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQ 755

Query:   303 PNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWFDWKFAKMGYGSGLVIG 362
                S++ N GL G  L + C    A  P      D  E   + F+W  A + YG G++ G
Sbjct:   756 KCSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCG 813

Query:   363 LSVGYMVFGTGKPRWLVRMIEKYQ 386
             L +G+  + +    W      + Q
Sbjct:   814 LVIGHF-YTSHNHEWFTEKFGRKQ 836

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 157/385 (40%), Positives = 228/385 (59%)

Query:     8 TLYYLDLS-NNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
             +L +LDLS NNF   I   PP         SN    +L++R NN  G IP  +     L 
Sbjct:   510 SLVFLDLSYNNFTGPI---PPC-------PSNFL--ILNLRKNNLEGSIPDTYYADAPLR 557

Query:    67 SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
             SL++  NRL G LP SL+NC  L+ L+V +N I D FP  L+ LP+LQVLIL SN F+GP
Sbjct:   558 SLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIKDTFPFSLKALPKLQVLILHSNNFYGP 617

Query:   127 IGE-NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA--MMHGNNISVEVDYMTPLNSS 183
             +   N   + FP LRI++++ N+FTG L   + +N+KA  +    +  + + Y   +  +
Sbjct:   618 LSPPNQGSLGFPELRILEIAGNKFTGSLPPDFFENWKASSLTMNEDQGLYMVYNKVVYGT 677

Query:   184 NYY---ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
              Y+   E+I L  KG+ ++  R+L+   TID S N+ +G IPE +G L  L  LN+S+N 
Sbjct:   678 YYFTSLEAIDLQYKGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNA 737

Query:   241 LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFN 300
              TG IP SL NL ++ESLDLSSN L G IP  + +L +L+ +N+S+NQ  G IP+G+Q  
Sbjct:   738 FTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQIT 797

Query:   301 TFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSW--FDWKFAKMGYGSG 358
               P  S+ GN+GLCG PL ESC    AP P    + +EEE+       +WK   +GYG G
Sbjct:   798 GQPKSSFEGNAGLCGLPLQESCFGTNAP-PAQHPKEEEEEEEEEEQVLNWKGVGIGYGVG 856

Query:   359 LVIGLSVGYMVFGTGKPRWLVRMIE 383
             +++GL++  ++  + KP WLV + +
Sbjct:   857 VLLGLAIAQLI-ASYKPEWLVFLFQ 880

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_182000003 hypothetical protein (921 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  129 bits (326), Expect = 2e-32
 Identities = 94/301 (31%), Positives = 139/301 (46%), Gaps = 32/301 (10%)

Query: 15  SNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR 74
           SN F   I    P N+ + N   NLT  VLD+  NN  G+IP     S NL  L L  N 
Sbjct: 341 SNKFSGEI----PKNLGKHN---NLT--VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 75  LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIV 134
           LEG +P SL  C  L  + + +N  +   P+    LP +  L + +N   G I  N+   
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKW 449

Query: 135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIK 194
             PSL+++ L+ N+F G    G  D+F +    N           L+ + +  ++   + 
Sbjct: 450 DMPSLQMLSLARNKFFG----GLPDSFGSKRLEN---------LDLSRNQFSGAVPRKL- 495

Query: 195 GIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTE 254
                    L+  M + LS NK  G IP+ +     L  L++SHN L+G IP+S   +  
Sbjct: 496 -------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

Query: 255 VESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLC 314
           +  LDLS N L G IP  L +++ L  +N+S+N   G +P    F      +  GN  LC
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLC 608

Query: 315 G 315
           G
Sbjct: 609 G 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  114 bits (287), Expect = 2e-27
 Identities = 90/318 (28%), Positives = 135/318 (42%), Gaps = 71/318 (22%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLN-------FDSNLTHK------------VLD 45
            +  L  LDLS+N L+      P  + QL        F +N T K            VL 
Sbjct: 282 SLQKLISLDLSDNSLSGE---IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 46  MRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPN 105
           +  N F+G+IP+   K  NLT L+L+ N L G +P  L +  +L  L + +N +    P 
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 106 WLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165
            L     L+ + L+ N F G +    T +P   +  +D+S+N   G              
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPL--VYFLDISNNNLQG-------------- 442

Query: 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225
               I+     M  L                             + L+ NKF GG+P+  
Sbjct: 443 ---RINSRKWDMPSLQ---------------------------MLSLARNKFFGGLPDSF 472

Query: 226 GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285
           G   L + L++S N  +G +P  L +L+E+  L LS N L G IP +L+S K L  L+LS
Sbjct: 473 GSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531

Query: 286 YNQFEGPIPRGSQFNTFP 303
           +NQ  G IP  + F+  P
Sbjct: 532 HNQLSGQIP--ASFSEMP 547

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (271), Expect = 2e-25
 Identities = 89/299 (29%), Positives = 140/299 (46%), Gaps = 23/299 (7%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
           G+ +L +LDL  N LT     P +  N+  L +        L +  N  +G IP      
Sbjct: 234 GLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQY--------LFLYQNKLSGPIPPSIFSL 283

Query: 63  CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
             L SL+L+ N L G +P  ++   +LE+L++ +N      P  L  LP LQVL L SN+
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN---FKAMMHGNNISVEVDYMTP 179
           F G I +N  +    +L ++DLS N  TG +  G   +   FK ++  N++  E+     
Sbjct: 344 FSGEIPKN--LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP--KS 399

Query: 180 LNSSNYYESIILTIKGIDIKMERILT---IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236
           L +      + L       ++    T   +   +D+S+N  QG I      +  L+ L++
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295
           + N   G +P S  +   +E+LDLS N   G +P +L SL  L  L LS N+  G IP 
Sbjct: 460 ARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (258), Expect = 1e-23
 Identities = 92/292 (31%), Positives = 130/292 (44%), Gaps = 36/292 (12%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           ++L YL+LSNN  T                 NL  + LD+  N  +G+IP       +L 
Sbjct: 118 SSLRYLNLSNNNFTG----SIPR----GSIPNL--ETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L+L GN L G +P SL N   LE L + +NQ+    P  L  +  L+ + L  N   G 
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNNISVEVDYMTPLNSSN 184
           I     I    SL  +DL +N  TG + +  G L N + +               L  + 
Sbjct: 228 I--PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF--------------LYQNK 271

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244
               I  +I          L   +++DLS N   G IPE+V +L  L+ L++  NN TG 
Sbjct: 272 LSGPIPPSIFS--------LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323

Query: 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
           IP +L +L  ++ L L SN   G IP  L     L+VL+LS N   G IP G
Sbjct: 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =   99 bits (249), Expect = 1e-22
 Identities = 79/260 (30%), Positives = 120/260 (46%), Gaps = 33/260 (12%)

Query: 42  KVLDMRMNNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
           + +++  N  +G IP   F  S +L  LNL+ N   G +P   +    LE L++ NN ++
Sbjct: 96  QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLS 153

Query: 101 DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYL 158
              PN +     L+VL L  N   G I    ++    SL  + L+ N+  G +    G +
Sbjct: 154 GEIPNDIGSFSSLKVLDLGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 159 DNFKAMMHG-NNISVEVDY-MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK 216
            + K +  G NN+S E+ Y +  L S N+                        +DL  N 
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNH------------------------LDLVYNN 247

Query: 217 FQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL 276
             G IP  +G L  L+ L +  N L+G IP S+ +L ++ SLDLS N L G IP  +  L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 277 KYLSVLNLSYNQFEGPIPRG 296
           + L +L+L  N F G IP  
Sbjct: 308 QNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.7 bits (238), Expect = 3e-21
 Identities = 81/254 (31%), Positives = 118/254 (46%), Gaps = 25/254 (9%)

Query: 42  KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQIN 100
             +D+   N +GKI     +   + ++NL+ N+L GP+P  +      L  LN+ NN   
Sbjct: 72  VSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT 131

Query: 101 DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN 160
            + P     +P L+ L L +N   G I  +  I  F SL+++DL  N   G +    L  
Sbjct: 132 GSIPR--GSIPNLETLDLSNNMLSGEIPND--IGSFSSLKVLDLGGNVLVGKI-PNSL-- 184

Query: 161 FKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG 220
                  N  S+E   +    +SN     I    G   +M+ +  I+    L  N   G 
Sbjct: 185 ------TNLTSLEFLTL----ASNQLVGQIPRELG---QMKSLKWIY----LGYNNLSGE 227

Query: 221 IPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS 280
           IP  +G L  L  L++ +NNLTG IPSSL NL  ++ L L  N L G IP  + SL+ L 
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287

Query: 281 VLNLSYNQFEGPIP 294
            L+LS N   G IP
Sbjct: 288 SLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 91.8 bits (228), Expect = 6e-20
 Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 29/236 (12%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRS 120
           S  + S++L+G  + G +  ++    +++ +N+ NNQ++   P +       L+ L L +
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNNISVEVDYMT 178
           N F G I   +     P+L  +DLS+N  +G +    G   + K +  G N+ V      
Sbjct: 128 NNFTGSIPRGS----IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG---KI 180

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           P + +N                   LT    + L+SN+  G IP  +G++  LK + + +
Sbjct: 181 PNSLTN-------------------LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
           NNL+G+IP  +  LT +  LDL  N L G IP+ L +LK L  L L  N+  GPIP
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 2e-19
 Identities = 90/308 (29%), Positives = 129/308 (41%), Gaps = 66/308 (21%)

Query: 7   ATLYYLDLSNNFLTNIEYFPP--TNMTQLNF---DSN-----LTHKVLDMR--------M 48
           ++L  LDL  N L      P   TN+T L F    SN     +  ++  M+         
Sbjct: 164 SSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
           NN +G+IP +     +L  L+L  N L GP+P SL N  +L+ L +  N+++   P  + 
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN 168
            L +L  L L  N   G I E   ++   +L I+ L  N FTG                 
Sbjct: 282 SLQKLISLDLSDNSLSGEIPE--LVIQLQNLEILHLFSNNFTG----------------- 322

Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
            I V +  +  L                             + L SNKF G IP+ +GK 
Sbjct: 323 KIPVALTSLPRLQ---------------------------VLQLWSNKFSGEIPKNLGKH 355

Query: 229 NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
           N L  L++S NNLTG+IP  L +   +  L L SN L G IP  L + + L  + L  N 
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415

Query: 289 FEGPIPRG 296
           F G +P  
Sbjct: 416 FSGELPSE 423

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 80.6 bits (199), Expect = 2e-16
 Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 14/121 (11%)

Query: 210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI 269
           + L +   +G IP  + KL  L+ +N+S N++ G+IP SL ++T +E LDLS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 270 PTQLTSLKYLSVLNLSYNQFEGPIP--------RGSQFNTFPNDSYVGNSGLCGFPLLES 321
           P  L  L  L +LNL+ N   G +P          + FN      +  N+GLCG P L +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIPGLRA 536

Query: 322 C 322
           C
Sbjct: 537 C 537

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 17/160 (10%)

Query: 9   LYYLDLS-NNFLTNIEY----FPPTNMTQL---NFDSNLTH-------KVLDMRMNNFNG 53
           +Y+LD+S NN    I       P   M  L    F   L         + LD+  N F+G
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG 489

Query: 54  KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL 113
            +PRK      L  L L+ N+L G +P  L +C  L  L++ +NQ++   P     +P L
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 114 QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL 153
             L L  N+  G I +N   V   SL  +++SHN   G L
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNV--ESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 231 LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY-LSVLNLSYNQF 289
           +  +++S  N++G I S++  L  +++++LS+N L G IP  + +    L  LNLS N F
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 290 EGPIPRGSQFN 300
            G IPRGS  N
Sbjct: 131 TGSIPRGSIPN 141

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 35  FDSNLTHKVLD-MRMNN--FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV 91
           FDS      +D + ++N    G IP    K  +L S+NL+GN + G +PPSL +   LEV
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470

Query: 92  LNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
           L++  N  N + P  L  L  L++L L  N   G
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L L+   L G +P  +    HL+ +N+  N I  N P  L  +  L+VL L  N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 128 GENTTIVPFPSLRIIDLSHNEFTG 151
            E  ++    SLRI++L+ N  +G
Sbjct: 483 PE--SLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 8e-06
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 64  NLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
           NL SL+L+ NRL   +P  +     +L+VL++  N +    P     LP L+ L L  N 
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 123 F 123
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 12/77 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           L  ++LS N +      PP+  ++T L        +VLD+  N+FNG IP    +  +L 
Sbjct: 444 LQSINLSGNSIRGN--IPPSLGSITSL--------EVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 67  SLNLNGNRLEGPLPPSL 83
            LNLNGN L G +P +L
Sbjct: 494 ILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 22/58 (37%), Positives = 30/58 (51%)

Query: 208 MTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML 265
            ++DLS+N+           L  LK L++S NNLT   P +   L  + SLDLS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 26/157 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQL-NFDSNLTHKVLDMRMNNFNGKIPRKFV------K 61
           L  LDLS+N         P     L +   + + + L +  NN  G    + +       
Sbjct: 83  LQELDLSDN------ALGPDGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLKDL 135

Query: 62  SCNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPE---L 113
              L  L L  NRLEG     L  +L     L+ LN+ NN I D       E L     L
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195

Query: 114 QVLILRSNRFWGPIGENT---TIVPFPSLRIIDLSHN 147
           +VL L +N      G +    T+    SL +++L  N
Sbjct: 196 EVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 8e-04
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 231 LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           LK L++S+N LT     + + L  ++ LDLS N L    P   + L  L  L+LS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 61/249 (24%), Positives = 100/249 (40%), Gaps = 14/249 (5%)

Query: 59  FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118
            +       L             +L+N   L  L++  N++  N    LE L  L  L L
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDL 123

Query: 119 RSNRFWGPIGENTTIVPFP--SLRIIDLSHNEF-TGVLLTGYLDNFK-AMMHGNNISVEV 174
            +N     I +   ++     +L+ +DLS N+  +       L N K   +  N++S   
Sbjct: 124 DNN----NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP 179

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234
             ++  N SN     +   K  D+  E  L   +     SN     +   +  L  L GL
Sbjct: 180 KLLS--NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGL 237

Query: 235 NISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
            +S+N L  D+P S+ NL+ +E+LDLS+N +     + L SL  L  L+LS N     +P
Sbjct: 238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALP 294

Query: 295 RGSQFNTFP 303
             +      
Sbjct: 295 LIALLLLLL 303

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 9  LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
          L  LDLSNN LT I       +  L        KVLD+  NN     P  F    +L SL
Sbjct: 2  LKSLDLSNNRLTVIPDGAFKGLPNL--------KVLDLSGNNLTSISPEAFSGLPSLRSL 53

Query: 69 NLNGNRL 75
          +L+GN L
Sbjct: 54 DLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 63  CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
            NL +L+L+ N++   LPP L N  +LE L++  N+I D
Sbjct: 1   TNLETLDLSNNQITD-LPP-LSNLPNLETLDLSGNKITD 37

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
PLN03150	623	hypothetical protein; Provisional	99.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.4
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
PLN03150	623	hypothetical protein; Provisional	99.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.88
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.83
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.52
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.5
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.33
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.2
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.2
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
PRK15386	426	type III secretion protein GogB; Provisional	97.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
PRK15386	426	type III secretion protein GogB; Provisional	97.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.08
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.62
KOG4341	483	consensus F-box protein containing LRR [General fu	96.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.09
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.89
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.72
KOG4308	478	consensus LRR-containing protein [Function unknown	93.1
KOG4308	478	consensus LRR-containing protein [Function unknown	92.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.82
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.98
smart00370	26	LRR Leucine-rich repeats, outliers.	91.98
smart00370	26	LRR Leucine-rich repeats, outliers.	91.82
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.82
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.7
KOG4341	483	consensus F-box protein containing LRR [General fu	87.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.61
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.44
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.42
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	80.56

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4e-36  Score=317.06  Aligned_cols=309  Identities=28%  Similarity=0.416  Sum_probs=200.5

Q ss_pred             CCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEE
Q 015663            6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~   69 (403)
                      +++|+.|++++|.+.+..|   ..+++|+.|++++|             ++|+.|++++|.+++..|..+..+++|+.|+
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  338 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ  338 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence            4556666666666655544   34455556666555             3555555555555555555555555555555


Q ss_pred             ccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccC------------------------CCCCcEEEcccccccC
Q 015663           70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI------------------------LPELQVLILRSNRFWG  125 (403)
Q Consensus        70 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~------------------------l~~L~~L~l~~n~l~~  125 (403)
                      +++|++++.+|..++.+++|+.|++++|.+++.+|.++..                        +++|+.|++++|++++
T Consensus       339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence            5555555555555555555555555555555444544444                        4444555555554444


Q ss_pred             cCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCccccc-ccCCCCCCCcceEEEEEEe---ccchhhh
Q 015663          126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD-YMTPLNSSNYYESIILTIK---GIDIKME  201 (403)
Q Consensus       126 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~  201 (403)
                      .+|..+  ..+++|+.|++++|.+++..+.. +..++.|+.+........ .++.......+..+..+.+   +..+..+
T Consensus       419 ~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~  495 (968)
T PLN00113        419 ELPSEF--TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL  495 (968)
T ss_pred             ECChhH--hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhh
Confidence            444433  44555555555555555443322 222333333322111110 0000000111222222222   2223345


Q ss_pred             hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV  281 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  281 (403)
                      ..+++|+.|++++|.+++.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|||++|++++.+|..+..+++|+.
T Consensus       496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 015663          282 LNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFP  317 (403)
Q Consensus       282 L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~  317 (403)
                      +++++|+++|.+|...++.++....+.||+.+||.+
T Consensus       576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             EeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999888899999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.5e-32  Score=286.34  Aligned_cols=309  Identities=28%  Similarity=0.353  Sum_probs=243.7

Q ss_pred             CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L   68 (403)
                      ++++|++|++++|.+++..|   ..+++|+.|++++|             ++|++|++++|.+.+.+|..+.++++|++|
T Consensus       234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  313 (968)
T PLN00113        234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL  313 (968)
T ss_pred             cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence            57899999999999998877   67889999999998             689999999999999999999999999999


Q ss_pred             EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015663           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (403)
Q Consensus        69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  148 (403)
                      ++++|.+++.+|..+.++++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+  ..+++|+.|++++|.
T Consensus       314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~  391 (968)
T PLN00113        314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNS  391 (968)
T ss_pred             ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCE
Confidence            999999999999999999999999999999999999999999999999999999988887755  566666777777666


Q ss_pred             cccccchhhhhhhhhhcccCCCccccc-----ccCCCC---------------------CCCcceEEEEEEeccc---hh
Q 015663          149 FTGVLLTGYLDNFKAMMHGNNISVEVD-----YMTPLN---------------------SSNYYESIILTIKGID---IK  199 (403)
Q Consensus       149 l~~~~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~---------------------~~~~~~~~~~~~~~~~---~~  199 (403)
                      +.+..|.. +..++.|+.+........     .+....                     ....++.+....+.+.   +.
T Consensus       392 l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~  470 (968)
T PLN00113        392 LEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD  470 (968)
T ss_pred             ecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence            66655543 333333333322111110     000000                     0011122222111111   11


Q ss_pred             hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCC
Q 015663          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL  279 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  279 (403)
                      .. ..++|+.|++++|.+++.+|..+..+++|+.|+|++|++.+.+|..+.++++|++|++++|++++.+|..+..+++|
T Consensus       471 ~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  549 (968)
T PLN00113        471 SF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL  549 (968)
T ss_pred             cc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence            11 24679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEeCcCCcCccCCCCCC-CCCCCCCCcCCCCCCCCCCC
Q 015663          280 SVLNLSYNQFEGPIPRGS-QFNTFPNDSYVGNSGLCGFP  317 (403)
Q Consensus       280 ~~L~L~~N~l~~~ip~~~-~~~~~~~~~~~gn~~lc~~~  317 (403)
                      +.|++++|+++|.+|... .+..+..+.+.+|+..+..|
T Consensus       550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999863 34556667777777665444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-31  Score=247.04  Aligned_cols=283  Identities=25%  Similarity=0.284  Sum_probs=195.8

Q ss_pred             CCCCccEEECCCCCCCCcCC--CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEE
Q 015663            5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~   69 (403)
                      ++++|+.+++.+|.++.++.  ....++++|+|.+|             +.|+.||||.|.|+......|..-.++++|+
T Consensus       100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~  179 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN  179 (873)
T ss_pred             cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence            67888888888888887765  56667888998888             7889999999999855556777778899999


Q ss_pred             ccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcc
Q 015663           70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (403)
Q Consensus        70 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  149 (403)
                      |++|+|+..-...|.++.+|.+|.|+.|+++...+..|..+++|+.|+|..|++  .+.+..+|.++++|+.|.+..|++
T Consensus       180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i--rive~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI--RIVEGLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce--eeehhhhhcCchhhhhhhhhhcCc
Confidence            999999977778899999999999999999987777888899999999999988  445555668888888888888887


Q ss_pred             ccccchhhhhhhhhhcccCCCccccc-----ccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcc
Q 015663          150 TGVLLTGYLDNFKAMMHGNNISVEVD-----YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV  224 (403)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  224 (403)
                      ..... +.+-.+.++..+++......     .+.++....-+......+..+........++|+.|+|+.|.++...+..
T Consensus       258 ~kL~D-G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s  336 (873)
T KOG4194|consen  258 SKLDD-GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS  336 (873)
T ss_pred             ccccC-cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence            74433 33455566655555433322     2222222222222233344444455555777888888888888767777


Q ss_pred             cCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCC---ccccCCCCCCEEeCcCCcCc
Q 015663          225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIP---TQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       225 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~  290 (403)
                      |..+..|++|+|++|.++..-...|..+.+|+.|||++|.++..+.   ..|.++++|+.|++.+|++.
T Consensus       337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK  405 (873)
T ss_pred             HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence            7777777777777776664444455555666666666655544332   23444555555555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-29  Score=232.63  Aligned_cols=307  Identities=20%  Similarity=0.196  Sum_probs=186.4

Q ss_pred             CccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEcc
Q 015663            8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN   71 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~   71 (403)
                      +|+.|+|.+|.|+.+..   ..++.|+.||||.|             .++++|+|++|.|+..--+.|.++.+|..|.|+
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            45566666666555543   34455555666655             355666666666655445555555566666666


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015663           72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus        72 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  151 (403)
                      .|+++...+..|.++++|+.|+|..|+|.-..--.|.++++|+.|.+..|++.......+  ..+.++++|+|..|+++.
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce--eeecccceeecccchhhh
Confidence            666664444455556666666666555543323344555555555555555533333322  445555555555555543


Q ss_pred             ccchhhhhhhhhhcccCCCcccccccC--CCCC---CCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC
Q 015663          152 VLLTGYLDNFKAMMHGNNISVEVDYMT--PLNS---SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG  226 (403)
Q Consensus       152 ~~~~~~~~~l~~L~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  226 (403)
                      +. .+++-+++.|..+++....+..+.  .+..   ...+......+..++.+.+..+..|++|.|++|.++..-...|.
T Consensus       284 vn-~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  284 VN-EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             hh-cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence            32 222334444444443222222111  1111   11122222344555666677788999999999999977777888


Q ss_pred             CCCCCCEEEecCCCCCCCcC---ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCC
Q 015663          227 KLNLLKGLNISHNNLTGDIP---SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFP  303 (403)
Q Consensus       227 ~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~  303 (403)
                      .+++|++|||++|.+++.+.   ..|.++++|+.|++.+|++....-.+|.++..|++|||.+|.|...-|..+.-..+.
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk  442 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELK  442 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhh
Confidence            99999999999999986554   357789999999999999996667899999999999999999975555543333455


Q ss_pred             CCcCCCCCCCCCCC
Q 015663          304 NDSYVGNSGLCGFP  317 (403)
Q Consensus       304 ~~~~~gn~~lc~~~  317 (403)
                      .+.+.....+|++.
T Consensus       443 ~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  443 ELVMNSSSFLCDCQ  456 (873)
T ss_pred             hhhhcccceEEecc
Confidence            55566666777543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=8.9e-27  Score=216.68  Aligned_cols=286  Identities=26%  Similarity=0.337  Sum_probs=221.6

Q ss_pred             CCCCccEEECCCCCCC--CcCC--CCCCCCCeEeCCCC------------CCCCEEECcCCcCcccCCc-cccCCCCcCE
Q 015663            5 GIATLYYLDLSNNFLT--NIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPR-KFVKSCNLTS   67 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~--~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~   67 (403)
                      .+|.|+.+++..|+++  |+++  ..+..|..||||+|            +++.+|+||+|+|. .+|. .|-+++.|-+
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF  154 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence            5778888888888775  4555  67788889999998            78888999999998 5554 4568999999


Q ss_pred             EEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc-CcCCCCCCccCCCCccEEEccC
Q 015663           68 LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW-GPIGENTTIVPFPSLRIIDLSH  146 (403)
Q Consensus        68 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~  146 (403)
                      |+|++|++. .+|+.+..+..|++|+|++|.+...--..+..|++|++|.+++.+-+ ..+|..+  -.+.+|+.+|+|.
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--d~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--DDLHNLRDVDLSE  231 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch--hhhhhhhhccccc
Confidence            999999998 78888899999999999999876432233445677888888876543 3466655  7788999999999


Q ss_pred             CccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC
Q 015663          147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG  226 (403)
Q Consensus       147 n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  226 (403)
                      |++..+ | .++-+++.|..+++.+..+..+.                   .. .....+|++|++|.|+++ .+|+.+.
T Consensus       232 N~Lp~v-P-ecly~l~~LrrLNLS~N~iteL~-------------------~~-~~~W~~lEtLNlSrNQLt-~LP~avc  288 (1255)
T KOG0444|consen  232 NNLPIV-P-ECLYKLRNLRRLNLSGNKITELN-------------------MT-EGEWENLETLNLSRNQLT-VLPDAVC  288 (1255)
T ss_pred             cCCCcc-h-HHHhhhhhhheeccCcCceeeee-------------------cc-HHHHhhhhhhccccchhc-cchHHHh
Confidence            988743 3 33556666666665333222111                   00 112467889999999999 8999999


Q ss_pred             CCCCCCEEEecCCCCC-CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCC-CCCCC
Q 015663          227 KLNLLKGLNISHNNLT-GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQF-NTFPN  304 (403)
Q Consensus       227 ~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~-~~~~~  304 (403)
                      +++.|+.|.+.+|+++ ..+|..++.+.+|+++..++|.+. .+|..++.|..|+.|.|++|++- ++|+...+ ..+..
T Consensus       289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v  366 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV  366 (1255)
T ss_pred             hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence            9999999999999876 368899999999999999999987 89999999999999999999998 78887654 45677


Q ss_pred             CcCCCCCCCCCCCCC
Q 015663          305 DSYVGNSGLCGFPLL  319 (403)
Q Consensus       305 ~~~~gn~~lc~~~~~  319 (403)
                      +++..||.+.-+|..
T Consensus       367 LDlreNpnLVMPPKP  381 (1255)
T KOG0444|consen  367 LDLRENPNLVMPPKP  381 (1255)
T ss_pred             eeccCCcCccCCCCc
Confidence            788888888766654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=9.3e-27  Score=216.54  Aligned_cols=246  Identities=25%  Similarity=0.324  Sum_probs=162.7

Q ss_pred             CCCCCCCeEeCCCC------------CCCCEEECcCCcCcc-cCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCE
Q 015663           25 FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV   91 (403)
Q Consensus        25 ~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~   91 (403)
                      +.+++|++|.+++|            +.|+.+++.+|++.. -+|..+..+..|+.|+|++|++. +.|..+..-+++-+
T Consensus        52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iV  130 (1255)
T KOG0444|consen   52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIV  130 (1255)
T ss_pred             HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEE
Confidence            45566667776666            677888888887763 46777778888888888888888 78888888888888


Q ss_pred             EEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCc
Q 015663           92 LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS  171 (403)
Q Consensus        92 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~  171 (403)
                      |+||+|+|..+....|.+++.|-+|||++|++. .+|..+  ..+..|++|+|++|.+.-..... +.++++|..+...+
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~--RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQI--RRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSN  206 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHH--HHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhccc
Confidence            888888887744455667888888888888874 444444  67778888888888765321111 33334443333321


Q ss_pred             ccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccC
Q 015663          172 VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN  251 (403)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  251 (403)
                      ....                 ..+++.. ...+.+|..+|+|.|++. .+|+.+-++++|..|+|++|.|+ .+.-..+.
T Consensus       207 TqRT-----------------l~N~Pts-ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~  266 (1255)
T KOG0444|consen  207 TQRT-----------------LDNIPTS-LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE  266 (1255)
T ss_pred             ccch-----------------hhcCCCc-hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH
Confidence            1100                 0111111 122566777777777777 67777777777777777777776 44445566


Q ss_pred             CCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc-cCCCCC
Q 015663          252 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE-GPIPRG  296 (403)
Q Consensus       252 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~ip~~  296 (403)
                      ..+|++|++|+|+++ ..|++++.++.|+.|.+.+|+++ .-||++
T Consensus       267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG  311 (1255)
T KOG0444|consen  267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG  311 (1255)
T ss_pred             Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence            677777777777777 66777777777777777777664 234554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=8.1e-25  Score=193.84  Aligned_cols=140  Identities=29%  Similarity=0.392  Sum_probs=98.8

Q ss_pred             CccEEECCCCCCCCcCC--CCCCCCCeEeCCCC------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015663            8 TLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN   73 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n   73 (403)
                      .++.++..+|+++..++  ..+..+..+++.+|            +.|+.||..+|-++ .+|..++.+.+|+.|++..|
T Consensus       138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN  216 (565)
T ss_pred             hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence            34455555555555544  34444555555555            67788888888876 78888888888888888888


Q ss_pred             cCcCCCCccccCCCCCCEEEccCCcCCcCCChhcc-CCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015663           74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE-ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (403)
Q Consensus        74 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  152 (403)
                      ++. .+| .|.+|+.|.+|+++.|+|.- +|+... .++++.+||+.+|++.+ .|..+  +-+.+|.+||+++|.+++.
T Consensus       217 ki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke-~Pde~--clLrsL~rLDlSNN~is~L  290 (565)
T KOG0472|consen  217 KIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKE-VPDEI--CLLRSLERLDLSNNDISSL  290 (565)
T ss_pred             ccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeecccccccc-CchHH--HHhhhhhhhcccCCccccC
Confidence            888 676 67888888888888887765 554444 77888888888888744 45544  6677788888888887765


Q ss_pred             cc
Q 015663          153 LL  154 (403)
Q Consensus       153 ~~  154 (403)
                      ++
T Consensus       291 p~  292 (565)
T KOG0472|consen  291 PY  292 (565)
T ss_pred             Cc
Confidence            44

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=1.2e-24  Score=192.70  Aligned_cols=262  Identities=24%  Similarity=0.292  Sum_probs=201.2

Q ss_pred             ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~   88 (403)
                      ++.+++++|.+....+ .+.+|.        .+.+|++.+|++. ..|.+++.+..++.|+.++|++. .+|+.+..+.+
T Consensus        47 l~~lils~N~l~~l~~-dl~nL~--------~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~  115 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLRE-DLKNLA--------CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLIS  115 (565)
T ss_pred             hhhhhhccCchhhccH-hhhccc--------ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhh
Confidence            4455666666554432 233333        4488999999988 78889999999999999999998 88899999999


Q ss_pred             CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccC
Q 015663           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN  168 (403)
Q Consensus        89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~  168 (403)
                      |..++.+.|.+.. +|+.++.+..|+.++..+|++.. .|+.+  ..+.+|..+++.+|++....+.. .. ++.|++++
T Consensus       116 l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~s-lp~~~--~~~~~l~~l~~~~n~l~~l~~~~-i~-m~~L~~ld  189 (565)
T KOG0472|consen  116 LVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISS-LPEDM--VNLSKLSKLDLEGNKLKALPENH-IA-MKRLKHLD  189 (565)
T ss_pred             hhhhhccccceee-cCchHHHHhhhhhhhcccccccc-CchHH--HHHHHHHHhhccccchhhCCHHH-HH-HHHHHhcc
Confidence            9999999999887 77788888899999999998854 45544  67888889999999988665543 33 77777766


Q ss_pred             CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015663          169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS  248 (403)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  248 (403)
                      +.......++                    ...+.+.+|.-|++..|++. .+| +|.+++.|++|+++.|+++ .+|.+
T Consensus       190 ~~~N~L~tlP--------------------~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae  246 (565)
T KOG0472|consen  190 CNSNLLETLP--------------------PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAE  246 (565)
T ss_pred             cchhhhhcCC--------------------hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHH
Confidence            5332222111                    12233677888999999998 788 6889999999999999998 55654


Q ss_pred             c-cCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCC
Q 015663          249 L-RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG  312 (403)
Q Consensus       249 ~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~  312 (403)
                      . .+++++.+|||.+|++. +.|+.++-+++|.+||+|+|.+++..++-..+ .+..+.+.|||.
T Consensus       247 ~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  247 HLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             Hhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            4 58999999999999998 88999999999999999999999655554444 677777888874

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=2.8e-23  Score=183.80  Aligned_cols=267  Identities=22%  Similarity=0.208  Sum_probs=202.4

Q ss_pred             CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccC-CcCcCCCCccccCC
Q 015663            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNC   86 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l   86 (403)
                      ....++|..|+|+.++++.|+.|+.|        +.||||+|+|+.+-|++|.++.+|.+|.+.+ |+|+....+.|.++
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~L--------RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRL--------RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhh--------ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            45678999999999999999999888        9999999999999999999999999888766 99996666779999


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  166 (403)
                      ..|+.|.+.-|++.....+.|..+++|..|.+.+|.+.. ++.. ++..+.+++.+.+..|.+-...      +++.+..
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~-i~~~-tf~~l~~i~tlhlA~np~icdC------nL~wla~  211 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQS-ICKG-TFQGLAAIKTLHLAQNPFICDC------NLPWLAD  211 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhh-hccc-cccchhccchHhhhcCcccccc------ccchhhh
Confidence            999999999999999888999999999999999998843 3332 3477888999998888743211      1111110


Q ss_pred             cCCC-----------------cccccccCCCCCCCcceEE------EE-EEeccchhhhhhcccceEEEcccCcccccCC
Q 015663          167 GNNI-----------------SVEVDYMTPLNSSNYYESI------IL-TIKGIDIKMERILTIFMTIDLSSNKFQGGIP  222 (403)
Q Consensus       167 ~~~~-----------------~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p  222 (403)
                      ....                 ......+.........+..      .. .....+..-++.+++|++|+|++|++++.-+
T Consensus       212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence            0000                 0000000000000010000      00 0111223446678999999999999998889


Q ss_pred             cccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663          223 EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       223 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      .+|.+...+++|.|..|++....-..|.++..|+.|+|.+|+|+...|.+|..+.+|..|+|-.|.+.
T Consensus       292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            99999999999999999998666678889999999999999999888999999999999999888875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=3.2e-20  Score=184.73  Aligned_cols=238  Identities=22%  Similarity=0.275  Sum_probs=139.9

Q ss_pred             ccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCC
Q 015663            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPL   79 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~   79 (403)
                      -..|+++.+.++.+++....+|+.|+++.|         ++|++|++++|.++ .+|..   .++|+.|++++|.++ .+
T Consensus       203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~L  277 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HL  277 (788)
T ss_pred             CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hh
Confidence            445677777776555433446666666666         46666777776666 34432   234555555555555 33


Q ss_pred             CccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCC-C-------------c-cCCCCccEEEc
Q 015663           80 PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT-T-------------I-VPFPSLRIIDL  144 (403)
Q Consensus        80 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~-------------~-~~l~~L~~L~l  144 (403)
                      |..+   ++|+.|++++|+++. +|.   .+++|+.|++++|++++ +|... .             + ....+|+.|++
T Consensus       278 p~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdL  349 (788)
T PRK15387        278 PALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSV  349 (788)
T ss_pred             hhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEec
Confidence            3321   334445555555543 232   12345555555555433 11100 0             0 00135666666


Q ss_pred             cCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcc
Q 015663          145 SHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV  224 (403)
Q Consensus       145 ~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  224 (403)
                      ++|++++.++  ...++..|...++                      .+..    ++....+|+.|++++|.++ .+|..
T Consensus       350 S~N~Ls~LP~--lp~~L~~L~Ls~N----------------------~L~~----LP~l~~~L~~LdLs~N~Lt-~LP~l  400 (788)
T PRK15387        350 SDNQLASLPT--LPSELYKLWAYNN----------------------RLTS----LPALPSGLKELIVSGNRLT-SLPVL  400 (788)
T ss_pred             CCCccCCCCC--CCcccceehhhcc----------------------cccc----CcccccccceEEecCCccc-CCCCc
Confidence            6666664321  1122222211110                      0111    1122457899999999999 46653


Q ss_pred             cCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663          225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG  296 (403)
Q Consensus       225 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~  296 (403)
                         .++|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..
T Consensus       401 ---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        401 ---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             ---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence               367999999999998 567543   57889999999998 78989999999999999999999877764

>PLN03210 Resistant to P

Probab=99.82  E-value=6.4e-19  Score=187.48  Aligned_cols=297  Identities=16%  Similarity=0.186  Sum_probs=156.1

Q ss_pred             CCCCccEEECCCCCCC------CcCCC----CCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCC
Q 015663            5 GIATLYYLDLSNNFLT------NIEYF----PPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSC   63 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~------~~~~~----~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~   63 (403)
                      ++++|+.|.+..+...      ...|.    ...+|+.|++.++           .+|+.|++++|.+. .+|..+..++
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~~~l~  634 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGVHSLT  634 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccccccccCC
Confidence            4667777766544321      11221    1234666666655           46777777777776 5666677777


Q ss_pred             CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEE
Q 015663           64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID  143 (403)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  143 (403)
                      +|+.|+|+++.....+|. ++.+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+   ++++|+.|+
T Consensus       635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~  710 (1153)
T PLN03210        635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLN  710 (1153)
T ss_pred             CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEe
Confidence            777777776654435553 6677777777777766555577777777777777777765445555432   466677777


Q ss_pred             ccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEE----------EEEeccchhhhhhcccceEEEcc
Q 015663          144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII----------LTIKGIDIKMERILTIFMTIDLS  213 (403)
Q Consensus       144 l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~L~~L~Ls  213 (403)
                      +++|...+..|.. ..+++.|   .........++.......+..+.          .....+.......+++|+.|+++
T Consensus       711 Lsgc~~L~~~p~~-~~nL~~L---~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls  786 (1153)
T PLN03210        711 LSGCSRLKSFPDI-STNISWL---DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS  786 (1153)
T ss_pred             CCCCCCccccccc-cCCcCee---ecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence            7666443333221 1122222   11111111111000000000000          00001111112224567777777


Q ss_pred             cCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCC---------------------CCCEEeccCCcCCCCCCcc
Q 015663          214 SNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLT---------------------EVESLDLSSNMLVGHIPTQ  272 (403)
Q Consensus       214 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~---------------------~L~~L~Ls~n~l~~~~p~~  272 (403)
                      +|...+.+|..++++++|+.|++++|...+.+|..+ +++                     +|+.|+|++|.++ .+|..
T Consensus       787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~s  864 (1153)
T PLN03210        787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWW  864 (1153)
T ss_pred             CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHH
Confidence            776666677777777777777777664333455433 344                     4555555555555 45666


Q ss_pred             ccCCCCCCEEeCcCC-cCccCCCCC-CCCCCCCCCcCCCCCCC
Q 015663          273 LTSLKYLSVLNLSYN-QFEGPIPRG-SQFNTFPNDSYVGNSGL  313 (403)
Q Consensus       273 ~~~l~~L~~L~L~~N-~l~~~ip~~-~~~~~~~~~~~~gn~~l  313 (403)
                      +..+++|+.|++++| .+. .+|.. ..+..+....+.+++.+
T Consensus       865 i~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             HhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCccc
Confidence            666777777777763 444 34332 23334444444444333

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=3.9e-20  Score=185.04  Aligned_cols=237  Identities=24%  Similarity=0.338  Sum_probs=164.8

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCc
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (403)
                      .+...|+++++.++.++.....+++.|+|++|          ++|+.|++++|.++ .+|..+.  .+|+.|++++|+++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~  254 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT  254 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence            34677888888888765544567888888888          57899999999988 5676654  37899999999998


Q ss_pred             CCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchh
Q 015663           77 GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG  156 (403)
Q Consensus        77 ~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  156 (403)
                       .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|++++ +|..+    .++|+.|++++|.++... ..
T Consensus       255 -~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l----p~sL~~L~Ls~N~Lt~LP-~~  322 (754)
T PRK15370        255 -ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL----PSGITHLNVQSNSLTALP-ET  322 (754)
T ss_pred             -cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc----hhhHHHHHhcCCccccCC-cc
Confidence             7777664  579999999999986 676554  589999999999864 44432    247889999999888543 22


Q ss_pred             hhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEe
Q 015663          157 YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI  236 (403)
Q Consensus       157 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  236 (403)
                      ...+++.|...++   .                   +..++.   ...++|+.|++++|+++ .+|..+  .++|+.|+|
T Consensus       323 l~~sL~~L~Ls~N---~-------------------Lt~LP~---~l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdL  374 (754)
T PRK15370        323 LPPGLKTLEAGEN---A-------------------LTSLPA---SLPPELQVLDVSKNQIT-VLPETL--PPTITTLDV  374 (754)
T ss_pred             ccccceeccccCC---c-------------------cccCCh---hhcCcccEEECCCCCCC-cCChhh--cCCcCEEEC
Confidence            2223332221111   0                   011111   11357888888888887 566554  357888888


Q ss_pred             cCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccc----cCCCCCCEEeCcCCcCc
Q 015663          237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQL----TSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       237 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~L~~N~l~  290 (403)
                      ++|+++ .+|..+.  .+|+.|++++|++. .+|..+    ..++.+..+++.+|+++
T Consensus       375 s~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        375 SRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            888887 5665553  36888888888887 444433    34577788888888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=9.5e-20  Score=182.30  Aligned_cols=219  Identities=22%  Similarity=0.357  Sum_probs=163.0

Q ss_pred             CCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCC
Q 015663           28 TNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN   97 (403)
Q Consensus        28 ~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n   97 (403)
                      .+...|+++++          +.++.|++++|.++ .+|..+.  .+|++|++++|+++ .+|..+.  ++|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCC
Confidence            34556666665          57899999999999 6676654  58999999999999 6787654  47999999999


Q ss_pred             cCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCccccccc
Q 015663           98 QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM  177 (403)
Q Consensus        98 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~  177 (403)
                      .+.. +|..+.  .+|+.|++++|+++ .+|..+    .++|+.|++++|.+++.. ..+..++..|...++   ..   
T Consensus       252 ~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l----~~sL~~L~Ls~N~Lt~LP-~~lp~sL~~L~Ls~N---~L---  316 (754)
T PRK15370        252 RITE-LPERLP--SALQSLDLFHNKIS-CLPENL----PEELRYLSVYDNSIRTLP-AHLPSGITHLNVQSN---SL---  316 (754)
T ss_pred             ccCc-CChhHh--CCCCEEECcCCccC-cccccc----CCCCcEEECCCCccccCc-ccchhhHHHHHhcCC---cc---
Confidence            9986 676654  58999999999996 466644    258999999999998643 332333444332221   10   


Q ss_pred             CCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCE
Q 015663          178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVES  257 (403)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  257 (403)
                                      ..++.   ...++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.
T Consensus       317 ----------------t~LP~---~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~  371 (754)
T PRK15370        317 ----------------TALPE---TLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITT  371 (754)
T ss_pred             ----------------ccCCc---cccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCE
Confidence                            01111   114679999999999994 676553  78999999999998 6777653  68999


Q ss_pred             EeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663          258 LDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG  296 (403)
Q Consensus       258 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~  296 (403)
                      |++++|+++ .+|..+.  ..|+.|++++|+++ .+|..
T Consensus       372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~s  406 (754)
T PRK15370        372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPES  406 (754)
T ss_pred             EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchh
Confidence            999999999 5565554  46999999999998 66654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.81  E-value=1.7e-21  Score=189.02  Aligned_cols=290  Identities=24%  Similarity=0.291  Sum_probs=192.2

Q ss_pred             EECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcc
Q 015663           12 LDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPS   82 (403)
Q Consensus        12 L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~   82 (403)
                      |||..|.+....-..+.+|+.+....|         ++|+.|+.++|.++...+. + .-.+|++++++.|+++ .+|+.
T Consensus       183 ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-p-~p~nl~~~dis~n~l~-~lp~w  259 (1081)
T KOG0618|consen  183 LDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-P-VPLNLQYLDISHNNLS-NLPEW  259 (1081)
T ss_pred             eecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-c-ccccceeeecchhhhh-cchHH
Confidence            666666665222244445554444444         6777777777777632221 1 2246788888888887 56777


Q ss_pred             ccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhh
Q 015663           83 LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK  162 (403)
Q Consensus        83 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  162 (403)
                      +..+.+|+.++..+|++.. +|..+...++|+.|.+..|.+. .+|...  ..+.+|++|||..|.+...+. .++..+.
T Consensus       260 i~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~l--e~~~sL~tLdL~~N~L~~lp~-~~l~v~~  334 (1081)
T KOG0618|consen  260 IGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFL--EGLKSLRTLDLQSNNLPSLPD-NFLAVLN  334 (1081)
T ss_pred             HHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcc--cccceeeeeeehhccccccch-HHHhhhh
Confidence            7778888888888888855 6777777788888888888774 344443  667888888888888875443 3333222


Q ss_pred             h-hcccCCCcccccccCCCCC--CCcceEEEEEEeccc---hhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEe
Q 015663          163 A-MMHGNNISVEVDYMTPLNS--SNYYESIILTIKGID---IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI  236 (403)
Q Consensus       163 ~-L~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  236 (403)
                      . +..++..............  ...++.+.+..+.+.   .........|+.|+|++|.+.......+.+++.|++|+|
T Consensus       335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence            2 3333332222222211110  001111111222222   223345788999999999998555566789999999999


Q ss_pred             cCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc-CCCCCCCCCCCCCCcCCCCCC
Q 015663          237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG-PIPRGSQFNTFPNDSYVGNSG  312 (403)
Q Consensus       237 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~ip~~~~~~~~~~~~~~gn~~  312 (403)
                      ++|.++ .+|.++..+..|++|...+|++. ..| .+..++.|+.+|++.|+|+. .+|......++..+++.||.+
T Consensus       415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            999998 78899999999999999999998 667 78899999999999999974 455554457788888889885

>PLN03210 Resistant to P

Probab=99.80  E-value=4.8e-18  Score=180.85  Aligned_cols=267  Identities=19%  Similarity=0.264  Sum_probs=158.1

Q ss_pred             CccEEECCCCCCCCcCC-CCCCCCCeEeCCCC------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015663            8 TLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~   74 (403)
                      +|+.|++.++.++..+. ....+|+.|++++|            ++|+.|+++++.....+| .+..+++|++|++++|.
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS  668 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC
Confidence            47777777777766654 45567777777766            577788887765444666 36677788888887776


Q ss_pred             CcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (403)
Q Consensus        75 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  154 (403)
                      ....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|...+.+|..     .++|+.|++++|.+...+.
T Consensus       669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCccccccc
Confidence            555777777888888888888765444466544 5777777777777654444432     3466777777776654322


Q ss_pred             hhhhhhhhhhcccCCCcccc----cccCC--------CC------------------CCCcceEEEEE----Eeccchhh
Q 015663          155 TGYLDNFKAMMHGNNISVEV----DYMTP--------LN------------------SSNYYESIILT----IKGIDIKM  200 (403)
Q Consensus       155 ~~~~~~l~~L~~~~~~~~~~----~~~~~--------~~------------------~~~~~~~~~~~----~~~~~~~~  200 (403)
                      ...+.++..|..........    ..+.+        +.                  ....+..+.+.    ...++...
T Consensus       743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            11112222111111000000    00000        00                  00000001000    00001000


Q ss_pred             hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCC-cCCCCCCccccCCCCC
Q 015663          201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN-MLVGHIPTQLTSLKYL  279 (403)
Q Consensus       201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L  279 (403)
                        .+++|+.|++++|..-..+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|++++| ++. .+|..+..+++|
T Consensus       823 --~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L  895 (1153)
T PLN03210        823 --NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHL  895 (1153)
T ss_pred             --CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCC
Confidence              2445555555555433333332   356788888888887 78889999999999999996 455 677788899999


Q ss_pred             CEEeCcCCc
Q 015663          280 SVLNLSYNQ  288 (403)
Q Consensus       280 ~~L~L~~N~  288 (403)
                      +.+++++|.
T Consensus       896 ~~L~l~~C~  904 (1153)
T PLN03210        896 ETVDFSDCG  904 (1153)
T ss_pred             CeeecCCCc
Confidence            999999984

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.79  E-value=4.5e-22  Score=176.17  Aligned_cols=273  Identities=20%  Similarity=0.141  Sum_probs=189.3

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccC-CcCCcCCChhccCCCCCcEEEc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      .-..++|..|.|+...|.+|+.+.+|+.|+|++|.|+.+-|++|.++.+|..|-+.+ |+|+....+.|.+|..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            336689999999988888999999999999999999988899999999887776655 9999976688999999999999


Q ss_pred             ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCC------------CCcc
Q 015663          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS------------SNYY  186 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~------------~~~~  186 (403)
                      .-|++.-...+.  +..+++|..|.+.+|.+..+... .+..+..++.+.+...+..-.+.+..            +.+-
T Consensus       148 Nan~i~Cir~~a--l~dL~~l~lLslyDn~~q~i~~~-tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  148 NANHINCIRQDA--LRDLPSLSLLSLYDNKIQSICKG-TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             ChhhhcchhHHH--HHHhhhcchhcccchhhhhhccc-cccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            998885544443  38889999999999988754432 35555555555543332111111110            0000


Q ss_pred             eEEE-----EEEeccchhhh-hhcccceEEEcccCcccccCC-cccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEe
Q 015663          187 ESII-----LTIKGIDIKME-RILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLD  259 (403)
Q Consensus       187 ~~~~-----~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  259 (403)
                      ....     ..+......-+ .....+..--.+.....++.| ..|..+++|++|+|++|+++++-+.+|.++..++.|.
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY  304 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence            0000     00011111111 111111111112222333434 4588999999999999999999999999999999999


Q ss_pred             ccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCC-CCCCCCCcCCCCCCCCC
Q 015663          260 LSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQ-FNTFPNDSYVGNSGLCG  315 (403)
Q Consensus       260 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~-~~~~~~~~~~gn~~lc~  315 (403)
                      |..|+|...-...|.++..|+.|+|.+|+|+..-|-..+ ...+..+.+.+||+.|.
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            999999977778899999999999999999966665422 23345566778888874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=2e-18  Score=172.02  Aligned_cols=184  Identities=21%  Similarity=0.216  Sum_probs=116.2

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  119 (403)
                      +|+.|++++|.++ .+|..   .++|+.|++++|+++ .+|...   .+|+.|++++|.+++ +|..   ..+|+.|+++
T Consensus       283 ~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS  350 (788)
T PRK15387        283 GLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVS  350 (788)
T ss_pred             hcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCCc---ccccccccccCcccc-cccc---ccccceEecC
Confidence            3444455555444 23321   245566666666665 334321   235555566666554 3321   1478999999


Q ss_pred             cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015663          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK  199 (403)
Q Consensus       120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (403)
                      +|++++ +|..     .++|+.|++++|.+++. |.. ..++.   .+.......                   ..    
T Consensus       351 ~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~L-P~l-~~~L~---~LdLs~N~L-------------------t~----  396 (788)
T PRK15387        351 DNQLAS-LPTL-----PSELYKLWAYNNRLTSL-PAL-PSGLK---ELIVSGNRL-------------------TS----  396 (788)
T ss_pred             CCccCC-CCCC-----CcccceehhhccccccC-ccc-ccccc---eEEecCCcc-------------------cC----
Confidence            999865 4432     35788899999998853 321 22222   222211110                   01    


Q ss_pred             hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCcccc
Q 015663          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT  274 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  274 (403)
                      ++...+.|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..+.
T Consensus       397 LP~l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~  466 (788)
T PRK15387        397 LPVLPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  466 (788)
T ss_pred             CCCcccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence            1112467999999999999 46754   356889999999998 7899999999999999999999988777663

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.76  E-value=1.4e-20  Score=148.56  Aligned_cols=166  Identities=32%  Similarity=0.573  Sum_probs=127.4

Q ss_pred             ccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCC
Q 015663           59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPS  138 (403)
Q Consensus        59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  138 (403)
                      +.++.+++.|.+++|+++ .+|+.++.+.+|+.|++++|+|.. +|..++.+++|+.|.++.|++ ...|..+  +.+|.
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl-~~lprgf--gs~p~  103 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRL-NILPRGF--GSFPA  103 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhh-hcCcccc--CCCch
Confidence            346677888889999988 777888889999999999999887 788888899999999988887 3456655  88888


Q ss_pred             ccEEEccCCccccc-cchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcc
Q 015663          139 LRIIDLSHNEFTGV-LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF  217 (403)
Q Consensus       139 L~~L~l~~n~l~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  217 (403)
                      |+.||+++|++... .|..|+                                            .+..|+.|+|++|.+
T Consensus       104 levldltynnl~e~~lpgnff--------------------------------------------~m~tlralyl~dndf  139 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFF--------------------------------------------YMTTLRALYLGDNDF  139 (264)
T ss_pred             hhhhhccccccccccCCcchh--------------------------------------------HHHHHHHHHhcCCCc
Confidence            99999988887743 222221                                            144566677788887


Q ss_pred             cccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCC
Q 015663          218 QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL  276 (403)
Q Consensus       218 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  276 (403)
                      . .+|..++++++|+.|.+..|.+- .+|..++.++.|+.|.+++|+++ .+|..++++
T Consensus       140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            7 77777888888888888888877 67888888888888888888887 555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.75  E-value=4e-20  Score=179.69  Aligned_cols=253  Identities=30%  Similarity=0.384  Sum_probs=182.6

Q ss_pred             CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015663            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~   74 (403)
                      +.+|+.+..+.|.+.... ..-+.|+.|+.++|           .+|+++|+++|+++ .+|++++.+.+|+.+...+|+
T Consensus       198 ~~~l~~l~c~rn~ls~l~-~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  198 LANLEVLHCERNQLSELE-ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR  275 (1081)
T ss_pred             ccchhhhhhhhcccceEE-ecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchh
Confidence            445566666666665443 23356677777777           68899999999998 667999999999999999999


Q ss_pred             CcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccC-------------------
Q 015663           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVP-------------------  135 (403)
Q Consensus        75 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-------------------  135 (403)
                      ++ .+|..+..+++|+.|++..|.+.. +|....++..|++|+|..|++.. .|..+ +..                   
T Consensus       276 l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~-lp~~~-l~v~~~~l~~ln~s~n~l~~lp  351 (1081)
T KOG0618|consen  276 LV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPS-LPDNF-LAVLNASLNTLNVSSNKLSTLP  351 (1081)
T ss_pred             HH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccc-cchHH-HhhhhHHHHHHhhhhccccccc
Confidence            97 788888888888888888888887 66677778888888888888733 33322 111                   


Q ss_pred             ------CCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceE
Q 015663          136 ------FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMT  209 (403)
Q Consensus       136 ------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  209 (403)
                            .+.|+.|++.+|.++...... +.+..+|+.+++                   ....+..++......+..|++
T Consensus       352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhL-------------------syNrL~~fpas~~~kle~Lee  411 (1081)
T KOG0618|consen  352 SYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHL-------------------SYNRLNSFPASKLRKLEELEE  411 (1081)
T ss_pred             cccchhhHHHHHHHHhcCcccccchhh-hccccceeeeee-------------------cccccccCCHHHHhchHHhHH
Confidence                  123444444444444332211 222233333222                   222334455666677889999


Q ss_pred             EEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCC-CccccCCCCCCEEeCcCCc
Q 015663          210 IDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSVLNLSYNQ  288 (403)
Q Consensus       210 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~  288 (403)
                      |+||+|+++ .+|..+..+..|+.|...+|++. ..| .+..++.|+.+|++.|.++... |... ..+.|++||+++|.
T Consensus       412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            999999999 88899999999999999999998 777 7899999999999999998653 4333 33899999999997

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=7.1e-19  Score=162.87  Aligned_cols=87  Identities=26%  Similarity=0.321  Sum_probs=59.5

Q ss_pred             cccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCcccc-----CCCCCCEEeccCCcCCC----CCC
Q 015663          204 LTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSLR-----NLTEVESLDLSSNMLVG----HIP  270 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~Ls~n~l~~----~~p  270 (403)
                      .+.|+.|++++|.+++.    ++..+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++.    .+.
T Consensus       192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  271 (319)
T cd00116         192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA  271 (319)
T ss_pred             CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence            35788888888887633    334456678888888888888753222222     23688888888888762    233


Q ss_pred             ccccCCCCCCEEeCcCCcCc
Q 015663          271 TQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       271 ~~~~~l~~L~~L~L~~N~l~  290 (403)
                      ..+..++.|+.+++++|.++
T Consensus       272 ~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         272 EVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHhcCCCccEEECCCCCCc
Confidence            44556678888888888886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=1e-18  Score=161.84  Aligned_cols=235  Identities=20%  Similarity=0.231  Sum_probs=141.4

Q ss_pred             CCCEEECcCCcCcc------cCCccccCCCCcCEEEccCCcCcCCCCccccCCCC---CCEEEccCCcCCc----CCChh
Q 015663           40 THKVLDMRMNNFNG------KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH---LEVLNVGNNQIND----NFPNW  106 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~l~~n~l~~----~~p~~  106 (403)
                      +++.++++++.+.+      .++..+..+++|++|++++|.+.+..+..+..+.+   |++|++++|.+++    .+...
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            35666776666552      23445666778888888888777555555554444   8888888887763    12234


Q ss_pred             ccCC-CCCcEEEcccccccCcCCCCC--CccCCCCccEEEccCCccccccchhhhhhhh---hhcccCCCcccccccCCC
Q 015663          107 LEIL-PELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK---AMMHGNNISVEVDYMTPL  180 (403)
Q Consensus       107 ~~~l-~~L~~L~l~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~---~L~~~~~~~~~~~~~~~~  180 (403)
                      +..+ ++|+.|++++|.+++.....+  .+..+++|++|++++|.+++.........+.   .|+.+........   ..
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~---~~  208 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT---DE  208 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC---hH
Confidence            4555 777888888887763221111  1245567888888887777532222222222   3333322111000   00


Q ss_pred             CCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC-----CCCCCCEEEecCCCCCC----CcCccccC
Q 015663          181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG-----KLNLLKGLNISHNNLTG----DIPSSLRN  251 (403)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~----~~p~~~~~  251 (403)
                      .           . ..-......+++|+.|++++|.+++.....+.     ..+.|++|++++|.++.    .+...+..
T Consensus       209 ~-----------~-~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~  276 (319)
T cd00116         209 G-----------A-SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE  276 (319)
T ss_pred             H-----------H-HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhc
Confidence            0           0 00011223367899999999998853332222     24799999999999972    23445666


Q ss_pred             CCCCCEEeccCCcCCCC----CCccccCC-CCCCEEeCcCCcC
Q 015663          252 LTEVESLDLSSNMLVGH----IPTQLTSL-KYLSVLNLSYNQF  289 (403)
Q Consensus       252 l~~L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~L~~N~l  289 (403)
                      +++|+.+++++|.++..    ....+... +.|+.+++.+|++
T Consensus       277 ~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         277 KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            78999999999999855    34444444 6899999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=2.1e-19  Score=142.02  Aligned_cols=161  Identities=31%  Similarity=0.451  Sum_probs=139.3

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  119 (403)
                      ..+.|.+|+|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++.. +|..|+.++.|++||++
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhcc
Confidence            3477889999998 78889999999999999999999 899999999999999999999976 89999999999999999


Q ss_pred             cccccC-cCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663          120 SNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI  198 (403)
Q Consensus       120 ~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (403)
                      +|++.+ ..|..+  ..++.|+-|++++|.+.-.+++.                                          
T Consensus       111 ynnl~e~~lpgnf--f~m~tlralyl~dndfe~lp~dv------------------------------------------  146 (264)
T KOG0617|consen  111 YNNLNENSLPGNF--FYMTTLRALYLGDNDFEILPPDV------------------------------------------  146 (264)
T ss_pred             ccccccccCCcch--hHHHHHHHHHhcCCCcccCChhh------------------------------------------
Confidence            999865 456665  67888999999999987443321                                          


Q ss_pred             hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCC
Q 015663          199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNL  252 (403)
Q Consensus       199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  252 (403)
                         +.+.+|+.|.+..|.+- .+|.+++.+..|++|.+.+|+++ .+|..++++
T Consensus       147 ---g~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  147 ---GKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             ---hhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence               22678899999999998 89999999999999999999998 777766653

>PLN03150 hypothetical protein; Provisional

Probab=99.64  E-value=8.4e-16  Score=153.24  Aligned_cols=118  Identities=36%  Similarity=0.613  Sum_probs=106.2

Q ss_pred             cceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCc
Q 015663          206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS  285 (403)
Q Consensus       206 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  285 (403)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCccCCCCCCC--CCCCCCCcCCCCCCCCCCCCCCCCC
Q 015663          286 YNQFEGPIPRGSQ--FNTFPNDSYVGNSGLCGFPLLESCN  323 (403)
Q Consensus       286 ~N~l~~~ip~~~~--~~~~~~~~~~gn~~lc~~~~~~~C~  323 (403)
                      +|+++|.+|....  ........+.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999998632  1233456788999999987766664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.40  E-value=8.9e-15  Score=135.93  Aligned_cols=191  Identities=27%  Similarity=0.448  Sum_probs=153.7

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      ...|++.|.+. ++|..+..+..|+.+.+..|.+. .+|..++++..|..||++.|+++. +|..++.|+ |+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecC
Confidence            56899999997 89999999999999999999998 889999999999999999999987 777777665 899999999


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (403)
                      ++ +.+|+.+  +.++.|..||.+.|.+....+.  +.                                          
T Consensus       154 kl-~~lp~~i--g~~~tl~~ld~s~nei~slpsq--l~------------------------------------------  186 (722)
T KOG0532|consen  154 KL-TSLPEEI--GLLPTLAHLDVSKNEIQSLPSQ--LG------------------------------------------  186 (722)
T ss_pred             cc-ccCCccc--ccchhHHHhhhhhhhhhhchHH--hh------------------------------------------
Confidence            98 4567766  6788999999999988754332  11                                          


Q ss_pred             hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccC---CCC
Q 015663          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTS---LKY  278 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~---l~~  278 (403)
                       .+.+|+.|.+..|++. .+|+++..|+ |..||++.|+++ .+|-.|..|..|++|-|.+|.+. ..|..++.   ..-
T Consensus       187 -~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHI  261 (722)
T KOG0532|consen  187 -YLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHI  261 (722)
T ss_pred             -hHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceee
Confidence             1455667778888887 6777777654 889999999998 89999999999999999999998 56665543   333


Q ss_pred             CCEEeCcCCc
Q 015663          279 LSVLNLSYNQ  288 (403)
Q Consensus       279 L~~L~L~~N~  288 (403)
                      .++|+..-++
T Consensus       262 FKyL~~qA~q  271 (722)
T KOG0532|consen  262 FKYLSTQACQ  271 (722)
T ss_pred             eeeecchhcc
Confidence            5566666664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.37  E-value=6.8e-13  Score=126.50  Aligned_cols=199  Identities=31%  Similarity=0.458  Sum_probs=146.7

Q ss_pred             EEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC-CCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           43 VLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH-HLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        43 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      .++++.|.+. .....+..++.++.|++.+|.++ .++.....++ +|+.|++++|.+.. +|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence            4777777764 23334556678889999999988 6777766664 89999999998877 5567788899999999999


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (403)
                      ++... +...  +..++|+.|++++|.++......                                             
T Consensus       174 ~l~~l-~~~~--~~~~~L~~L~ls~N~i~~l~~~~---------------------------------------------  205 (394)
T COG4886         174 DLSDL-PKLL--SNLSNLNNLDLSGNKISDLPPEI---------------------------------------------  205 (394)
T ss_pred             hhhhh-hhhh--hhhhhhhheeccCCccccCchhh---------------------------------------------
Confidence            88543 3322  36788889999999887554321                                             


Q ss_pred             hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV  281 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  281 (403)
                      ..+..|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|+++. ++. +..+.+++.
T Consensus       206 ~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~  281 (394)
T COG4886         206 ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRE  281 (394)
T ss_pred             hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCE
Confidence            01344777888888644 56666778888888888888887 446777888889999999998884 443 778888999


Q ss_pred             EeCcCCcCccCCCCC
Q 015663          282 LNLSYNQFEGPIPRG  296 (403)
Q Consensus       282 L~L~~N~l~~~ip~~  296 (403)
                      |++++|.++...|..
T Consensus       282 L~~s~n~~~~~~~~~  296 (394)
T COG4886         282 LDLSGNSLSNALPLI  296 (394)
T ss_pred             EeccCccccccchhh
Confidence            999998887655543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.32  E-value=3.4e-14  Score=132.15  Aligned_cols=195  Identities=23%  Similarity=0.311  Sum_probs=152.4

Q ss_pred             CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccC
Q 015663            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN   85 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~   85 (403)
                      +..-...||+.|.+..++- .+....        .|+.+.+++|.+. .+|.+++++..|++|+|+.|+++ .+|..++.
T Consensus        74 ltdt~~aDlsrNR~~elp~-~~~~f~--------~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~  142 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPE-EACAFV--------SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD  142 (722)
T ss_pred             ccchhhhhccccccccCch-HHHHHH--------HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc
Confidence            3444456666666665532 222222        3377788999998 89999999999999999999999 89998888


Q ss_pred             CCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhc
Q 015663           86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM  165 (403)
Q Consensus        86 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  165 (403)
                      |+ |+.|-+++|+++. +|..++.+..|..||.+.|.+. .+|..+  +.+.+|+.|.+..|++...+++..        
T Consensus       143 lp-Lkvli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql--~~l~slr~l~vrRn~l~~lp~El~--------  209 (722)
T KOG0532|consen  143 LP-LKVLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQL--GYLTSLRDLNVRRNHLEDLPEELC--------  209 (722)
T ss_pred             Cc-ceeEEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHh--hhHHHHHHHHHhhhhhhhCCHHHh--------
Confidence            86 8999999999987 8888998899999999999984 455555  889999999999998875543321        


Q ss_pred             ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc
Q 015663          166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI  245 (403)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  245 (403)
                                                            .-.|..||+|.|+++ .+|-.|.++..|++|-|.+|.+. ..
T Consensus       210 --------------------------------------~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP  249 (722)
T KOG0532|consen  210 --------------------------------------SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP  249 (722)
T ss_pred             --------------------------------------CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence                                                  113778999999999 89999999999999999999998 66


Q ss_pred             CccccCC---CCCCEEeccCCc
Q 015663          246 PSSLRNL---TEVESLDLSSNM  264 (403)
Q Consensus       246 p~~~~~l---~~L~~L~Ls~n~  264 (403)
                      |..+.-.   .=-++|+..-++
T Consensus       250 PAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  250 PAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hHHHHhccceeeeeeecchhcc
Confidence            6554322   234677777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=4.8e-12  Score=120.72  Aligned_cols=182  Identities=32%  Similarity=0.474  Sum_probs=141.4

Q ss_pred             CCCCEEECcCCcCcccCCccccCCC-CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEE
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI  117 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  117 (403)
                      +.++.|++.+|.++ .+|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++.. +|...+.++.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence            45699999999998 7777777775 9999999999999 777778999999999999999998 666555889999999


Q ss_pred             cccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccc
Q 015663          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID  197 (403)
Q Consensus       118 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (403)
                      +++|++. .+|...  .....|+++.+++|.+..... . .                                       
T Consensus       193 ls~N~i~-~l~~~~--~~~~~L~~l~~~~N~~~~~~~-~-~---------------------------------------  228 (394)
T COG4886         193 LSGNKIS-DLPPEI--ELLSALEELDLSNNSIIELLS-S-L---------------------------------------  228 (394)
T ss_pred             ccCCccc-cCchhh--hhhhhhhhhhhcCCcceecch-h-h---------------------------------------
Confidence            9999985 455432  345569999999996322211 0 1                                       


Q ss_pred             hhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCcccc
Q 015663          198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT  274 (403)
Q Consensus       198 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  274 (403)
                          ..+..+..+.+.+|.+. ..+..++.++.++.|++++|.++ .++. ++.+.+++.|++++|.+....|....
T Consensus       229 ----~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         229 ----SNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ----hhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhhc
Confidence                11455666677788776 44777888888999999999998 4444 88889999999999998866665543

>PLN03150 hypothetical protein; Provisional

Probab=99.24  E-value=1.5e-11  Score=122.87  Aligned_cols=108  Identities=29%  Similarity=0.409  Sum_probs=86.3

Q ss_pred             CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      ++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|++++|.+++.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            47788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccccCcCCCCCCccC-CCCccEEEccCCccc
Q 015663          121 NRFWGPIGENTTIVP-FPSLRIIDLSHNEFT  150 (403)
Q Consensus       121 n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~  150 (403)
                      |++++.+|..+  .. ..++..+++.+|...
T Consensus       500 N~l~g~iP~~l--~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAAL--GGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHH--hhccccCceEEecCCccc
Confidence            88888888765  33 245667777777543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.22  E-value=2.9e-12  Score=110.69  Aligned_cols=131  Identities=31%  Similarity=0.303  Sum_probs=96.2

Q ss_pred             CCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceE
Q 015663          109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYES  188 (403)
Q Consensus       109 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  188 (403)
                      ..+.|+++|+++|.++ .+.+..  .-.|.++.|++++|.+..+..      +                           
T Consensus       282 TWq~LtelDLS~N~I~-~iDESv--KL~Pkir~L~lS~N~i~~v~n------L---------------------------  325 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESV--KLAPKLRRLILSQNRIRTVQN------L---------------------------  325 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhh--hhccceeEEeccccceeeehh------h---------------------------
Confidence            3456888888888773 455555  567888888888888774321      1                           


Q ss_pred             EEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCC
Q 015663          189 IILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH  268 (403)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  268 (403)
                                   ..+++|+.||||+|.++ .+..+-.++-+.+.|.|++|.+.  ....++.+-+|..||+++|+|...
T Consensus       326 -------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~l  389 (490)
T KOG1259|consen  326 -------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEEL  389 (490)
T ss_pred             -------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhH
Confidence                         12677888889988887 55566667788889999999886  223466777888899999988754


Q ss_pred             C-CccccCCCCCCEEeCcCCcCcc
Q 015663          269 I-PTQLTSLKYLSVLNLSYNQFEG  291 (403)
Q Consensus       269 ~-p~~~~~l~~L~~L~L~~N~l~~  291 (403)
                      . -..+++++.|+++.|.+|.+.+
T Consensus       390 deV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  390 DEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             HHhcccccccHHHHHhhcCCCccc
Confidence            2 3567888999999999998873

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=3.7e-12  Score=115.26  Aligned_cols=209  Identities=24%  Similarity=0.251  Sum_probs=106.8

Q ss_pred             CCCCcCEEEccCCcCcCCCC--ccccCCCCCCEEEccCCcCCcCCC--hhccCCCCCcEEEcccccccCcCCCCCCccCC
Q 015663           61 KSCNLTSLNLNGNRLEGPLP--PSLVNCHHLEVLNVGNNQINDNFP--NWLEILPELQVLILRSNRFWGPIGENTTIVPF  136 (403)
Q Consensus        61 ~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  136 (403)
                      ++.+|+...|.++.+. ..+  .....|++++.|||+.|-+....|  .....+++|+.|.++.|++.-....... ..+
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l  196 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLL  196 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhh
Confidence            4566666677766665 233  244566777777777776654322  2234667777777777776433333221 345


Q ss_pred             CCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCc
Q 015663          137 PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK  216 (403)
Q Consensus       137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  216 (403)
                      +.|+.|.++.|.++.-........++.+..+.+...+..                .+   ...-...+..|+.|||++|+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~----------------~~---~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII----------------LI---KATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc----------------ce---ecchhhhhhHHhhccccCCc
Confidence            667777777776663322222222222222222111000                00   00011224556677777776


Q ss_pred             ccccC-CcccCCCCCCCEEEecCCCCCCC-cCcc-----ccCCCCCCEEeccCCcCCCC-CCccccCCCCCCEEeCcCCc
Q 015663          217 FQGGI-PEVVGKLNLLKGLNISHNNLTGD-IPSS-----LRNLTEVESLDLSSNMLVGH-IPTQLTSLKYLSVLNLSYNQ  288 (403)
Q Consensus       217 l~~~~-p~~~~~l~~L~~L~L~~n~l~~~-~p~~-----~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~  288 (403)
                      +-... -...+.++.|..|+++.+.+... .|+.     -...++|+.|+++.|++... --..+..+++|+.|....|.
T Consensus       258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            65222 13345667777777777766531 1221     23456677777777776421 11234445566666666666


Q ss_pred             Cc
Q 015663          289 FE  290 (403)
Q Consensus       289 l~  290 (403)
                      ++
T Consensus       338 ln  339 (505)
T KOG3207|consen  338 LN  339 (505)
T ss_pred             cc
Confidence            65

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.19  E-value=1.5e-12  Score=114.70  Aligned_cols=190  Identities=21%  Similarity=0.241  Sum_probs=115.6

Q ss_pred             CCCCcCEEEccCCcCcCCCCcc----ccCCCCCCEEEccCCcCCcCCChh-------------ccCCCCCcEEEcccccc
Q 015663           61 KSCNLTSLNLNGNRLEGPLPPS----LVNCHHLEVLNVGNNQINDNFPNW-------------LEILPELQVLILRSNRF  123 (403)
Q Consensus        61 ~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~~p~~-------------~~~l~~L~~L~l~~n~l  123 (403)
                      .+++|++|+||+|.+...-+..    +..++.|++|.|.+|.+...--..             ...-++|+++...+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            4556777777777666443333    345666777777776654211111             12234566666666665


Q ss_pred             cCcCCCCC--CccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663          124 WGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (403)
Q Consensus       124 ~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (403)
                      .......+  .+...+.|+.+.++.|.+........                                        ...+
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al----------------------------------------~eal  209 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL----------------------------------------AEAL  209 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHH----------------------------------------HHHH
Confidence            22111100  12334556666666665542211111                                        1223


Q ss_pred             hhcccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCccc-----cCCCCCCEEeccCCcCCCC----
Q 015663          202 RILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSL-----RNLTEVESLDLSSNMLVGH----  268 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~~----  268 (403)
                      .+++.|+.|||..|-++..    +...+..+++|+.|++++|.++..-..++     ...++|++|.+.+|.++..    
T Consensus       210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~  289 (382)
T KOG1909|consen  210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA  289 (382)
T ss_pred             HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence            4588999999999998743    44567788999999999999975433332     2368999999999999754    


Q ss_pred             CCccccCCCCCCEEeCcCCcCc
Q 015663          269 IPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       269 ~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      +...+...+.|..|+|++|.+.
T Consensus       290 la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  290 LAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHhcchhhHHhcCCccccc
Confidence            2233455788999999999983

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.1e-11  Score=112.15  Aligned_cols=133  Identities=25%  Similarity=0.312  Sum_probs=62.5

Q ss_pred             CCCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCCCCCCEEECcCCcCcccCC--ccccCCCCcCEEEccCCcCcCC
Q 015663            5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP--RKFVKSCNLTSLNLNGNRLEGP   78 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~   78 (403)
                      ++++|+...|.+..+.....    ..+++++.           |||++|-+....|  .-...+++|+.|+++.|++...
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~-----------LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~  187 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRD-----------LDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF  187 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCccee-----------ecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence            45678888887777665542    34555554           4555554442111  1223455555555555555421


Q ss_pred             CCcc-ccCCCCCCEEEccCCcCCcCCChh-ccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc
Q 015663           79 LPPS-LVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (403)
Q Consensus        79 ~p~~-~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  150 (403)
                      .... -..++.|+.|.++.|.++-..-.+ ...+|+|+.|++..|....  ........+..|+.|||++|.+-
T Consensus       188 ~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  188 ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCccc
Confidence            1111 113445555566555555322221 2244556666665553111  11111133445556666655544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=4.3e-11  Score=98.73  Aligned_cols=106  Identities=27%  Similarity=0.413  Sum_probs=40.6

Q ss_pred             CCCEEECcCCcCcccCCcccc-CCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhc-cCCCCCcEEE
Q 015663           40 THKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPELQVLI  117 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~  117 (403)
                      +++.|+|++|.|+ .+. .++ .+.+|+.|++++|.|+ .++ .+..+++|++|++++|+|+.. +..+ ..+++|++|+
T Consensus        20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence            3478888888887 343 454 5778899999999988 453 577889999999999999874 3334 3588999999


Q ss_pred             cccccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015663          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus       118 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  151 (403)
                      +++|++.. +.+...+..+++|+.|++.+|.++.
T Consensus        95 L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   95 LSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -TTS---S-CCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCcCCC-hHHhHHHHcCCCcceeeccCCcccc
Confidence            99998854 3333344678899999999998874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=2.4e-11  Score=100.18  Aligned_cols=127  Identities=29%  Similarity=0.382  Sum_probs=51.2

Q ss_pred             CCCccEEECCCCCCCCcCCCCCC-CCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc-
Q 015663            6 IATLYYLDLSNNFLTNIEYFPPT-NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL-   83 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~~~~~-~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-   83 (403)
                      ...+++|+|.+|.|+.+..  +. .|.        +|+.||+++|.|+ .++ .+..++.|++|++++|+|+ .+++.+ 
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~--L~~~l~--------~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~   84 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIEN--LGATLD--------KLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLD   84 (175)
T ss_dssp             ------------------S----TT-T--------T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHH
T ss_pred             ccccccccccccccccccc--hhhhhc--------CCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchH
Confidence            3457889999999987642  22 233        3488999999998 443 5778999999999999999 565555 


Q ss_pred             cCCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEcccccccCcCCCC--CCccCCCCccEEEccC
Q 015663           84 VNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLRIIDLSH  146 (403)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~l~~  146 (403)
                      ..+++|++|++++|+|..... ..+..+++|+.|++.+|.++.. +..  +.+..+|+|+.||-..
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence            468999999999999986322 4567899999999999998643 221  1235678888887543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=1.5e-11  Score=106.35  Aligned_cols=81  Identities=26%  Similarity=0.338  Sum_probs=48.8

Q ss_pred             CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEE
Q 015663           64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID  143 (403)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  143 (403)
                      .|+++||++|.|+ .+.++..-.++++.|++++|.|...  +.+..+++|+.||+++|.++. +..+-  ..+-+.+.|.
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh--~KLGNIKtL~  358 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWH--LKLGNIKTLK  358 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhH--hhhcCEeeee
Confidence            4666677777666 5555666666677777777766643  235666667777777766632 22222  3455666666


Q ss_pred             ccCCccc
Q 015663          144 LSHNEFT  150 (403)
Q Consensus       144 l~~n~l~  150 (403)
                      ++.|.+.
T Consensus       359 La~N~iE  365 (490)
T KOG1259|consen  359 LAQNKIE  365 (490)
T ss_pred             hhhhhHh
Confidence            6666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=3.1e-10  Score=77.09  Aligned_cols=58  Identities=29%  Similarity=0.424  Sum_probs=26.4

Q ss_pred             CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCc
Q 015663           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ   98 (403)
Q Consensus        41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~   98 (403)
                      |++|++++|.++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444444444443333444444444444444444443333444444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.98  E-value=3.8e-10  Score=76.64  Aligned_cols=61  Identities=36%  Similarity=0.495  Sum_probs=47.6

Q ss_pred             CCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccc
Q 015663           63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF  123 (403)
Q Consensus        63 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  123 (403)
                      ++|++|++++|+++...+..|.++++|++|++++|.++...|.+|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4678888888888855556778888888888888888877777788888888888888764

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.89  E-value=4.8e-10  Score=107.33  Aligned_cols=103  Identities=29%  Similarity=0.304  Sum_probs=48.6

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      ..|++..|.|. .+...+..+++|++|++++|.|+...  .+..++.|+.|++++|.|+..  ..+..++.|+.+++++|
T Consensus        98 ~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen   98 EALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYN  172 (414)
T ss_pred             eeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcc
Confidence            55555555554 22222444555555555555555221  234445555555555555542  22333555555555555


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCcccc
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  151 (403)
                      .+...-+...  ..+.+++.+++.+|.+..
T Consensus       173 ~i~~ie~~~~--~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  173 RIVDIENDEL--SELISLEELDLGGNSIRE  200 (414)
T ss_pred             hhhhhhhhhh--hhccchHHHhccCCchhc
Confidence            5533222001  344455555555555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=1.4e-09  Score=111.58  Aligned_cols=128  Identities=23%  Similarity=0.261  Sum_probs=72.6

Q ss_pred             CCccEEECCCCCCCCcCC-CCCCCCCeEeCCCCCCCCEEECcCCc--CcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663            7 ATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNN--FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~   83 (403)
                      ...+.+.+.+|.+..+.. ...++|           ++|-+..|.  +....++.|..++.|+.|||++|.--+.+|..+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L-----------~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I  591 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKL-----------RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI  591 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCcc-----------ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence            456677777777665542 233344           344444443  332222335556666666666665444666666


Q ss_pred             cCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015663           84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (403)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  148 (403)
                      +++-+|++|++++..+.. +|..+.++..|.+|++..+.....++...  ..+++|++|.+....
T Consensus       592 ~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  592 GELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRLESIPGIL--LELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhhhhcccccCCCccc-cchHHHHHHhhheeccccccccccccchh--hhcccccEEEeeccc
Confidence            666666666666666664 66666666666666666655434443332  446666666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.88  E-value=1.6e-10  Score=110.56  Aligned_cols=215  Identities=28%  Similarity=0.315  Sum_probs=135.7

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ..++.++++.|.+. .+-..+..+++|+.|++.+|+|. .+...+..+++|++|++++|.|+...+  +..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            34466778888887 34455778899999999999999 455447789999999999999988543  567778999999


Q ss_pred             ccccccCcCCCCCCccCCCCccEEEccCCccccccch--hhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEecc
Q 015663          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI  196 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (403)
                      ++|.++. +.. +  ..+++|+.+++++|.+......  .....++.+....+   .+...                   
T Consensus       148 ~~N~i~~-~~~-~--~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n---~i~~i-------------------  201 (414)
T KOG0531|consen  148 SGNLISD-ISG-L--ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN---SIREI-------------------  201 (414)
T ss_pred             ccCcchh-ccC-C--ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC---chhcc-------------------
Confidence            9999843 222 2  5588999999999998866552  21222222211111   00000                   


Q ss_pred             chhhhhhcccceEEEcccCcccccCCcccCCCC--CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCcccc
Q 015663          197 DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN--LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT  274 (403)
Q Consensus       197 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  274 (403)
                        .....+..+..+++..|.++..-+  +..+.  +|+.+++++|.+. .++..+..+..+..|++.+|++...-  .+.
T Consensus       202 --~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~  274 (414)
T KOG0531|consen  202 --EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLE  274 (414)
T ss_pred             --cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--ccc
Confidence              001112333444666776663222  11222  2778888888876 44455666777888888888776432  133


Q ss_pred             CCCCCCEEeCcCCcCc
Q 015663          275 SLKYLSVLNLSYNQFE  290 (403)
Q Consensus       275 ~l~~L~~L~L~~N~l~  290 (403)
                      ....+..+....|.+.
T Consensus       275 ~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  275 RLPKLSELWLNDNKLA  290 (414)
T ss_pred             ccchHHHhccCcchhc
Confidence            4455556666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.83  E-value=3.2e-10  Score=100.12  Aligned_cols=149  Identities=24%  Similarity=0.250  Sum_probs=96.5

Q ss_pred             CCCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCccc-------------CCccccCCCCcCEEEc
Q 015663            4 LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-------------IPRKFVKSCNLTSLNL   70 (403)
Q Consensus         4 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~-------------~p~~~~~l~~L~~L~L   70 (403)
                      ++.+.|+++|||.|.+....+..+   ..| ++++..|+.|.|.+|.+.-.             .....++-+.|+.+..
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l---~~l-l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGL---EEL-LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC  164 (382)
T ss_pred             hcCCceeEeeccccccCccchHHH---HHH-HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence            356788888888888875544111   111 22234556667777766511             1112334568999999


Q ss_pred             cCCcCcCC----CCccccCCCCCCEEEccCCcCCcC----CChhccCCCCCcEEEcccccccCcCCCC--CCccCCCCcc
Q 015663           71 NGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLR  140 (403)
Q Consensus        71 ~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~  140 (403)
                      +.|++...    +...|...+.|+.+.++.|.|...    +...+..+++|++||+.+|.++..-...  -++..++.|+
T Consensus       165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR  244 (382)
T ss_pred             eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence            99998732    223467788999999999988532    2245678999999999999885432111  1236678899


Q ss_pred             EEEccCCccccccchh
Q 015663          141 IIDLSHNEFTGVLLTG  156 (403)
Q Consensus       141 ~L~l~~n~l~~~~~~~  156 (403)
                      .|+++++.+...-..+
T Consensus       245 El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  245 ELNLGDCLLENEGAIA  260 (382)
T ss_pred             eecccccccccccHHH
Confidence            9999998887544333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.52  E-value=1.4e-07  Score=96.96  Aligned_cols=109  Identities=28%  Similarity=0.260  Sum_probs=87.8

Q ss_pred             CCCCccEEECCCCC--CCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcc
Q 015663            5 GIATLYYLDLSNNF--LTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPS   82 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~--l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~   82 (403)
                      ..+.|++|-+.+|.  +..+....|..++.|        ++|||++|.--+.+|+.++++-+|++|+++++.+. .+|..
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~L--------rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~  613 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLL--------RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSG  613 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcce--------EEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchH
Confidence            45678888888886  555544556667666        88888887666789999999999999999999999 89999


Q ss_pred             ccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccc
Q 015663           83 LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR  122 (403)
Q Consensus        83 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  122 (403)
                      +.++++|.+|++..+.-...+|.....|++|++|.+..-.
T Consensus       614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            9999999999999887666567777779999999887653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.50  E-value=2.8e-09  Score=102.60  Aligned_cols=125  Identities=21%  Similarity=0.133  Sum_probs=91.8

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChh-ccCCCCCcEEE
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLI  117 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~  117 (403)
                      ..|.+.+.++|.+. ....++.-++.|+.|+|++|+++ .. +.+..|++|++|||++|.+.. +|.. ...+ +|+.|.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhcc-ccccchhhh-hheeee
Confidence            57788888888887 66667777888999999999998 33 378889999999999999886 4532 2233 489999


Q ss_pred             cccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcc
Q 015663          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV  172 (403)
Q Consensus       118 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~  172 (403)
                      +++|.++..-    .+.++.+|+.||+++|-+.+--.-.++..|..|..+.+.+.
T Consensus       239 lrnN~l~tL~----gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  239 LRNNALTTLR----GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             ecccHHHhhh----hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            9999875432    23678899999999998876544444556666666555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.5e-09  Score=93.95  Aligned_cols=86  Identities=19%  Similarity=0.168  Sum_probs=40.0

Q ss_pred             cCEEEccCCcCcC-CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEE
Q 015663           65 LTSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID  143 (403)
Q Consensus        65 L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  143 (403)
                      |+.|||++..++. .+-..++.|++|+.|.+.++++...+...+.+-.+|+.|+++.+.=.........+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5555555555441 111223445555555555555555444455555555555555442111111111224455555566


Q ss_pred             ccCCccc
Q 015663          144 LSHNEFT  150 (403)
Q Consensus       144 l~~n~l~  150 (403)
                      ++.+.++
T Consensus       267 lsWc~l~  273 (419)
T KOG2120|consen  267 LSWCFLF  273 (419)
T ss_pred             chHhhcc
Confidence            6555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=5.4e-09  Score=100.69  Aligned_cols=106  Identities=27%  Similarity=0.303  Sum_probs=74.6

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  283 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  283 (403)
                      ++.++.|+|++|+++. +. .+..++.|++|||++|.+. .+|.--..-..|..|.+++|.++..  ..+.++++|+.||
T Consensus       186 l~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~LD  260 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhccc
Confidence            6778889999999883 33 6778889999999999988 4554222223589999999988743  2467888999999


Q ss_pred             CcCCcCccCCCC--CCCCCCCCCCcCCCCCCCC
Q 015663          284 LSYNQFEGPIPR--GSQFNTFPNDSYVGNSGLC  314 (403)
Q Consensus       284 L~~N~l~~~ip~--~~~~~~~~~~~~~gn~~lc  314 (403)
                      +++|-|++.-.-  ...+..+..+.+.|||..|
T Consensus       261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            999988753111  1122334556688888777

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=4.2e-09  Score=91.28  Aligned_cols=58  Identities=24%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             CCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCC
Q 015663           88 HLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN  147 (403)
Q Consensus        88 ~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  147 (403)
                      .|+++||++..|+.. +-..+..+.+|+.|.+.++++.+.+...+  ..-.+|+.++++.+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMC  244 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccc
Confidence            466666666655531 11233455666666666666654443333  44456666666653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=1.3e-07  Score=82.21  Aligned_cols=222  Identities=17%  Similarity=0.218  Sum_probs=113.3

Q ss_pred             CEEECcCCcCcccC-Ccccc-CCCCcCEEEccCCcCc--CCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEE
Q 015663           42 KVLDMRMNNFNGKI-PRKFV-KSCNLTSLNLNGNRLE--GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI  117 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~-p~~~~-~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~  117 (403)
                      +.|.+.++.|-..- -..|+ ..+.+++|+|.+|.|+  .++...+.+|+.|++|+++.|++...+...-..+.+|++|.
T Consensus        48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV  127 (418)
T KOG2982|consen   48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV  127 (418)
T ss_pred             hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence            44555555544211 11233 3567778888888777  23444456778888888888877653322113456777777


Q ss_pred             cccccccCcCCCCCCccCCCCccEEEccCCccccccch-----hhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEE
Q 015663          118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT-----GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT  192 (403)
Q Consensus       118 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (403)
                      |.+..+.-.-... .+..+|.++.|+++.|++......     .+......+....+....           +.+     
T Consensus       128 LNgT~L~w~~~~s-~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-----------w~~-----  190 (418)
T KOG2982|consen  128 LNGTGLSWTQSTS-SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-----------WLN-----  190 (418)
T ss_pred             EcCCCCChhhhhh-hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH-----------HHH-----
Confidence            7776652211111 125567777777777754322111     111111111111100000           000     


Q ss_pred             EeccchhhhhhcccceEEEcccCccccc-CCcccCCCCCCCEEEecCCCCCC-CcCccccCCCCCCEEeccCCcCCCCCC
Q 015663          193 IKGIDIKMERILTIFMTIDLSSNKFQGG-IPEVVGKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIP  270 (403)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p  270 (403)
                          .....+..|++..+-+..+.+... ....+..++.+.-|+|+.|+|.. .--+++.++++|.-|.+++|.+.+...
T Consensus       191 ----~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  191 ----KNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             ----HHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence                001122356666677777766532 22334456666677777777753 223456677777777777777754322


Q ss_pred             c------cccCCCCCCEEeC
Q 015663          271 T------QLTSLKYLSVLNL  284 (403)
Q Consensus       271 ~------~~~~l~~L~~L~L  284 (403)
                      .      .++.+++++.|+=
T Consensus       267 ~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  267 GGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             CCcceEEEEeeccceEEecC
Confidence            1      2345555655543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.21  E-value=6.6e-08  Score=74.42  Aligned_cols=98  Identities=24%  Similarity=0.303  Sum_probs=80.3

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  283 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  283 (403)
                      ...|+..+|++|.+....+.....++.++.|++++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++..||
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            456888999999999555554566779999999999999 88999999999999999999998 5677777799999999


Q ss_pred             CcCCcCccCCCCCCCCCCCCC
Q 015663          284 LSYNQFEGPIPRGSQFNTFPN  304 (403)
Q Consensus       284 L~~N~l~~~ip~~~~~~~~~~  304 (403)
                      .-+|.+. .||......+...
T Consensus       130 s~~na~~-eid~dl~~s~~~a  149 (177)
T KOG4579|consen  130 SPENARA-EIDVDLFYSSLPA  149 (177)
T ss_pred             CCCCccc-cCcHHHhccccHH
Confidence            9999987 7776644444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.20  E-value=4.6e-07  Score=77.87  Aligned_cols=89  Identities=17%  Similarity=0.116  Sum_probs=46.5

Q ss_pred             ccceEEEcccCcccccC-----CcccCCCCCCCEEEecCCCCCC----CcCccccCCCCCCEEeccCCcCCCCCCccc--
Q 015663          205 TIFMTIDLSSNKFQGGI-----PEVVGKLNLLKGLNISHNNLTG----DIPSSLRNLTEVESLDLSSNMLVGHIPTQL--  273 (403)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~--  273 (403)
                      ..|+.+.+..|.|...-     -..+..+.+|+.|+|..|-++.    .+...+..++.|+.|.+.+|-++......+  
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence            45666666666554221     1123345667777777776652    112233445566667776666654432221  


Q ss_pred             ----cCCCCCCEEeCcCCcCccCC
Q 015663          274 ----TSLKYLSVLNLSYNQFEGPI  293 (403)
Q Consensus       274 ----~~l~~L~~L~L~~N~l~~~i  293 (403)
                          ...++|..|-..+|...+-+
T Consensus       265 ~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             HhhhhcCCCccccccchhhhcCce
Confidence                12355666666666665443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.20  E-value=1.3e-06  Score=54.32  Aligned_cols=37  Identities=49%  Similarity=0.776  Sum_probs=17.4

Q ss_pred             CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCc
Q 015663           64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND  101 (403)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  101 (403)
                      +|++|++++|+++ .+|+.+++|++|++|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            4455555555555 344444555555555555555443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.14  E-value=4.9e-08  Score=75.11  Aligned_cols=79  Identities=30%  Similarity=0.398  Sum_probs=50.3

Q ss_pred             CEEECcCCcCcccCCcccc-CCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           42 KVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      +..+|++|.+. .+|..|. .++.++.|++++|.++ .+|..++.++.|+.|+++.|.+.. .|..+..+.++..|+..+
T Consensus        56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCC
Confidence            66667777666 4444443 3446666677777766 666666667777777777776665 555555566666666666


Q ss_pred             ccc
Q 015663          121 NRF  123 (403)
Q Consensus       121 n~l  123 (403)
                      |..
T Consensus       133 na~  135 (177)
T KOG4579|consen  133 NAR  135 (177)
T ss_pred             Ccc
Confidence            655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=1.6e-06  Score=75.64  Aligned_cols=220  Identities=18%  Similarity=0.172  Sum_probs=131.4

Q ss_pred             cccCCCCcCEEEccCCcCcCCCC-cccc-CCCCCCEEEccCCcCCcC--CChhccCCCCCcEEEcccccccCcCCCCCCc
Q 015663           58 KFVKSCNLTSLNLNGNRLEGPLP-PSLV-NCHHLEVLNVGNNQINDN--FPNWLEILPELQVLILRSNRFWGPIGENTTI  133 (403)
Q Consensus        58 ~~~~l~~L~~L~L~~n~l~~~~p-~~~~-~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  133 (403)
                      .+.....++-|.+.++.|...-- ..|+ .++.++.+||.+|.|+.-  +...+.+||.|++|+++.|++...|...-  
T Consensus        40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--  117 (418)
T KOG2982|consen   40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--  117 (418)
T ss_pred             eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--
Confidence            33444456677777776652211 1232 467899999999999862  22345689999999999999976654432  


Q ss_pred             cCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcc
Q 015663          134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLS  213 (403)
Q Consensus       134 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  213 (403)
                      ..+.+|+.|-|.+..+.-.....++..++.++.++....+..-+.      ..          ........+.+.+|++-
T Consensus       118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n------~D----------d~c~e~~s~~v~tlh~~  181 (418)
T KOG2982|consen  118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLN------LD----------DNCIEDWSTEVLTLHQL  181 (418)
T ss_pred             ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhc------cc----------cccccccchhhhhhhcC
Confidence            356789999999988765544455555555544433111000000      00          00000012233333333


Q ss_pred             cCcccc--cCCcccCCCCCCCEEEecCCCCCCC-cCccccCCCCCCEEeccCCcCCCCC-CccccCCCCCCEEeCcCCcC
Q 015663          214 SNKFQG--GIPEVVGKLNLLKGLNISHNNLTGD-IPSSLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSVLNLSYNQF  289 (403)
Q Consensus       214 ~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l  289 (403)
                      .|....  .+..--.-++++..+-+..|.+... ....+..++.+..|+|+.|+|.... -+.+.++++|..|.+++|.+
T Consensus       182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             CcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            332210  0111112357788888888877632 2345667788889999999997542 35678899999999999998


Q ss_pred             ccCCCC
Q 015663          290 EGPIPR  295 (403)
Q Consensus       290 ~~~ip~  295 (403)
                      ..++-.
T Consensus       262 ~d~l~~  267 (418)
T KOG2982|consen  262 SDPLRG  267 (418)
T ss_pred             cccccC
Confidence            765443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=2.9e-06  Score=52.74  Aligned_cols=36  Identities=42%  Similarity=0.697  Sum_probs=17.8

Q ss_pred             CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCC
Q 015663          230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLV  266 (403)
Q Consensus       230 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  266 (403)
                      +|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.98  E-value=5.9e-05  Score=70.32  Aligned_cols=32  Identities=16%  Similarity=0.223  Sum_probs=14.9

Q ss_pred             ccceEEEcccCcccccCCcccCCCCCCCEEEecCC
Q 015663          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN  239 (403)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  239 (403)
                      ++|+.|++++|... ..|..+.  .+|+.|+++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            45555555555543 2232221  34555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.95  E-value=2.4e-06  Score=73.54  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=54.2

Q ss_pred             hcccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCccc------cCCCCCCEEeccCCcCCCCCCcc
Q 015663          203 ILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSL------RNLTEVESLDLSSNMLVGHIPTQ  272 (403)
Q Consensus       203 ~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~------~~l~~L~~L~Ls~n~l~~~~p~~  272 (403)
                      .+.+|+.||++.|-++..    +...+..++.|..|.+..|-++.....++      ...++|..|-..+|.+.+.+-..
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~  291 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD  291 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence            367888888888887732    33445566778888888887764333222      12467788888888765432211


Q ss_pred             c-------cCCCCCCEEeCcCCcCc
Q 015663          273 L-------TSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       273 ~-------~~l~~L~~L~L~~N~l~  290 (403)
                      +       ..++-|..|.+.+|.+.
T Consensus       292 ~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         292 ISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             echhhhhhcccHHHHHHHHccCcch
Confidence            1       23455555666666665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=3.5e-06  Score=84.72  Aligned_cols=119  Identities=21%  Similarity=0.256  Sum_probs=81.0

Q ss_pred             CCCCEEECcCCcCcc-cCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCc-CCChhccCCCCCcEE
Q 015663           39 LTHKVLDMRMNNFNG-KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVL  116 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L  116 (403)
                      |.|+.|.+++-.+.. .+-....++++|..||+++++++. + ..++++++|++|.+.+=.+.. ..-..+..|++|++|
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            566777777765542 222334578899999999999883 4 678889999999888766654 112356789999999


Q ss_pred             EcccccccCcC--CCCC--CccCCCCccEEEccCCccccccchhhhh
Q 015663          117 ILRSNRFWGPI--GENT--TIVPFPSLRIIDLSHNEFTGVLLTGYLD  159 (403)
Q Consensus       117 ~l~~n~l~~~~--~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~  159 (403)
                      |+|..+.....  ....  ....+|+|+.||.|++.+.....+.+..
T Consensus       226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            99987653321  1100  0145899999999999888766555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=2.9e-05  Score=64.18  Aligned_cols=107  Identities=24%  Similarity=0.249  Sum_probs=78.9

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLIL  118 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l  118 (403)
                      +...+||++|.+. .+ +.|..++.|.+|.+++|+|+..-|.--.-+++|+.|.+.+|.|..... +-+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4477999999986 33 367788999999999999996555444456789999999999875321 23567899999999


Q ss_pred             ccccccCcCCC-CCCccCCCCccEEEccCCc
Q 015663          119 RSNRFWGPIGE-NTTIVPFPSLRIIDLSHNE  148 (403)
Q Consensus       119 ~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~  148 (403)
                      -+|..+..--- ...+..+|+|+.||+..-.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            99987543221 1134678999999987643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=1.5e-05  Score=80.22  Aligned_cols=119  Identities=22%  Similarity=0.228  Sum_probs=88.5

Q ss_pred             CCccEEECCCCCCCCcCC-----CCCCCCCeEeCCCC--------------CCCCEEECcCCcCcccCCccccCCCCcCE
Q 015663            7 ATLYYLDLSNNFLTNIEY-----FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS   67 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~-----~~~~~L~~L~l~~n--------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~   67 (403)
                      .+|++||+++...-....     ..++.|+.|.+.+-              ++|..||+|+++++..  ..+..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            468889998865443221     67888998888873              8999999999999844  67789999999


Q ss_pred             EEccCCcCcC-CCCccccCCCCCCEEEccCCcCCcCC--C----hhccCCCCCcEEEcccccccCcC
Q 015663           68 LNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNF--P----NWLEILPELQVLILRSNRFWGPI  127 (403)
Q Consensus        68 L~L~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~--p----~~~~~l~~L~~L~l~~n~l~~~~  127 (403)
                      |.+.+=.+.. ..-..+.+|++|++||+|........  .    +.-..||+|+.||.+++.+.+.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            9998877662 12235678999999999987655421  1    11235899999999998875543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=7.4e-05  Score=61.80  Aligned_cols=83  Identities=24%  Similarity=0.229  Sum_probs=64.8

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCC--ccccCCCCCCEEEccCCcCCcCCC---hhccCCCCC
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP--PSLVNCHHLEVLNVGNNQINDNFP---NWLEILPEL  113 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p---~~~~~l~~L  113 (403)
                      +.|.+|.+.+|.|+..-|.--.-+++|+.|.|.+|.|. .+.  +-+..+++|+.|.+-+|.++..--   -.+..+++|
T Consensus        64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l  142 (233)
T KOG1644|consen   64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL  142 (233)
T ss_pred             cccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence            56699999999999666655556788999999999988 332  236789999999999999875321   246789999


Q ss_pred             cEEEccccc
Q 015663          114 QVLILRSNR  122 (403)
Q Consensus       114 ~~L~l~~n~  122 (403)
                      ++||..+-.
T Consensus       143 ~~LDF~kVt  151 (233)
T KOG1644|consen  143 RTLDFQKVT  151 (233)
T ss_pred             eEeehhhhh
Confidence            999987654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00025  Score=66.23  Aligned_cols=139  Identities=15%  Similarity=0.191  Sum_probs=83.6

Q ss_pred             ccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCC
Q 015663           59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPS  138 (403)
Q Consensus        59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  138 (403)
                      +..+.+++.|++++|.++ .+|. +  -.+|+.|.++++.--..+|+.+  ..+|+.|.+++|.....+|        ++
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cc
Confidence            345788899999998888 5662 2  2468899988754434466544  2578888888873222233        34


Q ss_pred             ccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccc
Q 015663          139 LRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ  218 (403)
Q Consensus       139 L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  218 (403)
                      |+.|+++.+.....      .                                          ..+++|+.|.+.+++..
T Consensus       114 Le~L~L~~n~~~~L------~------------------------------------------~LPssLk~L~I~~~n~~  145 (426)
T PRK15386        114 VRSLEIKGSATDSI------K------------------------------------------NVPNGLTSLSINSYNPE  145 (426)
T ss_pred             cceEEeCCCCCccc------c------------------------------------------cCcchHhheeccccccc
Confidence            67777765543311      0                                          01345666666443211


Q ss_pred             --ccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCc
Q 015663          219 --GGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNM  264 (403)
Q Consensus       219 --~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~  264 (403)
                        ..+|..  -.++|++|++++|... ..|..+.  .+|+.|+++.+.
T Consensus       146 ~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        146 NQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             cccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence              011211  1257999999998866 4454443  589999998764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.25  E-value=0.00019  Score=61.83  Aligned_cols=94  Identities=20%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             cCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCC--cCCcCCChhccCCCCCcEEEcccccccCcCCCCC
Q 015663           54 KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN--QINDNFPNWLEILPELQVLILRSNRFWGPIGENT  131 (403)
Q Consensus        54 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~  131 (403)
                      .+....-.+..|+.|++.+..++. + ..|-.|++|+.|+++.|  ++.+.++.....+++|+++++++|++..  +..+
T Consensus        34 ~~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl  109 (260)
T KOG2739|consen   34 KLGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL  109 (260)
T ss_pred             Ccccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence            344455556677777777777662 2 23556778888888888  6665555555566888888888888742  2222


Q ss_pred             -CccCCCCccEEEccCCcccc
Q 015663          132 -TIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus       132 -~~~~l~~L~~L~l~~n~l~~  151 (403)
                       ....+.+|..||+.+|..+.
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             chhhhhcchhhhhcccCCccc
Confidence             22456677788888876654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=1.5e-05  Score=68.92  Aligned_cols=89  Identities=29%  Similarity=0.297  Sum_probs=59.4

Q ss_pred             CCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccE
Q 015663           62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRI  141 (403)
Q Consensus        62 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  141 (403)
                      +.+.++|++-++.++ .+ .....|+.|++|.|+-|+|+..-|  +..+++|++|+|..|.+. .+.+-..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DI-sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI-SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HH-HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            445667777777776 33 234567778888888888776533  667777888888887763 3444334577788888


Q ss_pred             EEccCCccccccch
Q 015663          142 IDLSHNEFTGVLLT  155 (403)
Q Consensus       142 L~l~~n~l~~~~~~  155 (403)
                      |-|..|...+..+.
T Consensus        93 LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQ  106 (388)
T ss_pred             HhhccCCcccccch
Confidence            87777777665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.97  E-value=0.00041  Score=59.83  Aligned_cols=101  Identities=26%  Similarity=0.294  Sum_probs=66.7

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCC--cCcCCCCccccCCCCCCEEEccCCcCCcCCChh---ccCCCCCcEE
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN--RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW---LEILPELQVL  116 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---~~~l~~L~~L  116 (403)
                      +.|++.+..++..  ..|-.+++|++|.++.|  ++.+.++.-...+++|++|++++|+|..  +..   +..+.+|..|
T Consensus        46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSL  121 (260)
T ss_pred             hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhh
Confidence            4555555555421  23456789999999999  7776666666677999999999999874  233   4466778888


Q ss_pred             EcccccccCcCC-CCCCccCCCCccEEEccC
Q 015663          117 ILRSNRFWGPIG-ENTTIVPFPSLRIIDLSH  146 (403)
Q Consensus       117 ~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~  146 (403)
                      ++.+|.-+..-. ....|.-+++|++||-..
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhccccccc
Confidence            888887544111 011235578888876543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.83  E-value=0.0058  Score=47.98  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=49.7

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ++|+.+.+.. .+...-...|.++.+|+.+.+.++ +...-..+|.++++++.+.+.+ .+.......|..+++|+.+++
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            3446666654 444444566777777888877764 5544445677777788887765 444444556666777877777


Q ss_pred             ccccccCcCCCCCCccCCCCccEEEccC
Q 015663          119 RSNRFWGPIGENTTIVPFPSLRIIDLSH  146 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~  146 (403)
                      ..+ +.......  +.+. +|+.+.+..
T Consensus        89 ~~~-~~~i~~~~--f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   89 PSN-ITEIGSSS--FSNC-NLKEINIPS  112 (129)
T ss_dssp             TTT--BEEHTTT--TTT--T--EEE-TT
T ss_pred             Ccc-ccEEchhh--hcCC-CceEEEECC
Confidence            654 32222222  2444 677776654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.62  E-value=0.0051  Score=48.29  Aligned_cols=103  Identities=18%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   84 (403)
                      ++++|+.+.+.. .+..+....+.+...|        +.+++.++ +...-..+|.++.+|+.+.+.+ .+.......|.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l--------~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSL--------KSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT---------SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccc--------cccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            445777888764 5665555555555444        88888775 6645566788888999999976 44434556788


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      ++++|+.+++..+ +.......|... +|+.+.+..
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            8999999999876 666556778887 999998876

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.56  E-value=4.7e-05  Score=69.64  Aligned_cols=84  Identities=23%  Similarity=0.245  Sum_probs=36.6

Q ss_pred             cccceEEEcccCccc--ccCCcccCCCCCCCEEEecCCCCCCCc-----CccccCCCCCCEEeccCCcCC-CCCCccccC
Q 015663          204 LTIFMTIDLSSNKFQ--GGIPEVVGKLNLLKGLNISHNNLTGDI-----PSSLRNLTEVESLDLSSNMLV-GHIPTQLTS  275 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~  275 (403)
                      .+.|+.+++.+....  +.+..--.+++.|+.|.|+++......     ...-..+..|+.+.|+++... +..-..+..
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~  424 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI  424 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence            344555555544322  111222234455666666655432111     111233455566666665432 223334455


Q ss_pred             CCCCCEEeCcCC
Q 015663          276 LKYLSVLNLSYN  287 (403)
Q Consensus       276 l~~L~~L~L~~N  287 (403)
                      ++.|+.+++-.+
T Consensus       425 c~~Leri~l~~~  436 (483)
T KOG4341|consen  425 CRNLERIELIDC  436 (483)
T ss_pred             Ccccceeeeech
Confidence            555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.00024  Score=61.79  Aligned_cols=74  Identities=22%  Similarity=0.233  Sum_probs=54.4

Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  164 (403)
                      .+.+.+.|++.++.++.+  ....+|+.|++|.|+-|+++...|-    ..+++|++|+|..|.|........+.+++.|
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl----~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPL----QRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhH----HHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            356778889999998863  3456899999999999998654442    6788999999999998765443444443333

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.96  E-value=0.0026  Score=32.85  Aligned_cols=17  Identities=41%  Similarity=0.718  Sum_probs=7.6

Q ss_pred             CEEECcCCcCcccCCccc
Q 015663           42 KVLDMRMNNFNGKIPRKF   59 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~   59 (403)
                      ++||+++|.++ .+|..|
T Consensus         3 ~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    3 EYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             SEEEETSSEES-EEGTTT
T ss_pred             cEEECCCCcCE-eCChhh
Confidence            44444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.89  E-value=0.003  Score=32.58  Aligned_cols=19  Identities=42%  Similarity=0.739  Sum_probs=9.8

Q ss_pred             cCEEEccCCcCcCCCCcccc
Q 015663           65 LTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus        65 L~~L~L~~n~l~~~~p~~~~   84 (403)
                      |++|++++|+++ .+|+.|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.72  E-value=0.0012  Score=56.06  Aligned_cols=88  Identities=20%  Similarity=0.167  Sum_probs=46.8

Q ss_pred             cccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCC
Q 015663           58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP  137 (403)
Q Consensus        58 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  137 (403)
                      .+..+...+.||++.|++. .+-..|+-++.|..||++.|.+.- .|..+..+..++.+++.+|.. +..|.+.  +..+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~-~~~p~s~--~k~~  111 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNH-SQQPKSQ--KKEP  111 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccch-hhCCccc--cccC
Confidence            3444555555666555555 333445555555556666555544 555555555555555555555 2334433  5555


Q ss_pred             CccEEEccCCccc
Q 015663          138 SLRIIDLSHNEFT  150 (403)
Q Consensus       138 ~L~~L~l~~n~l~  150 (403)
                      .++++++-.|.++
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            5666555555543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.10  E-value=0.00036  Score=67.40  Aligned_cols=110  Identities=21%  Similarity=0.195  Sum_probs=55.9

Q ss_pred             CCEEECcCCcCcccCC----ccccCCCCcCEEEccCCcCcCCCC----ccccCC-CCCCEEEccCCcCCcC----CChhc
Q 015663           41 HKVLDMRMNNFNGKIP----RKFVKSCNLTSLNLNGNRLEGPLP----PSLVNC-HHLEVLNVGNNQINDN----FPNWL  107 (403)
Q Consensus        41 L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l-~~L~~L~l~~n~l~~~----~p~~~  107 (403)
                      +..|+|.+|.+.....    ..+.....|+.|++++|.+...--    ..+... ..++.|++..|.++..    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4566666666664322    234456667777777777663211    112222 4455666666666542    23344


Q ss_pred             cCCCCCcEEEcccccccCc----CCCCC--CccCCCCccEEEccCCccc
Q 015663          108 EILPELQVLILRSNRFWGP----IGENT--TIVPFPSLRIIDLSHNEFT  150 (403)
Q Consensus       108 ~~l~~L~~L~l~~n~l~~~----~~~~~--~~~~l~~L~~L~l~~n~l~  150 (403)
                      .....++.++++.|.+...    ++...  .+....++++|.++++.++
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            4556666777777665210    01111  0013445666666666655

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.85  E-value=0.00028  Score=68.12  Aligned_cols=186  Identities=26%  Similarity=0.283  Sum_probs=106.1

Q ss_pred             ccEEECCCCCCCCcCC----CCCCCCCeEeCCCCCCCCEEECcCCcCcccCC----ccccCC-CCcCEEEccCCcCcCC-
Q 015663            9 LYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP----RKFVKS-CNLTSLNLNGNRLEGP-   78 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p----~~~~~l-~~L~~L~L~~n~l~~~-   78 (403)
                      +..++|.+|.+..-..    ..+..+        .+|..|+++.|++.+.--    ..+... +.+++|++..|.++.. 
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~--------~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g  160 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTL--------PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG  160 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhccc--------ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence            5556666666654432    112222        455888888888874322    222232 5677788888888743 


Q ss_pred             ---CCccccCCCCCCEEEccCCcCCc----CCChhcc----CCCCCcEEEcccccccCcCCCCC--CccCCCC-ccEEEc
Q 015663           79 ---LPPSLVNCHHLEVLNVGNNQIND----NFPNWLE----ILPELQVLILRSNRFWGPIGENT--TIVPFPS-LRIIDL  144 (403)
Q Consensus        79 ---~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~----~l~~L~~L~l~~n~l~~~~~~~~--~~~~l~~-L~~L~l  144 (403)
                         +.+.+.....++.+|++.|.+..    .++..+.    ...++++|.++++.++.......  .+...+. +..+++
T Consensus       161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l  240 (478)
T KOG4308|consen  161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL  240 (478)
T ss_pred             hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence               34455667888889999888742    1223333    35678899999887753221111  1133344 666888


Q ss_pred             cCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc-ccceEEEcccCccccc---
Q 015663          145 SHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL-TIFMTIDLSSNKFQGG---  220 (403)
Q Consensus       145 ~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~---  220 (403)
                      ..|.+.+.......   +.+.                                     .+ ..++.++++.|.++..   
T Consensus       241 ~~n~l~d~g~~~L~---~~l~-------------------------------------~~~~~l~~l~l~~nsi~~~~~~  280 (478)
T KOG4308|consen  241 ASNKLGDVGVEKLL---PCLS-------------------------------------VLSETLRVLDLSRNSITEKGVR  280 (478)
T ss_pred             HhcCcchHHHHHHH---HHhc-------------------------------------ccchhhhhhhhhcCCccccchH
Confidence            88877644211111   1110                                     02 4566777777777643   


Q ss_pred             -CCcccCCCCCCCEEEecCCCCC
Q 015663          221 -IPEVVGKLNLLKGLNISHNNLT  242 (403)
Q Consensus       221 -~p~~~~~l~~L~~L~L~~n~l~  242 (403)
                       .+..+..+++++.+.++.|.+.
T Consensus       281 ~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  281 DLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHhhhHHHHHhhcccCccc
Confidence             2334455567777777777665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.82  E-value=0.011  Score=57.89  Aligned_cols=111  Identities=24%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CCCCEEECcCCcCccc--CCccccCCCCcCEEEccCC-cCcCCCC----ccccCCCCCCEEEccCCc-CCcCCChhcc-C
Q 015663           39 LTHKVLDMRMNNFNGK--IPRKFVKSCNLTSLNLNGN-RLEGPLP----PSLVNCHHLEVLNVGNNQ-INDNFPNWLE-I  109 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~l~~n~-l~~~~p~~~~-~  109 (403)
                      +.|+.|.+..+.-...  .-.....+++|+.|+++++ ......+    .....+++|+.|+++.+. ++...-..+. .
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            4445555555422212  2233446778888888763 1111111    233456778888888777 5543323333 3


Q ss_pred             CCCCcEEEccccc-ccCcCCCCCCccCCCCccEEEccCCccc
Q 015663          110 LPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (403)
Q Consensus       110 l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~  150 (403)
                      +++|+.|.+.++. +++.--.. ....+++|++|+++.+...
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~-i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVS-IAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             CCCcceEccCCCCccchhHHHH-HHHhcCcccEEeeecCccc
Confidence            6788888866554 22211111 1145677888888876543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.98  E-value=0.14  Score=27.40  Aligned_cols=13  Identities=46%  Similarity=0.639  Sum_probs=6.2

Q ss_pred             CCCEEeccCCcCC
Q 015663          254 EVESLDLSSNMLV  266 (403)
Q Consensus       254 ~L~~L~Ls~n~l~  266 (403)
                      +|+.|+|++|+|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.98  E-value=0.14  Score=27.40  Aligned_cols=13  Identities=46%  Similarity=0.639  Sum_probs=6.2

Q ss_pred             CCCEEeccCCcCC
Q 015663          254 EVESLDLSSNMLV  266 (403)
Q Consensus       254 ~L~~L~Ls~n~l~  266 (403)
                      +|+.|+|++|+|.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.82  E-value=0.16  Score=27.20  Aligned_cols=15  Identities=33%  Similarity=0.567  Sum_probs=7.7

Q ss_pred             CCCCEEEccCCcCCc
Q 015663           87 HHLEVLNVGNNQIND  101 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~  101 (403)
                      ++|+.|++++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            345555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.82  E-value=0.16  Score=27.20  Aligned_cols=15  Identities=33%  Similarity=0.567  Sum_probs=7.7

Q ss_pred             CCCCEEEccCCcCCc
Q 015663           87 HHLEVLNVGNNQIND  101 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~  101 (403)
                      ++|+.|++++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            345555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.57  E-value=0.0032  Score=53.52  Aligned_cols=83  Identities=18%  Similarity=0.213  Sum_probs=72.7

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ...+.||++.|.+. .+-..|..++.|..|+++.|.+. ..|..++.+..+..+++..|..+. .|.++...+.++++++
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhh
Confidence            45589999999887 55567778889999999999998 899999999999999999998876 8999999999999999


Q ss_pred             cccccc
Q 015663          119 RSNRFW  124 (403)
Q Consensus       119 ~~n~l~  124 (403)
                      .+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            998763

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.70  E-value=0.035  Score=46.37  Aligned_cols=33  Identities=12%  Similarity=0.083  Sum_probs=18.4

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~   74 (403)
                      +.+|-++..|..+--+.+.+++.++.|.+.+++
T Consensus       104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             EEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            555666655555444555555555555555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.97  E-value=0.11  Score=48.25  Aligned_cols=128  Identities=17%  Similarity=0.146  Sum_probs=70.8

Q ss_pred             CCCCEEECcCCc-CcccCCccc-cCCCCcCEEEccCCcCcCC--CCccccCCCCCCEEEccCCcCCcCC-----ChhccC
Q 015663           39 LTHKVLDMRMNN-FNGKIPRKF-VKSCNLTSLNLNGNRLEGP--LPPSLVNCHHLEVLNVGNNQINDNF-----PNWLEI  109 (403)
Q Consensus        39 ~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~-----p~~~~~  109 (403)
                      .+|++|.++.++ ++..--..+ .+.+.|+.|++..+.....  +..--.+++.|+.|.++++....-.     ...-..
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            455555665553 221111122 2567889998888765421  2222347889999999987643211     122245


Q ss_pred             CCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcc-ccccchhhhhhhhhhccc
Q 015663          110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF-TGVLLTGYLDNFKAMMHG  167 (403)
Q Consensus       110 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~~  167 (403)
                      +..|+.+.+++++.+..-... .+...++|+.+++-++.- +......+...+++++..
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             ccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            678899999988763321111 124566888888877542 323333444455555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.61  E-value=0.065  Score=44.82  Aligned_cols=81  Identities=21%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             cceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCC-CcCcccc-CCCCCCEEeccCC-cCCCCCCccccCCCCCCEE
Q 015663          206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG-DIPSSLR-NLTEVESLDLSSN-MLVGHIPTQLTSLKYLSVL  282 (403)
Q Consensus       206 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~-~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L  282 (403)
                      .++.+|-++..+..+--+.+.+++.++.|.+.+|.--+ .-.+-++ -.++|+.|++++| +|+...-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            46778888888877777777888888888888775321 1111111 3478999999988 6876666677778888877


Q ss_pred             eCcC
Q 015663          283 NLSY  286 (403)
Q Consensus       283 ~L~~  286 (403)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.44  E-value=0.14  Score=26.77  Aligned_cols=14  Identities=50%  Similarity=0.736  Sum_probs=5.4

Q ss_pred             CCCCEEEccCCcCC
Q 015663           87 HHLEVLNVGNNQIN  100 (403)
Q Consensus        87 ~~L~~L~l~~n~l~  100 (403)
                      ++|++|++++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34444444444443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.42  E-value=0.94  Score=24.31  Aligned_cols=15  Identities=33%  Similarity=0.585  Sum_probs=8.8

Q ss_pred             CCCCEEEccCCcCCc
Q 015663           87 HHLEVLNVGNNQIND  101 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~  101 (403)
                      ++|+.|+++.|+|+.
T Consensus         2 ~~L~~L~L~~NkI~~   16 (26)
T smart00365        2 TNLEELDLSQNKIKK   16 (26)
T ss_pred             CccCEEECCCCccce
Confidence            456666666666544

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=80.56  E-value=6.1  Score=37.79  Aligned_cols=93  Identities=19%  Similarity=0.122  Sum_probs=52.6

Q ss_pred             CCccEEECCCCCCCCcCCCCCCC-CCeEeCCCC----------------CCCCEEECcCCcCcccCCccccC---CCCcC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTN-MTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVK---SCNLT   66 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~-L~~L~l~~n----------------~~L~~L~Ls~n~l~~~~p~~~~~---l~~L~   66 (403)
                      +.++++|++.|.+....|..+.. ---+.++.|                ..+.++|++.|.....+|.....   -.-++
T Consensus       165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~  244 (553)
T KOG4242|consen  165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF  244 (553)
T ss_pred             chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Confidence            56788889988887766511110 111334433                56778888888777777755432   12456


Q ss_pred             EEEccCCcCcC---CCCccccCCCCCCEEEccCCcC
Q 015663           67 SLNLNGNRLEG---PLPPSLVNCHHLEVLNVGNNQI   99 (403)
Q Consensus        67 ~L~L~~n~l~~---~~p~~~~~l~~L~~L~l~~n~l   99 (403)
                      .++.+...+.-   .-+-.++.-+++...+++.|..
T Consensus       245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~  280 (553)
T KOG4242|consen  245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT  280 (553)
T ss_pred             cccccccccchhhcccccccccccccchhhhccCCC
Confidence            66666655441   1122233445677777766644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	403
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-23
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-23
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-12
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 128/286 (44%), Gaps = 14/286 (4%)
Query: 40  THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
           T + L +  N+  G+IP       NL  ++L+ NRL G +P  +    +L +L + NN  
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 100 NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL- 158
           + N P  L     L  L L +N F G I       P    +        F       Y+ 
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTI-------PAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 159 -DNFKAMMHGNN-----ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL 212
            D  K   HG         +  + +  L++ N          G            M +D+
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ 272
           S N   G IP+ +G +  L  LN+ HN+++G IP  + +L  +  LDLSSN L G IP  
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 273 LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPL 318
           +++L  L+ ++LS N   GPIP   QF TFP   ++ N GLCG+PL
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 128/286 (44%), Gaps = 14/286 (4%)
Query: 40  THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
           T + L +  N+  G+IP       NL  ++L+ NRL G +P  +    +L +L + NN  
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 100 NDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL- 158
           + N P  L     L  L L +N F G I       P    +        F       Y+ 
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTI-------PAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 159 -DNFKAMMHGNN-----ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL 212
            D  K   HG         +  + +  L++ N          G            M +D+
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ 272
           S N   G IP+ +G +  L  LN+ HN+++G IP  + +L  +  LDLSSN L G IP  
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 273 LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPL 318
           +++L  L+ ++LS N   GPIP   QF TFP   ++ N GLCG+PL
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 103/246 (41%), Gaps = 23/246 (9%)
Query: 73  NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132
           N L GP+PP++     L  L + +  ++   P++L  +  L  L    N   G +    +
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP--S 144
Query: 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT 192
           I   P+L  I    N  +G +   Y  +F  +     IS           +     I  T
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTIS----------RNRLTGKIPPT 193
Query: 193 IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNL 252
              +++           +DLS N  +G    + G     + ++++ N+L  D+   +   
Sbjct: 194 FANLNLAF---------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLS 243
Query: 253 TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG 312
             +  LDL +N + G +P  LT LK+L  LN+S+N   G IP+G     F   +Y  N  
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 313 LCGFPL 318
           LCG PL
Sbjct: 304 LCGSPL 309

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 89/222 (40%), Gaps = 41/222 (18%)
Query: 87  HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146
            HLE++N    Q    FP     L  L+ L   SN+      E    V  PSL  +DLS 
Sbjct: 331 QHLELVNCKFGQ----FPTL--KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSR 380
Query: 147 NEFT----------GVLLTGYLD---NFKAMMHGNNISVEVDYMTPLNSSNYYE----SI 189
           N  +          G +   YLD   N    M  N + +E         SN  +    S+
Sbjct: 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440
Query: 190 ILTIKGIDIKMERILTIFMTIDLSSNKFQ-GGIPEVVGKLNLLK-GLNISHNNLTGDIPS 247
            L+++ +         I++ I  +  +    GI   +  L +LK   N    N   DI +
Sbjct: 441 FLSLRNL---------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491
Query: 248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
            LRNLT    LDLS   L    PT   SL  L VLN+S+N F
Sbjct: 492 ELRNLT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	403
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  271 bits (694), Expect = 6e-84
 Identities = 88/348 (25%), Positives = 148/348 (42%), Gaps = 40/348 (11%)

Query: 9   LYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L  L LS N+L+  I    P+++  L   S L    L + +N   G+IP++ +    L +
Sbjct: 420 LVSLHLSFNYLSGTI----PSSLGSL---SKLR--DLKLWLNMLEGEIPQELMYVKTLET 470

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L L+ N L G +P  L NC +L  +++ NN++    P W+  L  L +L L +N F G I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG---NNISVEVDYMTPLNSSN 184
                +    SL  +DL+ N F G +          +          V +          
Sbjct: 531 PA--ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC- 587

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244
           +    +L  +GI  +    L+     +++S  + G           +  L++S+N L+G 
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647

Query: 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ---------------- 288
           IP  + ++  +  L+L  N + G IP ++  L+ L++L+LS N+                
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707

Query: 289 --------FEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAP 328
                     GPIP   QF TFP   ++ N GLCG+PL      +   
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  174 bits (444), Expect = 2e-48
 Identities = 83/289 (28%), Positives = 121/289 (41%), Gaps = 55/289 (19%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC-NLTS 67
           L  L++S+N        PP  +  L        + L +  N F G+IP     +C  LT 
Sbjct: 249 LKLLNISSNQFVGP--IPPLPLKSL--------QYLSLAENKFTGEIPDFLSGACDTLTG 298

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGP 126
           L+L+GN   G +PP   +C  LE L + +N  +   P + L  +  L+VL L  N F G 
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
           + E+ T +   SL  +DLS N F+G +                           N     
Sbjct: 359 LPESLTNLS-ASLLTLDLSSNNFSGPI-------------------------LPNLCQNP 392

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246
                                  + L +N F G IP  +   + L  L++S N L+G IP
Sbjct: 393 -----------------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295
           SSL +L+++  L L  NML G IP +L  +K L  L L +N   G IP 
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  166 bits (422), Expect = 2e-45
 Identities = 84/309 (27%), Positives = 130/309 (42%), Gaps = 49/309 (15%)

Query: 9   LYYLDLSNNFLTN---IEYFPPTNMTQL--------NFD-----SNLTH-KVLDMRMNNF 51
           L  LDLS N ++    + +       +L                S   + + LD+  NNF
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNF 212

Query: 52  NGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILP 111
           +  IP        L  L+++GN+L G    ++  C  L++LN+ +NQ     P     L 
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 269

Query: 112 ELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAM-MHGN 168
            LQ L L  N+F G I +  +     +L  +DLS N F G +    G     +++ +  N
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGA-CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
           N S E+   T L          L                  +DLS N+F G +PE +  L
Sbjct: 329 NFSGELPMDTLLKMRG------LK----------------VLDLSFNEFSGELPESLTNL 366

Query: 229 NL-LKGLNISHNNLTGDIPSSLRN--LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285
           +  L  L++S NN +G I  +L       ++ L L +N   G IP  L++   L  L+LS
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 286 YNQFEGPIP 294
           +N   G IP
Sbjct: 427 FNYLSGTIP 435

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  165 bits (421), Expect = 3e-45
 Identities = 78/303 (25%), Positives = 129/303 (42%), Gaps = 42/303 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L +L++S+N L           +  L        +VLD+  N+ +G     +V S     
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSL--------EVLDLSANSISGANVVGWVLSDGCGE 179

Query: 68  ---LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
              L ++GN++ G +   +  C +LE L+V +N  +   P +L     LQ L +  N+  
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSS 183
           G       I     L+++++S N+F G +    L + + + +  N  + E+    P   S
Sbjct: 237 GDFSRA--ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI----PDFLS 290

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                                     +DLS N F G +P   G  +LL+ L +S NN +G
Sbjct: 291 G------------------ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 244 DIP-SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY-LSVLNLSYNQFEGPIPRGSQFNT 301
           ++P  +L  +  ++ LDLS N   G +P  LT+L   L  L+LS N F GPI      N 
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 302 FPN 304
              
Sbjct: 393 KNT 395

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  161 bits (409), Expect = 1e-43
 Identities = 66/302 (21%), Positives = 109/302 (36%), Gaps = 48/302 (15%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRK 58
           +      TL  L L NN  T     PPT  N ++L          L +  N  +G IP  
Sbjct: 388 LCQNPKNTLQELYLQNNGFT--GKIPPTLSNCSEL--------VSLHLSFNYLSGTIPSS 437

Query: 59  FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118
                 L  L L  N LEG +P  L+    LE L +  N +    P+ L     L  + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEV 174
            +NR  G I +   I    +L I+ LS+N F+G  +   L + +++    ++ N  +  +
Sbjct: 498 SNNRLTGEIPK--WIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234
               P                             +  +++N   G     +    + K  
Sbjct: 555 ----PAAMFK-----------------------QSGKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 235 NISHN--NLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292
           + + N     G     L  L+     +++S +  GH      +   +  L++SYN   G 
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647

Query: 293 IP 294
           IP
Sbjct: 648 IP 649

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  155 bits (395), Expect = 7e-42
 Identities = 75/289 (25%), Positives = 122/289 (42%), Gaps = 38/289 (13%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
           +DLS+  L        +++  L   + L    L +  ++ NG +   F  S +LTSL+L+
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSL---TGLES--LFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 72  GNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPI- 127
            N L GP+    SL +C  L+ LNV +N ++     +    L  L+VL L +N   G   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNYY 186
                      L+ + +S N+ +G +      N + + +  NN S  + ++   ++    
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSA---- 224

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246
               L                  +D+S NK  G     +     LK LNIS N   G IP
Sbjct: 225 ----LQ----------------HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 247 SSLRNLTEVESLDLSSNMLVGHIPTQLT-SLKYLSVLNLSYNQFEGPIP 294
                L  ++ L L+ N   G IP  L+ +   L+ L+LS N F G +P
Sbjct: 265 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  153 bits (388), Expect = 7e-41
 Identities = 71/301 (23%), Positives = 119/301 (39%), Gaps = 47/301 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK--FVKSCNLT 66
           L  L LSN+ +         +++     ++LT   LD+  N+ +G +           L 
Sbjct: 79  LESLFLSNSHING-------SVSGFKCSASLTS--LDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 67  SLNLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEI---LPELQVLILRSNR 122
            LN++ N L+ P      +  + LEVL++  N I+        +     EL+ L +  N+
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-LTGYLDNFKAM-MHGNNISVEVDYMTPL 180
             G +     +    +L  +D+S N F+  +   G     + + + GN +S +       
Sbjct: 190 ISGDVD----VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF----SR 241

Query: 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
             S                     T    +++SSN+F G IP     L  L+ L+++ N 
Sbjct: 242 AIST-------------------CTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280

Query: 241 LTGDIPSSLR-NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQF 299
            TG+IP  L      +  LDLS N   G +P    S   L  L LS N F G +P  +  
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 300 N 300
            
Sbjct: 341 K 341

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  138 bits (349), Expect = 9e-36
 Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 24/236 (10%)

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
           V S +L+S  LN       +  SL++   LE L + N+ IN +   +      L  L L 
Sbjct: 52  VTSIDLSSKPLNVGF--SAVSSSLLSLTGLESLFLSNSHINGSVSGFKC-SASLTSLDLS 108

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
            N   GP+   T++     L+ +++S N               ++               
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV------------- 155

Query: 180 LN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           L+ S+N      +    +   +         + +S NK  G +   V +   L+ L++S 
Sbjct: 156 LDLSANSISGANV----VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSS 209

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
           NN +  IP  L + + ++ LD+S N L G     +++   L +LN+S NQF GPIP
Sbjct: 210 NNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 7e-17
 Identities = 33/192 (17%), Positives = 57/192 (29%), Gaps = 52/192 (27%)

Query: 113 LQVLILRSNRFWGPIGE-NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS 171
           +  + L S          +++++    L  + LS++   G                    
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-------------------- 91

Query: 172 VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV--GKLN 229
                                     +   +      ++DLS N   G +  +   G  +
Sbjct: 92  -------------------------SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126

Query: 230 LLKGLNISHNNLTGDIP-SSLRNLTEVESLDLSSNMLVGHIPTQLT---SLKYLSVLNLS 285
            LK LN+S N L      S    L  +E LDLS+N + G              L  L +S
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 286 YNQFEGPIPRGS 297
            N+  G +    
Sbjct: 187 GNKISGDVDVSR 198

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 209 TIDLSSNKFQGG---IPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML 265
           +IDLSS     G   +   +  L  L+ L +S++++ G +    +    + SLDLS N L
Sbjct: 54  SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSL 112

Query: 266 VGHIPT--QLTSLKYLSVLNLSYNQFEGPIPRGSQFN 300
            G + T   L S   L  LN+S N  + P        
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 9e-11
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 231 LKGLNISHNNLT---GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
           +  +++S   L      + SSL +LT +ESL LS++ + G +         L+ L+LS N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 288 QFEGPIPRGSQFNTFPN 304
              GP+   +   +   
Sbjct: 111 SLSGPVTTLTSLGSCSG 127

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  173 bits (441), Expect = 2e-48
 Identities = 66/320 (20%), Positives = 119/320 (37%), Gaps = 31/320 (9%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L YL LSN+F  ++          L   S L   +L++  N  +      F    +L  L
Sbjct: 355 LKYLSLSNSFT-SLRTLTNETFVSLAH-SPL--HILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 69  NLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           +L  N +   L         ++  + +  N+      N   ++P LQ L+LR        
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSS 183
              +   P  +L I+DLS+N     +    L+  + +    +  NN++            
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLA------------ 517

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                      G  I   + L+    ++L SN F     EV   L  LK +++  NNL  
Sbjct: 518 ---RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNLSYNQFEGPIPRGSQFNTF 302
              S   N   ++SL+L  N++          + + L+ L++ +N F+      + F  +
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

Query: 303 PNDSYVGNSGL-----CGFP 317
            N+++     L     C  P
Sbjct: 635 INETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (350), Expect = 5e-36
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 39/327 (11%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
              ++L  L+LS+N +          + +L          L +        +  K     
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRL--------FGLFLNNVQLGPSLTEKLCLEL 219

Query: 64  NLTS---LNLNGNRLEGPLPPSLVNCH--HLEVLNVGNNQINDNFPNWLEILPELQVLIL 118
             TS   L+L+ ++L      + +     +L +L++  N +N    +    LP+L+   L
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA------------MMH 166
             N        + ++    ++R ++L  +     +    L                  M 
Sbjct: 280 EYNNIQHLF--SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337

Query: 167 GNNIS-VEVDYMTPLN-------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ 218
            N+I  ++ +  T L        S+++     LT +         L     ++L+ NK  
Sbjct: 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH---ILNLTKNKIS 394

Query: 219 GGIPEVVGKLNLLKGLNISHNNLTGDIP-SSLRNLTEVESLDLSSNMLVGHIPTQLTSLK 277
               +    L  L+ L++  N +  ++     R L  +  + LS N  +         + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 278 YLSVLNLSYNQFEGPIPRGSQFNTFPN 304
            L  L L     +      S F    N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (350), Expect = 5e-36
 Identities = 61/305 (20%), Positives = 106/305 (34%), Gaps = 28/305 (9%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  LD+  N ++ +E      +  L        KVL+++ N  +    + F    NLT L
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPML--------KVLNLQHNELSQLSDKTFAFCTNLTEL 102

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           +L  N ++       V   +L  L++ +N ++         L  LQ L+L +N+      
Sbjct: 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSSN 184
           E   I    SL+ ++LS N+       G       +    ++   +   +     L  +N
Sbjct: 163 EELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 185 YY-ESIILT---IKGIDIKMERILTIFM--TIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
               ++ L+   +          L       +DLS N       +    L  L+   + +
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHI---------PTQLTSLKYLSVLNLSYNQF 289
           NN+      SL  L  V  L+L  +     I               LK L  LN+  N  
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 290 EGPIP 294
            G   
Sbjct: 342 PGIKS 346

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  132 bits (333), Expect = 1e-33
 Identities = 60/294 (20%), Positives = 101/294 (34%), Gaps = 35/294 (11%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
            +  L+L++N L  +     T  +QL          LD+  N  +   P    K   L  
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQL--------TSLDVGFNTISKLEPELCQKLPMLKV 77

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           LNL  N L      +   C +L  L++ +N I     N       L  L L  N      
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-SSNYY 186
               T V   +L+ + LS+N+   +         + +    N S++      L  SSN  
Sbjct: 138 --LGTQVQLENLQELLLSNNKIQAL-------KSEELDIFANSSLKK-----LELSSNQ- 182

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG---KLNLLKGLNISHNNLTG 243
                 IK         +     + L++ +    + E +        ++ L++S++ L+ 
Sbjct: 183 ------IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236

Query: 244 DIPSSLRNL--TEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295
              ++   L  T +  LDLS N L          L  L    L YN  +     
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  128 bits (324), Expect = 2e-32
 Identities = 67/319 (21%), Positives = 103/319 (32%), Gaps = 38/319 (11%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
           L    L  LDLS N L  +       + QL        +   +  NN             
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQL--------EYFFLEYNNIQHLFSHSLHGLF 296

Query: 64  NLTSLNLNGN---------RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           N+  LNL  +          L      S      LE LN+ +N I     N    L  L+
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 115 VLILRSNRFWGPIGENTTIV--PFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGN 168
            L L ++        N T V      L I++L+ N+ +  + +        +    +  N
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLN 415

Query: 169 NISVEVDYMTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQG--GIPE 223
            I  E+         N    I L+      +      ++     + L     +     P 
Sbjct: 416 EIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 224 VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML--------VGHIPTQLTS 275
               L  L  L++S+NN+       L  L ++E LDL  N L         G     L  
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 276 LKYLSVLNLSYNQFEGPIP 294
           L +L +LNL  N F+    
Sbjct: 535 LSHLHILNLESNGFDEIPV 553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  124 bits (313), Expect = 4e-31
 Identities = 56/311 (18%), Positives = 106/311 (34%), Gaps = 40/311 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L L +N +  I+  P      L          LD+  N  +       V+  NL  L
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNL--------ITLDLSHNGLSSTKLGTQVQLENLQEL 150

Query: 69  NLNGNRLEGPLPPSLVNCHH--LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L+ N+++      L    +  L+ L + +NQI +  P     +  L  L L + +    
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 127 IGENTTI-VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-SSN 184
           + E   + +   S+R + LS+++ +        +     +   N+++       L+ S N
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTS-----NTTFLGLKWTNLTM-------LDLSYN 258

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN----- 239
                   +  +       L       L  N  Q      +  L  ++ LN+  +     
Sbjct: 259 N-------LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 240 ----NLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295
               +L      S + L  +E L++  N + G      T L  L  L+LS +        
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 296 GSQFNTFPNDS 306
              F +  +  
Sbjct: 372 NETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (263), Expect = 1e-24
 Identities = 46/263 (17%), Positives = 80/263 (30%), Gaps = 56/263 (21%)

Query: 62  SCNLTSLNLNG---------------------NRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
           + +    + +                      N+L      +      L  L+VG N I+
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 101 DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN 160
              P   + LP L+VL L+ N        + T     +L  + L  N     +       
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLS--DKTFAFCTNLTELHLMSNSIQK-IKNNPFVK 119

Query: 161 FKAM----MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK 216
            K +    +  N +S      T +   N      L                  + LS+NK
Sbjct: 120 QKNLITLDLSHNGLS-STKLGTQVQLEN------LQ----------------ELLLSNNK 156

Query: 217 FQGGIPEVVGKLNL--LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT 274
            Q    E +       LK L +S N +    P     +  +  L L++  L   +  +L 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 275 ---SLKYLSVLNLSYNQFEGPIP 294
              +   +  L+LS +Q      
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSN 239

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  142 bits (360), Expect = 2e-39
 Identities = 63/321 (19%), Positives = 99/321 (30%), Gaps = 98/321 (30%)

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGN-NQINDNFPN 105
             + G +     ++  + +L+L+G  L    P+P SL N  +L  L +G  N +    P 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 106 WLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165
            +  L +L  L +      G I +   +    +L  +D S+N  +G              
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPD--FLSQIKTLVTLDFSYNALSG-------------- 139

Query: 166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV 225
               +   +  +  L                             I    N+  G IP+  
Sbjct: 140 ---TLPPSISSLPNLVG---------------------------ITFDGNRISGAIPDSY 169

Query: 226 GKL-NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 284
           G    L   + IS N LTG IP +  NL  +  +DLS NML G       S K    ++L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 285 SYNQFEGPIP-----------------------------------------------RGS 297
           + N     +                                                +G 
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 298 QFNTFPNDSYVGNSGLCGFPL 318
               F   +Y  N  LCG PL
Sbjct: 289 NLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  114 bits (287), Expect = 4e-29
 Identities = 47/233 (20%), Positives = 78/233 (33%), Gaps = 51/233 (21%)

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRS-NR 122
            + +       G L  +    + +  L++    +      P+ L  LP L  L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS 182
             GPI     I     L  + ++H   +G                  I   +  +  L  
Sbjct: 89  LVGPIP--PAIAKLTQLHYLYITHTNVSG-----------------AIPDFLSQIKTLV- 128

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
                                     T+D S N   G +P  +  L  L G+    N ++
Sbjct: 129 --------------------------TLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 243 GDIPSSLRNLTE-VESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
           G IP S  + ++   S+ +S N L G IP    +L  L+ ++LS N  EG   
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.6 bits (166), Expect = 8e-13
 Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 3   DLGIATLYYLDLSNNFLT-NIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKF 59
                 L ++DLS N L  +         +              + +  N+    +  K 
Sbjct: 193 TFANLNLAFVDLSRNMLEGDA---SVLFGSDKNTQK--------IHLAKNSLAFDLG-KV 240

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
             S NL  L+L  NR+ G LP  L     L  LNV  N +    P     L    V    
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

Query: 120 SNR 122
           +N+
Sbjct: 300 NNK 302

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (346), Expect = 1e-35
 Identities = 58/293 (19%), Positives = 100/293 (34%), Gaps = 45/293 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
             +L+L N            ++ +L F              +  G      V   +L  L
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTF-------------TSNKGGNAFSEVDLPSLEFL 352

Query: 69  NLNGNRL--EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           +L+ N L  +G    S      L+ L++  N +     N+L  L +L+ L  + +     
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQM 411

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNS 182
             E +  +   +L  +D+SH         G  +   ++    M GN+             
Sbjct: 412 S-EFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
            N                   LT    +DLS  + +   P     L+ L+ LN+SHNN  
Sbjct: 470 RN-------------------LT---FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVLNLSYNQFEGPIP 294
                  + L  ++ LD S N ++     +L      L+ LNL+ N F     
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (294), Expect = 9e-29
 Identities = 48/301 (15%), Positives = 89/301 (29%), Gaps = 33/301 (10%)

Query: 13  DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72
                    I    P N+       +  +  LD+  N         F     L  L+L+ 
Sbjct: 13  QCMELNFYKI----PDNLP-----FSTKN--LDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 73  NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132
             ++     +  +  HL  L +  N I          L  LQ L+            N  
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE--NFP 119

Query: 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS-VEVDYMTPL-NSSNYY 186
           I    +L+ ++++HN      L  Y  N   +    +  N I  +    +  L       
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 187 ESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK-------LNLLKGLNI 236
            S+ L+   +  I     + + +   + L +N     + +   +         L+ G   
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 237 SHNNLTGDIPSSLRNLTEVESLDLSSNML---VGHIPTQLTSLKYLSVLNLSYNQFEGPI 293
           +  NL     S+L  L  +   +     L   +  I      L  +S  +L     E   
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 294 P 294
            
Sbjct: 299 D 299

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (293), Expect = 1e-28
 Identities = 51/333 (15%), Positives = 101/333 (30%), Gaps = 29/333 (8%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           +   LDLS N L ++  +   +  +L        +VLD+            +    +L++
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLST 80

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L L GN ++     +      L+ L      +       +  L  L+ L +  N      
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-F 139

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM--------MHGNNISVEVD---- 175
                     +L  +DLS N+    +    L     M        +  N ++        
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 176 --YMTPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232
              +  L   +N+    ++      +    +  + +    +    +      +  L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 233 GLNISHNNL---TGDIPSSLRNLTEVESLDLSSNMLVGHIP-TQLTSLKYLSVLNLSYNQ 288
                   L     DI      LT V S  L S  +      +     ++L ++N  + Q
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 289 FEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLES 321
           F     +  +  TF ++           P LE 
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (282), Expect = 4e-27
 Identities = 53/293 (18%), Positives = 100/293 (34%), Gaps = 47/293 (16%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK 61
           + + +L +LDLS N L+       +    T L        K LD+  N     +   F+ 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL--------KYLDLSFNGVIT-MSSNFLG 394

Query: 62  SCNLTSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
              L  L+   + L+     S  ++  +L  L++ +      F      L  L+VL +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS-VEVD 175
           N F      +       +L  +DLS  +    L     ++  ++    M  NN   ++  
Sbjct: 455 NSFQENFLPD-IFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 176 YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL-NLLKGL 234
               LNS        L +                +D S N       + +    + L  L
Sbjct: 513 PYKCLNS--------LQV----------------LDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 235 NISHNNLTGDIPSS--LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285
           N++ N+          L+ + +   L +    +    P+    +  LS LN++
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS-LNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (279), Expect = 9e-27
 Identities = 57/295 (19%), Positives = 97/295 (32%), Gaps = 33/295 (11%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSC 63
           G+A L    L      N       + + L    NLT +   +   + +   I   F    
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           N++S +L    +E             + L + N +        L+ L  L     +    
Sbjct: 283 NVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-S 182
                   + V  PSL  +DLS N  +        D           S++      L+ S
Sbjct: 341 -------FSEVDLPSLEFLDLSRNGLSFKGCCSQSD-------FGTTSLKY-----LDLS 381

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNISHNNL 241
            N   ++     G    +E++      +D   +  +      V   L  L  L+ISH + 
Sbjct: 382 FNGVITMSSNFLG----LEQLE----HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSVLNLSYNQFEGPIPR 295
                     L+ +E L ++ N    +  P   T L+ L+ L+LS  Q E   P 
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  131 bits (331), Expect = 2e-33
 Identities = 49/309 (15%), Positives = 105/309 (33%), Gaps = 31/309 (10%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNG-KIPRKFVKSCNLT 66
           L  L+++ N   +            + +      ++  M  NN           K   L 
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG 576

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L+   N++      +      L  L +  NQI +   ++     +++ L    N+    
Sbjct: 577 LLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY- 633

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVL--LTGYLDNFKAM------MHGNNISV----EV 174
           I           +  +D S+N+       ++  +D++K +      +  N I        
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 175 DYMTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE--VVGKL 228
              +P++    S+N   SI            +   +  TIDL  NK    + +      L
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL 752

Query: 229 NLLKGLNISHNNLTGDIPSSLRNLTEVESLDL------SSNMLVGHIPTQLTSLKYLSVL 282
             L  +++S+N  +   P+   N +++++  +        N ++   PT +T+   L  L
Sbjct: 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 283 NLSYNQFEG 291
            +  N    
Sbjct: 812 QIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  118 bits (296), Expect = 8e-29
 Identities = 38/299 (12%), Positives = 83/299 (27%), Gaps = 55/299 (18%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  +  +N+  T                  +  +  +             +    +LT +
Sbjct: 450 LQIIYFANSPFTYD---NIA----------VDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND---------NFPNWLEILPELQVLILR 119
            L        LP  L +   L+ LN+  N+               +  +  P++Q+  + 
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-MMHGNNISVEVDYMT 178
            N        + ++     L ++D  HN+   +   G         +  N I        
Sbjct: 557 YNNLEE-FPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE------- 608

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLNI 236
                            I             +  S NK +  IP +    ++  +  ++ 
Sbjct: 609 ----------------EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDF 651

Query: 237 SHNNLTGDIPS-----SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
           S+N +  +  +              ++ LS N +         +   +S + LS N   
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (280), Expect = 9e-27
 Identities = 45/306 (14%), Positives = 91/306 (29%), Gaps = 44/306 (14%)

Query: 9   LYYLDLSNNFLTNIEYFP-PTNMTQLNFDSN-LTH------------KVLDMRMNNFNGK 54
           L  LD  +N + ++E F     +T L  D N +              + L    N     
Sbjct: 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 55  IPRKFVKSC-NLTSLNLNGNRLEG-----PLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
                 KS   + S++ + N++                 +   + +  N+I         
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 109 ILPELQVLILRSNRF-----WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
               +  +IL +N            ++        L  IDL  N+ T +           
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 164 MMHGNNISVEVDYMTPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222
           + +             ++ S N + S       ++    +   I    D   N+     P
Sbjct: 755 LSN-------------MDVSYNCFSSFPTQP--LNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 223 EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282
             +     L  L I  N++   +   L    ++  LD++ N  +    T +       + 
Sbjct: 800 TGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

Query: 283 NLSYNQ 288
            L Y++
Sbjct: 857 VLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (271), Expect = 1e-25
 Identities = 43/294 (14%), Positives = 93/294 (31%), Gaps = 31/294 (10%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
           LD  N    +       +    NF+  L         + +  +       +  +T L+L 
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKEL---------DMWGDQPGVDLDNNGRVTGLSLA 331

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
           G   +G +P ++     L+VL+ G +    +   + +      +   R +R      +  
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY-KKM 390

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191
            +     L + DL  +          +          +  + +      N +N    I  
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKK--------DSRISLKDTQIGNLTNRITFISK 442

Query: 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN 251
            I+         LT    I  +++ F      V       +  N  +     +   S  N
Sbjct: 443 AIQR--------LTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWSN 489

Query: 252 LTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPND 305
           L ++  ++L +   +  +P  L  L  L  LN++ N+        + +    +D
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.1 bits (226), Expect = 6e-20
 Identities = 34/306 (11%), Positives = 82/306 (26%), Gaps = 76/306 (24%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           +  L L+       +   P  + QL   + L    L    ++          +       
Sbjct: 325 VTGLSLAGF---GAKGRVPDAIGQL---TELKV--LSFGTHSETVSGRLFGDEELTPDMS 376

Query: 69  NLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
               +R+        L     L + ++  + IN N    ++ + +   + L+  +    +
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGN-L 433

Query: 128 GENTTIVP-----FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS 182
               T +         L+II  +++ FT   +    ++                      
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED---------------------- 471

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
                                       +    K           L  L  + + +    
Sbjct: 472 ---------------------------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 243 GDIPSSLRNLTEVESLDLSSNMLVG---------HIPTQLTSLKYLSVLNLSYNQFEGPI 293
             +P  L +L E++SL+++ N  +           +     +   + +  + YN  E   
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-F 563

Query: 294 PRGSQF 299
           P  +  
Sbjct: 564 PASASL 569

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.8 bits (220), Expect = 4e-19
 Identities = 39/295 (13%), Positives = 87/295 (29%), Gaps = 66/295 (22%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS-CNLTS 67
           L  L    +  T           +L  D  LT  + + R +       + F+     L  
Sbjct: 349 LKVLSFGTHSETVSG--------RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
            +L  + +     P +        +++ + QI +   N +  + +               
Sbjct: 401 SDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLT-NRITFISK--------------- 442

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYE 187
                I     L+II  +++ FT   +    ++                    + +  YE
Sbjct: 443 ----AIQRLTKLQIIYFANSPFTYDNIAVDWEDAN-----------------SDYAKQYE 481

Query: 188 SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG---- 243
           +  L+           L     ++L +      +P+ +  L  L+ LNI+ N        
Sbjct: 482 NEELSWSN--------LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

Query: 244 -----DIPSSLRNLTEVESLDLSSNMLVG-HIPTQLTSLKYLSVLNLSYNQFEGP 292
                 +        +++   +  N L        L  +  L +L+  +N+    
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 1/110 (0%)

Query: 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN 263
             I+  +D  + ++  G              N   +         L N   V  L L+  
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333

Query: 264 MLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGL 313
              G +P  +  L  L VL+   +               P+ S      +
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 13/116 (11%), Positives = 28/116 (24%), Gaps = 28/116 (24%)

Query: 9   LYYLDLSNNFLTNI--EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK----- 61
           L  +D+S N  ++   +    + +              D   N    + P          
Sbjct: 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR-----DAEGNRILRQWPTGITTCPSLI 809

Query: 62  ----SCN------------LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
                 N            L  L++  N        S+       +  +  ++  D
Sbjct: 810 QLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  130 bits (328), Expect = 4e-33
 Identities = 54/306 (17%), Positives = 95/306 (31%), Gaps = 39/306 (12%)

Query: 9   LYYLDLSNNFLTNIEYFP--PTNMTQLNFDSNLTHKVLDMRMNNF-NGKIPRKFVKSCNL 65
           +  ++++ N   + E        +        +   ++ +  NN     +     K   L
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQ--IIYIGYNNLKTFPVETSLQKMKKL 332

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             L    N+LEG   P+  +   L  LN+  NQI +   N+     +++ L    N+   
Sbjct: 333 GMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-K 390

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-SSN 184
            I           +  ID S+NE    +     D          I+V       +N S+N
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTP-FKGINVSS-----INLSNN 443

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG-------GIPEVVGKLNLLKGLNIS 237
                   +           +   +I+L  N              E      LL  +++ 
Sbjct: 444 QISKFPKELFST-------GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 238 HNNLTGDIPSSLR--NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL------NLSYNQF 289
            N LT  +    R   L  +  +DLS N      PTQ  +   L         +   N+ 
Sbjct: 497 FNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 290 EGPIPR 295
               P 
Sbjct: 555 LREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  129 bits (325), Expect = 9e-33
 Identities = 48/295 (16%), Positives = 89/295 (30%), Gaps = 42/295 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSC-NLT 66
           L  L+L+ N +T I   P       NF       + L    N           KS   ++
Sbjct: 355 LASLNLAYNQITEI---PA------NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 67  SLNLNGNRLEG-------PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
           +++ + N +         PL P+     ++  +N+ NNQI+            L  + L 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 120 SNRFWGPIGENTTIVPF-----PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV 174
            N        +             L  IDL  N+ T +           ++         
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG-------- 517

Query: 175 DYMTPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233
                ++ S N +         ++    +   I    D   N+     PE +     L  
Sbjct: 518 -----IDLSYNSFSKFPTQP--LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
           L I  N++         N+     LD+  N  +    + +       +  L Y++
Sbjct: 571 LQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (317), Expect = 1e-31
 Identities = 50/304 (16%), Positives = 92/304 (30%), Gaps = 49/304 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC-NL 65
           L  L+   N L       P   +  +L          L++  N     IP  F      +
Sbjct: 332 LGMLECLYNQLEGK---LPAFGSEIKL--------ASLNLAYNQITE-IPANFCGFTEQV 379

Query: 66  TSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-------LQVLI 117
            +L+   N+L+  P      +   +  ++   N+I        + L         +  + 
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM 177
           L +N+      E         L  I+L  N  T +      D  +     N   +     
Sbjct: 440 LSNNQISKFPKE--LFSTGSPLSSINLMGNMLTEIPKNSLKDENENF--KNTYLLTS--- 492

Query: 178 TPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236
             ++   N    +    +         L   + IDLS N F    P      + LKG  I
Sbjct: 493 --IDLRFNKLTKLSDDFRATT------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543

Query: 237 SH------NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
            +      N    + P  +     +  L + SN +   +  ++     +SVL++  N   
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNI 600

Query: 291 GPIP 294
               
Sbjct: 601 SIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  120 bits (302), Expect = 1e-29
 Identities = 45/309 (14%), Positives = 97/309 (31%), Gaps = 48/309 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
              +   +N +T +       + +L   + L      M  + F  +   +  ++ N    
Sbjct: 185 DTQIGQLSNNITFV----SKAVMRL---TKLRQ--FYMGNSPFVAENICEAWENENSEYA 235

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-- 126
                           N   L  + V N       P +L+ LPE+Q++ +  NR      
Sbjct: 236 QQYKT-----EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 127 ----IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMT 178
                           ++II + +N      +   L   K +       N +  ++    
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350

Query: 179 PLN-------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV--VGKLN 229
                     + N    I     G   ++E +         + NK +  IP +     ++
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENL-------SFAHNKLKY-IPNIFDAKSVS 402

Query: 230 LLKGLNISHNNLTG-------DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282
           ++  ++ S+N +          +  +      V S++LS+N +        ++   LS +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 283 NLSYNQFEG 291
           NL  N    
Sbjct: 463 NLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  108 bits (273), Expect = 6e-26
 Identities = 33/319 (10%), Positives = 90/319 (28%), Gaps = 64/319 (20%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           I+     +       + +        + +F S+L      +  +     I +    +   
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDF-SDLIK--DCINSDPQQKSIKKSSRITLKD 185

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI-------------------NDNFPNW 106
           T +    N +   +  +++    L    +GN+                            
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 107 LEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166
            + L +L  + + +      +     +   P +++I+++ N                   
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISG-------------- 288

Query: 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-IPEVV 225
                               +   L    +  K++        I +  N  +   +   +
Sbjct: 289 ---------------EQLKDDWQALADAPVGEKIQ-------IIYIGYNNLKTFPVETSL 326

Query: 226 GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285
            K+  L  L   +N L G    +  +  ++ SL+L+ N +           + +  L+ +
Sbjct: 327 QKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 286 YNQFEGPIPRGSQFNTFPN 304
           +N+ +  IP      +   
Sbjct: 386 HNKLKY-IPNIFDAKSVSV 403

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  104 bits (261), Expect = 2e-24
 Identities = 36/304 (11%), Positives = 85/304 (27%), Gaps = 57/304 (18%)

Query: 9   LYYLDLSNNFLTNIEYFPP--TNMTQLNFDSNLTHKVLDMRMNNFNG----KIPRKFVKS 62
           +  L L     +     P     +T+L        +VL +  +          P+    +
Sbjct: 83  VTGLSLEGFGASGR--VPDAIGQLTEL--------EVLALGSHGEKVNERLFGPKGISAN 132

Query: 63  CNLTSLNLNGNRLEGPLPPSL--VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
            +           +          +   L    + ++    +      I  +   +   S
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 121 NRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP 179
           N            ++    LR   + ++ F    +    +N                   
Sbjct: 193 NNITFVS----KAVMRLTKLRQFYMGNSPFVAENICEAWENEN----------------- 231

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
              +  Y++  L            L     +++ +      +P  +  L  ++ +N++ N
Sbjct: 232 SEYAQQYKTEDLKWDN--------LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 240 NLT--------GDIPSSLRNLTEVESLDLSSNML-VGHIPTQLTSLKYLSVLNLSYNQFE 290
                          +      +++ + +  N L    + T L  +K L +L   YNQ E
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 291 GPIP 294
           G +P
Sbjct: 344 GKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  104 bits (261), Expect = 2e-24
 Identities = 42/298 (14%), Positives = 88/298 (29%), Gaps = 46/298 (15%)

Query: 9   LYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK--FVKSCNL 65
           L  L L ++    N   F P  ++    D             ++              +L
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ-----KQKMRMHYQKTFVDYDPREDFSDL 161

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
               +N +  +  +  S         +   +N I       +  L +L+   + ++ F  
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVA 220

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
                       +    +  + +          DN K +               + +   
Sbjct: 221 EN-------ICEAWENENSEYAQQYKTEDLK-WDNLKDLTDVE-----------VYNCPN 261

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKF--------QGGIPEVVGKLNLLKGLNIS 237
              +   +K         L     I+++ N+                      ++ + I 
Sbjct: 262 LTKLPTFLKA--------LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 238 HNNL-TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
           +NNL T  + +SL+ + ++  L+   N L G +P    S   L+ LNL+YNQ      
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPA 370

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 30/246 (12%), Positives = 71/246 (28%), Gaps = 32/246 (13%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILR 119
            +T L+L G    G +P ++     LEVL +G++    N     P  +      +     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL-DNFKAMMHGNNISVEVDYMT 178
              +         +   P     DL  +          +  + +  +    I        
Sbjct: 142 RMHYQKTF-----VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG------- 189

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
               SN    +   +          LT      + ++ F         +          +
Sbjct: 190 --QLSNNITFVSKAVMR--------LTKLRQFYMGNSPFVAENICEAWENENS-----EY 234

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQ 298
                       NL ++  +++ +   +  +PT L +L  + ++N++ N+          
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 299 FNTFPN 304
           +    +
Sbjct: 295 WQALAD 300

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 35/254 (13%), Positives = 72/254 (28%), Gaps = 53/254 (20%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFD-SNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           +  +D S N + +++      +    F   N++   +++  N  +      F     L+S
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS--SINLSNNQISKFPKELFSTGSPLSS 461

Query: 68  LNLNGNRLEG-------PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI-LPELQVLILR 119
           +NL GN L             +  N + L  +++  N++     ++    LP L  + L 
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 120 SNRFWG---PIGENTTIVPFPSLRIIDLSHNEFTGVL------LTG--YLDNFKAMMHGN 168
            N F         ++T+  F      D   N                  L      +  N
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ-----IGSN 576

Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
           +I                  +           E+I      +D+  N         V   
Sbjct: 577 DIR----------------KVN----------EKITPNISVLDIKDNPNISIDLSYVCPY 610

Query: 229 NLLKGLNISHNNLT 242
                  + ++   
Sbjct: 611 IEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 219 GGIPEV-VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG----HIPTQL 273
           G  P V +     + GL++     +G +P ++  LTE+E L L S+          P  +
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 274 TSLKYLSVLNLSYNQFEGPIPRGSQFNTFPN---DSYVGNSGLCGFPLLESCN 323
           ++             ++           F +   D    +             
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 12/115 (10%), Positives = 32/115 (27%), Gaps = 6/115 (5%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNM 264
            + L      G +P+ +G+L  L+ L +  +    +     P  +      E        
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 265 LVGHIPTQLTSLKY--LSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFP 317
                        +  L    ++ +  +  I + S+           ++ +    
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 13/60 (21%), Positives = 19/60 (31%)

Query: 235 NISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
           N   +        SL +   V  L L      G +P  +  L  L VL L  +  +    
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 12/116 (10%), Positives = 29/116 (25%), Gaps = 28/116 (24%)

Query: 9   LYYLDLSNNFLTNI--EYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK----- 61
           L  +DLS N  +    +    + +      +       D + N    + P          
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR-----DAQGNRTLREWPEGITLCPSLT 569

Query: 62  ----SCN------------LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
                 N            ++ L++  N         +       +  +  ++  D
Sbjct: 570 QLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (313), Expect = 3e-31
 Identities = 61/308 (19%), Positives = 113/308 (36%), Gaps = 25/308 (8%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           ++  ++L  ++  NI        + L        + LD+   + + ++P   V    L  
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGL--------QELDLTATHLS-ELPSGLVGLSTLKK 305

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNV-GNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           L L+ N+ E     S  N   L  L++ GN +  +     LE L  L+ L L  +     
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA----MMHGNNISVEVDYMTPLNS 182
              N  +     L+ ++LS+NE    L T             +    +    D  +P  +
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLK-VKDAQSPFQN 423

Query: 183 SNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG---KLNLLKGLNI 236
            +  + + L+   +     ++   L     ++L  N F  G  +       L  L+ L +
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
           S  +L+     +  +L  +  +DLS N L       L+ LK +  LNL+ N     +P  
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP-- 540

Query: 297 SQFNTFPN 304
           S       
Sbjct: 541 SLLPILSQ 548

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (312), Expect = 5e-31
 Identities = 61/318 (19%), Positives = 113/318 (35%), Gaps = 33/318 (10%)

Query: 8   TLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTH---------------KVLDMRMNN 50
           T   L+L+ N +  IE   F       LNF                      +      +
Sbjct: 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 51  FNGKIPRKFVKSC--NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
                P  F   C  ++ S+NL  +        +      L+ L++    ++   P+ L 
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM---- 164
            L  L+ L+L +N+F        +   FPSL  + +  N     L TG L+N + +    
Sbjct: 299 GLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 165 MHGNNISVEVDYMTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGI 221
           +  ++I         L + ++ +S+ L+      +  +  +       +DL+  + +   
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 222 PEVV-GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI---PTQLTSLK 277
            +     L+LLK LN+SH+ L          L  ++ L+L  N            L +L 
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 278 YLSVLNLSYNQFEGPIPR 295
            L +L LS+         
Sbjct: 477 RLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  123 bits (311), Expect = 6e-31
 Identities = 55/299 (18%), Positives = 99/299 (33%), Gaps = 24/299 (8%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           +   L+ S N L  I+    + +  L          LD+            F     L +
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINL--------TFLDLTRCQIYWIHEDTFQSQHRLDT 85

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L L  N L      +L     L+ L      I+      L     L+ L L SN      
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM------MHGNNISV---EVDYMT 178
                  P   L+++D  +N     L    + + +        ++GN+I+          
Sbjct: 146 --LPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLNI 236
              S N+  +  L +    +K   I ++           +   P V   L    ++ +N+
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSL-WLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

Query: 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295
             +       ++    + ++ LDL++  L   +P+ L  L  L  L LS N+FE     
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (303), Expect = 7e-30
 Identities = 48/291 (16%), Positives = 93/291 (31%), Gaps = 30/291 (10%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L L+ N L  +     +    L        K L       +            L SL
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKAL--------KHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV--LILRSNRFWGP 126
            L  N +     P       L+VL+  NN I+      +  L +     L L  N   G 
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG- 193

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
                        + ++    +   V+  G        +  + I         L    + 
Sbjct: 194 --IEPGAFDSAVFQSLNFGGTQNLLVIFKG--------LKNSTIQS-------LWLGTFE 236

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246
           +     I     +    +++  +I+L  + F           + L+ L+++  +L+ ++P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVE-SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294

Query: 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS 297
           S L  L+ ++ L LS+N          ++   L+ L++  N     +  G 
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (269), Expect = 2e-25
 Identities = 47/296 (15%), Positives = 90/296 (30%), Gaps = 27/296 (9%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
            +  N  L  I   P          ++     L+   N         F +  NLT L+L 
Sbjct: 17  YNCENLGLNEI---PG------TLPNSTEC--LEFSFNVLPTIQNTTFSRLINLTFLDLT 65

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
             ++      +  + H L+ L +  N +       L     L+ L            +  
Sbjct: 66  RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI--DFI 123

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLT--GYLDNFKAM-MHGNNIS-VEVDYMTPLNSSNYYE 187
            +    +L  + L  N  + + L      +  K +    N I  +  + M+ L  +    
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183

Query: 188 SIIL---TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL--LKGLNISHNNLT 242
            + L    I GI+         F +++    +    I + +    +  L        +  
Sbjct: 184 -LNLNGNDIAGIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

Query: 243 GDIPSSLRNLTE--VESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
              P+    L E  VES++L  +               L  L+L+       +P G
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSG 296

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 53/262 (20%), Positives = 94/262 (35%), Gaps = 37/262 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPT--NMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           L  LDLS++ +   +       N++ L        + L++  N         F +   L 
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHL--------QSLNLSYNEPLSLKTEAFKECPQLE 403

Query: 67  SLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF-W 124
            L+L   RL+     S   N H L+VLN+ ++ ++ +     + LP LQ L L+ N F  
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPL 180
           G I +  ++     L I+ LS  + +  +      + K M    +  N ++         
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ-------------------GGI 221
               Y       I  I   +  IL+   TI+L  N                         
Sbjct: 523 LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDT 582

Query: 222 PEVV-GKLNLLKGLNISHNNLT 242
            + +     LL+G+ +S   L+
Sbjct: 583 EDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 37/258 (14%), Positives = 66/258 (25%), Gaps = 51/258 (19%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
                + N     L   +P +L N    E L    N +          L  L  L L   
Sbjct: 11  KEVNKTYNCENLGLNE-IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC 67

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN 181
           + +       T      L  + L+ N     +    L   KA                  
Sbjct: 68  QIYWI--HEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKA------------------ 106

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
                                 L     +              +     L+ L +  N++
Sbjct: 107 ----------------------LK---HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV--LNLSYNQFEGPIPRGSQF 299
           +           +++ LD  +N +       ++SL+  +   LNL+ N   G  P     
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 300 NTFPNDSYVGNSGLCGFP 317
             F + ++ G   L    
Sbjct: 202 AVFQSLNFGGTQNLLVIF 219

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 14/150 (9%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK---FVK 61
            +  L  L+LS++ L          +  L        + L+++ N+F     +K      
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPAL--------QHLNLQGNHFPKGNIQKTNSLQT 474

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
              L  L L+   L      +  +   +  +++ +N++  +    L  L  +  L L SN
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151
                +     +      R I+L  N    
Sbjct: 534 HISIILPS--LLPILSQQRTINLRQNPLDC 561

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (298), Expect = 3e-29
 Identities = 64/298 (21%), Positives = 103/298 (34%), Gaps = 44/298 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN---------LTH-KVLDMRMNNFNGKIPR 57
           +  + L+   +  +E  P       L+             L   K L + MN   G I  
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK--GSISF 344

Query: 58  KFVKSCNLTSLNLNGNRLE--GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
           K V   +L+ L+L+ N L   G    S +  + L  L++  N            L ELQ 
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403

Query: 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS 171
           L  + +     + E +  +    L  +D+S+         G      ++    M GN+  
Sbjct: 404 LDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFK 461

Query: 172 VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231
                    N++N                   LT    +DLS  + +     V   L+ L
Sbjct: 462 DNTLSNVFANTTN-------------------LT---FLDLSKCQLEQISWGVFDTLHRL 499

Query: 232 KGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           + LN+SHNNL     S    L  + +LD S N +           K L+  NL+ N  
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (287), Expect = 9e-28
 Identities = 49/303 (16%), Positives = 99/303 (32%), Gaps = 28/303 (9%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +A L+   L      +         + +    ++T     +   N       KF    N
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
           +++++L G  ++      +      + L++   Q+          LP L+ L L  N+  
Sbjct: 287 VSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNK-- 339

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFT----GVLLTGYLDNFKAM-MHGNNISVEVDYMTP 179
                +   V  PSL  +DLS N  +            ++ + + +  N   +       
Sbjct: 340 --GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 180 LN-------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232
           L          +  + +       +      L   + +D+S    +     +   L  L 
Sbjct: 398 LEELQHLDFQHSTLKRV------TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 233 GLNISHNNLTGDIPSS-LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 291
            L ++ N+   +  S+   N T +  LDLS   L         +L  L +LN+S+N    
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

Query: 292 PIP 294
              
Sbjct: 512 LDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (280), Expect = 7e-27
 Identities = 48/297 (16%), Positives = 99/297 (33%), Gaps = 32/297 (10%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
               +  L+ +   P       +  S+  +  +D+  N         F     L  L+L+
Sbjct: 16  YQCMDQKLSKV---PD------DIPSSTKN--IDLSFNPLKILKSYSFSNFSELQWLDLS 64

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
              +E     +    HHL  L +  N I    P     L  L+ L+    +       + 
Sbjct: 65  RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE--SF 122

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS-VEVDYMTPL-NSSNY 185
            I    +L+ ++++HN      L  Y  N   +    +  N I  + V+ +  L  +   
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 186 YESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK-------LNLLKGLN 235
             S+ ++   I  I  +  + + +   + L  N     I +   +         L+ G  
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 236 ISHNNLTGDIPSSLRNLTE--VESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
               NL    PS +  L +  ++   L+          +   L  +S ++L+    +
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (269), Expect = 2e-25
 Identities = 44/302 (14%), Positives = 97/302 (32%), Gaps = 29/302 (9%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           ++   +DLS N L  ++ +  +N ++L        + LD+          + +    +L+
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSEL--------QWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           +L L GN ++   P S      LE L     ++       +  L  L+ L +  N     
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS- 142

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM--------MHGNNIS-VEVDYM 177
                      +L  +DLS+N     +    L   +          M  N I  ++    
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 178 TPLN------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231
             +         N+  S I+     ++    +  + +         +   P ++  L  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 232 KG--LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
                 +++ N   D       L  V ++ L+   +       +        L++   Q 
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL 319

Query: 290 EG 291
           + 
Sbjct: 320 KQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 32/147 (21%), Positives = 49/147 (33%), Gaps = 11/147 (7%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC- 63
            +  L YLD+S              +T L          L M  N+F          +  
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSL--------NTLKMAGNSFKDNTLSNVFANTT 473

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           NLT L+L+  +LE          H L++LN+ +N +     +    L  L  L    NR 
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFT 150
                         SL   +L++N   
Sbjct: 534 ETSK--GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 19/168 (11%)

Query: 2   WDLGIATLYYLDLSNNFLTNIEYFPP--TNMTQLNFDSN-------------LTH-KVLD 45
            DLG  +L +LDLS N    +         +  L+F  +             L     LD
Sbjct: 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 46  MRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFP 104
           +   N        F+   +L +L + GN  +     +   N  +L  L++   Q+     
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 105 NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
              + L  LQ+L +  N        ++      SL  +D S N     
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLD--SSHYNQLYSLSTLDCSFNRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            +DLS  + +    +    L+ L  L ++ N +    P S   LT +E+L      L   
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 269 IPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPN 304
               +  L  L  LN+++N         + F+   N
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTN 154

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 16/86 (18%), Positives = 29/86 (33%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            IDLS N  +          + L+ L++S   +      +   L  + +L L+ N +   
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95

Query: 269 IPTQLTSLKYLSVLNLSYNQFEGPIP 294
            P   + L  L  L     +      
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLES 121

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (274), Expect = 5e-26
 Identities = 53/317 (16%), Positives = 105/317 (33%), Gaps = 42/317 (13%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSC 63
            + T   L LS N++  +       + QL        ++L++        I ++ F    
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQL--------QLLELGSQYTPLTIDKEAFRNLP 73

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSN 121
           NL  L+L  +++    P +     HL  L +    ++D      +   L  L  L L  N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM------MHGNNISVEVD 175
           +    +  + +     SL+ ID S N+   ++    L+  +        +  N++     
Sbjct: 134 QIRS-LYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLY-SRV 190

Query: 176 YMTPLNSSNYYESIILT--------------------IKGIDIKMERILTIFMTIDLSSN 215
            +      N + +++L                     I         +    M      +
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 216 KFQGGIPEVVGKLNL--LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQL 273
             +         L    ++ L++SH  +          L +++ L+L+ N +        
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 274 TSLKYLSVLNLSYNQFE 290
             L  L VLNLSYN   
Sbjct: 311 YGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  103 bits (258), Expect = 6e-24
 Identities = 62/288 (21%), Positives = 101/288 (35%), Gaps = 44/288 (15%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           ++ +LDLS+ F+ ++       +  L        KVL++  N  N      F    NL  
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDL--------KVLNLAYNKINKIADEAFYGLDNLQV 318

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           LNL+ N L      +      +  +++  N I        + L +LQ L LR N      
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL---- 374

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYE 187
              TTI   PS+  I LS N+    L    L      +  N +         L   +   
Sbjct: 375 ---TTIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPH--- 427

Query: 188 SIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTGDIP 246
              L I                + L+ N+F     +    +   L+ L +  N L     
Sbjct: 428 ---LQI----------------LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 247 SSL-----RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           + L       L+ ++ L L+ N L    P   + L  L  L+L+ N+ 
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (257), Expect = 8e-24
 Identities = 54/310 (17%), Positives = 99/310 (31%), Gaps = 42/310 (13%)

Query: 10  YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN 69
                    LT +    P  +           + L +  N         F     L  L 
Sbjct: 7   RIAFYRFCNLTQV----PQVLNTT--------ERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 70  LNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           L        +   +  N  +L +L++G+++I    P+  + L  L  L L        + 
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS-VEVDYMTPLN-- 181
           ++       +L  +DLS N+   + L        ++       N I  V    + PL   
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174

Query: 182 -------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF------------QGGIP 222
                  ++N   S +    G  +   R +     +D+S N +                 
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMV-LEILDVSGNGWTVDITGNFSNAISKSQA 233

Query: 223 EVVGKLNLLKGLNISHNNLTGDIPSSLRNL--TEVESLDLSSNMLVGHIPTQLTSLKYLS 280
             +   + + G     +N+     ++   L  + V  LDLS   +         +LK L 
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293

Query: 281 VLNLSYNQFE 290
           VLNL+YN+  
Sbjct: 294 VLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 96.4 bits (240), Expect = 1e-21
 Identities = 54/300 (18%), Positives = 100/300 (33%), Gaps = 28/300 (9%)

Query: 8   TLYYLDLSNNFLTNIEYF----PPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
            L  LD+S N  T           +     +              +N        F    
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 64  --NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
             ++  L+L+   +             L+VLN+  N+IN         L  LQVL L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYM 177
                   ++     P +  IDL  N    ++        + +    +  N ++  + ++
Sbjct: 325 LL--GELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-TIHFI 380

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLNI 236
             +       + ++T+  I++           I LS N+ +   I   + ++  L+ L +
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTAN-------LIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 237 SHNNLTGDIPSSL-RNLTEVESLDLSSNMLVGHIPTQL-----TSLKYLSVLNLSYNQFE 290
           + N  +             +E L L  NML     T+L       L +L VL L++N   
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.6 bits (225), Expect = 9e-20
 Identities = 53/320 (16%), Positives = 108/320 (33%), Gaps = 31/320 (9%)

Query: 4   LGIATLYYLDLSNNFLTNIE---------YFPPTNMTQLNFDSN-LTHKVLDMRMNNFNG 53
           L   TL +  L+ N L +            F    +  L+   N  T  +     N  + 
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 54  KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH--LEVLNVGNNQINDNFPNWLEILP 111
                 + + ++       + ++ P   +        +  L++ +  +        E L 
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 112 ELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH----G 167
           +L+VL L  N+    I  +       +L++++LS+N     L +        + +     
Sbjct: 291 DLKVLNLAYNKINK-I-ADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQK 347

Query: 168 NNIS-VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226
           N+I+ ++      L          L ++   +     +     I LS NK    +P++  
Sbjct: 348 NHIAIIQDQTFKFLEKLQT-----LDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINL 401

Query: 227 KLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNL 284
             NL   +++S N L   DI   L  +  ++ L L+ N        Q  +    L  L L
Sbjct: 402 TANL---IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 285 SYNQFEGPIPRGSQFNTFPN 304
             N  +        ++ F  
Sbjct: 459 GENMLQLAWETELCWDVFEG 478

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 23/186 (12%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPP------------TNMTQLNFDSNLTH-KVLDMRMNNF 51
            I ++  + LS N L  +                  N+  L F   + H ++L +  N F
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438

Query: 52  NGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSL-----VNCHHLEVLNVGNNQINDNFPN 105
           +     +   ++ +L  L L  N L+      L         HL+VL + +N +N   P 
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498

Query: 106 WLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM 165
               L  L+ L L SNR    +   +      +L I+D+S N+        ++      +
Sbjct: 499 VFSHLTALRGLSLNSNR----LTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDI 554

Query: 166 HGNNIS 171
             N   
Sbjct: 555 THNKFI 560

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (263), Expect = 2e-25
 Identities = 62/295 (21%), Positives = 112/295 (37%), Gaps = 33/295 (11%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKIP 56
           L YL+L+ N +T+I        +T L   +N          LT+ + L +  +N +   P
Sbjct: 68  LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP 127

Query: 57  RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116
                   + SLNL  N         L N   L  L V  +++ D  P  +  L +L  L
Sbjct: 128 --LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISV--E 173
            L  N+    I + + +    SL       N+ T +     +    ++ +  N I+    
Sbjct: 183 SLNYNQ----IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP 238

Query: 174 VDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233
           +  ++ L       + I  I  +       LT    +++ SN+       V+  L+ L  
Sbjct: 239 LANLSQLTWLEIGTNQISDINAVKD-----LTKLKMLNVGSNQISD--ISVLNNLSQLNS 291

Query: 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
           L +++N L  +    +  LT + +L LS N +    P  L SL  +   + +   
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 3e-24
 Identities = 64/302 (21%), Positives = 113/302 (37%), Gaps = 33/302 (10%)

Query: 8   TLYYLDLSNNFLTNIEYF-PPTNMTQLNFDSN----------LTH-KVLDMRMNNFNGKI 55
           ++  L ++   + +I+     TN+  LN + N          L     L +  N      
Sbjct: 45  SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TD 102

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
                   NL  L LN + +       L N   +  LN+G N    +  + L  +  L  
Sbjct: 103 ISALQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNY 159

Query: 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS--V 172
           L +  ++    + + T I     L  + L++N+   +     L +      + N I+   
Sbjct: 160 LTVTESK----VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215

Query: 173 EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232
            V  MT LNS     + I  +  +       L+    +++ +N+        V  L  LK
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSPLAN-----LSQLTWLEIGTNQISD--INAVKDLTKLK 268

Query: 233 GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292
            LN+  N ++    S L NL+++ SL L++N L       +  L  L+ L LS N     
Sbjct: 269 MLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 293 IP 294
            P
Sbjct: 327 RP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.5 bits (223), Expect = 4e-20
 Identities = 57/305 (18%), Positives = 110/305 (36%), Gaps = 53/305 (17%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYF-PPTNMTQLNFDSN----------LTH-KVLDMRMNN 50
           D  +A      L    +T++       ++T+L               LT+ + L++  N 
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ 77

Query: 51  FNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEIL 110
                P        LT+L +  N++      +L N  +L  L +  + I+D  P  L  L
Sbjct: 78  ITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANL 131

Query: 111 PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNN 169
            ++  L L +N     + + + +     L  + ++ ++   V     L +  ++ ++ N 
Sbjct: 132 TKMYSLNLGANHN---LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ 188

Query: 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229
           I      ++PL S                     LT         N+     P  V  + 
Sbjct: 189 IED----ISPLAS---------------------LTSLHYFTAYVNQITDITP--VANMT 221

Query: 230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
            L  L I +N +T    S L NL+++  L++ +N +       +  L  L +LN+  NQ 
Sbjct: 222 RLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 290 EGPIP 294
                
Sbjct: 278 SDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 38/207 (18%), Positives = 82/207 (39%), Gaps = 37/207 (17%)

Query: 89  LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE 148
              L      IN  FP     L E    +L+       + +  T     S+  + ++  +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKAS----VTDVVTQEELESITKLVVAGEK 55

Query: 149 FTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIF 207
              +    YL N + + ++GN I+     ++PL++                     L   
Sbjct: 56  VASIQGIEYLTNLEYLNLNGNQITD----ISPLSN---------------------LVKL 90

Query: 208 MTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267
             + + +NK        +  L  L+ L ++ +N++    S L NLT++ SL+L +N  + 
Sbjct: 91  TNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS 146

Query: 268 HIPTQLTSLKYLSVLNLSYNQFEGPIP 294
            +   L+++  L+ L ++ ++ +   P
Sbjct: 147 DLSP-LSNMTGLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 14/103 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKIP 56
           L +L++  N +++I      T +  LN  SN          L+    L +  N    +  
Sbjct: 245 LTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDM 304

Query: 57  RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI 99
                  NLT+L L+ N +       L +   ++  +  N  I
Sbjct: 305 EVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQVI 345

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (254), Expect = 2e-24
 Identities = 56/309 (18%), Positives = 105/309 (33%), Gaps = 34/309 (11%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
                ++++ L         +   +        K LD+  N  +            L  L
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNV--------KELDLSGNPLSQISAADLAPFTKLELL 63

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           NL+ N L       L +   L  L++ NN + +     L + P ++ L   +N       
Sbjct: 64  NLSSNVLYET--LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI----- 111

Query: 129 ENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH----GNNISVEVDYMTPLNS 182
             + +        + I L++N+ T  L          + +     N I   V++     S
Sbjct: 112 --SRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAAS 167

Query: 183 SNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
           S+  E + L    I D+K + +     T+DLSSNK    +         +  +++ +N L
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNT 301
              I  +LR    +E  DL  N        +    K   V  ++    +    +  +  T
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

Query: 302 FPNDSYVGN 310
            P   + G 
Sbjct: 285 VPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 4e-22
 Identities = 48/260 (18%), Positives = 97/260 (37%), Gaps = 47/260 (18%)

Query: 38  NLTH-KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN 96
           N    K+  +  ++    +      + N+  L+L+GN L       L     LE+LN+ +
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 97  NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV---L 153
           N + +     LE L  L+ L L +N           ++  PS+  +  ++N  + V    
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYV-------QELLVGPSIETLHAANNNISRVSCSR 118

Query: 154 LTG--YLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTID 211
             G   +      +  N I+                        +    E   +    +D
Sbjct: 119 GQGKKNIY-----LANNKIT-----------------------MLRDLDEGCRSRVQYLD 150

Query: 212 LSSNKFQG-GIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIP 270
           L  N+       E+    + L+ LN+ +N +  D+   +    ++++LDLSSN L   + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMG 207

Query: 271 TQLTSLKYLSVLNLSYNQFE 290
            +  S   ++ ++L  N+  
Sbjct: 208 PEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 28/157 (17%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L +L+L  NF+ +++        +L        K LD+  N     +  +F  +  +T +
Sbjct: 171 LEHLNLQYNFIYDVK--GQVVFAKL--------KTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN-DNFPNWLEILPELQVLILRSNRF-WGP 126
           +L  N+L   +  +L    +LE  ++  N  +     ++      +Q +  ++ +   G 
Sbjct: 220 SLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 127 IGENTTIVPFPS--------------LRIIDLSHNEF 149
             E  T+                    R+I L H+  
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 20/75 (26%), Positives = 31/75 (41%)

Query: 220 GIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279
            I E+    N  K   ++ ++L   + S  ++   V+ LDLS N L       L     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 280 SVLNLSYNQFEGPIP 294
            +LNLS N     + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (254), Expect = 8e-24
 Identities = 58/317 (18%), Positives = 105/317 (33%), Gaps = 36/317 (11%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
                ++++ L         +   +        K LD+  N  +            L  L
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNV--------KELDLSGNPLSQISAADLAPFTKLELL 63

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           NL+ N L       L +   L  L++ NN + +     L + P ++ L   +N       
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI----- 111

Query: 129 ENTTIVP---FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH----GNNISVEVDYMTPLN 181
              + V        + I L++N+ T  L          + +     N I   V++     
Sbjct: 112 ---SRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA 166

Query: 182 SSNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
           SS+  E + L    I D+K + +     T+DLSSNK    +         +  +++ +N 
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 241 LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFN 300
           L   I  +LR    +E  DL  N             K   V  ++    +    +  +  
Sbjct: 226 LV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 301 TFPNDSYVGNSGLCGFP 317
           T P   + G       P
Sbjct: 284 TVPTLGHYGAYCCEDLP 300

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.3 bits (211), Expect = 3e-18
 Identities = 35/324 (10%), Positives = 82/324 (25%), Gaps = 38/324 (11%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH------------KVLDMRMNNFNGKI 55
           +  L  +NN ++ +          +   +N +T             + LD+++N  +   
Sbjct: 101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 56  PRKFVKSC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
             +   S   L  LNL  N +   +   +     L+ L++ +N++        +    + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 115 VLILRSNRFWGPIGENTTI----VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM---HG 167
            + LR+N+          I        +L   DL  N F    L  +    + +      
Sbjct: 218 WISLRNNKL-------VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG----GIPE 223
               +                     + +       L      + +    QG     +  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 224 VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIP---TQLTSLKYLS 280
                   + ++         I           +L+     L   +         L    
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 281 VLNLSYNQFEGPIPRGSQFNTFPN 304
              +   + +      S       
Sbjct: 391 QQAVGQIELQHATEEQSPLQLLRA 414

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 20/75 (26%), Positives = 31/75 (41%)

Query: 220 GIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL 279
            I E+    N  K   ++ ++L   + S  ++   V+ LDLS N L       L     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 280 SVLNLSYNQFEGPIP 294
            +LNLS N     + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 10/140 (7%), Positives = 30/140 (21%), Gaps = 4/140 (2%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
                       ++       +  L    +           +   ++  +         +
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ----GSETERLECERENQARQREI 341

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           +    +    +    +       L      +++   N      EL   + ++        
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH 401

Query: 129 ENTTIVPFPSLRIIDLSHNE 148
                 P   LR I   + E
Sbjct: 402 ATEEQSPLQLLRAIVKRYEE 421

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (251), Expect = 2e-23
 Identities = 70/309 (22%), Positives = 119/309 (38%), Gaps = 37/309 (11%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L  L+LS+N +++I      T++ QL+F + +T                +       L  
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTD--------------LKPLANLTTLER 181

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L+++ N++       L    +LE L   NNQI+D  P  L IL  L  L L  N+    +
Sbjct: 182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ----L 233

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS--VEVDYMTPLNSSN 184
            +  T+    +L  +DL++N+ + +     L     + +  N IS    +  +T L +  
Sbjct: 234 KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 293

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD 244
             E+ +  I  I       L     + L  N      P  V  L  L+ L   +N ++  
Sbjct: 294 LNENQLEDISPISN-----LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD- 345

Query: 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPN 304
             SSL NLT +  L    N +    P  L +L  ++ L L+   +           + PN
Sbjct: 346 -VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 305 DSYVGNSGL 313
                   L
Sbjct: 403 TVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 92.7 bits (231), Expect = 8e-21
 Identities = 66/294 (22%), Positives = 114/294 (38%), Gaps = 33/294 (11%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
           D  +A      L    +T+      T++ Q+          L         K        
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVSQ--TDLDQV--------TTLQADRLGI--KSIDGVEYL 67

Query: 63  CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
            NLT +N + N+L       L N   L  + + NNQI D  P  L  L  L  L L +N+
Sbjct: 68  NNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS--VEVDYMTPL 180
               I +   +    +L  ++LS N  + +     L + + +  GN ++    +  +T L
Sbjct: 124 ----ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 179

Query: 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
              +   + +  I  +       LT   ++  ++N+     P  +G L  L  L+++ N 
Sbjct: 180 ERLDISSNKVSDISVLA-----KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232

Query: 241 LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
           L      +L +LT +  LDL++N +    P  L+ L  L+ L L  NQ     P
Sbjct: 233 LKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 81.5 bits (202), Expect = 4e-17
 Identities = 49/289 (16%), Positives = 97/289 (33%), Gaps = 31/289 (10%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L  +NN +++I   P   +T L          L +  N              NLT L
Sbjct: 201 LESLIATNNQISDIT--PLGILTNL--------DELSLNGNQLKDIGT--LASLTNLTDL 248

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           +L  N++       L     L  L +G NQI++  P  L  L  L  L L  N+    + 
Sbjct: 249 DLANNQISNL--APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ----LE 300

Query: 129 ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-MMHGNNISV--EVDYMTPLNSSNY 185
           + + I    +L  + L  N  + +     L   +    + N +S    +  +T +N  + 
Sbjct: 301 DISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSA 360

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245
             + I  +  +       LT    + L+   +          +++   +      L    
Sbjct: 361 GHNQISDLTPL-----ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--A 413

Query: 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
           P+++ +       D++ N+   +      +      +      F G + 
Sbjct: 414 PATISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 35/180 (19%), Positives = 55/180 (30%), Gaps = 36/180 (20%)

Query: 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-MMHGNNISVEV 174
            I +      PI +  T           L     T  +    LD           I    
Sbjct: 7   TITQDT----PINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK--- 59

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234
                            +I G++      L     I+ S+N+     P  +  L  L  +
Sbjct: 60  -----------------SIDGVE-----YLNNLTQINFSNNQLTDITP--LKNLTKLVDI 95

Query: 235 NISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
            +++N +    P  L NLT +  L L +N +    P  L +L  L+ L LS N       
Sbjct: 96  LMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 56/318 (17%), Positives = 117/318 (36%), Gaps = 43/318 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTS 67
           +  L +  N +  +      N+  L         VL +  N+ +  +PR  F  +  LT+
Sbjct: 95  IQKLYMGFNAIRYLPPHVFQNVPLL--------TVLVLERNDLS-SLPRGIFHNTPKLTT 145

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L+++ N LE     +      L+ L + +N++       L ++P L    +  N      
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL---- 198

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLN----- 181
              +T+    ++  +D SHN    V+          + +  NN++ +  ++         
Sbjct: 199 ---STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEV 253

Query: 182 --SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
             S N        ++ I       +     + +S+N+    +      +  LK L++SHN
Sbjct: 254 DLSYNE-------LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305

Query: 240 NLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQF 299
           +L   +  +      +E+L L  N +V  +   L++   L  L LS+N ++      + F
Sbjct: 306 HLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-CNSLRALF 360

Query: 300 NTFPNDSYVGNSGLCGFP 317
                 +       C   
Sbjct: 361 RNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 55/293 (18%), Positives = 105/293 (35%), Gaps = 30/293 (10%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVK 61
           D+ +     +   N+ +  +      +  Q+        ++L++       +I    F  
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAALLDSFRQV--------ELLNLNDLQIE-EIDTYAFAY 91

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
           +  +  L +  N +    P    N   L VL +  N ++          P+L  L + +N
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN 181
                I ++T      SL+ + LS N  T V L+     F A +  N +S  +     + 
Sbjct: 152 NLER-IEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-TLAIPIAVE 208

Query: 182 ----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
               S N        I  +   +   LT    + L  N        ++     L  +++S
Sbjct: 209 ELDASHNS-------INVVRGPVNVELT---ILKLQHNNLTD-TAWLLN-YPGLVEVDLS 256

Query: 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
           +N L   +      +  +E L +S+N LV  +      +  L VL+LS+N   
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 48/270 (17%), Positives = 88/270 (32%), Gaps = 35/270 (12%)

Query: 33  LNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVL 92
            N   +     + + M   +     + +   N   +    + +       L +   +E+L
Sbjct: 15  SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74

Query: 93  NVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
           N+ + QI +           +Q L +  N               P L ++ L  N+ +  
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLS-S 131

Query: 153 LLTGYLDNFKAM----MHGNNI-SVEVDYMTPLN-------SSNYYESIILTIKGIDIKM 200
           L  G   N   +    M  NN+  +E D             SSN        +  +D+ +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-------LTHVDLSL 184

Query: 201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDL 260
              L      ++S N         +     ++ L+ SHN++          LT    L L
Sbjct: 185 IPSLF---HANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTI---LKL 233

Query: 261 SSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
             N L       L +   L  ++LSYN+ E
Sbjct: 234 QHNNLT-DTAW-LLNYPGLVEVDLSYNELE 261

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.1 bits (159), Expect = 9e-12
 Identities = 31/240 (12%), Positives = 77/240 (32%), Gaps = 42/240 (17%)

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           I       C    ++++    +       +  ++ +++   N+ +       L+   +++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 115 VLILRSNRFWGPIGE--NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGN 168
           +L L   +    I E          +++ + +  N     L      N   +    +  N
Sbjct: 73  LLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
           ++S                        +   +        T+ +S+N  +    +     
Sbjct: 128 DLSS-----------------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164

Query: 229 NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
             L+ L +S N LT    S + +L      ++S N+L     + L     +  L+ S+N 
Sbjct: 165 TSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYNLL-----STLAIPIAVEELDASHNS 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 51/285 (17%), Positives = 93/285 (32%), Gaps = 75/285 (26%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
              L++  + LT +   P      +          L +  NN    +P        L +L
Sbjct: 42  NAVLNVGESGLTTL---PDCLPAHI--------TTLVIPDNNLT-SLPALP---PELRTL 86

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
            ++GN+L   LP        L + +     +         +   L  L +  N+      
Sbjct: 87  EVSGNQLTS-LPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQL----- 133

Query: 129 ENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-SSNY 185
              T +P   P L+ + +S N+                    ++      +  L   +N 
Sbjct: 134 ---TSLPVLPPGLQELSVSDNQLA------------------SLPALPSELCKLWAYNNQ 172

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245
             S+ +   G        L     + +S N+    +P +  +   L  L   +N LT  +
Sbjct: 173 LTSLPMLPSG--------LQ---ELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SL 216

Query: 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
           P+    L E   L +S N L   +P   + LK    L +S N+  
Sbjct: 217 PALPSGLKE---LIVSGNRL-TSLPVLPSELKE---LMVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.5 bits (227), Expect = 4e-20
 Identities = 58/288 (20%), Positives = 96/288 (33%), Gaps = 73/288 (25%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
              L  L++S N LT++    P     L     L+       + +              L
Sbjct: 80  PPELRTLEVSGNQLTSL----PVLPPGL---LELSI--FSNPLTHLPALPS-------GL 123

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             L + GN+L   LP        L+ L+V +NQ+  + P       EL  L   +N+   
Sbjct: 124 CKLWIFGNQLTS-LPVLPPG---LQELSVSDNQLA-SLPAL---PSELCKLWAYNNQL-- 173

Query: 126 PIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-S 182
                 T +P     L+ + +S N+                    ++      +  L   
Sbjct: 174 ------TSLPMLPSGLQELSVSDNQLA------------------SLPTLPSELYKLWAY 209

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
           +N   S+     G        L     + +S N+    +P +  +   LK L +S N LT
Sbjct: 210 NNRLTSLPALPSG--------LK---ELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT 254

Query: 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
             +P     L    SL +  N L   +P  L  L   + +NL  N   
Sbjct: 255 -SLPMLPSGLL---SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.4 bits (193), Expect = 8e-16
 Identities = 57/311 (18%), Positives = 103/311 (33%), Gaps = 68/311 (21%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH--------KVLDMRMNNFNGKIPRKF 59
           L         L  +    P+ + +L    N LT         + L +  N     +P   
Sbjct: 106 LSIFSNPLTHLPAL----PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALP 160

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
                L  L    N+L   LP        L+ L+V +NQ+    P    +  EL  L   
Sbjct: 161 ---SELCKLWAYNNQLTS-LPMLPSG---LQELSVSDNQLAS-LP---TLPSELYKLWAY 209

Query: 120 SNRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178
           +NR        T++   P  L+ + +S N  T                  ++ V    + 
Sbjct: 210 NNRL-------TSLPALPSGLKELIVSGNRLT------------------SLPVLPSELK 244

Query: 179 PLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
            L  S N   S+ +   G        L    ++ +  N+    +PE +  L+    +N+ 
Sbjct: 245 ELMVSGNRLTSLPMLPSG--------LL---SLSVYRNQLTR-LPESLIHLSSETTVNLE 292

Query: 238 HNNLTGDIPSSLRNLTEVESLD---LSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
            N L+     +LR +T         +  +M     P +  +L   +   L   +   P P
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

Query: 295 RGSQFNTFPND 305
              +++ F  +
Sbjct: 353 AD-RWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.4 bits (180), Expect = 3e-14
 Identities = 45/237 (18%), Positives = 76/237 (32%), Gaps = 53/237 (22%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
               LN+  + L   LP  L    H+  L + +N +    P    + PEL+ L +  N+ 
Sbjct: 41  GNAVLNVGESGLTT-LPDCLPA--HITTLVIPDNNLTS-LP---ALPPELRTLEVSGNQL 93

Query: 124 WGPIGENTTIVP-----FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN----ISVEV 174
                   T +P        L I            L         +    N    + V  
Sbjct: 94  --------TSLPVLPPGLLELSIFSNPLTH-----LPALPSGLCKLWIFGNQLTSLPVLP 140

Query: 175 DYMTPLN-SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233
             +  L+ S N   S+              L     +   +N+    +P +      L+ 
Sbjct: 141 PGLQELSVSDNQLASLPALPSE--------LC---KLWAYNNQLT-SLPMLPSG---LQE 185

Query: 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
           L++S N L   +P+    L     L   +N L   +P   + LK    L +S N+  
Sbjct: 186 LSVSDNQLA-SLPTLPSELY---KLWAYNNRLT-SLPALPSGLK---ELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 52/231 (22%)

Query: 73  NRLEGPLPPSLVNCH--HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGEN 130
           +R    +   +  C      VLNVG + +    P+   +   +  L++  N         
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLTT-LPD--CLPAHITTLVIPDNNL------- 73

Query: 131 TTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL----NSSN 184
            T +P   P LR +++S N+ T                  ++ V    +  L    N   
Sbjct: 74  -TSLPALPPELRTLEVSGNQLT------------------SLPVLPPGLLELSIFSNPLT 114

Query: 185 YYESIILTIKGIDIKMERILTIFMTI------DLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           +  ++   +  + I   ++ ++ +         +S N+    +P +  +   L  L   +
Sbjct: 115 HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA-SLPALPSE---LCKLWAYN 170

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           N LT  +P     L E   L +S N L   +PT  + L  L   N      
Sbjct: 171 NQLT-SLPMLPSGLQE---LSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 34/160 (21%), Positives = 53/160 (33%), Gaps = 35/160 (21%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH--------KVLDMRMNNFNGKI 55
             + L  L   NN LT++    P+ + +L+   N L            L    N     +
Sbjct: 159 LPSELCKLWAYNNQLTSLPML-PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SL 216

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
           P        L  L ++GNRL   LP        L+ L V  N++    P        L  
Sbjct: 217 PALP---SGLKELIVSGNRLTS-LPVLPSE---LKELMVSGNRLTS-LPML---PSGLLS 265

Query: 116 LILRSNRFWGPIGENTTIVP-----FPSLRIIDLSHNEFT 150
           L +  N+         T +P       S   ++L  N  +
Sbjct: 266 LSVYRNQL--------TRLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 7e-10
 Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 28/156 (17%)

Query: 6   IATLYYLDLSNNFLTNIEYFP--PTNMTQLNFDSN-LTH--------KVLDMRMNNFNGK 54
            + L  L +S+N L ++   P  P+ + +L   +N LT         K L +   N    
Sbjct: 180 PSGLQELSVSDNQLASL---PTLPSELYKLWAYNNRLTSLPALPSGLKELIVS-GNRLTS 235

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           +P        L  L ++GNRL   LP        L  L+V  NQ+    P  L  L    
Sbjct: 236 LPVLP---SELKELMVSGNRLTS-LPMLPSG---LLSLSVYRNQLTR-LPESLIHLSSET 287

Query: 115 VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150
            + L  N       +         +           
Sbjct: 288 TVNLEGNPLSERTLQALR-----EITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 15/103 (14%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            +++  +     +P+ +     +  L I  NNLT  +P+    L    +L++S N L   
Sbjct: 44  VLNVGESGLTT-LPDCLPAH--ITTLVIPDNNLT-SLPALPPELR---TLEVSGNQLT-S 95

Query: 269 IPTQLTSLKYLSVLNLSYNQFEGPIP-------RGSQFNTFPN 304
           +P     L  LS+ +                   G+Q  + P 
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 138

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 23/159 (14%), Positives = 39/159 (24%), Gaps = 38/159 (23%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
            + L  L +S N LT++    P   +                                 L
Sbjct: 240 PSELKELMVSGNRLTSL----PMLPS--------------------------------GL 263

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF-W 124
            SL++  N+L   LP SL++      +N+  N +++     L  +           RF  
Sbjct: 264 LSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
                              L                F  
Sbjct: 323 AGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQ 361

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.9 bits (244), Expect = 3e-22
 Identities = 45/293 (15%), Positives = 94/293 (32%), Gaps = 50/293 (17%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  +    L +  +  ++ F         ++    H  L++    F      K     +
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFS--------YNFGWQH--LELVNCKFGQFPTLKLK---S 326

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNR 122
           L  L    N+       S V+   LE L++  N ++              L+ L L  N 
Sbjct: 327 LKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNI-SVEVDYM 177
               I  ++  +    L  +D  H+    +       + + +    +   +         
Sbjct: 385 V---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI-PEVVGKLNLLKGLNI 236
             L+S                     L     + ++ N FQ    P++  +L  L  L++
Sbjct: 442 NGLSS---------------------LE---VLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           S   L    P++  +L+ ++ L+++SN L          L  L  + L  N +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.6 bits (220), Expect = 3e-19
 Identities = 61/304 (20%), Positives = 103/304 (33%), Gaps = 35/304 (11%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSC 63
           G+A L    L      N       + + L    NLT +   +   + +   I   F    
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           N++S +L    +E             + L + N +    FP     L  L+ L   SN+ 
Sbjct: 283 NVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFG-QFPTL--KLKSLKRLTFTSNK- 336

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN-S 182
               G   + V  PSL  +DLS N  +            +       S++      L+ S
Sbjct: 337 ---GGNAFSEVDLPSLEFLDLSRNGLSFK-------GCCSQSDFGTTSLKY-----LDLS 381

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNL 241
            N   ++     G        L     +D   +  +      V   L  L  L+ISH + 
Sbjct: 382 FNGVITMSSNFLG--------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPRGSQFN 300
                     L+ +E L ++ N    +      T L+ L+ L+LS  Q E  +   + FN
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTA-FN 491

Query: 301 TFPN 304
           +  +
Sbjct: 492 SLSS 495

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 88.2 bits (219), Expect = 4e-19
 Identities = 54/324 (16%), Positives = 102/324 (31%), Gaps = 40/324 (12%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
            +   LDLS N L ++  +   +  +L        +VLD+            +    +L+
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           +L L GN ++     +      L+ L      +       +  L  L+ L +  N     
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QS 138

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
                      +L  +DLS N+   +    Y  + + +     +++ +D      S N  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSI----YCTDLRVLHQMPLLNLSLDL-----SLNPM 189

Query: 187 ESIILTI-KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK-------LNLLKGLNISH 238
             I     K I +           + L +N     + +   +         L+ G   + 
Sbjct: 190 NFIQPGAFKEIRLH---------KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNML---VGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295
            NL     S+L  L  +   +     L   +  I      L  +S  +L     E  +  
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD 299

Query: 296 GSQFNTFPNDSYVGNSGLCGFPLL 319
            S +N       + N     FP L
Sbjct: 300 FS-YNFGWQHLELVNCKFGQFPTL 322

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 47/290 (16%), Positives = 88/290 (30%), Gaps = 46/290 (15%)

Query: 13  DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72
                    I    P N+       +  +  LD+  N         F     L  L+L+ 
Sbjct: 13  QCMELNFYKI----PDNLP-----FSTKN--LDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 73  NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTT 132
             ++     +  +  HL  L +  N I          L  LQ L+           EN  
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL--ENFP 119

Query: 133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSSNYYES 188
           I    +L+ ++++HN      L  Y  N   +    +  N I                  
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ----------------- 162

Query: 189 IILTIKGIDIKMERILTI-FMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPS 247
              +I   D+++   + +  +++DLS N     I     K   L  L + +N  + ++  
Sbjct: 163 ---SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 248 -SLRNLTEVESLDLSSNMLVGHI------PTQLTSLKYLSVLNLSYNQFE 290
             ++ L  +E   L                + L  L  L++        +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 7e-17
 Identities = 56/307 (18%), Positives = 96/307 (31%), Gaps = 45/307 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFN-GKIPRKFVKSCNLTS 67
           L  L      L ++E FP  ++  L        K L++  N     K+P  F    NL  
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTL--------KELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEV----LNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           L+L+ N+++      L   H + +    L++  N +N            L  L LR+N F
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNN-F 211

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
                  T I     L +  L   EF                 GN    +   +  L + 
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRN--------------EGNLEKFDKSALEGLCNL 257

Query: 184 NYYESIILTIKGIDIKMERILTIF------MTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
              E     +  +D  ++ I+ +F       +  L S   +  + +        + L + 
Sbjct: 258 TIEE---FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG-WQHLELV 312

Query: 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS 297
           +          L++L     L  +SN            L  L  L+LS N          
Sbjct: 313 NCKFGQFPTLKLKSLKR---LTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 298 QFNTFPN 304
                 +
Sbjct: 368 SDFGTTS 374

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
           LG+  L +LD  ++ L  +  F    ++  L          LD+   +        F   
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--------IYLDISHTHTRVAFNGIFNGL 444

Query: 63  CNLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
            +L  L + GN  +    P       +L  L++   Q+    P     L  LQVL + SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEF 149
           +       +       SL+ I L  N +
Sbjct: 505 QLKSV--PDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
           + + +L +LDLS N L+        +       ++L +  LD+  N     +   F+   
Sbjct: 344 VDLPSLEFLDLSRNGLSFKG-CCSQSDFGT---TSLKY--LDLSFNGVI-TMSSNFLGLE 396

Query: 64  NLTSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
            L  L+   + L+     S  ++  +L  L++ +      F      L  L+VL +  N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
           F      +       +L  +DLS  +   +
Sbjct: 457 FQENFLPD-IFTELRNLTFLDLSQCQLEQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 51/306 (16%), Positives = 103/306 (33%), Gaps = 19/306 (6%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKS 62
            +++L YL+L  N    +       N+T L        + L +       +I R  F   
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNL--------QTLRIGNVETFSEIRRIDFAGL 147

Query: 63  CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
            +L  L +    L      SL +   +  L +  ++       + +IL  ++ L LR   
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 123 FWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN 181
                            ++ +    +  T       L   + ++  + +  +   +  L 
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
             N  ES +++    ++     +TI   + +        +  V   L  +K + + ++ +
Sbjct: 268 DFNPSESDVVS----ELGKVETVTI-RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ---LTSLKYLSVLNLSYNQFEGPIPRGSQ 298
                S  ++L  +E LDLS N++V           +   L  L LS N        G  
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 299 FNTFPN 304
             T  N
Sbjct: 383 LLTLKN 388

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.1 bits (242), Expect = 5e-22
 Identities = 43/299 (14%), Positives = 104/299 (34%), Gaps = 15/299 (5%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KIPRKFVKSCNLTS 67
           L +LDLS+N L+++       ++ L        K L++  N +    +   F    NL +
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSL--------KYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 68  LNL-NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           L + N                 L  L +    + +     L+ + ++  L L  +     
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES--A 185

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
                      S+R ++L             L   +       ++     +T  + +   
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246
           + +   ++  +++ +   T+    D + ++          +   ++ L+I    L  D+ 
Sbjct: 245 KLLRYILELSEVEFDD-CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF-EGPIPRGSQFNTFPN 304
           +    L +V+ + + ++ +     +    LK L  L+LS N   E  +   +    +P+
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 3e-19
 Identities = 44/289 (15%), Positives = 94/289 (32%), Gaps = 33/289 (11%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
           L ++ + + D + N L +        +++L     +T + L +        +   +    
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF---PNWLEILPELQVLILRS 120
            +  + +  +++         +   LE L++  N + + +          P LQ L+L  
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL 180
           N           ++   +L  +D+S N F                    +     +   +
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFH------------------PMPDSCQWPEKM 412

Query: 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
                   + L+  GI +    I      +D+S+N     +      L  L+ L IS N 
Sbjct: 413 ------RFLNLSSTGIRVVKTCIPQTLEVLDVSNNN----LDSFSLFLPRLQELYISRNK 462

Query: 241 LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           L   +P +      +  + +S N L          L  L  + L  N +
Sbjct: 463 LK-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 42/307 (13%), Positives = 103/307 (33%), Gaps = 34/307 (11%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           A +  LDLS N +T I +        L        +VL ++ +  N      F    +L 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANL--------QVLILKSSRINTIEGDAFYSLGSLE 77

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWG 125
            L+L+ N L             L+ LN+  N        +    L  LQ L + +   + 
Sbjct: 78  HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS----VEVDYM 177
            I          SL  +++          +  L + + +    +H +  +    +  D +
Sbjct: 138 EI-RRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-------IPEVVGKLNL 230
           + +      ++ +   +   + ++ + +    +    +            +   + +L+ 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 231 LKGLNISHNNLTGDIPSSLRNLTE--------VESLDLSSNMLVGHIPTQLTSLKYLSVL 282
           ++  + + N L    PS    ++E        +  L +    L   + T  + L+ +  +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 283 NLSYNQF 289
            +  ++ 
Sbjct: 316 TVENSKV 322

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 7e-16
 Identities = 38/312 (12%), Positives = 90/312 (28%), Gaps = 43/312 (13%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
            D  +   T+I    P+ +T     + +    LD+  N              NL  L L 
Sbjct: 10  CDGRSRSFTSI----PSGLT-----AAMKS--LDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
            +R+      +  +   LE L++ +N ++    +W   L  L+ L L  N +   +G  +
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTS 117

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL 191
                 +L+ + + + E    +         ++               L           
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE-------------LEIKALS----- 159

Query: 192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN 251
            ++    +  + +     + L  ++    +      L+ ++ L +   NL     S L  
Sbjct: 160 -LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 252 LTEVESLDLSSNMLVG----------HIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNT 301
                 +   +                +   +  L  +   + + N         S+ + 
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL--GDFNPSESDV 276

Query: 302 FPNDSYVGNSGL 313
                 V    +
Sbjct: 277 VSELGKVETVTI 288

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 47/298 (15%), Positives = 99/298 (33%), Gaps = 59/298 (19%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG--KIPRKFVKS 62
            ++++ YL+L +  L   ++ P       +    L  +   +   +FN   K+ R  ++ 
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 63  CNLTSLNLNGNRL--------EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
             +   +   N L        +       V    +  L++    +  +      +L +++
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 115 VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV 174
            + + +++ +      +      SL  +DLS N      L                S   
Sbjct: 314 RITVENSKVFLV--PCSFSQHLKSLEFLDLSENLMVEEYLKN--------------SACK 357

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ--GGIPEVVGKLNLLK 232
                L                            T+ LS N  +      E++  L  L 
Sbjct: 358 GAWPSLQ---------------------------TLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 233 GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
            L+IS N     +P S +   ++  L+LSS  +   + T +   + L VL++S N  +
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 30/245 (12%), Positives = 78/245 (31%), Gaps = 53/245 (21%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           +  + + N+ +  +      ++  L        + LD+  N    +  +         SL
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSL--------EFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 69  ---NLNGNRLE--GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
               L+ N L         L+   +L  L++  N  +   P+  +   +++ L L S   
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

Query: 124 WGPIGENTTIVP---FPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTP 179
                    +V      +L ++D+S+N       + +L   + + +  N +         
Sbjct: 423 --------RVVKTCIPQTLEVLDVSNNNLDS--FSLFLPRLQELYISRNKLK-------- 464

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
                             +    +  + + + +S N+ +     +  +L  L+ + +  N
Sbjct: 465 -----------------TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 240 NLTGD 244
                
Sbjct: 508 PWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 11/105 (10%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLN--------FDSNLTH-KVLDMRMNNFNGKI 55
               + +L+LS+  +  ++   P  +  L+        F   L   + L +  N      
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLP 467

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
                    L  + ++ N+L+            L+ + +  N  +
Sbjct: 468 DASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.5 bits (240), Expect = 9e-22
 Identities = 54/292 (18%), Positives = 102/292 (34%), Gaps = 28/292 (9%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKS 62
           D+ +     +   N+ +  +      +  Q+        ++L++            F  +
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAALLDSFRQV--------ELLNLNDLQIEEIDTYAFAYA 98

Query: 63  CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
             +  L +  N +    P    N   L VL +  N ++          P+L  L + +N 
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN- 181
               I ++T      SL+ + LS N  T V L+     F A +  N +S  +     +  
Sbjct: 159 LER-IEDDT-FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-TLAIPIAVEE 215

Query: 182 ---SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
              S N        I  +   +   LT    + L  N         +     L  +++S+
Sbjct: 216 LDASHNS-------INVVRGPVNVELT---ILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
           N L   +      +  +E L +S+N LV  +      +  L VL+LS+N   
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 5e-21
 Identities = 57/323 (17%), Positives = 118/323 (36%), Gaps = 43/323 (13%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSC 63
              T+  L +  N +  +      N+  L         VL +  N+ +  +PR  F  + 
Sbjct: 97  YAHTIQKLYMGFNAIRYLPPHVFQNVPLL--------TVLVLERNDLS-SLPRGIFHNTP 147

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
            LT+L+++ N LE     +      L+ L + +N++       L ++P L    +  N  
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL 204

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLN- 181
                  +T+    ++  +D SHN    V+          + +  NN++ +  ++     
Sbjct: 205 -------STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLT-DTAWLLNYPG 255

Query: 182 ------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235
                 S N        ++ I       +     + +S+N+    +      +  LK L+
Sbjct: 256 LVEVDLSYNE-------LEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 307

Query: 236 ISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR 295
           +SHN+L   +  +      +E+L L  N +V  +   L++   L  L LS+N ++     
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD-CNSL 362

Query: 296 GSQFNTFPNDSYVGNSGLCGFPL 318
            + F      +       C    
Sbjct: 363 RALFRNVARPAVDDADQHCKIDY 385

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.4 bits (180), Expect = 3e-14
 Identities = 50/289 (17%), Positives = 90/289 (31%), Gaps = 38/289 (13%)

Query: 14  LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN 73
              N        P       N   +     + + M   +     + +   N   +    +
Sbjct: 5   QRYNVKPRQ---PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61

Query: 74  RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI 133
            +       L +   +E+LN+ + QI +           +Q L +  N            
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVF 119

Query: 134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNI-SVEVDYMTPLN------- 181
              P L ++ L  N+ +  L  G   N   +    M  NN+  +E D             
Sbjct: 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
           SSN        +  +D+ +   L      ++S N         +     ++ L+ SHN++
Sbjct: 179 SSN-------RLTHVDLSLIPSLF---HANVSYNLLS-----TLAIPIAVEELDASHNSI 223

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
                     LT    L L  N L       L +   L  ++LSYN+ E
Sbjct: 224 NVVRGPVNVELTI---LKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.2 bits (237), Expect = 2e-21
 Identities = 58/307 (18%), Positives = 101/307 (32%), Gaps = 26/307 (8%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
                LDL  N +  +      +   L        + L++  N     +    F    NL
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHL--------EELELNENIV-SAVEPGAFNNLFNL 82

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
            +L L  NRL+           +L  L++  N+I        + L  L+ L +  N    
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-V 141

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA----MMHGNNISVEVDYMTPLN 181
            I          SL  + L     T  + T  L +        +   NI+  +   +   
Sbjct: 142 YISHR-AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKR 198

Query: 182 SSNYYESIILTIKGIDIKMERILTIF--MTIDLSSNKFQGGIPEVV-GKLNLLKGLNISH 238
                   I     +D      L      ++ ++       +P +    L  L+ LN+S+
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPRGS 297
           N ++    S L  L  ++ + L    L   +       L YL VLN+S NQ    +    
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLTT-LEESV 315

Query: 298 QFNTFPN 304
            F++  N
Sbjct: 316 -FHSVGN 321

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.9 bits (226), Expect = 5e-20
 Identities = 55/293 (18%), Positives = 92/293 (31%), Gaps = 46/293 (15%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  L  L L +N L  I     T ++ L          LD+  N     +   F    N
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNL--------TKLDISENKIVILLDYMFQDLYN 129

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
           L SL +  N L      +    + LE L +    +       L  L  L VL LR     
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI- 188

Query: 125 GPIGENTTIVP-----FPSLRIIDLSHNEFTGVLLTGYLDNFKA---MMHGNNISVEVDY 176
                   I          L+++++SH  +   +    L         +   N++  V Y
Sbjct: 189 ------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241

Query: 177 MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236
           +   +         L                  ++LS N        ++ +L  L+ + +
Sbjct: 242 LAVRHLVY------LR----------------FLNLSYNPISTIEGSMLHELLRLQEIQL 279

Query: 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
               L    P + R L  +  L++S N L     +   S+  L  L L  N  
Sbjct: 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 51/249 (20%), Positives = 83/249 (33%), Gaps = 25/249 (10%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
                 L+L  NR++        +  HLE L +  N ++   P     L  L+ L LRSN
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA----MMHGNNIS-VEVDY 176
           R    +          +L  +D+S N+   +LL     +        +  N++  +    
Sbjct: 91  RL--KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 177 MTPLN-------SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229
            + LN                  +  I  +    L   + + L              +L 
Sbjct: 148 FSGLNSLEQLTLEKC-------NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQ 288
            LK L ISH      +  +      + SL ++   L   +P   +  L YL  LNLSYN 
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP 259

Query: 289 FEGPIPRGS 297
               I    
Sbjct: 260 IST-IEGSM 267

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 61/289 (21%), Positives = 95/289 (32%), Gaps = 69/289 (23%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
                LDL NN +T I+     N+  L          L +  N  +   P  F     L 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKISKISPGAFAPLVKLE 103

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L L+ N+L+  LP  +     L+ L V  N+I     +    L ++ V+ L +N     
Sbjct: 104 RLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGV---LLTG--YLDNFKAMMHGNNISVEVDYMTPLN 181
             EN        L  I ++    T +   L      L      + GN I+          
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH-----LDGNKITK--------- 206

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
                                         + +   +G        LN L  L +S N++
Sbjct: 207 ------------------------------VDAASLKG--------LNNLAKLGLSFNSI 228

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
           +     SL N   +  L L++N LV  +P  L   KY+ V+ L  N   
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.7 bits (197), Expect = 9e-17
 Identities = 47/296 (15%), Positives = 97/296 (32%), Gaps = 61/296 (20%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L+ L L NN ++ I       + +L        + L +  N    ++P K  K   L  L
Sbjct: 78  LHTLILINNKISKISPGAFAPLVKL--------ERLYLSKNQLK-ELPEKMPK--TLQEL 126

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSNRFWGP 126
            ++ N +           + + V+ +G N +  +       + + +L  + +        
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI--- 183

Query: 127 IGENTTIVP---FPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTP 179
                T +P    PSL  + L  N+ T  +    L     +    +  N+IS  VD  + 
Sbjct: 184 -----TTIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSL 236

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
            N+ +      L                  + L++NK    +P  +     ++ + + +N
Sbjct: 237 ANTPH------LR----------------ELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 240 NLTG------DIPSSLRNLTEVESLDLSSNML-VGHIPTQL-TSLKYLSVLNLSYN 287
           N++         P           + L SN +    I       +   + + L   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 15/147 (10%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
            +L  L L  N +T ++      +  L          L +  N+ +         + +L 
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNL--------AKLGLSFNSISAVDNGSLANTPHLR 243

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI----NDNF--PNWLEILPELQVLILRS 120
            L+LN N+L   +P  L +  +++V+ + NN I    +++F  P +         + L S
Sbjct: 244 ELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHN 147
           N       + +T         + L + 
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 17/122 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L LS N ++ ++     N   L        + L +  N    K+P        +  +
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHL--------RELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 69  NLNGNRLEG------PLPPSLVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRS 120
            L+ N +          P           +++ +N +      P+    +     + L +
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 121 NR 122
            +
Sbjct: 329 YK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            +DL +NK           L  L  L + +N ++   P +   L ++E L LS N L   
Sbjct: 56  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114

Query: 269 IPTQLTSLKYLSVLNLSYNQFEGPIPRGS 297
           +P ++   K L  L +  N+    + +  
Sbjct: 115 LPEKM--PKTLQELRVHENEITK-VRKSV 140

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 14/99 (14%)

Query: 209 TIDLSSNKFQ---GGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML 265
            +  S    +     +P           L++ +N +T       +NL  + +L L +N +
Sbjct: 35  VVQCSDLGLEKVPKDLPP------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 266 VGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPN 304
               P     L  L  L LS NQ +  +P          
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKE-LPEK----MPKT 122

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 24/111 (21%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT---GDIPSSLR--------------- 250
           T+ L +NK     P     L  L+ L +S N L      +P +L+               
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 139

Query: 251 ---NLTEVESLDLSSNML-VGHIPTQ-LTSLKYLSVLNLSYNQFEGPIPRG 296
               L ++  ++L +N L    I       +K LS + ++       IP+G
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 2e-19
 Identities = 44/295 (14%), Positives = 90/295 (30%), Gaps = 80/295 (27%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
              L+L +  L       P    +L   S+L H  + +       ++P    +   L +L
Sbjct: 83  RVALELRSVPLPQF----PDQAFRL---SHLQH--MTIDAAGLM-ELPDTMQQFAGLETL 132

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNV-GNNQI--------NDNFPNWLEILPELQVLILR 119
            L  N L   LP S+ + + L  L++    ++        + +     + L  LQ L L 
Sbjct: 133 TLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 120 SNRFWGPIGENTTIVP-----FPSLRIIDLSHNEFTGVLLT-GYLDNFKAMMHGNNISVE 173
                         +P       +L+ + + ++  + +     +L               
Sbjct: 192 WTGI--------RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK------------- 230

Query: 174 VDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233
                                         L      DL         P + G    LK 
Sbjct: 231 ------------------------------LEEL---DLRGCTALRNYPPIFGGRAPLKR 257

Query: 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
           L +   +    +P  +  LT++E LDL   + +  +P+ +  L    ++ +  + 
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 6e-18
 Identities = 34/262 (12%), Positives = 72/262 (27%), Gaps = 38/262 (14%)

Query: 38  NLTHKVLDMRMNNFNGKIPR--KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVG 95
           N  +  ++ R            +        +L L    L    P       HL+ + + 
Sbjct: 54  NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTID 112

Query: 96  NNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVP-----FPSLRIIDLSHNEFT 150
              +    P+ ++    L+ L L  N            +P        LR + +      
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPL--------RALPASIASLNRLRELSIRACPE- 162

Query: 151 GVLLTGYLDNFKAMMHGNNISVEVDYMTPLN----SSNYYESIILTIKGIDIKMERILTI 206
                  L      +   + S E   +  L           S+  +I          L  
Sbjct: 163 -------LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN--------LQN 207

Query: 207 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLV 266
             ++ + ++     +   +  L  L+ L++       + P        ++ L L     +
Sbjct: 208 LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 267 GHIPTQLTSLKYLSVLNLSYNQ 288
             +P  +  L  L  L+L    
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 65/238 (27%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL--RSN 121
              +L   G+    P    L         +        N  +            +  R+ 
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADR-------NRWHSAWRQANSNNPQIETRTG 65

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN 181
           R      +       P    ++L                            +   ++ L 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP------------------QFPDQAFRLSHL- 106

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
                                       + + +      +P+ + +   L+ L ++ N L
Sbjct: 107 --------------------------QHMTIDAAGLME-LPDTMQQFAGLETLTLARNPL 139

Query: 242 TGDIPSSLRNLTEVESLDLSSN---------MLVGHIPTQLTSLKYLSVLNLSYNQFE 290
              +P+S+ +L  +  L + +          +       +   L  L  L L +    
Sbjct: 140 R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 57/286 (19%), Positives = 87/286 (30%), Gaps = 64/286 (22%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
                LDL NN ++ +       +  L          L +  N  + KI  K F     L
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHL--------YALVLVNNKIS-KIHEKAFSPLRKL 104

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             L ++ N L   +PP+L     L  L + +N+I          L  +  + +  N    
Sbjct: 105 QKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP--- 158

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
                        L         F G+ L  YL      +    ++  +    P      
Sbjct: 159 -------------LENSGFEPGAFDGLKLN-YLR-----ISEAKLT-GIPKDLPET---- 194

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTGD 244
                L                  + L  NK Q  I      + + L  L + HN +   
Sbjct: 195 -----LN----------------ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
              SL  L  +  L L +N L   +P  L  LK L V+ L  N   
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 30/160 (18%), Positives = 51/160 (31%), Gaps = 22/160 (13%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN------------LTH-KVLDMRMNNFNGK 54
            L YL +S   LT I    P  + +L+ D N             +    L +  N     
Sbjct: 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-M 231

Query: 55  IPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI----NDNFP--NWL 107
           I          L  L+L+ N+L   +P  L +   L+V+ +  N I     ++F    + 
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

Query: 108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147
                   + L +N       +  T         I   + 
Sbjct: 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 49/237 (20%), Positives = 88/237 (37%), Gaps = 38/237 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN------------LTH-KVLDMRMNNF-NGK 54
           L  L +S N L  I    P+++ +L    N            L +   ++M  N   N  
Sbjct: 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
                     L  L ++  +L G +P  L     L  L++ +N+I       L    +L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 115 VLILRSNRFWGPIG--ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGN 168
            L L  N+    I   EN ++   P+LR + L +N+ + V     L + K +    +H N
Sbjct: 221 RLGLGHNQ----IRMIENGSLSFLPTLRELHLDNNKLSRV--PAGLPDLKLLQVVYLHTN 274

Query: 169 NIS-VEVDYMTPLNSSNYYESI-ILTIKGIDIKMERI-------LTIFMTIDLSSNK 216
           NI+ V V+   P+           +++    +    +       +T  + I   + K
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.6 bits (204), Expect = 7e-18
 Identities = 50/290 (17%), Positives = 78/290 (26%), Gaps = 55/290 (18%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC--NLTSLN 69
           L L    +             L        + L +      G  P   +++   +L  LN
Sbjct: 68  LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN 127

Query: 70  LNGNRLEG--PLPPSLVNC--HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
           L              L       L+VL++      +     + + P L  L L  N   G
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 126 PIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
             G  + + P  FP+L+++ L +                                     
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGME--------------------------------- 214

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLT 242
                   T  G+   +         +DLS N  +           + L  LN+S   L 
Sbjct: 215 --------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292
                    L     LDLS N L    P     L  +  L+L  N F   
Sbjct: 267 QVPKGLPAKL---SVLDLSYNRL-DRNP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 32/147 (21%), Positives = 46/147 (31%), Gaps = 15/147 (10%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFN---GKIPRKFVKSCNL 65
           L  LDLS+N           +         L  +VL +R        G           L
Sbjct: 175 LSTLDLSDNPELGERGLI--SALCPLKFPTL--QVLALRNAGMETPSGVCSALAAARVQL 230

Query: 66  TSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
             L+L+ N L      PS      L  LN+    +         +  +L VL L  NR  
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG---LPAKLSVLDLSYNR-- 285

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTG 151
             +  N +    P +  + L  N F  
Sbjct: 286 --LDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 29/151 (19%), Positives = 47/151 (31%), Gaps = 12/151 (7%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L+L N      + +      +L        KVL +   +       +      L++L
Sbjct: 123 LNILNLRNVSWATRDAWLA----ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 69  NLNGNRLEGPLPPSLVNC----HHLEVLNVGNNQIN---DNFPNWLEILPELQVLILRSN 121
           +L+ N   G        C      L+VL + N  +               +LQ L L  N
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
                 G  +   P   L  ++LS      V
Sbjct: 239 SLRDAAGAPSCDWP-SQLNSLNLSFTGLKQV 268

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 26/177 (14%), Positives = 54/177 (30%), Gaps = 17/177 (9%)

Query: 136 FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVE--VDYMTPLNSSN----YYESI 189
              L+ +D   +      +   L   +  +    I        +  L  S       E++
Sbjct: 46  EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105

Query: 190 ILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL----LKGLNISHNNLTGDI 245
            +T       +E        ++L +  +      +          LK L+I+  +     
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 246 PSSLRNLTEVESLDLSSNMLVGHI-------PTQLTSLKYLSVLNLSYNQFEGPIPR 295
              +R    + +LDLS N  +G         P +  +L+ L++ N       G    
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 60/318 (18%), Positives = 121/318 (38%), Gaps = 60/318 (18%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-----------LTH-KVLDMRM 48
           + D      + L+L+N  L+++   PP ++  L    N           L    V +  +
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPP-HLESLVASCNSLTELPELPQSLKSLLVDNNNL 123

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLE 108
              +   P        L  L ++ N+LE    P L N   L++++V NN +    P+   
Sbjct: 124 KALSDLPP-------LLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKK-LPDL-- 171

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHG 167
             P L+ +   +N+    + E   +   P L  I   +N      L     + +++    
Sbjct: 172 -PPSLEFIAAGNNQ----LEELPELQNLPFLTAIYADNNSLKK--LPDLPLSLESIVAGN 224

Query: 168 NNISV--EVDYMTPLN----SSNYYESI---ILTIKGIDIKMERILTIFMTI------DL 212
           N +    E+  +  L      +N  +++     +++ ++++   +  +          D+
Sbjct: 225 NILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284

Query: 213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ 272
           S N F  G+ E+   L     LN S N +   +     +L E   L++S+N L+  +P  
Sbjct: 285 SENIFS-GLSELPPNL---YYLNASSNEIR-SLCDLPPSLEE---LNVSNNKLI-ELPAL 335

Query: 273 LTSLKYLSVLNLSYNQFE 290
              L+    L  S+N   
Sbjct: 336 PPRLE---RLIASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 59/282 (20%), Positives = 98/282 (34%), Gaps = 69/282 (24%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
              +L ++   NN L  +      N+  L          +    N+   K+P       +
Sbjct: 171 LPPSLEFIAAGNNQLEELPELQ--NLPFL--------TAIYADNNSLK-KLPDLP---LS 216

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
           L S+    N LE    P L N   L  +   NN +    P+     P L+ L +R N   
Sbjct: 217 LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYL- 269

Query: 125 GPIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLN 181
                  T +P    SL  +D+S N F+G  L+    N   +    N I    D    L 
Sbjct: 270 -------TDLPELPQSLTFLDVSENIFSG--LSELPPNLYYLNASSNEIRSLCDLPPSLE 320

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
                                       +++S+NK    +P +  +   L+ L  S N+L
Sbjct: 321 ---------------------------ELNVSNNKLI-ELPALPPR---LERLIASFNHL 349

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN 283
             ++P   +NL +   L +  N L    P    S++ L + +
Sbjct: 350 A-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 60/313 (19%), Positives = 108/313 (34%), Gaps = 61/313 (19%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH----------KVLDMRMNNFNGKIPR 57
           L  +D+ NN L  +   PP ++  +   +N L              +    N+   K+P 
Sbjct: 155 LKIIDVDNNSLKKLPDLPP-SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPD 212

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117
                 +L S+    N LE    P L N   L  +   NN +    P+     P L+ L 
Sbjct: 213 LP---LSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLP---PSLEALN 263

Query: 118 LRSNRFWGPIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEV 174
           +R N          T +P    SL  +D+S N F+G  L+    N   +    N I    
Sbjct: 264 VRDNYL--------TDLPELPQSLTFLDVSENIFSG--LSELPPNLYYLNASSNEIRSLC 313

Query: 175 DYMTPLN----SSNYYESI---ILTIKGIDIKMERILTIFMTI------DLSSNKFQGGI 221
           D    L     S+N    +      ++ +      +  +           +  N  +   
Sbjct: 314 DLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE-F 372

Query: 222 PEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV 281
           P++   +  L+      N+   ++P   +NL +   L + +N L    P    S++    
Sbjct: 373 PDIPESVEDLR-----MNSHLAEVPELPQNLKQ---LHVETNPLR-EFPDIPESVED--- 420

Query: 282 LNLSYNQFEGPIP 294
           L ++  +   P  
Sbjct: 421 LRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 47/304 (15%), Positives = 96/304 (31%), Gaps = 58/304 (19%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQL----------NFDSNLTHKVLDMRMNNFNGKIPR 57
           +      + +         P    +             D       L++     +  +P 
Sbjct: 35  SKTEYYNAWSEWERN---APPGNGEQREMAVSRLRDCLDRQAHE--LELNNLGLS-SLPE 88

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117
                 +L SL  + N L   LP    +   L V N     ++       ++ P L+ L 
Sbjct: 89  LP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-------DLPPLLEYLG 137

Query: 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISV--EV 174
           + +N+    + +   +     L+IID+ +N      L     + + +    N +    E+
Sbjct: 138 VSNNQ----LEKLPELQNSSFLKIIDVDNNSLKK--LPDLPPSLEFIAAGNNQLEELPEL 191

Query: 175 DYMTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230
             +  L      +N  + +              L    +I   +N  +      +  L  
Sbjct: 192 QNLPFLTAIYADNNSLKKLPDLPLS--------LE---SIVAGNNILE--ELPELQNLPF 238

Query: 231 LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
           L  +   +N L   +P    +L   E+L++  N L   +P    SL +L V    ++   
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS 293

Query: 291 GPIP 294
              P
Sbjct: 294 ELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 47/292 (16%), Positives = 95/292 (32%), Gaps = 68/292 (23%)

Query: 24  YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83
           +  P N+      SN   +      +N   ++P +     + T      +  E   PP  
Sbjct: 2   FINPRNV------SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGN 54

Query: 84  VN-------------CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGEN 130
                                L + N  ++   P   E+ P L+ L+   N         
Sbjct: 55  GEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP---ELPPHLESLVASCNSL------- 103

Query: 131 TTIVPFP----SLRIIDLSHNEFTGVL--LTGYLDNFKAMMHGNNISV--EVDYMTPLN- 181
           T +   P    SL + + +    + +   L  YL      +  N +    E+   + L  
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALSDLPPLLE-YLG-----VSNNQLEKLPELQNSSFLKI 157

Query: 182 ---SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
               +N  + +      +             I   +N+ +  +PE +  L  L  +   +
Sbjct: 158 IDVDNNSLKKLPDLPPSL-----------EFIAAGNNQLE-ELPE-LQNLPFLTAIYADN 204

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
           N+L   +P    +L   ES+   +N+L      +L +L +L+ +    N  +
Sbjct: 205 NSLK-KLPDLPLSL---ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 42/277 (15%), Positives = 93/277 (33%), Gaps = 53/277 (19%)

Query: 5   GIATLYYLDLSNNFLTNIEYFP-PTNMTQLNFDSN-LTH--------KVLDMRMNNFNGK 54
              +L  +   NN L  +        +T +  D+N L          + L++R N     
Sbjct: 213 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLT-D 271

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           +P       +LT L+++ N   G L     N   L  LN  +N+I     +  ++ P L+
Sbjct: 272 LPELP---QSLTFLDVSENIFSG-LSELPPN---LYYLNASSNEIR----SLCDLPPSLE 320

Query: 115 VLILRSNRFWGPIGENTTIVP--FPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS 171
            L + +N+           +P   P L  +  S N      +     N K + +  N + 
Sbjct: 321 ELNVSNNKL--------IELPALPPRLERLIASFNHLAE--VPELPQNLKQLHVEYNPLR 370

Query: 172 V---EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL 228
                 + +  L  +++   +    +         L     + + +N  +   P++   +
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQN--------LK---QLHVETNPLRE-FPDIPESV 418

Query: 229 NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML 265
              + L ++   +      +     ++E      +  
Sbjct: 419 ---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 18/104 (17%)

Query: 204 LTIFMTIDLSSNKFQGGIPEVVGKL-------------NLLKGLNISHNNLTGDIPSSLR 250
           +        + ++++   P   G+                   L +++  L+  +P    
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP 91

Query: 251 NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
           +L     L  S N L   +P    SLK L V N +        P
Sbjct: 92  HLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 13/103 (12%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH--------KVLDMRMNNFNGKIPR 57
              L  L +  N L      P  ++  L  +S+L          K L +  N    + P 
Sbjct: 356 PQNLKQLHVEYNPLREFPDIP-ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPD 413

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
                 ++  L +N  R+  P   +      LE     ++  +
Sbjct: 414 IP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 50/292 (17%), Positives = 94/292 (32%), Gaps = 68/292 (23%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN--FNGKIPRKFVKSCN 64
           ++   L+L +N L ++ +     +TQL          L +  N   F G   +    + +
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQL--------TKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRF 123
           L  L+L+ N +   +  + +    LE L+  ++ +      +    L  L  L +     
Sbjct: 80  LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 124 WGPIGENTTIVPF-----PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178
                              SL ++ ++ N F    L       + +              
Sbjct: 139 -------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF------------ 179

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
                                          +DLS  + +   P     L+ L+ LN+SH
Sbjct: 180 -------------------------------LDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVLNLSYNQF 289
           NN         + L  ++ LD S N ++     +L      L+ LNL+ N F
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 38/251 (15%), Positives = 78/251 (31%), Gaps = 36/251 (14%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILR 119
             + T L L  N+L+            L  L++ +N ++              L+ L L 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNI-SVEV 174
            N     I  ++  +    L  +D  H+    +       + + +    +   +      
Sbjct: 87  FNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKG 233
                L+S        L                  + ++ N FQ      +  +L  L  
Sbjct: 144 GIFNGLSS--------LE----------------VLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI 293
           L++S   L    P++  +L+ ++ L++S N            L  L VL+ S N      
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-S 238

Query: 294 PRGSQFNTFPN 304
            +    +   +
Sbjct: 239 KKQELQHFPSS 249

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML--V 266
            I  +S      +P   G  +    L +  N L          LT++  L LSSN L   
Sbjct: 11  EIRCNSKGLTS-VPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 267 GHIPTQLTSLKYLSVLNLSYNQ 288
           G           L  L+LS+N 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNG 89

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 53/286 (18%), Positives = 97/286 (33%), Gaps = 54/286 (18%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN 71
           +      L  +   P          +N    +L++  N         F    +L  L L+
Sbjct: 48  VICVRKNLREV---PD------GISTNTR--LLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 72  GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
            N +      +     +L  L + +N++          L +L+ L LR+N          
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-------E 149

Query: 132 TIVPF-----PSLRIIDLSH-NEFTGV---LLTGYLDNFKAM-MHGNNISVEVDYMTPLN 181
           +I  +     PSLR +DL      + +      G L N + + +   N+  E+  +TPL 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLR-EIPNLTPLI 207

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNL 241
                                 L     +DLS N      P     L  L+ L +  + +
Sbjct: 208 K---------------------LD---ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
                ++  NL  +  ++L+ N L        T L +L  ++L +N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 49/253 (19%), Positives = 91/253 (35%), Gaps = 33/253 (13%)

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           +P     S N   LNL+ N+++     S  +  HLE+L +  N I          L  L 
Sbjct: 58  VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115

Query: 115 VLILRSNRFWGPIG--ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV 172
            L L  NR    +    N   V    L+ + L +N     + +   +   ++   +    
Sbjct: 116 TLELFDNR----LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD---- 166

Query: 173 EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK 232
                  L            +  I       L+    ++L+    +  IP +   L  L 
Sbjct: 167 -------LGELKR-------LSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLD 210

Query: 233 GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEG 291
            L++S N+L+   P S + L  ++ L +  + +   I      +L+ L  +NL++N    
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTL 269

Query: 292 PIPRGSQFNTFPN 304
            +P    F    +
Sbjct: 270 -LPHDL-FTPLHH 280

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 5   GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTH-KVLDMRM 48
           G+A L  L+L +N LT I        + + +L   +N            +   + LD+  
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169

Query: 49  NNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL 107
                 I    F    NL  LNL    L     P+L     L+ L++  N ++   P   
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150
           + L  LQ L +  ++    I  N       SL  I+L+HN  T
Sbjct: 228 QGLMHLQKLWMIQSQIQV-IERN-AFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 21/245 (8%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
                L+L  N +  I+     ++  L        ++L +  N+    I    F    NL
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHL--------EILQLSRNHIR-TIEIGAFNGLANL 114

Query: 66  TSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW 124
            +L L  NRL   +P  + V    L+ L + NN I          +P L+ L L   +  
Sbjct: 115 NTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL 173

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNI-SVEVDYMTPLNS 182
             I E        +LR ++L+      +     L     + + GN++ ++       L  
Sbjct: 174 SYISEGA-FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 183 SNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
               + + +    I+ I+      L   + I+L+ N       ++   L+ L+ +++ HN
Sbjct: 233 L---QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

Query: 240 NLTGD 244
               +
Sbjct: 290 PWNCN 294

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 9e-17
 Identities = 58/291 (19%), Positives = 101/291 (34%), Gaps = 54/291 (18%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
              +  +   L+ +   P          SN  +  L++  NN        F    +L  L
Sbjct: 56  FSKVVCTRRGLSEV---PQ------GIPSNTRY--LNLMENNIQMIQADTFRHLHHLEVL 104

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
            L  N +      +      L  L + +N +        E L +L+ L LR+N       
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI----- 159

Query: 129 ENTTI-----VPFPSLRIIDLSH-NEFTGV---LLTGYLDNFKAM-MHGNNISVEVDYMT 178
              +I        PSL  +DL    +   +      G L N K + +   NI  ++  +T
Sbjct: 160 --ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIK-DMPNLT 215

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
           PL                       L     +++S N F    P     L+ LK L + +
Sbjct: 216 PLVG---------------------LE---ELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           + ++    ++   L  +  L+L+ N L        T L+YL  L+L +N +
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 25/165 (15%)

Query: 5   GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTH-KVLDMRM 48
           G+A+L  L+L +N+LT I        + + +L   +N            +     LD+  
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 49  NNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWL 107
                 I    F    NL  LNL    ++    P+L     LE L +  N   +  P   
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSF 238

Query: 108 EILPELQVLILRSNRFWGPIG--ENTTIVPFPSLRIIDLSHNEFT 150
             L  L+ L + +++    +   E        SL  ++L+HN  +
Sbjct: 239 HGLSSLKKLWVMNSQ----VSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 41/248 (16%), Positives = 64/248 (25%), Gaps = 79/248 (31%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
             + +      L   +P  +    +   LN+  N I     +    L  L+VL L  N  
Sbjct: 55  QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 124 WGPIGENTTIVPF-----PSLRIIDLSHNE--------FTGVLLTGYLDNFKAMMHGNNI 170
                    I         SL  ++L  N         F  +     L      +  N I
Sbjct: 112 -------RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW-----LRNNPI 159

Query: 171 SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230
                                                    + S  F          +  
Sbjct: 160 E---------------------------------------SIPSYAFNR--------VPS 172

Query: 231 LKGLNISHNNLTGDIPS-SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           L  L++        I   +   L  ++ L+L    +   +P  LT L  L  L +S N F
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHF 230

Query: 290 EGPIPRGS 297
              I  GS
Sbjct: 231 PE-IRPGS 237

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 32/117 (27%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  L  L++S N    I       ++                                +
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLS--------------------------------S 243

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
           L  L +  +++      +      L  LN+ +N ++    +    L  L  L L  N
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.5 bits (191), Expect = 9e-16
 Identities = 58/313 (18%), Positives = 114/313 (36%), Gaps = 46/313 (14%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
           A + Y+DLS N +  +     T+ ++L    +L    L +        I    F    +L
Sbjct: 30  AHVNYVDLSLNSIAEL---NETSFSRL---QDLQF--LKVEQQTPGLVIRNNTFRGLSSL 81

Query: 66  TSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSNR 122
             L L+ N+    L         +LEVL +    ++      N+ + L  L++L+LR N 
Sbjct: 82  IILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS 182
               I   +  +      ++DL+ N+    +    L NF+   H   + +    +  +N 
Sbjct: 141 IKK-IQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQG-KHFTLLRLSSITLQDMNE 197

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLK----GLNIS 237
                                 T   T+DLS N F+  + +     +   K     L+ S
Sbjct: 198 YWLGWEKCGNPFK--------NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 238 HNNLTGDIPSSLRNL----------TEVESLDLSSNMLV---GHIPTQLTSLKYLSVLNL 284
           +N  +    ++ ++           + V++ DLS + +      + +  T L+    L L
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ---LTL 306

Query: 285 SYNQFEGPIPRGS 297
           + N+    I   +
Sbjct: 307 AQNEIN-KIDDNA 318

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 64/330 (19%), Positives = 105/330 (31%), Gaps = 48/330 (14%)

Query: 9   LYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRKFVKSCN 64
           L  L L  N    +E   F    N+  L      L   VL              F    +
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF----------FKPLTS 130

Query: 65  LTSLNLNGNRLEGPLPPSLVNCH--HLEVLNVGNNQINDNFPNWLEILPELQVLILRS-- 120
           L  L L  N ++  + P+    +     VL++  N++       L         +LR   
Sbjct: 131 LEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 121 ------NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLD--------------- 159
                 N +W    +        S+  +DLS N F   +   + D               
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 160 -NFKAMMHGNNISVEVDYMTPLNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSN 215
            N  +     N     ++      ++  ++  L+   I  +   +    T    + L+ N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 216 KFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQL-T 274
           +           L  L  LN+S N L         NL ++E LDLS N +   +  Q   
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFL 368

Query: 275 SLKYLSVLNLSYNQFEGPIPRGSQFNTFPN 304
            L  L  L L  NQ +  +P G  F+   +
Sbjct: 369 GLPNLKELALDTNQLKS-VPDGI-FDRLTS 396

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 32/159 (20%)

Query: 2   WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FV 60
             L  + +   DLS + +  +     ++ T L        + L +  N  N KI    F 
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDL--------EQLTLAQNEIN-KIDDNAFW 320

Query: 61  KSCNLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQI----NDNFPNWLEILPELQV 115
              +L  LNL+ N L   +      N   LEVL++  N I    + +F      LP L+ 
Sbjct: 321 GLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLG----LPNLKE 375

Query: 116 LILRSNRFWGPIGENTTI-----VPFPSLRIIDLSHNEF 149
           L L +N+         ++         SL+ I L  N +
Sbjct: 376 LALDTNQL-------KSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 27/167 (16%)

Query: 4   LGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
                   L LS+  L ++  +        N   N +   LD+  N F   + ++F  + 
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236

Query: 64  NLT---SLNLNGNRLEGPLPP-----SLVNCH-------HLEVLNVGNNQINDNFPNWLE 108
             T   SL L+ +   G            N          ++  ++  ++I     +   
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVP-----FPSLRIIDLSHNEFT 150
              +L+ L L  N           I          L  ++LS N   
Sbjct: 297 HFTDLEQLTLAQNEI-------NKIDDNAFWGLTHLLKLNLSQNFLG 336

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 3e-15
 Identities = 49/267 (18%), Positives = 82/267 (30%), Gaps = 71/267 (26%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH--------KVLDMRMNNFNGKIPRKF 59
              L L+   L+++    P  +T L    N L          + LD   N  +  +P   
Sbjct: 61  FSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLS-TLPELP 119

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
               +L  L+++ N+L   LP        LE +N  NNQ+    P   E+   L+VL +R
Sbjct: 120 ---ASLKHLDVDNNQLTM-LPELPAL---LEYINADNNQLT-MLP---ELPTSLEVLSVR 168

Query: 120 SNRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMT 178
           +N+        T +   P SL  +D+S N                     ++        
Sbjct: 169 NNQL-------TFLPELPESLEALDVSTNLLE------------------SLPAVPVRNH 203

Query: 179 PLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH 238
               +  +                            N+    IPE +  L+    + +  
Sbjct: 204 HSEETEIF-----------------------FRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNML 265
           N L+  I  SL   T            
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 1e-14
 Identities = 47/309 (15%), Positives = 95/309 (30%), Gaps = 72/309 (23%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTS 67
                L                     +  +     L +   N +  +P        +T 
Sbjct: 36  WEKQALPGENRNEAVSLLK--------ECLINQFSELQLNRLNLS-SLPDNLPP--QITV 84

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L +  N L   LP    +   LE L+  +N+++   P   E+   L+ L + +N+     
Sbjct: 85  LEITQNALI-SLPELPAS---LEYLDACDNRLST-LP---ELPASLKHLDVDNNQL---- 132

Query: 128 GENTTIVP--FPSLRIIDLSHNEFTGV--LLTG--YLDNFKAMMHGNNISVEVDYMTPLN 181
               T++P     L  I+  +N+ T +  L T    L      +  N ++   +    L 
Sbjct: 133 ----TMLPELPALLEYINADNNQLTMLPELPTSLEVLS-----VRNNQLTFLPELPESLE 183

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK----GLNIS 237
                                       +D+S+N  +  +P V  + +  +         
Sbjct: 184 ---------------------------ALDVSTNLLES-LPAVPVRNHHSEETEIFFRCR 215

Query: 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS 297
            N +T  IP ++ +L    ++ L  N L   I   L+        +     F     + +
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 298 QFNTFPNDS 306
             +    D+
Sbjct: 275 TLHRPLADA 283

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 33/122 (27%), Positives = 47/122 (38%), Gaps = 22/122 (18%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
            A L Y++  NN LT +    P   T L        +VL +R N     +P       +L
Sbjct: 139 PALLEYINADNNQLTML----PELPTSL--------EVLSVRNNQLT-FLPELPE---SL 182

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLE----VLNVGNNQINDNFPNWLEILPELQVLILRSN 121
            +L+++ N LE  LP   V  HH E          N+I    P  +  L     +IL  N
Sbjct: 183 EALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDN 240

Query: 122 RF 123
             
Sbjct: 241 PL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 8e-11
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 38/164 (23%)

Query: 6   IATLYYLDLSNNFLTNIEYFP--PTNMTQLNFDSN-LTH--------KVLDMRMNNFNGK 54
            A+L YLD  +N L+ +   P  P ++  L+ D+N LT         + ++   N     
Sbjct: 99  PASLEYLDACDNRLSTL---PELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-M 154

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN---DNFPNWLEILP 111
           +P       +L  L++  N+L   LP    +   LE L+V  N +               
Sbjct: 155 LPELP---TSLEVLSVRNNQLTF-LPELPES---LEALDVSTNLLESLPAVPVRNHHSEE 207

Query: 112 ELQVLILRSNRFWGPIGENTTIVPF-----PSLRIIDLSHNEFT 150
                  R NR         T +P           I L  N  +
Sbjct: 208 TEIFFRCRENRI--------THIPENILSLDPTCTIILEDNPLS 243

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 53/292 (18%), Positives = 99/292 (33%), Gaps = 37/292 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH---------KVLDMRMNNFNGKIPRK 58
           L YL+   N LT ++      +T LN   N LT            LD  +N    K+   
Sbjct: 108 LTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD-- 165

Query: 59  FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLI 117
                 LT+L+ + N++   L  S      L  LN   N I   +         +L  L 
Sbjct: 166 VTPQTQLTTLDCSFNKITE-LDVS--QNKLLNRLNCDTNNITKLDLNQ----NIQLTFLD 218

Query: 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM 177
             SN+          + P   L   D S N  T + ++             ++  E+D  
Sbjct: 219 CSSNKL-----TEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLL-EIDLT 272

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
                  +       IK +D+     L     +D  +      +   + +   L  L ++
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTHNTQLY---LLDCQAAGIT-ELD--LSQNPKLVYLYLN 326

Query: 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           +  LT ++   + + T+++SL   +  +     + +  +  L+    +  Q 
Sbjct: 327 NTELT-ELD--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 61/308 (19%), Positives = 106/308 (34%), Gaps = 61/308 (19%)

Query: 6   IATLYYLDLSNNFLTNIEYFP-PTNMTQLNFDSN---------LTH-KVLDMRMNNFNGK 54
           +ATL  LD  N+ +T++      T +T+L   SN          T+   L    N     
Sbjct: 41  LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLT-N 99

Query: 55  IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI--LPE 112
           +         LT LN + N+L   L  S      L  LN   N + +     +++    +
Sbjct: 100 LD--VTPLTKLTYLNCDTNKLT-KLDVS--QNPLLTYLNCARNTLTE-----IDVSHNTQ 149

Query: 113 LQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG-----YLDNFKAMMHG 167
           L  L    N+          + P   L  +D S N+ T + ++       L+        
Sbjct: 150 LTELDCHLNK----KITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN-----CDT 200

Query: 168 NNI-SVEVDYMTPLN----SSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222
           NNI  ++++    L     SSN        +  ID+     LT     D S N     + 
Sbjct: 201 NNITKLDLNQNIQLTFLDCSSNK-------LTEIDVTPLTQLT---YFDCSVNPLT-ELD 249

Query: 223 EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282
             V  L+ L  L+    +L  +I  +  + T++          +  +   +T    L +L
Sbjct: 250 --VSTLSKLTTLHCIQTDLL-EIDLT--HNTQLIYFQAEGCRKIKELD--VTHNTQLYLL 302

Query: 283 NLSYNQFE 290
           +       
Sbjct: 303 DCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 56/285 (19%), Positives = 97/285 (34%), Gaps = 60/285 (21%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           A+             I       +T L+  ++         + +  G       K   LT
Sbjct: 21  ASEVAAAFEMQATDTISEEQLATLTSLDCHNS--------SITDMTG-----IEKLTGLT 67

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWG 125
            L    N +   L  S     +L  L   +N++ + +       L +L  L   +N+   
Sbjct: 68  KLICTSNNITT-LDLS--QNTNLTYLACDSNKLTNLDVTP----LTKLTYLNCDTNKL-- 118

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
                  +   P L  ++ + N  T                     ++V + T L   + 
Sbjct: 119 ---TKLDVSQNPLLTYLNCARNTLT--------------------EIDVSHNTQLTELDC 155

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245
           + +  +T   +D+  +  LT   T+D S NK    +   V +  LL  LN   NN+T  +
Sbjct: 156 HLNKKITK--LDVTPQTQLT---TLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KL 206

Query: 246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
              L    ++  LD SSN L   I   +T L  L+  + S N   
Sbjct: 207 D--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 46/295 (15%), Positives = 89/295 (30%), Gaps = 59/295 (20%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTH-KVLDMRMNNFNGKIPR 57
           L YL+ + N LT I+    T +T+L+   N           T    LD   N    ++  
Sbjct: 129 LTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD- 186

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI--LPELQV 115
              ++  L  LN + N +       L     L  L+  +N++ +     +++  L +L  
Sbjct: 187 -VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-----IDVTPLTQLTY 237

Query: 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNI--SVE 173
                N           +     L  +     +   + LT           G      ++
Sbjct: 238 FDCSVNPL-----TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 174 VDYMTPLN----SSNYYESIILT--------------IKGIDIKMERILTIFMTIDLSSN 215
           V + T L      +     + L+              +  +D+     L    ++   + 
Sbjct: 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLK---SLSCVNA 349

Query: 216 KFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVES-----LDLSSNML 265
             Q     V GK+  L     +          +L N +   +     LD   N +
Sbjct: 350 HIQD-FSSV-GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 24/185 (12%), Positives = 58/185 (31%), Gaps = 19/185 (10%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTH-------KVLDMRMNNFNGKIPRKFV 60
           L Y D S N LT ++    + +T L+     L         +++  +             
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT 294

Query: 61  KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
            +  L  L+     +   L  S      L  L + N ++ +     +    +L+ L   +
Sbjct: 295 HNTQLYLLDCQAAGIT-ELDLS--QNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVN 348

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-LTGYLDNFKAMMHGNNISVEVDYMTP 179
                 I + +++   P+L     +  +   +   T   ++    +  + +    + M  
Sbjct: 349 AH----IQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404

Query: 180 LNSSN 184
                
Sbjct: 405 EPGDG 409

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 28/153 (18%), Positives = 43/153 (28%), Gaps = 22/153 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           LY LD     +T ++      +  L  ++  LT   LD+  N               L S
Sbjct: 299 LYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE--LDVSHNT-------------KLKS 343

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
           L+     ++     S+     L        Q         E L    + I  S       
Sbjct: 344 LSCVNAHIQD--FSSVGKIPALNNNFEAEGQTITMPK---ETLTNNSLTIAVSPDLLDQF 398

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDN 160
           G    I P     + D + N  T   L+     
Sbjct: 399 GNPMNIEP-GDGGVYDQATNTITWENLSTDNPA 430

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.6 bits (178), Expect = 5e-14
 Identities = 50/261 (19%), Positives = 90/261 (34%), Gaps = 35/261 (13%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           T++Y  +SN  L     F   + +  +  +     +  +  + F       +    N+  
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKAL---SIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI 127
            N   +                  L+  NN + D        L EL+ LIL+ N+     
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSS 183
                     SL+ +D+S N  +     G     K++    M  N ++  +    P    
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR-- 422

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                               + +   +DL SNK +  IP+ V KL  L+ LN++ N L  
Sbjct: 423 --------------------IKV---LDLHSNKIKS-IPKQVVKLEALQELNVASNQLK- 457

Query: 244 DIP-SSLRNLTEVESLDLSSN 263
            +P      LT ++ + L +N
Sbjct: 458 SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.9 bits (171), Expect = 3e-13
 Identities = 54/327 (16%), Positives = 107/327 (32%), Gaps = 41/327 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTH-KVLDMRMNNFNGK 54
           L YLDLS+N L  I   P  N+  L+   N             ++  K L +   +    
Sbjct: 71  LEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130

Query: 55  IPRKFVK-SCNLTSLNLNGNRLEGPLPPSLVNCH--HLEVLNVGNNQINDNFPNWLEILP 111
                   + +   L L     E   P  L + +   L ++   N + +      ++ + 
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 112 ELQVLILRSNRFWGPIGENTTIVP---------FPSLRIIDLSHNEFTGVLLTGYLDNFK 162
            L++  ++            +I+            +L  I+ + N F  +L   +     
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 163 AMMHGNNISVEVDYMTPLNSSN------YYESI-ILTIKGIDIKMERILTIFMTIDLSSN 215
                N            + S           +           +  I +     + + +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 216 KFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML-----VGHIP 270
             +        K++    L+ S+N LT  +  +  +LTE+E+L L  N L     +  + 
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 271 TQLTSLKYLSVLNLSYNQFEGPIPRGS 297
           TQ+ SL+ L   ++S N       +G 
Sbjct: 371 TQMKSLQQL---DISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 45/292 (15%), Positives = 93/292 (31%), Gaps = 27/292 (9%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
                L++S N+++ +     +++  L   S L   +L +  N         F  +  L 
Sbjct: 21  QKTTILNISQNYISEL---WTSDILSL---SKLR--ILIISHNRIQYLDISVFKFNQELE 72

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWG 125
            L+L+ N+L        VN   L+ L++  N  +          + +L+ L L +     
Sbjct: 73  YLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-- 127

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNY 185
              E ++++P   L I  +              +  +     +   V           + 
Sbjct: 128 ---EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 186 YESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI 245
               +  ++  +IK    +          +               L  +  + N+     
Sbjct: 185 SVKTVANLELSNIK---CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR-- 239

Query: 246 PSSLRNLTEVESLDLSSNMLVGHIPTQL-----TSLKYLSVLNLSYNQFEGP 292
              L   T V    +S+  L G +  +      TSLK LS+  +  + F  P
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIP 270
           ++S N         +  L+ L+ L ISHN +     S  +   E+E LDLS N LV    
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC 86

Query: 271 TQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPN 304
               +LK+   L+LS+N F+  +P   +F     
Sbjct: 87  HPTVNLKH---LDLSFNAFDA-LPICKEFGNMSQ 116

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 40/169 (23%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLN------------------FD--SNLTHKVLDMR 47
              +LD SNN LT+  +    ++T+L                        +L    LD+ 
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ--LDIS 382

Query: 48  MNNFNGKIPR-KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW 106
            N+ +    +     + +L SLN++ N L   +   L     ++VL++ +N+I  + P  
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQ 439

Query: 107 LEILPELQVLILRSNRFWGPIGENTTIVP------FPSLRIIDLSHNEF 149
           +  L  LQ L + SN+           VP        SL+ I L  N +
Sbjct: 440 VVKLEALQELNVASNQL--------KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 209 TIDLSSNKFQ---GGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML 265
            +D S N        +            LNIS N ++    S + +L+++  L +S N +
Sbjct: 4   LVDRSKNGLIHVPKDLS------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57

Query: 266 VGHIPTQLTSLKYLSVLNLSYNQF 289
                +     + L  L+LS+N+ 
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKL 81

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 49/289 (16%), Positives = 92/289 (31%), Gaps = 37/289 (12%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
             +  LDLSNN +T I          L        + L +  N  N      F    +L 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNL--------QALVLTSNGINTIEEDSFSSLGSLE 103

Query: 67  SLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPN-WLEILPELQVLILRSNRFW 124
            L+L+ N L   L  S       L  LN+  N             L +LQ+L + +   +
Sbjct: 104 HLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNI-SVEVDYMTP 179
             I           L  +++  ++         L + + +    +H      +   ++  
Sbjct: 163 TKIQRK-DFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
            +S        L ++  D+                ++   G    + K    + + I+  
Sbjct: 221 TSSVEC-----LELRDTDLDTFHF-----------SELSTGETNSLIKKFTFRNVKITDE 264

Query: 240 NLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYN 287
           +L   +   L  ++ +  L+ S N L   +P      L  L  + L  N
Sbjct: 265 SLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 7e-13
 Identities = 44/307 (14%), Positives = 101/307 (32%), Gaps = 56/307 (18%)

Query: 13  DLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG 72
             S+  L +I       +             LD+  N           +  NL +L L  
Sbjct: 37  KGSSGSLNSIPSGLTEAVK-----------SLDLSNNRITYISNSDLQRCVNLQALVLTS 85

Query: 73  NRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT 131
           N +   +   S  +   LE L++  N +++   +W + L  L  L L  N  +  +GE +
Sbjct: 86  NGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETS 143

Query: 132 TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNI-SVEVDYMTPLNSSNYY 186
                  L+I+ + + +    +          +    +  +++ S E   +  + +    
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN---- 199

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTG-- 243
                            ++    + L   +    + E+     + ++ L +   +L    
Sbjct: 200 -----------------VS---HLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFH 238

Query: 244 --DIPS----SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS 297
             ++ +    SL       ++ ++   L   +   L  +  L  L  S NQ +  +P G 
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGI 296

Query: 298 QFNTFPN 304
            F+   +
Sbjct: 297 -FDRLTS 302

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 20/157 (12%)

Query: 5   GIATLYYLDLSNNF-LTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC 63
            +  L  L + N    T I+      +T L        + L++  ++     P+      
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFL--------EELEIDASDLQSYEPKSLKSIQ 198

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI--------LPELQV 115
           N++ L L+  +    L   +     +E L + +  ++    + L              + 
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 116 LILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
           + +     +  +     +     L  ++ S N+   V
Sbjct: 259 VKITDESLFQVMK---LLNQISGLLELEFSRNQLKSV 292

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 33/234 (14%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
                 + L+GNR+      S   C +L +L + +N +          L  L+ L L  N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNI-SVEVDY 176
                + +  T      L  + L        L  G      A+    +  N + ++  D 
Sbjct: 91  AQLRSV-DPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 177 MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236
              L +        LT                 + L  N+           L+ L  L +
Sbjct: 149 FRDLGN--------LT----------------HLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 237 SHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQF 289
             N +    P + R+L  + +L L +N L   +PT+ L  L+ L  L L+ N +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 21/164 (12%)

Query: 7   ATLYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSN------------LTH-KVLDMRMNN 50
           A    + L  N ++++    F    N+T L   SN            L   + LD+  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 51  FNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLE 108
               +    F     L +L+L+   L+  L P        L+ L + +N +     +   
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
            L  L  L L  NR    + E        SL  + L  N    V
Sbjct: 151 DLGNLTHLFLHGNRISS-VPER-AFRGLHSLDRLLLHQNRVAHV 192

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 35/168 (20%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPP------TNMTQLNFDSN-LTH------------KVLD 45
           G+A L  LDLS+N    +    P        +  L+ D   L              + L 
Sbjct: 78  GLALLEQLDLSDN--AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 46  MRMNNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP 104
           ++ N     +P   F    NLT L L+GNR+      +    H L+ L +  N++    P
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 105 NWLEILPELQVLILRSNRFWGPIGENTTI-----VPFPSLRIIDLSHN 147
           +    L  L  L L +N         + +      P  +L+ + L+ N
Sbjct: 195 HAFRDLGRLMTLYLFANNL-------SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            I L  N+              L  L +  N L     ++   L  +E LDLS N  +  
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 269 IPTQ-LTSLKYLSVLNLSYNQFEGPIPRGS 297
           +       L  L  L+L     +  +  G 
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQE-LGPGL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 209 TIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTGDIPS-SLRNLTEVESLDLSSNMLV 266
            +DLS N     +       L  L  L++    L  ++     R L  ++ L L  N L 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

Query: 267 GHIPTQ-LTSLKYLSVLNLSYNQFEGPIPRGS 297
             +P      L  L+ L L  N+    +P  +
Sbjct: 143 -ALPDDTFRDLGNLTHLFLHGNRISS-VPERA 172

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.4 bits (169), Expect = 6e-13
 Identities = 43/271 (15%), Positives = 99/271 (36%), Gaps = 47/271 (17%)

Query: 27  PTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85
            T + Q+  D         +++  +    + +  +   ++  +  N + ++  +   +  
Sbjct: 8   STPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKS-VQG-IQY 63

Query: 86  CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS 145
             ++  L +  N++ D  P  L  L  L  L L  N+    I + +++     L+ + L 
Sbjct: 64  LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLE 117

Query: 146 HNEFTGVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201
           HN  + +     L +   +    +  N I+     +T L+                    
Sbjct: 118 HNGISDI---NGLVHLPQLESLYLGNNKITD----ITVLSR------------------- 151

Query: 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLS 261
             LT   T+ L  N+    I  +   L  L+ L +S N+++ D+  +L  L  ++ L+L 
Sbjct: 152 --LTKLDTLSLEDNQISD-IVPL-AGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELF 205

Query: 262 SNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292
           S   +       ++L   + +  +      P
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.0 bits (168), Expect = 9e-13
 Identities = 55/290 (18%), Positives = 99/290 (34%), Gaps = 58/290 (20%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK 61
           D   A     +L    +T+        ++ Q+  +++    V              + ++
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--------------QGIQ 62

Query: 62  SC-NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
              N+T L LNGN+L   + P L N  +L  L +  N+I D     L+ L +L+ L L  
Sbjct: 63  YLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEH 118

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTP 179
           N     I +   +V  P L  + L +N+ T + +   L     + +  N IS        
Sbjct: 119 NG----ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-------- 166

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV--VGKLNLLKGLNIS 237
                            DI     LT    + LS N     I ++  +  L  L  L + 
Sbjct: 167 -----------------DIVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELF 205

Query: 238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
                    +   NL    ++  +   L    P  ++        N+ ++
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 35/201 (17%), Positives = 64/201 (31%), Gaps = 19/201 (9%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTS 67
           L  L L +N +++I        +  L   +N    +  +                  L +
Sbjct: 111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT-------------KLDT 157

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF-WGP 126
           L+L  N++   + P L     L+ L +  N I+D     L  L  L VL L S      P
Sbjct: 158 LSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 213

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
           I   + +V   +++  D S      +   G  +      H    + EV ++     +   
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

Query: 187 ESIILTIKGIDIKMERILTIF 207
                  +      E     +
Sbjct: 274 AKARFHGRVTQPLKEVYTVSY 294

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 8e-13
 Identities = 52/284 (18%), Positives = 103/284 (36%), Gaps = 43/284 (15%)

Query: 26  PPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV 84
            PT +  +  D  L +   +    +N    + +  +    +T+L+  G  +       + 
Sbjct: 5   QPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTI--EGVQ 60

Query: 85  NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDL 144
             ++L  L + +NQI D  P  L+ L ++  L L  N     +   + I    S++ +DL
Sbjct: 61  YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDL 114

Query: 145 SHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI 203
           +  + T V     L N + + +  N I+     ++PL                       
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQITN----ISPLAG--------------------- 149

Query: 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN 263
           LT    + + + +     P  +  L+ L  L    N ++ DI S L +L  +  + L +N
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DI-SPLASLPNLIEVHLKNN 205

Query: 264 MLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSY 307
            +    P  L +   L ++ L+           +     PN   
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 46/289 (15%), Positives = 100/289 (34%), Gaps = 32/289 (11%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK 61
           D  +A    +    + +T+         +T L+        +  ++  N           
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLN----------- 63

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
             NL  L L  N++       L N   +  L +  N + +     +  L  ++ L L S 
Sbjct: 64  --NLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTST 117

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-MMHGNNISVEVDYMTPL 180
           +    I + T +    +L+++ L  N+ T +     L N +   +    +S     +TPL
Sbjct: 118 Q----ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS----DLTPL 169

Query: 181 NSSNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
            + +   ++      I DI     L   + + L +N+        +   + L  + +++ 
Sbjct: 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQ 227

Query: 240 NLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
            +T        NL     +   S   +   P  ++     +  NL++N 
Sbjct: 228 TITNQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 31/249 (12%)

Query: 9   LYYLDLSNNFLTNIEYFPP-TNMTQLNFDSN----------LTH-KVLDMRMNNFNGKIP 56
           L  L+L +N +T++      T +T+L    N          L   K LD+         P
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 57  RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116
                  NL  L L+ N++   + P L    +L+ L++GN Q++D  P  L  L +L  L
Sbjct: 125 --LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS-VEV 174
               N+    I + + +   P+L  + L +N+ + V       N   + +    I+   V
Sbjct: 179 KADDNK----ISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV 234

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234
            Y   L   N        +KG         TI      +S      +   +  ++     
Sbjct: 235 FYNNNLVVPN-------VVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQ 287

Query: 235 NISHNNLTG 243
           +++  N T 
Sbjct: 288 SVTFKNTTV 296

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 52/318 (16%), Positives = 102/318 (32%), Gaps = 47/318 (14%)

Query: 2   WDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPR--KF 59
            ++ +  L +L LSN  L +                     V    +        +  +F
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCHH-----LEVLNVGNNQINDNFPNWLEILPELQ 114
                +  LN+    +   +              L + +V N     +      +  E+ 
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 115 VLILRSNRFWGPIGENTTIVPF--PSLRIIDLSHNEFTGVLLTGY--LDNFKAM-MHGNN 169
           + +L  +           + P    S   ++ + N FT  +  G   L   + + +  N 
Sbjct: 333 IKMLSISD----TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 170 I-SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV-VGK 227
           + +     +   N                      ++   T+D+S N       +     
Sbjct: 389 LKNFFKVALMTKN----------------------MSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 228 LNLLKGLNISHNNLTGDIPSSL-RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSY 286
              +  LN+S N LTG +   L   +     LDL +N +   IP  +T L+ L  LN++ 
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLPPKVKV---LDLHNNRI-MSIPKDVTHLQALQELNVAS 482

Query: 287 NQFEGPIPRGSQFNTFPN 304
           NQ +  +P G  F+   +
Sbjct: 483 NQLKS-VPDGV-FDRLTS 498

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.7 bits (160), Expect = 9e-12
 Identities = 50/300 (16%), Positives = 100/300 (33%), Gaps = 29/300 (9%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG-KIPRKFVKSCNLTS 67
           L YLD+S+N L NI       M       +L H  LD+  N+F+   + ++F     LT 
Sbjct: 102 LEYLDVSHNRLQNI---SCCPMA------SLRH--LDLSFNDFDVLPVCKEFGNLTKLTF 150

Query: 68  LNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           L L+  +  +  L P         +L++ +  I       L+I     + ++        
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA-----MMHGNNISVEVDYMTPLN 181
           +  N ++     L++ ++  N+     L  +L           +   +I         L 
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 182 SSNYYESII-LTIKGIDIK----------MERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230
              +   +  L I  + I            E  L   M   + +  F      +      
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 231 LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
           +    +S ++          + +    L+ + N+    +    ++LK L  L L  N  +
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 44/262 (16%), Positives = 84/262 (32%), Gaps = 39/262 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           + YL++ N  +T          ++    S     +  ++   F       +     +   
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSL---MIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF--WGP 126
            L+ +           +      LN   N   D+       L  LQ LIL+ N    +  
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVL---LTGYLDNFKAM-MHGNNISVEVDYMTPLNS 182
           +   T      SL  +D+S N            + ++   + +  N ++  V    P   
Sbjct: 395 VALMTK--NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK- 451

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT 242
                   + +                +DL +N+    IP+ V  L  L+ LN++ N L 
Sbjct: 452 --------VKV----------------LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

Query: 243 GDIP-SSLRNLTEVESLDLSSN 263
             +P      LT ++ + L  N
Sbjct: 487 -SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 28/150 (18%)

Query: 9   LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFN-GKIPRKFVKSCNL 65
           L  L L  N L N         NM+ L        + LD+ +N+ N     R    + ++
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSL--------ETLDVSLNSLNSHAYDRTCAWAESI 430

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             LNL+ N L G +   L     ++VL++ NN+I  + P  +  L  LQ L + SN+   
Sbjct: 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQL-- 485

Query: 126 PIGENTTIVP------FPSLRIIDLSHNEF 149
                   VP        SL+ I L  N +
Sbjct: 486 ------KSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 47/300 (15%), Positives = 97/300 (32%), Gaps = 38/300 (12%)

Query: 11  YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL 70
            +D SN  LT++    P     L+   N   ++                     L  L L
Sbjct: 35  MVDYSNRNLTHVPKDLPPRTKALSLSQNSISELR-----------MPDISFLSELRVLRL 83

Query: 71  NGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGE 129
           + NR+   L   + +    LE L+V +N++ +        +  L+ L L  N  +  +  
Sbjct: 84  SHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQNISCCP---MASLRHLDLSFND-FDVLPV 138

Query: 130 NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP---------- 179
                    L  + LS  +F  + L        + +  + +S  +               
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198

Query: 180 LNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHN 239
           L+   +  S+      + +     L +   I L+    Q  +  +         LN++  
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLS-NIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 240 NLTGDIPSSLRNL-----TEVESLDLSSNMLVGHIPT-----QLTSLKYLSVLNLSYNQF 289
           ++      S++         VE L++ +  +   I         T+LK L + ++    F
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 36/190 (18%), Positives = 70/190 (36%), Gaps = 34/190 (17%)

Query: 5   GIATLYYLDLSNNFLTNIEYFP---PTNMTQLNFDSN------------LTH-KVLDMRM 48
             A +    LS +    I       P++ T LNF  N            L   + L ++ 
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 49  NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNF 103
           N       +  + + N++SL      L   L     +        + VLN+ +N +  + 
Sbjct: 387 NGLK-NFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 104 PNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK 162
              L   P+++VL L +NR    P      +    +L+ ++++ N+   V   G  D   
Sbjct: 445 FRCL--PPKVKVLDLHNNRIMSIPKD----VTHLQALQELNVASNQLKSV-PDGVFDRLT 497

Query: 163 AMMH---GNN 169
           ++ +    +N
Sbjct: 498 SLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 33/121 (27%)

Query: 209 TIDLSSNKFQ---GGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML 265
            +D S+         +P     L+L      S N+++      +  L+E+  L LS N +
Sbjct: 35  MVDYSNRNLTHVPKDLPPRTKALSL------SQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 266 VGHIPT----QLTSLKYLSV------------------LNLSYNQFEGPIPRGSQFNTFP 303
              +          L+YL V                  L+LS+N F+  +P   +F    
Sbjct: 89  -RSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDV-LPVCKEFGNLT 146

Query: 304 N 304
            
Sbjct: 147 K 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 26/170 (15%), Positives = 61/170 (35%), Gaps = 22/170 (12%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           + +L Y+ L+N  +T++          +        K L +   +     P       NL
Sbjct: 43  MNSLTYITLANINVTDLTGI--EYAHNI--------KDLTINNIHATNYNP--ISGLSNL 90

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             L + G  +     P+L     L +L++ ++  +D+    +  LP++  + L  N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA-- 148

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS 171
            I +   +   P L+ +++  +          +++F  +         I 
Sbjct: 149 -ITDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            + +            +  L  L  L+ISH+     I + +  L +V S+DLS N  +  
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 269 IPTQLTSLKYLSVLNLSYNQ 288
           I   L +L  L  LN+ ++ 
Sbjct: 152 I-MPLKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            + +++          +  L+ L+ L I   ++T D   +L  LT +  LD+S +     
Sbjct: 70  DLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 269 IPTQLTSLKYLSVLNLSYNQ 288
           I T++ +L  ++ ++LSYN 
Sbjct: 128 ILTKINTLPKVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 37/203 (18%), Positives = 64/203 (31%), Gaps = 59/203 (29%)

Query: 64  NLTSLNLNGNR---LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
           +LT + L       L G     +   H+++ L + N    +  P  +  L  L+ L +  
Sbjct: 45  SLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL 180
                    N  +    SL ++D+SH+     +LT                        +
Sbjct: 98  KDVTSDKIPN--LSGLTSLTLLDISHSAHDDSILT-----------------------KI 132

Query: 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
           N+                     L    +IDLS N     I   +  L  LK LNI  + 
Sbjct: 133 NT---------------------LPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG 170

Query: 241 LTGDIPSSLRNLTEVESLDLSSN 263
           +  D    + +  ++  L   S 
Sbjct: 171 VH-DY-RGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC-NLTS 67
           L  LD+S++   +        + ++          +D+  N     I    +K+   L S
Sbjct: 114 LTLLDISHSAHDDSILTKINTLPKV--------NSIDLSYNGAITDI--MPLKTLPELKS 163

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
           LN+  + +       + +   L  L   +  I  
Sbjct: 164 LNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 55/289 (19%), Positives = 98/289 (33%), Gaps = 56/289 (19%)

Query: 3   DLGIATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVK 61
           D   A     +L    +T+        ++ Q+  +++    V  ++              
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP----------- 68

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
             N+T L LNGN+L    P  L N  +L  L +  N++ D     L+ L +L+ L L  N
Sbjct: 69  --NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN 122

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPL 180
                I +   +V  P L  + L +N+ T + +   L     + +  N IS         
Sbjct: 123 G----ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--------- 169

Query: 181 NSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEV--VGKLNLLKGLNISH 238
                           DI     LT    + LS N     I ++  +  L  L  L +  
Sbjct: 170 ----------------DIVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFS 209

Query: 239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
                   +   NL    ++  +   LV   P  ++        N+ ++
Sbjct: 210 QECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 54/169 (31%), Gaps = 39/169 (23%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L L NN +T+I              S LT                        L +L
Sbjct: 136 LESLYLGNNKITDITVL-----------SRLT-----------------------KLDTL 161

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF-WGPI 127
           +L  N++       L     L+ L +  N I+D     L  L  L VL L S      PI
Sbjct: 162 SLEDNQISD--IVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI 217

Query: 128 GENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDY 176
              + +V   +++  D S      +   G  +      H    + EV +
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 266

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 2e-10
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 21/138 (15%)

Query: 11  YLDLSNNFLTNIEYFPP-TNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
            L L++  LT + +      +T L+   N L               +P        L  L
Sbjct: 445 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-------------ALPPALAALRCLEVL 491

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI--LPELQVLILRSNRFWGP 126
             + N LE  +   + N   L+ L + NN++         +   P L +L L+ N     
Sbjct: 492 QASDNALEN-VDG-VANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQE 548

Query: 127 IGENTTIVP-FPSLRIID 143
            G    +    PS+  I 
Sbjct: 549 EGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 9e-10
 Identities = 46/267 (17%), Positives = 91/267 (34%), Gaps = 10/267 (3%)

Query: 26  PPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN 85
           P   +  ++         +        G      +   +   L++     +G   PS V 
Sbjct: 241 PHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 86  CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS 145
              L   ++ +      F          +  +L  +R      ++ T      L   +LS
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE---QLFRCELS 357

Query: 146 HNEFTGVLLTGYLDNFKAM--MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI 203
             + T  +L   L++ K +  +   N    +  +  + + +       T++         
Sbjct: 358 VEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415

Query: 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN 263
                 +D   +KF      +  +   ++ L+++H +LT  +   L  L  V  LDLS N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHN 473

Query: 264 MLVGHIPTQLTSLKYLSVLNLSYNQFE 290
            L   +P  L +L+ L VL  S N  E
Sbjct: 474 RLR-ALPPALAALRCLEVLQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 50/300 (16%), Positives = 96/300 (32%), Gaps = 37/300 (12%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
           + ++  DL    L +        +     DS     +L  R   +     R       L 
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW----CRDSATDEQLF 352

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
              L+  +    L   L +C  L+ L   N          + ++  L  L+         
Sbjct: 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKET---- 404

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYY 186
                 +  F +L+ +D     +   L + +L     +         +     L   +  
Sbjct: 405 ------LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH----LAHKD-- 452

Query: 187 ESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP 246
              +  +  ++      L +   +DLS N+ +  +P  +  L  L+ L  S N L  ++ 
Sbjct: 453 ---LTVLCHLEQ-----LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD 502

Query: 247 SSLRNLTEVESLDLSSNMLVGH-IPTQLTSLKYLSVLNLSYNQF-EGPIPRGSQFNTFPN 304
             + NL  ++ L L +N L        L S   L +LNL  N   +    +       P+
Sbjct: 503 G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.1 bits (137), Expect = 5e-09
 Identities = 32/239 (13%), Positives = 78/239 (32%), Gaps = 11/239 (4%)

Query: 56  PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQ 114
           P    +  ++   +L    L   LP            +      + D    W       +
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE 349

Query: 115 VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS--- 171
            L              + +     L+ ++   N++  + +   +     +++        
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 172 VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL 231
             +  + P+ ++   +     +    +       +   + L+       +   + +L L+
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR-VLHLAHKDLT--VLCHLEQLLLV 465

Query: 232 KGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
             L++SHN L   +P +L  L  +E L  S N L  ++   + +L  L  L L  N+ +
Sbjct: 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 50/325 (15%), Positives = 95/325 (29%), Gaps = 65/325 (20%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKF----- 59
            +     + L +  LT       ++   L  +  L    L++R N               
Sbjct: 26  LLQQCQVVRLDDCGLTEARCKDISSA--LRVNPALAE--LNLRSNELGDVGVHCVLQGLQ 81

Query: 60  VKSCNLTSLNLNGNRL--EG--PLPPSLVNCHHLEVLNVGNNQINDN-----FPNWLEIL 110
             SC +  L+L    L   G   L  +L     L+ L++ +N + D          L+  
Sbjct: 82  TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141

Query: 111 PELQVLILRSNRF----WGPIGENTTIVPFPSLRIIDLSHNEF--TGV-LLTGYLDNFKA 163
             L+ L L           P+     +   P  + + +S+N+    GV +L   L +   
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLAS--VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 164 -----MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ 218
                 +    ++ +               +   +                + L SNK  
Sbjct: 200 QLEALKLESCGVTSDN-----------CRDLCGIVAS--------KASLRELALGSNKLG 240

Query: 219 GG----IPEVVGKLNL-LKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNML---- 265
                 +   +   +  L+ L I    +T      +   LR    ++ L L+ N L    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 266 VGHIPTQLTS-LKYLSVLNLSYNQF 289
              +   L      L  L +    F
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 63/359 (17%), Positives = 111/359 (30%), Gaps = 80/359 (22%)

Query: 8   TLYYLDLSNNFLTN--IEYF------PPTNMTQLNFDSN-------------LTH----K 42
            L  L+L +N L +  +         P   + +L+  +              L      +
Sbjct: 57  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 43  VLDMRMNNFNGKIPRKFVK-----SCNLTSLNLNGNRL--EG--PLPPSLVNCHHLEVLN 93
            L +  N       +   +      C L  L L    L      PL   L      + L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 94  VGNNQINDNFPNWL-EILPE----LQVLILRSNRF----WGPIGENTTIVPFPSLRIIDL 144
           V NN IN+     L + L +    L+ L L S          +     +    SLR + L
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG--IVASKASLRELAL 234

Query: 145 SHNEFT--GV--LLTGYLDNFKA----MMHGNNISVE-VDYMTPLNSSNYYESII-LTIK 194
             N+    G+  L  G L          +    I+ +    +  +  +   ES+  L++ 
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK--ESLKELSLA 292

Query: 195 GIDIKMERILTIF----------MTIDLSSNKFQG----GIPEVVGKLNLLKGLNISHNN 240
           G ++  E    +            ++ + S  F          V+ +   L  L IS+N 
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

Query: 241 LTGD----IPSSLR-NLTEVESLDLSSNML----VGHIPTQLTSLKYLSVLNLSYNQFE 290
           L       +   L    + +  L L+   +       +   L +   L  L+LS N   
Sbjct: 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 47/289 (16%), Positives = 93/289 (32%), Gaps = 59/289 (20%)

Query: 37  SNLTHKVLDMRMNNFNGKIPRKFVKS-CNLTSLNLNGNRL--EG--PLPPSLVNCHHLEV 91
            ++    LD++    +     + +        + L+   L       +  +L     L  
Sbjct: 3   LDIQS--LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 92  LNVGNNQINDN-FPNWLEILPE----LQVLILRSNRF----WGPIGENTTIVPFPSLRII 142
           LN+ +N++ D      L+ L      +Q L L++        G +    T+   P+L+ +
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS--TLRTLPTLQEL 118

Query: 143 DLSHNEFT--GV--LLTGYLDNFKAMMH----GNNISVEVDYMTPLNSSNYYESIILTIK 194
            LS N     G+  L  G LD    +        ++S               E +   ++
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-----------SCEPLASVLR 167

Query: 195 GIDIKMERILTIFMTIDLSSNKFQG-GIPEVVGKLN----LLKGLNISHNNLTGD----I 245
                       F  + +S+N     G+  +   L      L+ L +    +T D    +
Sbjct: 168 A--------KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 246 PSSLRNLTEVESLDLSSNML----VGHI-PTQLTSLKYLSVLNLSYNQF 289
              + +   +  L L SN L    +  + P  L     L  L +     
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 41/257 (15%), Positives = 83/257 (32%), Gaps = 48/257 (18%)

Query: 62  SCNLTSLNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQIND----NFPNWLEILPELQVL 116
           S ++ SL++    L +      L      +V+ + +  + +    +  + L + P L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 117 ILRSNRFWGPIGENTTI-------VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169
            LRSN     +G+            P   ++ + L +   TG    G       +     
Sbjct: 62  NLRSNE----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA---GCGVLSSTLRTLPT 114

Query: 170 ISVEVDYMTPLN-SSNYYESIILTIKGIDI---KMERILTIFMTIDLSSNKF--QGG--I 221
           +         L+ S N      L   G+ +    +         + L            +
Sbjct: 115 LQE-------LHLSDNL-----LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162

Query: 222 PEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTE-VESLDLSSNML----VGHIPTQ 272
             V+      K L +S+N++       +   L++    +E+L L S  +       +   
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222

Query: 273 LTSLKYLSVLNLSYNQF 289
           + S   L  L L  N+ 
Sbjct: 223 VASKASLRELALGSNKL 239

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 43/237 (18%), Positives = 78/237 (32%), Gaps = 48/237 (20%)

Query: 42  KVLDMRMNNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPP----SLVNCHHLEVLNVGN 96
           K LD+  N     +    F     L  L+L+   ++  +      SL +   L  L +  
Sbjct: 31  KNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSH---LSTLILTG 85

Query: 97  NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI--VPF---PSLRIIDLSHNEFTG 151
           N I          L  LQ L+              ++   P     +L+ ++++HN    
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNL-------ASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 152 VLLTGYLDNFKAM----MHGNNI-SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTI 206
             L  Y  N   +    +  N I S+    +  L+         +              +
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ--------MP------------LL 178

Query: 207 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN 263
            +++DLS N      P    ++ L K L +  N L          LT ++ + L +N
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRL-KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 29/122 (23%), Positives = 41/122 (33%), Gaps = 19/122 (15%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  LDLS   +  IE     +++ L          L +  N         F    +L  L
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHL--------STLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 69  NLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQI-----NDNFPNWLEILPELQVLILRSNR 122
                 L   L      +   L+ LNV +N I      + F N    L  L+ L L SN+
Sbjct: 106 VAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----LTNLEHLDLSSNK 160

Query: 123 FW 124
             
Sbjct: 161 IQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 20/122 (16%)

Query: 8   TLYYLDLSNNFLTNIE---YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSC 63
           TL  L++++N + + +   YF  +N+T L        + LD+  N     I         
Sbjct: 125 TLKELNVAHNLIQSFKLPEYF--SNLTNL--------EHLDLSSNKIQ-SIYCTDLRVLH 173

Query: 64  NLT----SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
            +     SL+L+ N +   + P       L+ L +  NQ+        + L  LQ + L 
Sbjct: 174 QMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

Query: 120 SN 121
           +N
Sbjct: 233 TN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTS 67
           L  L L+ N + ++     + ++ L        + L     N    +          L  
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSL--------QKLVAVETNLA-SLENFPIGHLKTLKE 128

Query: 68  LNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR 119
           LN+  N +    LP    N  +LE L++ +N+I   +   L +L ++ +L L 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 209 TIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTG-DIPSSLRNLTEVESLDLSSNMLV 266
            +          +     G L  LK LN++HN +    +P    NLT +E LDLSSN + 
Sbjct: 104 KLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 267 GHIP----TQLTSLKYLSV-LNLSYNQFEGPIPRGS 297
             I       L  +  L++ L+LS N     I  G+
Sbjct: 163 -SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA 196

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 26/103 (25%)

Query: 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL-RNLTEVESLDLSSN---MLV 266
           DLS N  +            L+ L++S   +   I     ++L+ + +L L+ N    L 
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 267 GHIPTQLTSLKYLS---------------------VLNLSYNQ 288
               + L+SL+ L                       LN+++N 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 8e-09
 Identities = 52/358 (14%), Positives = 95/358 (26%), Gaps = 86/358 (24%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSN------------LTH-KVLDMRMNNFNGKIPRK 58
                + +T I    P N  +L F                   + +++  N+    I   
Sbjct: 14  FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73

Query: 59  -FVKSCNLTSLNL-NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116
            F     L  + +   N L    P +  N  +L+ L + N  I            +  +L
Sbjct: 74  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 117 ILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV---------LLTGYLDNFKAMMHG 167
            ++ N     I  N+ +       I+ L+ N    +         L    L         
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL------SDN 187

Query: 168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGK 227
           NN+                                         L ++ F G        
Sbjct: 188 NNLEE---------------------------------------LPNDVFHG-------- 200

Query: 228 LNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
            +    L+IS   +       L NL ++ +    +   +      L  L  L   +L+Y 
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLTYP 256

Query: 288 ----QFEGPIPRGSQFNTFPNDSYVGNSG-LCGFPLLESCNIDEAPEPVGSTRFDEEE 340
                F     + S+ +   N S +            +  ++ E  E   S  FD   
Sbjct: 257 SHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTY 314

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 26/170 (15%), Positives = 53/170 (31%), Gaps = 42/170 (24%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVK-S 62
            +  L YL +SN  + ++          ++   +L   +LD++ N     I R  FV  S
Sbjct: 102 NLPNLQYLLISNTGIKHLP--------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153

Query: 63  CNLTSLNLNGNRLEGPLPP-------------------------SLVNCHHLEVLNVGNN 97
                L LN N ++  +                                    +L++   
Sbjct: 154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212

Query: 98  QINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHN 147
           +I+      LE L +L+     + +          +    +L    L++ 
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNLKKLPT------LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 37/273 (13%), Positives = 74/273 (27%), Gaps = 49/273 (17%)

Query: 62  SCNLTSLNLNGNRLE---GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118
            C+        +++      LP +         L     ++            +L+ + +
Sbjct: 8   HCSNRVFLCQESKVTEIPSDLPRN------AIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 119 RSNRFWGPIGENTTIVPF---PSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNIS 171
             N     I  +     F   P L  I +        +      N   +    +    I 
Sbjct: 62  SQNDVLEVIEADV----FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 172 VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV--GKLN 229
                   L   +   S+   +                +D+  N     I      G   
Sbjct: 118 H-------LPDVHKIHSLQKVL----------------LDIQDNINIHTIERNSFVGLSF 154

Query: 230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQ 288
               L ++ N +  +I +S  N T+++ L+LS N  +  +P           +L++S  +
Sbjct: 155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 289 FEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLES 321
               +P                  L   P LE 
Sbjct: 214 IH-SLPSYG-LENLKKLRARSTYNLKKLPTLEK 244

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 52/343 (15%), Positives = 98/343 (28%), Gaps = 85/343 (24%)

Query: 4   LGIATLYYLDLSNNFLTN--IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPR 57
           +   ++    L  + +T    +         L  D ++    + +  N    +    +  
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSV----FAVLLEDDSVKE--IVLSGNTIGTEAARWLSE 54

Query: 58  KFVKSCNLTSLNLNGNRL-----EGP-----LPPSLVNCHHLEVLNVGNNQINDN----F 103
                 +L     +         E P     L  +L+ C  L  + + +N          
Sbjct: 55  NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 104 PNWLEILPELQVLILRSNRFWGPIG------------ENTTIVPFPSLRIIDLSHNEFT- 150
            ++L     L+ L L +N   GP               N      P LR I    N    
Sbjct: 115 IDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 151 --GVLLTGYLDNFKAM----MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL 204
                      + + +    M  N I  E                     GI+  +   L
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPE---------------------GIEHLLLEGL 212

Query: 205 ---TIFMTIDLSSNKF--QGG--IPEVVGKLNLLKGLNISHNNLTGD----IPSSLRNL- 252
                   +DL  N F   G   +   +     L+ L ++   L+      +  +   L 
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 253 -TEVESLDLSSNML----VGHIPTQL-TSLKYLSVLNLSYNQF 289
              +++L L  N +    V  + T +   +  L  L L+ N+F
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 40/194 (20%)

Query: 8   TLYYLDLSNNFLTN--IEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK-----IPRKFV 60
            L  +    N L N  ++ +             L    + M  N    +     +     
Sbjct: 160 PLRSIICGRNRLENGSMKEW----AKTFQSHRLLHT--VKMVQNGIRPEGIEHLLLEGLA 213

Query: 61  KSCNLTSLNLNGNRL--EG--PLPPSLVNCHHLEVLNVGNNQIND-----------NFPN 105
               L  L+L  N     G   L  +L +  +L  L + +  ++               N
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 106 WLEILPELQVLILRSNRFWGPIG----ENTTIVPFPSLRIIDLSHNEFT--GVLLTGYLD 159
                  LQ L L+ N           +       P L  ++L+ N F+    ++    +
Sbjct: 274 -----IGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327

Query: 160 NFKAMMHGNNISVE 173
            F     G    ++
Sbjct: 328 VFSTRGRGELDELD 341

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 47/244 (19%), Positives = 74/244 (30%), Gaps = 71/244 (29%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
             +   +N +   L   LPP L  +     +L++  N +       L     L  L L  
Sbjct: 9   VASHLEVNCDKRNLTA-LPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 121 NRFWGPIGENTTIVPF---PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYM 177
                     T +      P L  +DLSHN+                             
Sbjct: 65  AEL-------TKLQVDGTLPVLGTLDLSHNQLQ--------------------------- 90

Query: 178 TPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS 237
                     S+ L  +         L     +D+S N+        +  L  L+ L + 
Sbjct: 91  ----------SLPLLGQT--------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 238 HNNLTGDIPSSL-RNLTEVESLDLSSNMLVGHIP----TQLTSLKYLSVLNLSYNQFEGP 292
            N L   +P  L     ++E L L++N L   +P      L +L     L L  N     
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT---LLLQENSLYT- 186

Query: 293 IPRG 296
           IP+G
Sbjct: 187 IPKG 190

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 37/149 (24%), Positives = 53/149 (35%), Gaps = 23/149 (15%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
                L LS N L          +      + LT   LD        K+         L 
Sbjct: 31  KDTTILHLSENLLYTF---SLATLMPY---TRLTQLNLD---RAELTKLQ-VDGTLPVLG 80

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
           +L+L+ N+L+  LP        L VL+V  N++       L  L ELQ L L+ N     
Sbjct: 81  TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL--- 136

Query: 127 IGENTTI-----VPFPSLRIIDLSHNEFT 150
                T+      P P L  + L++N  T
Sbjct: 137 ----KTLPPGLLTPTPKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 47/232 (20%), Positives = 77/232 (33%), Gaps = 66/232 (28%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSN 121
           + T L+L+ N L      +L+    L  LN+   ++            LP L  L L  N
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LPVLGTLDLSHN 87

Query: 122 RFWGPIGENTTIVPF-----PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDY 176
           +           +P      P+L ++D+S N  T  L  G L                  
Sbjct: 88  QL--------QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG---------------- 122

Query: 177 MTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNI 236
                                      L     + L  N+ +   P ++     L+ L++
Sbjct: 123 ---------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155

Query: 237 SHNNLTGDIPSSL-RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
           ++NNLT ++P+ L   L  +++L L  N L   IP        L    L  N
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 46/261 (17%), Positives = 73/261 (27%), Gaps = 79/261 (30%)

Query: 12  LDLSNNFLTNIEYFP---PTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           ++     LT +   P   P + T L+   NL +                  +    LT L
Sbjct: 15  VNCDKRNLTAL---PPDLPKDTTILHLSENLLYTFS-----------LATLMPYTRLTQL 60

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG 128
           NL+   L             L  L++ +NQ+  + P   + LP L VL +  NR      
Sbjct: 61  NLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL----- 112

Query: 129 ENTTIVP--F---PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
             T++          L+ + L  NE    L  G L                         
Sbjct: 113 --TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP----------------------- 146

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLT 242
                                     + L++N     +P  +   L  L  L +  N+L 
Sbjct: 147 --------------------TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

Query: 243 GDIPSSLRNLTEVESLDLSSN 263
             IP        +    L  N
Sbjct: 186 T-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  L  LD+S N LT++   P   +  L     L    L ++ N      P     +  
Sbjct: 98  TLPALTVLDVSFNRLTSL---PLGALRGL---GELQE--LYLKGNELKTLPPGLLTPTPK 149

Query: 65  LTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
           L  L+L  N L   LP  L     +L+ L +  N +    P        L    L  N
Sbjct: 150 LEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 22/150 (14%)

Query: 11  YLDLSNNFLTNIEY-FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNLTSL 68
            LDLS+N L+ +   + PT +T L+         L +  N+ N  I  + FV   NL  L
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHS--------LLLSHNHLN-FISSEAFVPVPNLRYL 93

Query: 69  NLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQI----NDNFPNWLEILPELQVLILRSNRF 123
           +L+ N L   L      +   LEVL + NN I     + F +    + +LQ L L  N+ 
Sbjct: 94  DLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFED----MAQLQKLYLSQNQI 148

Query: 124 -WGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
              P+         P L ++DLS N+   +
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 9e-08
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 21/147 (14%)

Query: 9   LYYLDLSNNFLTNIEY--FPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
           L+ L LS+N L  I    F    +  L        + LD+  N+ +  +    F     L
Sbjct: 66  LHSLLLSHNHLNFISSEAF--VPVPNL--------RYLDLSSNHLH-TLDEFLFSDLQAL 114

Query: 66  TSLNLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQI----NDNFPNWLEILPELQVLILRS 120
             L L  N +   +   +  +   L+ L +  NQI     +   +    LP+L +L L S
Sbjct: 115 EVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSS 172

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHN 147
           N+       +   +P      + L +N
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSN 263
           +     +DLSSN        +   L  L+ L + +N++     ++  ++ +++ L LS N
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 264 MLVGHIPTQ----LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPN 304
            +    P +       L  L +L+LS N+ +  +P        P 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTD-LQKLPA 188

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 209 TIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTGDIPS-SLRNLTEVESLDLSSNMLV 266
            +DLS N       E    +L  L  L +SHN+L   I S +   +  +  LDLSSN L 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 267 GHIPTQ-LTSLKYLSVLNLSYNQFEGPIPRGS 297
             +     + L+ L VL L  N     + R +
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVV-VDRNA 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 44/234 (18%), Positives = 69/234 (29%), Gaps = 65/234 (27%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRS 120
            C    L+ +  +L   +P SL +  +  +L++ +N ++     W    L  L  L+L  
Sbjct: 17  LCASNILSCSKQQLPN-VPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH 73

Query: 121 NRFWGPIGENTTIVP--F---PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVD 175
           N           I    F   P+LR +DLS N     L      +               
Sbjct: 74  NHL-------NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSD--------------- 110

Query: 176 YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235
                                       L     + L +N            +  L+ L 
Sbjct: 111 ----------------------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142

Query: 236 ISHNNLTGDIP----SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS 285
           +S N ++   P         L ++  LDLSSN L     T L  L       L 
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 23/142 (16%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTS 67
              LDL    +  IE          N  + L     +D   N    K+   F     L +
Sbjct: 21  DRELDLRGYKIPVIE----------NLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKT 68

Query: 68  LNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGP 126
           L +N NR+             L  L + NN + +    + L  L  L  L +  N    P
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN----P 124

Query: 127 IGEN-----TTIVPFPSLRIID 143
           +          I   P +R++D
Sbjct: 125 VTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 22/145 (15%)

Query: 38  NLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97
            LT ++++      N               L+L G ++   +          + ++  +N
Sbjct: 3   KLTAELIEQAAQYTNA---------VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDN 52

Query: 98  QIN--DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT 155
           +I   D FP     L  L+ L++ +NR              P L  + L++N    +   
Sbjct: 53  EIRKLDGFPL----LRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLVELGDL 106

Query: 156 GYLDNFKAM----MHGNNISVEVDY 176
             L + K++    +  N ++ +  Y
Sbjct: 107 DPLASLKSLTYLCILRNPVTNKKHY 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 209 TIDLSSNKFQGGIPEVVG---KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML 265
            +DL   K    IP +      L+    ++ S N +   +      L  +++L +++N +
Sbjct: 23  ELDLRGYK----IPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRI 76

Query: 266 VGHIPTQLTSLKYLSVLNLSYNQFE 290
                    +L  L+ L L+ N   
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLV 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 49/334 (14%), Positives = 110/334 (32%), Gaps = 88/334 (26%)

Query: 8   TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV------- 60
           T  Y++  +    + + F   N+++L     L   +L++R        P K V       
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--------PAKNVLIDGVLG 160

Query: 61  --KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV--LNVGNNQINDNFPNWLEILPELQVL 116
             K+  +        +++  +          ++  LN+ N    +       +L  LQ L
Sbjct: 161 SGKTW-VALDVCLSYKVQCKMD--------FKIFWLNLKNCNSPE------TVLEMLQKL 205

Query: 117 ILRSNRFWGPIGENTTIVPFPS------LRIIDLSHNEFTGVLLTGYLDN------FKAM 164
           + + +  W    ++++ +          LR + L    +   LL   L N      + A 
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLV--LLNVQNAKAWNAF 262

Query: 165 MHG-------NNISVEVDYMTPLNSSNYYESIILTIKGI-DIKMERILTIFMTIDLSSNK 216
                         V  D+++   ++  + S+      +   +++ +L  ++        
Sbjct: 263 NLSCKILLTTRFKQV-TDFLSAATTT--HISLDHHSMTLTPDEVKSLLLKYLDCRPQD-- 317

Query: 217 FQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL 276
               +P  V   N  + L+I        I  S+R     + L    N         +   
Sbjct: 318 ----LPREVLTTNPRR-LSI--------IAESIR-----DGLATWDNWK------HVNCD 353

Query: 277 KYLSVLNLSYNQFEGPIPRG--SQFNTFPNDSYV 308
           K  +++  S N  E    R    + + FP  +++
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 55/334 (16%), Positives = 96/334 (28%), Gaps = 99/334 (29%)

Query: 8   TLYYLDLSNNFLTNIEYFP----PTNMTQLNFDSNLTHK-------VLDMRMNNFNGKIP 56
            L Y  +  N+ +  ++        +  Q      L  K       VL    N  N K  
Sbjct: 204 KLLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKAW 259

Query: 57  RKFVKSCN--LTSLNLN-GNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI---- 109
             F  SC   LT+      + L       +   HH   L    +++      +L+     
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQD 317

Query: 110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH--- 166
           LP                 E  T  P   L II  S  +          DN+K +     
Sbjct: 318 LPR----------------EVLTTNPR-RLSIIAESIRDGLATW-----DNWKHVNCDKL 355

Query: 167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG 226
              I   ++ + P      ++                L++F     S++     IP ++ 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDR---------------LSVFPP---SAH-----IPTIL- 391

Query: 227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESL-DLSSNMLVGHIP-------TQLTSLKY 278
                  L++   ++       + N     SL +         IP        +L +   
Sbjct: 392 -------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 279 L--SVLNLSYNQFEGPIPRGSQFNTF---PNDSY 307
           L  S+++  YN     IP+    +       D Y
Sbjct: 445 LHRSIVD-HYN-----IPKTFDSDDLIPPYLDQY 472

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 37/207 (17%), Positives = 79/207 (38%), Gaps = 39/207 (18%)

Query: 83  LVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRII 142
                +    N+G   + D      + L  +Q     ++     I     +  F +L+ +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN----IQSLAGMQFFTNLKEL 68

Query: 143 DLSHNEFTGVLLTGYLDNFKAM-MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME 201
            LSHN+ + +     L   + + ++ N +      +  + S+       L+         
Sbjct: 69  HLSHNQISDLSPLKDLTKLEELSVNRNRLKN----LNGIPSAC------LS--------- 109

Query: 202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLS 261
                   + L +N+ +    + +  L  L+ L+I +N L   I   L  L+++E LDL 
Sbjct: 110 -------RLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLH 158

Query: 262 SNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
            N +       LT LK ++ ++L+  +
Sbjct: 159 GNEITNTGG--LTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 17/114 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  L ++ N L N+   P   +++L  D+N                     +   NL  L
Sbjct: 87  LEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT-------------DSLIHLKNLEIL 133

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
           ++  N+L+      L     LEVL++  N+I +     L  L ++  + L   +
Sbjct: 134 SIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 32/167 (19%), Positives = 71/167 (42%), Gaps = 24/167 (14%)

Query: 7   ATLYYLDLSNNFLTNIEYFPP-TNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNL 65
           A     +L    +T++      + +   N D++    +  M+                NL
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFT-------------NL 65

Query: 66  TSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG 125
             L+L+ N++   L P L +   LE L+V  N++ +     +     L  L L +N    
Sbjct: 66  KELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNG--IPSAC-LSRLFLDNNE--- 117

Query: 126 PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS 171
            + +  +++   +L I+ + +N+   +++ G+L   + + +HGN I+
Sbjct: 118 -LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT 163

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 30/234 (12%), Positives = 71/234 (30%), Gaps = 54/234 (23%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNV-GNNQINDNFPNWLEILPELQVLILRSNR 122
           +  +L L    L      +  N  ++  + V  +  +     +    L ++  + +R+ R
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS 182
               I +   +   P L+ + + +           + +                      
Sbjct: 92  NLTYI-DPDALKELPLLKFLGIFNTGLKMFPDLTKVYS---------------------- 128

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVV--GKLNLLKGLNISHNN 240
                                  IF  ++++ N +   IP     G  N    L + +N 
Sbjct: 129 ---------------------TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 241 LTGDIPSSLRNLTEVESLDLSSNMLVGHIP----TQLTSLKYLSVLNLSYNQFE 290
            T  +     N T+++++ L+ N  +  I       + S    S+L++S     
Sbjct: 168 FT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG--PSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 13/150 (8%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRK-FVKSCNL 65
            +   L L    L  I     +N+  +          + + ++    ++    F     +
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNI--------SRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 66  TSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPN--WLEILPELQVLILRSNR 122
           T + +   R    + P  L     L+ L + N  +   FP+   +       +L +  N 
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNP 141

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
           +   I  N           + L +N FT V
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 36/151 (23%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
             +L LS N +  I      +++ +    NL  ++L +  N    KI      +  L  L
Sbjct: 50  CKHLALSTNNIEKIS-----SLSGM---ENL--RILSLGRNLIK-KIENLDAVADTLEEL 98

Query: 69  NLNGNR---LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI-----LPELQVLILRS 120
            ++ N+   L G     +    +L VL + NN+I +    W EI     L +L+ L+L  
Sbjct: 99  WISYNQIASLSG-----IEKLVNLRVLYMSNNKITN----WGEIDKLAALDKLEDLLLAG 149

Query: 121 NRFWGPIGENTT--------IVPFPSLRIID 143
           N  +    EN          +   P+L+ +D
Sbjct: 150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 19/138 (13%)

Query: 64  NLTSLNLNGNR---LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
               L L+ N    +       L    +L +L++G N I     N   +   L+ L +  
Sbjct: 49  ACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISY 102

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVDY 176
           N+    I   + I    +LR++ +S+N+ T       L     +    + GN +    DY
Sbjct: 103 NQ----IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY--NDY 156

Query: 177 MTPLNSSNYYESIILTIK 194
                +S Y   ++  + 
Sbjct: 157 KENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 190 ILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL 249
           I  I  +       +     + L  N  +  I  +    + L+ L IS+N +   + S +
Sbjct: 60  IEKISSLSG-----MENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL-SGI 111

Query: 250 RNLTEVESLDLSSNML--VGHIPTQLTSLKYLSVLNLSYNQF 289
             L  +  L +S+N +   G I  +L +L  L  L L+ N  
Sbjct: 112 EKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 18/92 (19%)

Query: 65  LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN--DNFPNWLEILPELQVLILRSNR 122
              L+     +E  +  +L      + L +  N I    +    L  +  L++L L  N 
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS----LSGMENLRILSLGRNL 81

Query: 123 FWGPIGENTTIVPF----PSLRIIDLSHNEFT 150
                     I        +L  + +S+N+  
Sbjct: 82  I-------KKIENLDAVADTLEELWISYNQIA 106

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 39/253 (15%), Positives = 78/253 (30%), Gaps = 38/253 (15%)

Query: 57  RKFVKSC-NLTSLNLNGNRL--EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEIL--- 110
               KS  N   L L+         L      C +L+ L++  + ++D   +WL      
Sbjct: 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182

Query: 111 -PELQVLILR------SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKA 163
              L  L +       S      +         P+L+ + L+      V L         
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTR-----CPNLKSLKLNRA----VPLE---KLATL 230

Query: 164 MMHGNNI-SVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIP 222
           +     +  +     T     + Y  + + + G   K  R L+ F     +       +P
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG--CKELRCLSGFWDAVPA------YLP 282

Query: 223 EVVGKLNLLKGLNISHNNLTGD-IPSSLRNLTEVESLDLSSNML---VGHIPTQLTSLKY 278
            V    + L  LN+S+  +    +   L    +++ L +   +    +  + +    L+ 
Sbjct: 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342

Query: 279 LSVLNLSYNQFEG 291
           L V        E 
Sbjct: 343 LRVFPSEPFVMEP 355

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 34/268 (12%), Positives = 80/268 (29%), Gaps = 36/268 (13%)

Query: 44  LDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEGPLPPSLVN---------------CH 87
             + + N     P   ++    + S+ L G                              
Sbjct: 46  RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105

Query: 88  HLEVLNVGNNQINDNFPNWL-EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH 146
            LE + +    + D+    + +     +VL+L S   +   G         +L+ +DL  
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165

Query: 147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTI 206
           ++   V       ++ +       S+       LN S     +  +   +  ++      
Sbjct: 166 SDVDDV-----SGHWLSHFPDTYTSLVS-----LNISCLASEV--SFSAL-ERLVTRCPN 212

Query: 207 FMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD------IPSSLRNLTEVESLDL 260
             ++ L+       +  ++ +   L+ L                +  +L    E+  L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 261 SSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
             + +  ++P   +    L+ LNLSY  
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYAT 300

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 23/140 (16%)

Query: 11  YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH-KVLDMRMNNFNGKIPRKFVKSCNLTSLN 69
            LD   +    IE             +   + + L + +N     +     K   L  L 
Sbjct: 30  VLDNCKSNDGKIE----------GLTAEFVNLEFLSL-INVGLISVSN-LPKLPKLKKLE 77

Query: 70  LNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIG 128
           L+ NR+ G L        +L  LN+  N++ D +    L+ L  L+ L L +      + 
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVT 133

Query: 129 E-----NTTIVPFPSLRIID 143
                  +     P L  +D
Sbjct: 134 NLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 63  CNLTSLNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILR 119
             +  L L+  +  +G +        +LE L++ N  +    N P     LP+L+ L L 
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK----LPKLKKLELS 79

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVD 175
            NR +G  G +      P+L  ++LS N+   +     L   + +    +    ++   D
Sbjct: 80  ENRIFG--GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 176 Y 176
           Y
Sbjct: 138 Y 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            +D   +   G I  +  +   L+ L++ +  L   + S+L  L +++ L+LS N + G 
Sbjct: 30  VLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGG 86

Query: 269 IPTQLTSLKYLSVLNLSYNQFE 290
           +      L  L+ LNLS N+ +
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 209 TIDLSSNKFQ--GGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML- 265
            + L +        +P    KL  LK L +S N + G +      L  +  L+LS N L 
Sbjct: 53  FLSLINVGLISVSNLP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 266 -VGHIPTQLTSLKYLSVLNLSYN 287
            +  +   L  L+ L  L+L   
Sbjct: 109 DISTL-EPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 30/141 (21%), Positives = 43/141 (30%), Gaps = 44/141 (31%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L +L   N  LT+I   P                                  K   L  L
Sbjct: 44  LEFLSTINVGLTSIANLP----------------------------------KLNKLKKL 69

Query: 69  NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPI 127
            L+ NR+ G L      C +L  LN+  N+I D +    L+ L  L+ L L +      +
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC----EV 125

Query: 128 GEN-----TTIVPFPSLRIID 143
                         P L  +D
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 63  CNLTSLNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQIND--NFPNWLEILPELQVLILR 119
            ++  L L+ +R  EG L         LE L+  N  +    N P     L +L+ L L 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK----LNKLKKLELS 72

Query: 120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM----MHGNNISVEVD 175
            NR  G  G        P+L  ++LS N+   +     L   + +    +    ++   D
Sbjct: 73  DNRVSG--GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 176 Y 176
           Y
Sbjct: 131 Y 131

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            +D S +  +G +  +  +   L+ L+  +  LT  I ++L  L +++ L+LS N + G 
Sbjct: 23  VLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79

Query: 269 IPTQLTSLKYLSVLNLSYNQFE 290
           +         L+ LNLS N+ +
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 204 LTIFMTIDLSSNKFQ--GGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLS 261
                 +   +        +P    KLN LK L +S N ++G +         +  L+LS
Sbjct: 41  FEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 262 SNML--VGHIPTQLTSLKYLSVLNLSYN 287
            N +  +  I   L  L+ L  L+L   
Sbjct: 97  GNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 47/303 (15%), Positives = 104/303 (34%), Gaps = 70/303 (23%)

Query: 33  LNFDSNLTHKVLDMRMNNFNGKIPRKFVK-----SCNLTSLNLNGNRL--EG--PLPPSL 83
            +    +T   LD+ +NN       + ++       ++TSLNL+GN L  +    L   L
Sbjct: 18  TSIPHGVTS--LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 84  -VNCHHLEVLNVGNNQINDNFPNWL-EILPE----LQVLILRSNRFWGPIGENTTIV--- 134
                ++  LN+  N ++    + L + L      + VL L  N         ++     
Sbjct: 76  AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND----FSSKSSSEFKQ 131

Query: 135 ----PFPSLRIIDLSHNEFT---GVLLTGYLDNFKAM-----MHGNNISVEVDYMTPLNS 182
                  S+  ++L  N+        L   L    A      + GNN++ +         
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN-------- 183

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ-GGIPEVVGKL----NLLKGLNIS 237
                 +   +  I   +        ++DLS+N        E+        N +  LN+ 
Sbjct: 184 ---CAELAKFLASIPASVT-------SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 238 HNNLTGD----IPSSLRNLTEVESLDLSSNML-------VGHIPTQLTSLKYLSVLNLSY 286
            N L G     +     +L  ++++ L  +++          +     +++ + +++ + 
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 287 NQF 289
            + 
Sbjct: 294 KEI 296

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 33/231 (14%)

Query: 64  NLTSLNLNGNRL--EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE----LQVLI 117
           +L +L L+         L   + +C  ++ L +  +  ++    WL  L +    L+VL 
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198

Query: 118 LRSNRFWGPIGEN--TTIVPF-PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEV 174
                F   I      TI     SL  + +   E   + L G+      +      S+  
Sbjct: 199 FYMTEFAK-ISPKDLETIARNCRSLVSVKVGDFEI--LELVGFFKAAANLEEFCGGSLNE 255

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234
           D   P    N      L   G+                 S      +P +      ++ L
Sbjct: 256 DIGMPEKYMNLVFPRKLCRLGL-----------------SYMGPNEMPILFPFAAQIRKL 298

Query: 235 NISHNNLTGD-IPSSLRNLTEVESLDLS---SNMLVGHIPTQLTSLKYLSV 281
           ++ +  L  +   + ++    +E L+      +  +  +      LK L +
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSL 68
           L  +DLSNN ++ +    P     L    +L    L +  N         F    +L  L
Sbjct: 58  LRRIDLSNNQISEL---APDAFQGL---RSLNS--LVLYGNKITELPKSLFEGLFSLQLL 109

Query: 69  NLNGNRLEGPLPP-SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
            LN N++   L   +  + H+L +L++ +N++          L  +Q + L  N
Sbjct: 110 LLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            I L  N  +   P        L+ +++S+N ++   P + + L  + SL L  N +   
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-E 94

Query: 269 IPT----QLTSLKYLSVLNLSYNQFEGPIPRG 296
           +P      L SL+ L    L+ N+    +   
Sbjct: 95  LPKSLFEGLFSLQLLL---LNANKINC-LRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 28/147 (19%)

Query: 27  PTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRK-FVKSCNLTSLNLNGNRLEGPLPP--- 81
           P  +T++  + N +               IP   F     L  ++L+ N++   L P   
Sbjct: 31  PETITEIRLEQNTIK-------------VIPPGAFSPYKKLRRIDLSNNQISE-LAPDAF 76

Query: 82  -SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG-PIGENTTIVPFPSL 139
             L +   L  L +  N+I +   +  E L  LQ+L+L +N+     +          +L
Sbjct: 77  QGLRS---LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNL 130

Query: 140 RIIDLSHNEFTGVLLTGYLDNFKAMMH 166
            ++ L  N+   +   G     +A+  
Sbjct: 131 NLLSLYDNKLQTI-AKGTFSPLRAIQT 156

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 9/106 (8%)

Query: 221 IPEVVGKLNLLKGLNISHNNLTGDIPS-SLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKY 278
               +     L  L I +      +    LR L E+ +L +  + L   +          
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 279 LSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNI 324
           LS LNLS+N  E  +       T    S      L G PL  SC +
Sbjct: 82  LSRLNLSFNALES-LSWK----TVQGLSLQ-ELVLSGNPLHCSCAL 121

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 204 LTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSS 262
                 + + + +    +    +  L  L+ L I  + L    P +      +  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 263 NMLVGHIPTQLTSLKYLSVLNLSYNQF 289
           N L   +  +      L  L LS N  
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 12/111 (10%)

Query: 14  LSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNG 72
             +  L ++ + P           NLT   L +        +  + ++    L +L +  
Sbjct: 16  TRDGALDSLHHLPGA--------ENLTE--LYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 73  NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           + L    P +      L  LN+  N +       ++ L  LQ L+L  N  
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 233 GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQ-LTSLKYLSVLNLSYNQFEG 291
           GL  + +    D    L     +  L + +   + H+  + L  L  L  L +  +    
Sbjct: 12  GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR- 69

Query: 292 PIPRGSQFNTFPN 304
            +   + F+  P 
Sbjct: 70  FVAPDA-FHFTPR 81

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 19/131 (14%)

Query: 60  VKSCNLTSLNLNGNRLEGPLPPSLVNCH-----HLEVLNVGNNQINDNFPNWL------E 108
               NL SL +    L   +   ++         L +     +   D   N        +
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249

Query: 109 ILPELQVLILRSNRFWGPIGENTTIVPF-PSLRIIDLSHNEFTGVLLTGYLDNFKAM--- 164
             P L+ L +        + E        P L  +D+S    T       LD+   +   
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 165 ----MHGNNIS 171
               M  N +S
Sbjct: 310 KFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 226 GKLNLLKGLNISHNNLTGDIPSSL---RNLTEVESLDLSSNML----VGHIPTQLTSLKY 278
            +   LK L I        +         L ++E++D+S+ +L       +   +  +K+
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 279 LSVLNLSYNQF 289
           L  +N+ YN  
Sbjct: 309 LKFINMKYNYL 319

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL-RNLTEVESLDLSSNMLV--- 266
           DL SNK      +   +L  L+ L ++ N L   +P+ + + L  +E+L ++ N L    
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 267 GHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
             +  QL +L  L    L  NQ +  +P  
Sbjct: 102 IGVFDQLVNLAEL---RLDRNQLKS-LPPR 127

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 50/226 (22%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           +   L+L  N+L      +      L +L + +N++        + L  L+ L +  N+ 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK- 96

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNI-SVEVDYMTPLNS 182
                            +  L    F  ++    L      +  N + S+       L  
Sbjct: 97  -----------------LQALPIGVFDQLVNLAELR-----LDRNQLKSLPPRVFDSLTK 134

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE-VVGKLNLLKGLNISHNNL 241
                                LT    + L  N+ Q  +P+ V  KL  LK L + +N L
Sbjct: 135 ---------------------LT---YLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL 169

Query: 242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN 287
                 +   LTE+++L L +N L         SL+ L +L L  N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 41/164 (25%)

Query: 5   GI-ATLYYLDLSNNFLTNIEY--FPP-TNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRK- 58
            I A    LDL +N L+++    F   T +  L  + N L               +P   
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-------------TLPAGI 80

Query: 59  FVKSCNLTSLNLNGNRLEGPLPP----SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ 114
           F +  NL +L +  N+L+  LP      LVN   L  L +  NQ+    P   + L +L 
Sbjct: 81  FKELKNLETLWVTDNKLQA-LPIGVFDQLVN---LAELRLDRNQLKSLPPRVFDSLTKLT 136

Query: 115 VLILRSNRFWGPIGENTTIVP---F---PSLRIIDLSHNEFTGV 152
            L L  N            +P   F    SL+ + L +N+   V
Sbjct: 137 YLSLGYNEL--------QSLPKGVFDKLTSLKELRLYNNQLKRV 172

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 58/270 (21%), Positives = 88/270 (32%), Gaps = 85/270 (31%)

Query: 8   TLYYLDLSNNFLTNIEYFP---PTNMTQLNFDSN-LTHKVLDMRMNNFNGKIPRK-FVKS 62
               +D S+  LT I   P   P +  +L+  SN L+              +P K F + 
Sbjct: 17  NKNSVDCSSKKLTAI---PSNIPADTKKLDLQSNKLS-------------SLPSKAFHRL 60

Query: 63  CNLTSLNLNGNRLEGPLPP----SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL 118
             L  L LN N+L+  LP      L N   LE L V +N++        + L  L  L L
Sbjct: 61  TKLRLLYLNDNKLQT-LPAGIFKELKN---LETLWVTDNKLQALPIGVFDQLVNLAELRL 116

Query: 119 RSNRFWGPIGENTTIVP--F---PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVE 173
             N+         ++ P  F     L  + L +NE    L  G  D              
Sbjct: 117 DRNQL-------KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDK------------- 155

Query: 174 VDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG 233
                                         LT    + L +N+ +        KL  LK 
Sbjct: 156 ------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKT 185

Query: 234 LNISHNNLTGDIPSSLRNLTEVESLDLSSN 263
           L + +N L      +  +L +++ L L  N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 209 TIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267
            + L++N+F       +  KL  L+ +N S+N +T     +    + V  + L+SN L  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 268 HIPT----QLTSLKYLSVLNLSYNQFEGPIPRGS 297
            +       L SLK L    L  N+    +   S
Sbjct: 96  -VQHKMFKGLESLKTLM---LRSNRITC-VGNDS 124

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 54/153 (35%)

Query: 5   GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCN 64
            +  L  ++ SNN +T+IE                                   F  +  
Sbjct: 55  KLPQLRKINFSNNKITDIE--------------------------------EGAFEGASG 82

Query: 65  LTSLNLNGNRLEGPLPPSL-VNCHHLEVLNVGNNQI----NDNFPNWLEILPELQVLILR 119
           +  + L  NRLE  +   +      L+ L + +N+I    ND+F      L  +++L L 
Sbjct: 83  VNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIG----LSSVRLLSLY 137

Query: 120 SNRFWGPIGENTTIVP-----FPSLRIIDLSHN 147
            N+        TT+ P       SL  ++L  N
Sbjct: 138 DNQI-------TTVAPGAFDTLHSLSTLNLLAN 163

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 5   GIATLYYLDLSNNFLTNIEYFP-PTNMTQLNFDSN----------LTH-KVLDMRMNNFN 52
            + ++  +  +N+ + +++      N+  L    N          LT+   L +  N   
Sbjct: 39  ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ 98

Query: 53  GKIPRKFVKSCNLTSLNLNGNRLEGPLPP----SLVNCHHLEVLNVGNNQINDNFPNWLE 108
                 F K  NL  L L  N+L+  LP      L N   L  LN+ +NQ+        +
Sbjct: 99  SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTN---LTYLNLAHNQLQSLPKGVFD 154

Query: 109 ILPELQVLILRSN 121
            L  L  L L  N
Sbjct: 155 KLTNLTELDLSYN 167

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 15/93 (16%)

Query: 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT---GDIPSSLRNLTEVESLDLSSNMLVG 267
            L  N+     P V   L  LK L +  N L      +  SL  LT    LDL +N L  
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV---LDLGTNQLTV 102

Query: 268 HIPT----QLTSLKYLSVLNLSYNQFEGPIPRG 296
            +P+    +L  LK    L +  N+    +PRG
Sbjct: 103 -LPSAVFDRLVHLKE---LFMCCNKLTE-LPRG 130

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 211 DLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML----V 266
           DL S             L  L  LN+ +N L         +LTE+ +L L++N L    +
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 267 GHIPTQLTSLKYLSVLNLSYNQFEGPIPRG 296
           G +   LT L     L L  NQ +  +P G
Sbjct: 101 G-VFDHLTQLDK---LYLGGNQLKS-LPSG 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.98
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.98
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.84
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.6
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.2
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.12
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.7e-42  Score=353.07  Aligned_cols=322  Identities=31%  Similarity=0.489  Sum_probs=203.1

Q ss_pred             CCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEE
Q 015663            6 IATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~   69 (403)
                      +++|++|++++|.+++..|   ..+++|+.|++++|             ++|++|++++|.+++.+|..++.+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            3444555555555444443   33444555555554             4455555555555555555555555555555


Q ss_pred             ccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcc
Q 015663           70 LNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (403)
Q Consensus        70 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  149 (403)
                      +++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+  +.+++|+.|++++|.+
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEE
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCcc
Confidence            55555555555555555555555555555555555555555555555555555555555443  5555555555555555


Q ss_pred             ccccchhhhhhhhhhcccCCCc-cccccc------------------CCCC--------CCCcceEEEEEEeccchhhhh
Q 015663          150 TGVLLTGYLDNFKAMMHGNNIS-VEVDYM------------------TPLN--------SSNYYESIILTIKGIDIKMER  202 (403)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~~~-~~~~~~------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~  202 (403)
                      ++.+|..++.. ..+....... .....+                  ....        .............+..+..+.
T Consensus       551 ~g~ip~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          551 NGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             ESBCCGGGGTT-TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             CCcCChHHhcc-cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            55555442221 1111100000 000000                  0000        000000000011122223344


Q ss_pred             hcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 015663          203 ILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  282 (403)
Q Consensus       203 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  282 (403)
                      .++.|+.||+++|+++|.+|..++.++.|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+++|++|
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 015663          283 NLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPV  331 (403)
Q Consensus       283 ~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~C~~~~~~~~~  331 (403)
                      |+++|+++|.||...++.++...++.||+++||.|.. .|.......+.
T Consensus       710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~  757 (768)
T 3rgz_A          710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYA  757 (768)
T ss_dssp             ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-----
T ss_pred             ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCC
Confidence            9999999999999999999999999999999999976 88776554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.3e-38  Score=288.02  Aligned_cols=259  Identities=28%  Similarity=0.449  Sum_probs=227.0

Q ss_pred             CCccEEECCCCCCCC--cCCCCCCCCCeEeCCCCCCCCEEECcC-CcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663            7 ATLYYLDLSNNFLTN--IEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~--~~~~~~~~L~~L~l~~n~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~   83 (403)
                      .+++.|+|++|.+++  ..|..+.+++.|        ++|++++ |.+.+.+|..|+++++|++|++++|++++.+|..|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L--------~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  121 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYL--------NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTC--------SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCC--------CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH
Confidence            578899999999988  666666666555        8889985 88888889999999999999999999988888889


Q ss_pred             cCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCC-CccEEEccCCccccccchhhhhhhh
Q 015663           84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGVLLTGYLDNFK  162 (403)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~  162 (403)
                      .++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+  ..++ +|++|++++|.+++..+..+.    
T Consensus       122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~~----  195 (313)
T 1ogq_A          122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTFA----  195 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGGG----
T ss_pred             hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHHh----
Confidence            999999999999999988888889999999999999999987888765  7777 899999999988876654421    


Q ss_pred             hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC
Q 015663          163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (403)
Q Consensus       163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  242 (403)
                                                              .+. |+.|++++|.+++..|..+..+++|+.|++++|.++
T Consensus       196 ----------------------------------------~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          196 ----------------------------------------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ----------------------------------------GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             ----------------------------------------CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence                                                    134 899999999999999999999999999999999999


Q ss_pred             CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Q 015663          243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESC  322 (403)
Q Consensus       243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~C  322 (403)
                      +.+|. +..+++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+|+.+||.|.. .|
T Consensus       235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            76665 88899999999999999999999999999999999999999999999888888999999999999998875 46

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6e-35  Score=299.57  Aligned_cols=304  Identities=25%  Similarity=0.353  Sum_probs=178.8

Q ss_pred             CCCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCC-------------C-CCCEEECcCCcCcccCCccccC--CCC
Q 015663            5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-------------L-THKVLDMRMNNFNGKIPRKFVK--SCN   64 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-------------~-~L~~L~Ls~n~l~~~~p~~~~~--l~~   64 (403)
                      ++++|++|++++|.+++.+|    ..+++|+.|++++|             + +|++|++++|.+++.+|..+..  +++
T Consensus       316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  395 (768)
T 3rgz_A          316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT  395 (768)
T ss_dssp             GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred             cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence            34566666666666654444    44555666666655             1 5555555555555544444443  444


Q ss_pred             cCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEc
Q 015663           65 LTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDL  144 (403)
Q Consensus        65 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  144 (403)
                      |++|++++|++++.+|..|.++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+  ..+++|++|++
T Consensus       396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L  473 (768)
T 3rgz_A          396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLIL  473 (768)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEEC
T ss_pred             ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEe
Confidence            5555555555554455555555555555555555544444445555555555555555544444433  44444555555


Q ss_pred             cCCccccccchhhhhhhhhhcccCCCcccccccCC--CCCCCcceEEEEE---EeccchhhhhhcccceEEEcccCcccc
Q 015663          145 SHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILT---IKGIDIKMERILTIFMTIDLSSNKFQG  219 (403)
Q Consensus       145 ~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~  219 (403)
                      ++|.+++..|.. +.+++.|+.++..........+  ......+..+...   +.+..+.....+++|+.|++++|.++|
T Consensus       474 ~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          474 DFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             cCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            555544444433 3333333333322211110000  0000111111111   111223334456777777777777776


Q ss_pred             cCCc----------------------------------------------------------------------ccCCCC
Q 015663          220 GIPE----------------------------------------------------------------------VVGKLN  229 (403)
Q Consensus       220 ~~p~----------------------------------------------------------------------~~~~l~  229 (403)
                      .+|.                                                                      .++.++
T Consensus       553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~  632 (768)
T 3rgz_A          553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG  632 (768)
T ss_dssp             BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred             cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence            6654                                                                      344567


Q ss_pred             CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCC-CCCCCCCCcCC
Q 015663          230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS-QFNTFPNDSYV  308 (403)
Q Consensus       230 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~-~~~~~~~~~~~  308 (403)
                      +|+.|+|++|+++|.+|..++++++|+.|+|++|++++.+|..++++++|+.|||++|+++|.+|... .+..+..+++.
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            89999999999999999999999999999999999999999999999999999999999999999863 34455556666


Q ss_pred             CCC
Q 015663          309 GNS  311 (403)
Q Consensus       309 gn~  311 (403)
                      +|.
T Consensus       713 ~N~  715 (768)
T 3rgz_A          713 NNN  715 (768)
T ss_dssp             SSE
T ss_pred             CCc
Confidence            664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-34  Score=279.07  Aligned_cols=311  Identities=20%  Similarity=0.176  Sum_probs=232.1

Q ss_pred             CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC--------------CCCCEEECcCCcCcccCCccccCCCCcCEEE
Q 015663            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLN   69 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n--------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~   69 (403)
                      ++|++|+|++|.++++.|   ..+++|+.|++++|              ++|++|++++|.+++..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            579999999999999876   67788999999887              6899999999999988899999999999999


Q ss_pred             ccCCcCcCCCCcc--ccCCCCCCEEEccCCcCCcCCChh-ccCCCCCcEEEcccccccCcCCCCCCc-------------
Q 015663           70 LNGNRLEGPLPPS--LVNCHHLEVLNVGNNQINDNFPNW-LEILPELQVLILRSNRFWGPIGENTTI-------------  133 (403)
Q Consensus        70 L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------  133 (403)
                      +++|++++..|..  |.++++|++|++++|.+++..|.. +..+++|++|++++|++++..+..+.-             
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            9999998755554  888999999999999999877765 788999999999999987776654411             


Q ss_pred             -------------------cCCCCccEEEccCCccccccchhhhhhh--hhhcccCCCcccc-------cccCCCC----
Q 015663          134 -------------------VPFPSLRIIDLSHNEFTGVLLTGYLDNF--KAMMHGNNISVEV-------DYMTPLN----  181 (403)
Q Consensus       134 -------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~~~~~~~~~-------~~~~~~~----  181 (403)
                                         ..+++|++|++++|.+++..+..+...+  ..++.+.......       ..+....    
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                               1235677777777777765554432211  2222222111000       0000000    


Q ss_pred             ---CCCcceEEEEEE---eccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCC
Q 015663          182 ---SSNYYESIILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEV  255 (403)
Q Consensus       182 ---~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  255 (403)
                         ....+..+....   ....+..+..+++|+.|++++|.+++..|..+..+++|++|+|++|.+++..|..+..+++|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence               001122222222   22234455668899999999999998889999999999999999999987778899999999


Q ss_pred             CEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCCCC
Q 015663          256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP  317 (403)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~~~  317 (403)
                      ++|++++|++++..|..+..+++|++|++++|++++..+.. ..+..+..+.+.+|+..|..|
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999999999888999999999999999999999644433 345566777777877776544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4e-34  Score=296.34  Aligned_cols=266  Identities=20%  Similarity=0.220  Sum_probs=162.2

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  119 (403)
                      +|+.|++++|.+.+..|..|..+++|+.|++++|++++..|..|.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            56666777776666666666777777777777777776666667777777777777777766666667777777777777


Q ss_pred             cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCC-------------------
Q 015663          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL-------------------  180 (403)
Q Consensus       120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~-------------------  180 (403)
                      +|.+.+..+..+  ..+++|++|++++|.+++...   ..+++.+...   ......+...                   
T Consensus       347 ~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~---~N~l~~l~~~~~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          347 KNHIAIIQDQTF--KFLEKLQTLDLRDNALTTIHF---IPSIPDIFLS---GNKLVTLPKINLTANLIHLSENRLENLDI  418 (844)
T ss_dssp             SCCCCCCCSSCS--CSCCCCCEEEEETCCSCCCSS---CCSCSEEEEE---SCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred             CCCCCccChhhh--cCCCCCCEEECCCCCCCcccC---CCCcchhccC---CCCcccccccccccceeecccCccccCch
Confidence            777655444433  666777777777776664322   1112111111   1000000000                   


Q ss_pred             ----CCCCcceEEEEEEeccc----hhhhhhcccceEEEcccCccc-----ccCCcccCCCCCCCEEEecCCCCCCCcCc
Q 015663          181 ----NSSNYYESIILTIKGID----IKMERILTIFMTIDLSSNKFQ-----GGIPEVVGKLNLLKGLNISHNNLTGDIPS  247 (403)
Q Consensus       181 ----~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  247 (403)
                          .....+..+....+.+.    ...+..+++|+.|++++|.++     +..+..+..+++|+.|+|++|++++..|.
T Consensus       419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  498 (844)
T 3j0a_A          419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG  498 (844)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred             hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence                00111222222222221    111222455566666666554     23345566777788888888888777777


Q ss_pred             cccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 015663          248 SLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFP  317 (403)
Q Consensus       248 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~  317 (403)
                      .+.++++|+.|+|++|++++..+..+.  ++|+.|++++|++++.+|..  +..+..+.+.|||+.|.++
T Consensus       499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          499 VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred             HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence            778888888888888888866666555  77888888888888777754  4466777788999888543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.5e-33  Score=269.30  Aligned_cols=308  Identities=19%  Similarity=0.162  Sum_probs=218.5

Q ss_pred             CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEc
Q 015663            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L   70 (403)
                      ++++.|+|++|.++++.+   ..+++|+.|+|++|             ++|++|++++|.+++..+..|.++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            478999999999998876   56788999999988             68999999999999766677899999999999


Q ss_pred             cCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc
Q 015663           71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (403)
Q Consensus        71 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  150 (403)
                      ++|++++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..+..+  ..+++|+.|++++|.+.
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEEEESCCCC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEeCCCCcCc
Confidence            9999998888889999999999999999999888889999999999999999876544433  78899999999999988


Q ss_pred             cccchhhhhhhhhhcccCCCcccc-cccCC-CCCCCcceEEEEEE---eccchhhhhhcccceEEEcccCcccccCCccc
Q 015663          151 GVLLTGYLDNFKAMMHGNNISVEV-DYMTP-LNSSNYYESIILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVV  225 (403)
Q Consensus       151 ~~~~~~~~~~l~~L~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~  225 (403)
                      +..+.. +..++.|+.+....... ..+.. ......+..+....   ..++...+..+++|+.|++++|.+++..+..+
T Consensus       190 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          190 AIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             EECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred             EeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence            765533 45555555544322110 00000 00001222233222   22333344556777777777777777677777


Q ss_pred             CCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCC
Q 015663          226 GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPND  305 (403)
Q Consensus       226 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~  305 (403)
                      ..+++|++|+|++|++++..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+....+......
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~  348 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRL  348 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSS
T ss_pred             cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhcc
Confidence            77777777777777777666777777777777777777777666666777777777777777776543221111112223


Q ss_pred             cCCCCCCCCCCC
Q 015663          306 SYVGNSGLCGFP  317 (403)
Q Consensus       306 ~~~gn~~lc~~~  317 (403)
                      .+.++...|..|
T Consensus       349 ~~~~~~~~C~~p  360 (477)
T 2id5_A          349 NFNRQQPTCATP  360 (477)
T ss_dssp             CCTTCCCBEEES
T ss_pred             ccCccCceeCCc
Confidence            445555566544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-32  Score=263.73  Aligned_cols=304  Identities=17%  Similarity=0.126  Sum_probs=243.5

Q ss_pred             ccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcC
Q 015663            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL   75 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l   75 (403)
                      -+.++.+++.++.++.....+++.|+|++|             ++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            357899999999887766789999999998             7899999999999988899999999999999999999


Q ss_pred             cCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccch
Q 015663           76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT  155 (403)
Q Consensus        76 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  155 (403)
                      ++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++..+.
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS--TTCTTCCEEEEESCCCSSCCHH
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc--cCCCCCCEEECCCCcCcccChh
Confidence            96666678999999999999999999889999999999999999999987777665  8899999999999999876543


Q ss_pred             hhhhhhhhhcccCCCcccccccCC--CCCCCcceEEEEEEec----cchhhhhhcccceEEEcccCcccccCCcccCCCC
Q 015663          156 GYLDNFKAMMHGNNISVEVDYMTP--LNSSNYYESIILTIKG----IDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN  229 (403)
Q Consensus       156 ~~~~~l~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  229 (403)
                       .+..++.|+.+.........+..  ......+..+......    +...... ..+|+.|++++|.+++..+..+..++
T Consensus       171 -~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~  248 (477)
T 2id5_A          171 -ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLV  248 (477)
T ss_dssp             -HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred             -HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCcc
Confidence             35666666666553333222211  1112223333333221    1112222 34899999999999965557889999


Q ss_pred             CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC-CCCCCCCCCcCC
Q 015663          230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYV  308 (403)
Q Consensus       230 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~  308 (403)
                      +|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+.. ..+..+..+.+.
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred             ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence            9999999999999877888999999999999999999989999999999999999999999544332 234566777788


Q ss_pred             CCCCCCCC
Q 015663          309 GNSGLCGF  316 (403)
Q Consensus       309 gn~~lc~~  316 (403)
                      +|++.|.+
T Consensus       329 ~N~l~c~c  336 (477)
T 2id5_A          329 SNPLACDC  336 (477)
T ss_dssp             SSCEECSG
T ss_pred             CCCccCcc
Confidence            88887753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.2e-32  Score=274.60  Aligned_cols=302  Identities=19%  Similarity=0.186  Sum_probs=226.0

Q ss_pred             CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC---------------------CCCCEEECcCCcCcccCCc--c
Q 015663            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPR--K   58 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n---------------------~~L~~L~Ls~n~l~~~~p~--~   58 (403)
                      ++++|++|+|++|.+.+..|   ..+++|+.|++++|                     ++|++|++++|.++ .+|.  .
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            58899999999999999888   56788999999988                     47899999999998 8888  8


Q ss_pred             ccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCC-CcEEEcccccccCcCCCCCCccCCC
Q 015663           59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPFP  137 (403)
Q Consensus        59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~  137 (403)
                      |+++++|++|++++|+++|.+| .|.++++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+....++
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~  402 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS  402 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence            9999999999999999998888 8888889999999999888 47888888888 999999988886 667655222344


Q ss_pred             CccEEEccCCccccccchhhhh------hhhhhcccCCCcccccccCCC--CCCCcceEEEEEEe---ccchhhhhh---
Q 015663          138 SLRIIDLSHNEFTGVLLTGYLD------NFKAMMHGNNISVEVDYMTPL--NSSNYYESIILTIK---GIDIKMERI---  203 (403)
Q Consensus       138 ~L~~L~l~~n~l~~~~~~~~~~------~l~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~---  203 (403)
                      +|++|++++|.+++..|..+..      .+..|+.+.........++..  .....+..+....+   .++...+..   
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~  482 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE  482 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence            7888888888888766544220      233444433322222211110  00111222222221   222222221   


Q ss_pred             ----cccceEEEcccCcccccCCcccC--CCCCCCEEEecCCCCCCCcCccccCCCCCCEEec------cCCcCCCCCCc
Q 015663          204 ----LTIFMTIDLSSNKFQGGIPEVVG--KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDL------SSNMLVGHIPT  271 (403)
Q Consensus       204 ----~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L------s~n~l~~~~p~  271 (403)
                          +++|+.|++++|+++ .+|..+.  .+++|++|+|++|++++ +|..+..+++|+.|++      ++|++.+.+|.
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence                238999999999999 7887776  89999999999999996 8888999999999999      56778888999


Q ss_pred             cccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCC
Q 015663          272 QLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLC  314 (403)
Q Consensus       272 ~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc  314 (403)
                      .+..+++|+.|++++|++ +.+|.... ..+..+.+.+|+..|
T Consensus       561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          561 GITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS  601 (636)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred             HHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence            999999999999999999 68888743 677777788887766

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.98  E-value=3.7e-31  Score=255.77  Aligned_cols=272  Identities=21%  Similarity=0.231  Sum_probs=220.0

Q ss_pred             CCCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCcc--ccCCCCc
Q 015663            5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRK--FVKSCNL   65 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~--~~~l~~L   65 (403)
                      ++++|++|++++|.+.+.++    ..+++|+.|++++|             ++|++|++++|.+++..|..  |..+++|
T Consensus        52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  131 (455)
T 3v47_A           52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL  131 (455)
T ss_dssp             SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred             cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence            67899999999999875543    56789999999998             78999999999998766555  8899999


Q ss_pred             CEEEccCCcCcCCCCcc-ccCCCCCCEEEccCCcCCcCCChhccCC----------------------------------
Q 015663           66 TSLNLNGNRLEGPLPPS-LVNCHHLEVLNVGNNQINDNFPNWLEIL----------------------------------  110 (403)
Q Consensus        66 ~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l----------------------------------  110 (403)
                      ++|++++|++++..|.. |.++++|++|++++|.+++..|..+..+                                  
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  211 (455)
T 3v47_A          132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN  211 (455)
T ss_dssp             CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred             CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence            99999999999777776 8899999999999999988777665443                                  


Q ss_pred             CCCcEEEcccccccCcCCCCC-----------------------------------Ccc--CCCCccEEEccCCcccccc
Q 015663          111 PELQVLILRSNRFWGPIGENT-----------------------------------TIV--PFPSLRIIDLSHNEFTGVL  153 (403)
Q Consensus       111 ~~L~~L~l~~n~l~~~~~~~~-----------------------------------~~~--~l~~L~~L~l~~n~l~~~~  153 (403)
                      ++|++|++++|++++..+..+                                   .+.  ..++|++|++++|.+++..
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            678888888887754322110                                   011  2368999999999999876


Q ss_pred             chhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCE
Q 015663          154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG  233 (403)
Q Consensus       154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  233 (403)
                      +.. +..++.|+.++......                   ....+..+..+++|+.|++++|.+++..|..+..+++|++
T Consensus       292 ~~~-~~~l~~L~~L~Ls~n~l-------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          292 KSV-FSHFTDLEQLTLAQNEI-------------------NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             TTT-TTTCTTCCEEECTTSCC-------------------CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             hhh-cccCCCCCEEECCCCcc-------------------cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence            654 55666666655422221                   1222334455889999999999999888999999999999


Q ss_pred             EEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663          234 LNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG  296 (403)
Q Consensus       234 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~  296 (403)
                      |+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             EECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            999999999888999999999999999999999877778899999999999999999988854

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.98  E-value=1.1e-31  Score=268.65  Aligned_cols=286  Identities=21%  Similarity=0.198  Sum_probs=217.0

Q ss_pred             CccEEECCCCCCCCcCC---CCCCCCCeEeCCCC------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663            8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~   72 (403)
                      +|+.|++++|.++++++   ..+++|+.|++++|            ++|++|++++|.+++..|..+..+++|++|++++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            78899999999998887   45677778877777            5778888888888776777777888888888888


Q ss_pred             CcCcCCCCcc-ccCCCCCCEEEccCCcCCcCC--ChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcc
Q 015663           73 NRLEGPLPPS-LVNCHHLEVLNVGNNQINDNF--PNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEF  149 (403)
Q Consensus        73 n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  149 (403)
                      |.+.+.+|.. +.++++|++|++++|.+++..  |..+..+++|++|++++|++.+..+..+  ..+++|++|++++|.+
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT--TTCTTCSEEECTTCCE
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh--cCCccCCeEECCCCcC
Confidence            8777655543 777888888888888877654  6677778888888888887776666655  6777888888888887


Q ss_pred             ccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccccc---CCcccC
Q 015663          150 TGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG---IPEVVG  226 (403)
Q Consensus       150 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~p~~~~  226 (403)
                      ++..+...+..++.|+.+......                   +....+..+..+++|+.|++++|.+++.   .+..+.
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~-------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  473 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSL-------------------LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ  473 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCC-------------------CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred             CCcccchhhhCcccCCEEECCCCc-------------------cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence            766555545555555555442221                   1122233344578999999999999863   336688


Q ss_pred             CCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC-CCCCCCCCC
Q 015663          227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPND  305 (403)
Q Consensus       227 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~~~~  305 (403)
                      .+++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..++.| .|++++|++++.+|.. ..+..+..+
T Consensus       474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L  552 (606)
T 3t6q_A          474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI  552 (606)
T ss_dssp             GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred             cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence            99999999999999998888999999999999999999999999999999999 9999999999766653 223455666


Q ss_pred             cCCCCCCCCC
Q 015663          306 SYVGNSGLCG  315 (403)
Q Consensus       306 ~~~gn~~lc~  315 (403)
                      .+.+|++.|.
T Consensus       553 ~l~~N~~~c~  562 (606)
T 3t6q_A          553 NLRQNPLDCT  562 (606)
T ss_dssp             ECTTCCEECS
T ss_pred             eCCCCCcccc
Confidence            6777766663

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=1e-32  Score=253.34  Aligned_cols=230  Identities=26%  Similarity=0.364  Sum_probs=207.9

Q ss_pred             CCCCccEEECCC-CCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663            5 GIATLYYLDLSN-NFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (403)
Q Consensus         5 ~~~~L~~L~Ls~-n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~   83 (403)
                      ++++|++|++++ |.+.+..|..+.+++.|        ++|++++|.+++.+|..|.++++|++|++++|.+++.+|..|
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L--------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  145 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQL--------HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTC--------SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             CCCCCCeeeCCCCCcccccCChhHhcCCCC--------CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence            578999999995 99998888766666655        999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEEccCCcCCcCCChhccCCC-CCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhh
Q 015663           84 VNCHHLEVLNVGNNQINDNFPNWLEILP-ELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK  162 (403)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  162 (403)
                      .++++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+  ..++ |++|++++|.+++..+..+     
T Consensus       146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~--~~l~-L~~L~Ls~N~l~~~~~~~~-----  217 (313)
T 1ogq_A          146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSRNMLEGDASVLF-----  217 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCSSEEEECCGGGC-----
T ss_pred             hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--hCCc-ccEEECcCCcccCcCCHHH-----
Confidence            9999999999999999988999999998 99999999999998888866  6676 9999999999987655431     


Q ss_pred             hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC
Q 015663          163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (403)
Q Consensus       163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  242 (403)
                                                             ..+++|+.|++++|.+++.+|. +..+++|++|++++|+++
T Consensus       218 ---------------------------------------~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          218 ---------------------------------------GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             ---------------------------------------CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred             ---------------------------------------hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence                                                   1267899999999999977766 788999999999999999


Q ss_pred             CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCc-Ccc
Q 015663          243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ-FEG  291 (403)
Q Consensus       243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~  291 (403)
                      +.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+ +.|
T Consensus       258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            999999999999999999999999999986 889999999999998 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=2.5e-31  Score=266.24  Aligned_cols=116  Identities=22%  Similarity=0.214  Sum_probs=85.2

Q ss_pred             hhhhcccceEEEcccCcccc-cCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663          200 MERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  278 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  278 (403)
                      .+..+++|+.|++++|.+++ .+|..+..+++|++|++++|++++..|..+.++++|+.|++++|++++.+|..+..+++
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence            34456777777887777776 36777788888888888888888777777888888888888888888777888888888


Q ss_pred             CCEEeCcCCcCccCCCCCC-CCC-CCCCCcCCCCCCCCCC
Q 015663          279 LSVLNLSYNQFEGPIPRGS-QFN-TFPNDSYVGNSGLCGF  316 (403)
Q Consensus       279 L~~L~L~~N~l~~~ip~~~-~~~-~~~~~~~~gn~~lc~~  316 (403)
                      |+.|++++|+++ .+|... .+. .+..+.+.+|++.|++
T Consensus       523 L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          523 LSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             CCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             CCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence            888888888887 566542 222 3555566677666643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=9.3e-31  Score=265.53  Aligned_cols=265  Identities=20%  Similarity=0.174  Sum_probs=206.6

Q ss_pred             CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-----------------CCCCEEECcCCcCcccCCccccCCCC
Q 015663            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFVKSCN   64 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-----------------~~L~~L~Ls~n~l~~~~p~~~~~l~~   64 (403)
                      .+++|++|++++|.++++.+   ..+++|+.|++++|                 ++|+.|++++|.+++..|.+|..+++
T Consensus       327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            46778888888888888776   45677888888876                 37888888888888777888888888


Q ss_pred             cCEEEccCCcCcCCCC-ccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc--CcCCCCCCccCCCCccE
Q 015663           65 LTSLNLNGNRLEGPLP-PSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW--GPIGENTTIVPFPSLRI  141 (403)
Q Consensus        65 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~~l~~L~~  141 (403)
                      |++|++++|.+++.+| ..|.++++|++|++++|++.+..+..+..+++|+.|++++|.+.  +.+|..+  ..+++|+.
T Consensus       407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~  484 (680)
T 1ziw_A          407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTI  484 (680)
T ss_dssp             CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCE
T ss_pred             CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCE
Confidence            8888888888876555 57888888888888888888877778888888888888888775  3455554  77888888


Q ss_pred             EEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccC
Q 015663          142 IDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGI  221 (403)
Q Consensus       142 L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  221 (403)
                      |++++|.+++..+..                                            +..+++|+.|++++|.+++..
T Consensus       485 L~Ls~N~l~~i~~~~--------------------------------------------~~~l~~L~~L~Ls~N~l~~~~  520 (680)
T 1ziw_A          485 LDLSNNNIANINDDM--------------------------------------------LEGLEKLEILDLQHNNLARLW  520 (680)
T ss_dssp             EECCSSCCCCCCTTT--------------------------------------------TTTCTTCCEEECCSSCCGGGG
T ss_pred             EECCCCCCCcCChhh--------------------------------------------hccccccCEEeCCCCCccccc
Confidence            888888887654432                                            122678899999999988542


Q ss_pred             --------CcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCC
Q 015663          222 --------PEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPI  293 (403)
Q Consensus       222 --------p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i  293 (403)
                              +..+..+++|+.|+|++|+++...+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++++..
T Consensus       521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence                    234788899999999999998544457889999999999999999777777889999999999999998665


Q ss_pred             CCCC--CCCCCCCCcCCCCCCCCC
Q 015663          294 PRGS--QFNTFPNDSYVGNSGLCG  315 (403)
Q Consensus       294 p~~~--~~~~~~~~~~~gn~~lc~  315 (403)
                      |...  .+..+....+.+||+.|+
T Consensus       601 ~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          601 KKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             HHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             hhHhcccccccCEEEccCCCcccC
Confidence            5432  345566667777777774

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=5.3e-31  Score=249.61  Aligned_cols=295  Identities=20%  Similarity=0.180  Sum_probs=194.4

Q ss_pred             CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L   68 (403)
                      .+++++.|++++|.++.+++   ..+++|+.|++++|             ++|++|++++|.+++..|..|+++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            45788888888888887766   34566666666665             466777777777776666667777777777


Q ss_pred             EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015663           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (403)
Q Consensus        69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  148 (403)
                      ++++|+++...+..|.++++|++|++++|.+++..|..+..+++|++|++++|++++. +    +..+++|+.|++++|.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D----LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C----GGGCTTCSEEECCSSC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c----cccccccceeeccccc
Confidence            7777777733333356677777777777777766666677777777777777766442 1    2455666666666666


Q ss_pred             cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccc-hhhhhhcccceEEEcccCcccccCCcccCC
Q 015663          149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVGK  227 (403)
Q Consensus       149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  227 (403)
                      +++....   .+++.|   .........+.. .....+..+....+.+. ......+++|+.|++++|.+++..|..+..
T Consensus       198 l~~~~~~---~~L~~L---~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          198 LSTLAIP---IAVEEL---DASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             CSEEECC---SSCSEE---ECCSSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ccccCCC---CcceEE---ECCCCeeeeccc-cccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence            5543211   112211   111111111100 00011122222211111 123455889999999999999888999999


Q ss_pred             CCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcC
Q 015663          228 LNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSY  307 (403)
Q Consensus       228 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~  307 (403)
                      +++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++. +| ...+..+..+.+
T Consensus       271 l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l  346 (390)
T 3o6n_A          271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTL  346 (390)
T ss_dssp             CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEEC
T ss_pred             cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEc
Confidence            999999999999998 46777788999999999999998 567778889999999999999984 44 234556667777


Q ss_pred             CCCCCCCC
Q 015663          308 VGNSGLCG  315 (403)
Q Consensus       308 ~gn~~lc~  315 (403)
                      .+|++-|.
T Consensus       347 ~~N~~~~~  354 (390)
T 3o6n_A          347 SHNDWDCN  354 (390)
T ss_dssp             CSSCEEHH
T ss_pred             CCCCccch
Confidence            77777663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=1.2e-30  Score=262.48  Aligned_cols=113  Identities=21%  Similarity=0.303  Sum_probs=94.7

Q ss_pred             hcccceEEEcccCcc-cccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663          203 ILTIFMTIDLSSNKF-QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV  281 (403)
Q Consensus       203 ~~~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  281 (403)
                      .++.++.|++++|.+ .+..|..+..+++|++|+|++|++++..|..|+++++|+.|+|++|++++..|..|..+++|+.
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred             cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence            355677888888874 3457788999999999999999999888999999999999999999999888999999999999


Q ss_pred             EeCcCCcCccCCCCCCC-C-CCCCCCcCCCCCCCCC
Q 015663          282 LNLSYNQFEGPIPRGSQ-F-NTFPNDSYVGNSGLCG  315 (403)
Q Consensus       282 L~L~~N~l~~~ip~~~~-~-~~~~~~~~~gn~~lc~  315 (403)
                      ||+++|++++..|.... + ..+..+.+.+||+.|.
T Consensus       547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            99999999988777542 2 3566667777777663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=7e-31  Score=272.07  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=92.5

Q ss_pred             hcccceEEEcccCcccccCCc-ccCCCCCCCEEEecCCCCC-----CCcCccccCCCCCCEEeccCCcCCCCCCccccCC
Q 015663          203 ILTIFMTIDLSSNKFQGGIPE-VVGKLNLLKGLNISHNNLT-----GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL  276 (403)
Q Consensus       203 ~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  276 (403)
                      .+++|+.|++++|++++..+. .+..+++|+.|++++|.++     +..+..+.++++|+.|+|++|++++..|..+..+
T Consensus       424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  503 (844)
T 3j0a_A          424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL  503 (844)
T ss_dssp             TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred             cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence            477888888888888855443 3556788999999999886     3445678889999999999999999999999999


Q ss_pred             CCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCC---------------CCCCCCCCCCCCCC
Q 015663          277 KYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS---------------GLCGFPLLESCNID  325 (403)
Q Consensus       277 ~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~---------------~lc~~~~~~~C~~~  325 (403)
                      ++|+.|+|++|++++..|.... ..+..+++.+|.               .+.++|+.|+|...
T Consensus       504 ~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          504 TALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             CSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCC
T ss_pred             hhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccH
Confidence            9999999999999965444332 344433333332               23468899999764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.5e-30  Score=235.49  Aligned_cols=245  Identities=21%  Similarity=0.254  Sum_probs=158.2

Q ss_pred             CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~   87 (403)
                      +++.++++++.++.++....+++           ++|++++|.+++..+..|+++++|++|++++|++++..|..|.+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l-----------~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDT-----------ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV  100 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTC-----------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CCeEEEecCCCccccCccCCCCC-----------eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence            67888888888877654333444           4555555555544444555555555555555555544455555555


Q ss_pred             CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccc--ccchhhhhhhhhhc
Q 015663           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG--VLLTGYLDNFKAMM  165 (403)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~  165 (403)
                      +|++|++++|.++. +|..+.  ++|++|++++|.+++..+..+  ..+++|++|++++|.+..  ..+ ..+..++.|+
T Consensus       101 ~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~  174 (330)
T 1xku_A          101 KLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLS  174 (330)
T ss_dssp             TCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCC
T ss_pred             CCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHh--cCCccccEEECCCCcCCccCcCh-hhccCCCCcC
Confidence            55555555555554 333322  455555555555543333222  455555555555555542  111 1233333333


Q ss_pred             ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc
Q 015663          166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI  245 (403)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  245 (403)
                      .+.........+.                   .   ...++|+.|++++|.+++..|..+..+++|++|++++|.+++..
T Consensus       175 ~L~l~~n~l~~l~-------------------~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  232 (330)
T 1xku_A          175 YIRIADTNITTIP-------------------Q---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD  232 (330)
T ss_dssp             EEECCSSCCCSCC-------------------S---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred             EEECCCCccccCC-------------------c---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence            3332111111000                   0   01367999999999999888999999999999999999999777


Q ss_pred             CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015663          246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP  292 (403)
Q Consensus       246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  292 (403)
                      +..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus       233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence            778999999999999999999 7888899999999999999999854

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=3.3e-30  Score=255.06  Aligned_cols=125  Identities=23%  Similarity=0.201  Sum_probs=98.3

Q ss_pred             CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEc
Q 015663            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L   70 (403)
                      ++|++|++++|.++++.|   ..+++|+.|++++|             ++|++|++++|.+++..|..|+++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            578899999999888866   56778888888887             67888888888888777777888888888888


Q ss_pred             cCCcCcC-CCCccccCCCCCCEEEccCCc-CCcCCChhccCCCCCcEEEcccccccCcCCCCC
Q 015663           71 NGNRLEG-PLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENT  131 (403)
Q Consensus        71 ~~n~l~~-~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~  131 (403)
                      ++|++++ ..|..|+++++|++|++++|. +....+..+..+++|++|++++|.+++..|..+
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            8888875 356678888888888888887 444334577888888888888888877666544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=257.80  Aligned_cols=116  Identities=22%  Similarity=0.256  Sum_probs=88.9

Q ss_pred             hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC-CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT-GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  278 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  278 (403)
                      .+..+++|+.|++++|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            3445777888888888888778888888888888888888886 467888888888888888888888777888888888


Q ss_pred             CCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCC
Q 015663          279 LSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCG  315 (403)
Q Consensus       279 L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~  315 (403)
                      |+.|++++|++++..|.. ..+..+..+.+.+|+..|.
T Consensus       496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            888888888888665543 2344555566666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=3.2e-30  Score=264.02  Aligned_cols=299  Identities=18%  Similarity=0.179  Sum_probs=214.1

Q ss_pred             CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCCC----------------------CCCEEECcCCcCcccCCc--
Q 015663            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSNL----------------------THKVLDMRMNNFNGKIPR--   57 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n~----------------------~L~~L~Ls~n~l~~~~p~--   57 (403)
                      ++++|++|+|++|.+.+..|   ..+++|+.|++++|.                      +|+.|++++|.++ .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            68999999999999998888   678899999999995                      8999999999999 8888  


Q ss_pred             cccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCC-CcEEEcccccccCcCCCCCCccCC
Q 015663           58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPE-LQVLILRSNRFWGPIGENTTIVPF  136 (403)
Q Consensus        58 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l  136 (403)
                      .|+++++|+.|++++|+++ .+| .|.++++|+.|++++|.++ .+|..+..+++ |+.|++++|+++ .+|..+.....
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~  643 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV  643 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence            8999999999999999999 888 8999999999999999999 58888999998 999999999987 67765522223


Q ss_pred             CCccEEEccCCccccccchhh--hh--hhhhhcccCCCcccccccCCCC--CCCcceEEEEEE---eccchhhhh-----
Q 015663          137 PSLRIIDLSHNEFTGVLLTGY--LD--NFKAMMHGNNISVEVDYMTPLN--SSNYYESIILTI---KGIDIKMER-----  202 (403)
Q Consensus       137 ~~L~~L~l~~n~l~~~~~~~~--~~--~l~~L~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~-----  202 (403)
                      ++|+.|++++|.+++..+.-.  ..  .+..|+.+.........++...  ....+..+.++.   ..++...+.     
T Consensus       644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~  723 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN  723 (876)
T ss_dssp             SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred             CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence            458888888888877544211  11  1113333332221111111000  001112222211   122222222     


Q ss_pred             --hcccceEEEcccCcccccCCcccC--CCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccC------CcCCCCCCcc
Q 015663          203 --ILTIFMTIDLSSNKFQGGIPEVVG--KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSS------NMLVGHIPTQ  272 (403)
Q Consensus       203 --~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~------n~l~~~~p~~  272 (403)
                        .+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..
T Consensus       724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG  801 (876)
T ss_dssp             CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred             ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence              1237888888888888 6777776  78888888888888875 677778888888888865      6677778888


Q ss_pred             ccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCC
Q 015663          273 LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG  312 (403)
Q Consensus       273 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~  312 (403)
                      +..+++|+.|+|++|++ +.+|.... ..+..+.+.+|+.
T Consensus       802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~l  839 (876)
T 4ecn_A          802 ITTCPSLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNPN  839 (876)
T ss_dssp             GGGCSSCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCTT
T ss_pred             HhcCCCCCEEECCCCCC-CccCHhhc-CCCCEEECCCCCC
Confidence            88888888888888888 57777632 4556666666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.3e-30  Score=260.16  Aligned_cols=295  Identities=20%  Similarity=0.170  Sum_probs=194.2

Q ss_pred             CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L   68 (403)
                      .+++++.+++++|.++.+++   ..+++|+.|+|++|             ++|++|+|++|.+++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            45677888888888877766   34566666666655             456777777777776666666777777777


Q ss_pred             EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015663           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (403)
Q Consensus        69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  148 (403)
                      ++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..     +..+++|+.|++++|.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCc
Confidence            77777777444444566777777777777777666666677777777777777665431     2455666666666666


Q ss_pred             cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccc-hhhhhhcccceEEEcccCcccccCCcccCC
Q 015663          149 FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID-IKMERILTIFMTIDLSSNKFQGGIPEVVGK  227 (403)
Q Consensus       149 l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~  227 (403)
                      +++....   .++..|   .........+.... ...+..+.+..+.+. ......+++|+.|++++|.+++..|..++.
T Consensus       204 l~~l~~~---~~L~~L---~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~  276 (597)
T 3oja_B          204 LSTLAIP---IAVEEL---DASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK  276 (597)
T ss_dssp             CSEEECC---TTCSEE---ECCSSCCCEEECSC-CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             cccccCC---chhhee---eccCCccccccccc-CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence            6543211   112221   11111111110000 011222222222211 233455889999999999999988999999


Q ss_pred             CCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcC
Q 015663          228 LNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSY  307 (403)
Q Consensus       228 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~  307 (403)
                      +++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++. |. ..+..+..+.+
T Consensus       277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~~~L~~L~l  352 (597)
T 3oja_B          277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-KL-STHHTLKNLTL  352 (597)
T ss_dssp             CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-CC-CTTCCCSEEEC
T ss_pred             ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-Ch-hhcCCCCEEEe
Confidence            9999999999999984 6777788999999999999998 6777788899999999999999854 42 24556666777


Q ss_pred             CCCCCCCC
Q 015663          308 VGNSGLCG  315 (403)
Q Consensus       308 ~gn~~lc~  315 (403)
                      .+|++-|.
T Consensus       353 ~~N~~~~~  360 (597)
T 3oja_B          353 SHNDWDCN  360 (597)
T ss_dssp             CSSCEEHH
T ss_pred             eCCCCCCh
Confidence            77776663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=3.3e-31  Score=266.09  Aligned_cols=299  Identities=18%  Similarity=0.198  Sum_probs=204.4

Q ss_pred             CCCCccEEECCCCCCCCc-----------------CC---C--CCCCCCeEeCCCC-------------CCCCEEECcCC
Q 015663            5 GIATLYYLDLSNNFLTNI-----------------EY---F--PPTNMTQLNFDSN-------------LTHKVLDMRMN   49 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~-----------------~~---~--~~~~L~~L~l~~n-------------~~L~~L~Ls~n   49 (403)
                      ++++|++|+|++|.+++.                 +|   .  .+++|+.|++++|             ++|++|++++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            578999999999999993                 44   4  6778888888777             57888888888


Q ss_pred             c-Ccc-cCCccccCC------CCcCEEEccCCcCcCCCCc--cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663           50 N-FNG-KIPRKFVKS------CNLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (403)
Q Consensus        50 ~-l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  119 (403)
                      . +++ .+|..++.+      ++|++|++++|+++ .+|.  .|+++++|++|++++|.+++.+| .+..+++|++|+++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~  361 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA  361 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence            7 777 777777765      78888888888888 7777  78888888888888888876677 77777888888888


Q ss_pred             cccccCcCCCCCCccCCCC-ccEEEccCCccccccchhhh-hhhhhhcccCCCcccccccCC--CC-------CCCcceE
Q 015663          120 SNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGVLLTGYL-DNFKAMMHGNNISVEVDYMTP--LN-------SSNYYES  188 (403)
Q Consensus       120 ~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~-~~l~~L~~~~~~~~~~~~~~~--~~-------~~~~~~~  188 (403)
                      +|+++ .+|..+  ..+++ |++|++++|.++. .|..+. ..++.|+.+...........+  ..       ....+..
T Consensus       362 ~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          362 YNQIT-EIPANF--CGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             SSEEE-ECCTTS--EEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             CCccc-cccHhh--hhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            88876 566655  77777 8888888888873 333211 112244444332222211100  00       1112222


Q ss_pred             EEEEE---eccchhhhhhcccceEEEcccCcccccCCccc-CCC-------CCCCEEEecCCCCCCCcCcccc--CCCCC
Q 015663          189 IILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVV-GKL-------NLLKGLNISHNNLTGDIPSSLR--NLTEV  255 (403)
Q Consensus       189 ~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l-------~~L~~L~L~~n~l~~~~p~~~~--~l~~L  255 (403)
                      +....   ..++...+..+++|+.|++++|.++ .+|... ...       ++|+.|+|++|+++ .+|..+.  .+++|
T Consensus       438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L  515 (636)
T 4eco_A          438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL  515 (636)
T ss_dssp             EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred             EECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence            32222   2344445555788888888888888 555433 222       27888888888888 6777776  88888


Q ss_pred             CEEeccCCcCCCCCCccccCCCCCCEEeC------cCCcCccCCCCCC-CCCCCCCCcCCCCCC
Q 015663          256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNL------SYNQFEGPIPRGS-QFNTFPNDSYVGNSG  312 (403)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L------~~N~l~~~ip~~~-~~~~~~~~~~~gn~~  312 (403)
                      +.|+|++|++++ +|..+..+++|+.|++      ++|++.+.+|... .+..+..+.+.+|..
T Consensus       516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            888888888886 7888888888888888      4567777777653 344555666666643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=4.4e-30  Score=257.17  Aligned_cols=271  Identities=20%  Similarity=0.196  Sum_probs=230.2

Q ss_pred             CCCCccEEECCCCCCCCcCC--CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCc-cccCCCCcCEE
Q 015663            5 GIATLYYLDLSNNFLTNIEY--FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPR-KFVKSCNLTSL   68 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L   68 (403)
                      ++++|++|++++|.++.+++  ..+++|+.|++++|             ++|++|++++|.+.+.+|. .+..+++|++|
T Consensus       276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            57899999999999997765  67889999999998             7999999999999877765 48999999999


Q ss_pred             EccCCcCcCCC--CccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccC
Q 015663           69 NLNGNRLEGPL--PPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH  146 (403)
Q Consensus        69 ~L~~n~l~~~~--p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  146 (403)
                      ++++|++++..  +..+.++++|++|++++|.+.+..|..+..+++|++|++++|++.+..+.. .+..+++|+.|++++
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~  434 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSH  434 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECTT
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch-hhhCcccCCEEECCC
Confidence            99999999655  778999999999999999999988999999999999999999998766554 237899999999999


Q ss_pred             CccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC
Q 015663          147 NEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG  226 (403)
Q Consensus       147 n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  226 (403)
                      |.+++..+.. +..++.|+.+...........                ......+..+++|+.|++++|.+++..|..+.
T Consensus       435 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  497 (606)
T 3t6q_A          435 SLLDISSEQL-FDGLPALQHLNLQGNHFPKGN----------------IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT  497 (606)
T ss_dssp             CCCBTTCTTT-TTTCTTCCEEECTTCBCGGGE----------------ECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CccCCcCHHH-HhCCCCCCEEECCCCCCCccc----------------cccchhhccCCCccEEECCCCccCccChhhhc
Confidence            9998776654 555666666554222211000                00112345589999999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663          227 KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  294 (403)
Q Consensus       227 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip  294 (403)
                      .+++|++|+|++|++++..|..+.++++| .|++++|++++.+|..+..+++|+.+++++|++.+..+
T Consensus       498 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999999999999 99999999998889989999999999999999997655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.6e-29  Score=234.06  Aligned_cols=246  Identities=20%  Similarity=0.187  Sum_probs=176.4

Q ss_pred             CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~   87 (403)
                      +++.++++++.++.++....++           +++|++++|.+++..|..|.++++|++|++++|++++..|..|.+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~-----------l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  102 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPD-----------TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR  102 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTT-----------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT
T ss_pred             cCCEEECCCCCccccCCCCCCC-----------CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC
Confidence            5788888888887665433333           46677777777766666777777777777777777766677777777


Q ss_pred             CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccc--ccchhhhhhhhhhc
Q 015663           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG--VLLTGYLDNFKAMM  165 (403)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~  165 (403)
                      +|++|++++|.++. +|..+.  ++|++|++++|++.+..+..+  ..+++|++|++++|.++.  ..+.. +..+ .|+
T Consensus       103 ~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~  175 (332)
T 2ft3_A          103 KLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLN  175 (332)
T ss_dssp             TCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGG--SSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCS
T ss_pred             CCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHh--CCCccCCEEECCCCccccCCCCccc-ccCC-ccC
Confidence            77777777777775 444433  677777777777755443333  667777777777777753  22222 2222 333


Q ss_pred             ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc
Q 015663          166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI  245 (403)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  245 (403)
                      .+.........                   ++..   ..++|+.|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus       176 ~L~l~~n~l~~-------------------l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          176 YLRISEAKLTG-------------------IPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CCBCCSSBCSS-------------------CCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             EEECcCCCCCc-------------------cCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence            33221111111                   1111   1367999999999999888889999999999999999999877


Q ss_pred             CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663          246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  294 (403)
Q Consensus       246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip  294 (403)
                      +..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus       234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred             hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence            888999999999999999999 788889999999999999999985433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.6e-29  Score=248.39  Aligned_cols=110  Identities=27%  Similarity=0.345  Sum_probs=72.0

Q ss_pred             hhcccceEEEcccCcccccCCc-ccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCC
Q 015663          202 RILTIFMTIDLSSNKFQGGIPE-VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS  280 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  280 (403)
                      ..+++|+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+.  ++|+.|++++|+++ .+|..+..+++|+
T Consensus       371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~  447 (520)
T 2z7x_B          371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ  447 (520)
T ss_dssp             TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence            3456666666666666653443 355666666666666666655555443  67888888888887 6677667888888


Q ss_pred             EEeCcCCcCccCCCCC--CCCCCCCCCcCCCCCCCCC
Q 015663          281 VLNLSYNQFEGPIPRG--SQFNTFPNDSYVGNSGLCG  315 (403)
Q Consensus       281 ~L~L~~N~l~~~ip~~--~~~~~~~~~~~~gn~~lc~  315 (403)
                      +|++++|+++ .+|..  ..+..+..+.+.+|+..|.
T Consensus       448 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          448 ELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence            8888888888 56654  2334455555666665553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=6.1e-30  Score=236.24  Aligned_cols=227  Identities=18%  Similarity=0.243  Sum_probs=177.9

Q ss_pred             CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   84 (403)
                      ..+.++.|+|++|.++.++ ..+.++..|        ++|++++|.++ .+|..++.+++|++|++++|+++ .+|..|.
T Consensus        79 ~~~~l~~L~L~~n~l~~lp-~~l~~l~~L--------~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~  147 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFP-DQAFRLSHL--------QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA  147 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCC-SCGGGGTTC--------SEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG
T ss_pred             cccceeEEEccCCCchhcC-hhhhhCCCC--------CEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh
Confidence            3467888888888888554 333444444        78888888888 78888888888888888888888 7788888


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccC---------CCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccch
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEI---------LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT  155 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  155 (403)
                      ++++|++|++++|.+.+.+|..+..         +++|++|++++|+++ .+|..+  ..+++|++|++++|.+++..+ 
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l--~~l~~L~~L~L~~N~l~~l~~-  223 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI--ANLQNLKSLKIRNSPLSALGP-  223 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG--GGCTTCCEEEEESSCCCCCCG-
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh--cCCCCCCEEEccCCCCCcCch-
Confidence            8888888888888777777776554         888888888888886 566554  778888888888888875432 


Q ss_pred             hhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEE
Q 015663          156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN  235 (403)
Q Consensus       156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  235 (403)
                      . +                                           ..+++|+.|++++|++.+.+|..++.+++|++|+
T Consensus       224 ~-l-------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          224 A-I-------------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             G-G-------------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             h-h-------------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence            1 1                                           1267788888888888888888888888888888


Q ss_pred             ecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663          236 ISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       236 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      |++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus       260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            8888888888888888888888888888888888888888888888888877665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=2.3e-29  Score=249.59  Aligned_cols=135  Identities=21%  Similarity=0.236  Sum_probs=98.5

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN   73 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n   73 (403)
                      ...+++|+++|.+++++....++++.|++++|             ++|++|++++|.+++..|+.|.++++|++|++++|
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            34467888888888766555577888888877             67888888888888777888888888888888888


Q ss_pred             cCcCCCCccccCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCCCCCccCCCCc--cEEEccCCcc
Q 015663           74 RLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL--RIIDLSHNEF  149 (403)
Q Consensus        74 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~l~~n~l  149 (403)
                      +++ .+|..  .+++|++|++++|.+++. .|..|+.+++|++|++++|++++.   .  +..+++|  ++|++++|.+
T Consensus       111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~--~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D--LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T--TGGGTTSCEEEEEEEESSC
T ss_pred             cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c--hhhhhhceeeEEEeecccc
Confidence            888 56665  788888888888888773 357788888888888888877542   1  1333444  6666666555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=3.4e-30  Score=263.86  Aligned_cols=297  Identities=18%  Similarity=0.210  Sum_probs=215.5

Q ss_pred             CCCCccEEECCCCCCCC------------------cCC--C--CCCCCCeEeCCCC-------------CCCCEEECcCC
Q 015663            5 GIATLYYLDLSNNFLTN------------------IEY--F--PPTNMTQLNFDSN-------------LTHKVLDMRMN   49 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~------------------~~~--~--~~~~L~~L~l~~n-------------~~L~~L~Ls~n   49 (403)
                      ++++|++|+|++|.+++                  +++  .  .+++|+.|+|++|             ++|+.|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            57899999999999999                  443  3  6788999999887             68899999999


Q ss_pred             c-Ccc-cCCccccCCC-------CcCEEEccCCcCcCCCCc--cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           50 N-FNG-KIPRKFVKSC-------NLTSLNLNGNRLEGPLPP--SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        50 ~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      . +++ .+|..++.++       +|++|++++|+++ .+|.  .|+++++|+.|++++|.++ .+| .+..+++|+.|++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence            7 887 7887666554       8999999999988 7888  8889999999999999988 577 7888899999999


Q ss_pred             ccccccCcCCCCCCccCCCC-ccEEEccCCccccccchhhhhhhh--hhcccCCCccccccc-CCCC------CCCcceE
Q 015663          119 RSNRFWGPIGENTTIVPFPS-LRIIDLSHNEFTGVLLTGYLDNFK--AMMHGNNISVEVDYM-TPLN------SSNYYES  188 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~--~L~~~~~~~~~~~~~-~~~~------~~~~~~~  188 (403)
                      ++|+++ .+|..+  ..+++ |+.|++++|.++. +|.. +..+.  .|+.+.......... +...      ....+..
T Consensus       603 s~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~L~~-lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          603 DYNQIE-EIPEDF--CAFTDQVEGLGFSHNKLKY-IPNI-FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             CSSCCS-CCCTTS--CEECTTCCEEECCSSCCCS-CCSC-CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             cCCccc-cchHHH--hhccccCCEEECcCCCCCc-Cchh-hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            999887 677665  77888 9999999998883 3432 22222  244443322221110 1000      0112233


Q ss_pred             EEEEE---eccchhhhhhcccceEEEcccCcccccCCcccCCC--------CCCCEEEecCCCCCCCcCcccc--CCCCC
Q 015663          189 IILTI---KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL--------NLLKGLNISHNNLTGDIPSSLR--NLTEV  255 (403)
Q Consensus       189 ~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l--------~~L~~L~L~~n~l~~~~p~~~~--~l~~L  255 (403)
                      +.+..   ..++...+..+++|+.|+|++|.++ .+|..+...        ++|+.|+|++|+++ .+|..+.  .+++|
T Consensus       678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L  755 (876)
T 4ecn_A          678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL  755 (876)
T ss_dssp             EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred             EEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence            33222   2344445556788999999999988 566544332        28999999999998 7888776  88999


Q ss_pred             CEEeccCCcCCCCCCccccCCCCCCEEeCcC------CcCccCCCCCC-CCCCCCCCcCCCCCC
Q 015663          256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLSY------NQFEGPIPRGS-QFNTFPNDSYVGNSG  312 (403)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~ip~~~-~~~~~~~~~~~gn~~  312 (403)
                      +.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|... .+..+..+.+.+|..
T Consensus       756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            999999999986 788888899999999876      77788888653 345566666666643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=2.5e-29  Score=242.68  Aligned_cols=203  Identities=21%  Similarity=0.187  Sum_probs=132.2

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      ++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|.++...+..|..+++|+.|++++|
T Consensus       102 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~  181 (452)
T 3zyi_A          102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL  181 (452)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred             CEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence            55555555555555555555555555555555555444444555555555555555555544445555555555555553


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (403)
                      +..+.++.. .+..+++|++|++++|.+++...                                              .
T Consensus       182 ~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~----------------------------------------------~  214 (452)
T 3zyi_A          182 KKLEYISEG-AFEGLFNLKYLNLGMCNIKDMPN----------------------------------------------L  214 (452)
T ss_dssp             TTCCEECTT-TTTTCTTCCEEECTTSCCSSCCC----------------------------------------------C
T ss_pred             CCccccChh-hccCCCCCCEEECCCCccccccc----------------------------------------------c
Confidence            333333322 12455555555555555543210                                              1


Q ss_pred             hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV  281 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  281 (403)
                      ..+++|+.|++++|.+++..|..|..+++|+.|+|++|++++..+..+.++++|+.|+|++|++++..+..+..+++|+.
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred             cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence            12677888888888888888888888888888888888888777888888888888888888888777777888888888


Q ss_pred             EeCcCCcCcc
Q 015663          282 LNLSYNQFEG  291 (403)
Q Consensus       282 L~L~~N~l~~  291 (403)
                      |++++|.+.+
T Consensus       295 L~L~~Np~~C  304 (452)
T 3zyi_A          295 LHLHHNPWNC  304 (452)
T ss_dssp             EECCSSCEEC
T ss_pred             EEccCCCcCC
Confidence            8888888764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.2e-29  Score=232.23  Aligned_cols=247  Identities=20%  Similarity=0.215  Sum_probs=148.8

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCC--CCccccCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP--LPPSLVNCH   87 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~   87 (403)
                      +.++.+++.++.++....++           |++|++++|.++...+..|.++++|++|++++|+++..  .+..+.+++
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~-----------l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~   78 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSS-----------ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT   78 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTT-----------CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred             CEEEcCCCCcccCCCCCCCC-----------CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc
Confidence            45677777777665433222           35666777777644444466777777777777776622  245566677


Q ss_pred             CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCC-CCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (403)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  166 (403)
                      +|++|++++|.++. +|..+..+++|++|++++|++++..+ ..  +..+++|++|++++|.+.+..+.. +        
T Consensus        79 ~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~-~--------  146 (306)
T 2z66_A           79 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGI-F--------  146 (306)
T ss_dssp             CCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTT--TTTCTTCCEEECTTSCCEECSTTT-T--------
T ss_pred             ccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchh--hhhccCCCEEECCCCcCCccchhh-c--------
Confidence            77777777777765 55556677777777777777655433 22  266677777777777766543322 1        


Q ss_pred             cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccc-cCCcccCCCCCCCEEEecCCCCCCCc
Q 015663          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG-GIPEVVGKLNLLKGLNISHNNLTGDI  245 (403)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~  245 (403)
                                                         ..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..
T Consensus       147 -----------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  191 (306)
T 2z66_A          147 -----------------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS  191 (306)
T ss_dssp             -----------------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             -----------------------------------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC
Confidence                                               114556666666666664 45666666666666666666666555


Q ss_pred             CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCC-C-CCCCCCcCCCCCCCC
Q 015663          246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQ-F-NTFPNDSYVGNSGLC  314 (403)
Q Consensus       246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~-~-~~~~~~~~~gn~~lc  314 (403)
                      |..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|.... + ..+..+.+.+|+..|
T Consensus       192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            66666666666666666666655555566666666666666666655554321 1 134444444444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=6.7e-30  Score=231.54  Aligned_cols=228  Identities=19%  Similarity=0.136  Sum_probs=197.6

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L   89 (403)
                      +.++.+++.++.++....+           +|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~~~-----------~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   82 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPA-----------ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL   82 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCT-----------TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             eEEEcCcCCcccCCcCCCC-----------CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCC
Confidence            5788899888877543332           34778999999998777889999999999999999998778899999999


Q ss_pred             CEEEccCCc-CCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccC
Q 015663           90 EVLNVGNNQ-INDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN  168 (403)
Q Consensus        90 ~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~  168 (403)
                      ++|++++|. ++...|..+..+++|++|++++|.+++..+..+  ..+++|++|++++|.+++..+..            
T Consensus        83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~------------  148 (285)
T 1ozn_A           83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDDT------------  148 (285)
T ss_dssp             CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT------------
T ss_pred             CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCcccccCHhH------------
Confidence            999999997 888778899999999999999999987767665  88999999999999998654322            


Q ss_pred             CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015663          169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS  248 (403)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  248 (403)
                                                      +..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|..
T Consensus       149 --------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  196 (285)
T 1ozn_A          149 --------------------------------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (285)
T ss_dssp             --------------------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             --------------------------------hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence                                            122678999999999999777778999999999999999999888999


Q ss_pred             ccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663          249 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  294 (403)
Q Consensus       249 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip  294 (403)
                      +..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            9999999999999999998777889999999999999999986444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=4.6e-29  Score=239.98  Aligned_cols=236  Identities=21%  Similarity=0.180  Sum_probs=155.5

Q ss_pred             ccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcC
Q 015663            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL   75 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l   75 (403)
                      .+.++.++..++.++....++++.|+|++|             ++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            345555555555554433334433333332             3346666666666655556666666666666666666


Q ss_pred             cCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccch
Q 015663           76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT  155 (403)
Q Consensus        76 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  155 (403)
                      +...+..|.++++|++|++++|.++...+..|..+++|++|++++|+..+.++.. .+..+++|++|++++|.++.... 
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~-  202 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIPN-  202 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCSSCCC-
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCccccc-
Confidence            6444445666666666666666666655556666666666666664433333332 12556666666666666653210 


Q ss_pred             hhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEE
Q 015663          156 GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN  235 (403)
Q Consensus       156 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  235 (403)
                                                                   ...+++|+.|++++|.+++..|..|..+++|++|+
T Consensus       203 ---------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  237 (440)
T 3zyj_A          203 ---------------------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW  237 (440)
T ss_dssp             ---------------------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ---------------------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence                                                         11267788888888888887788888888888888


Q ss_pred             ecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc
Q 015663          236 ISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG  291 (403)
Q Consensus       236 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  291 (403)
                      |++|++++..+..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+.+
T Consensus       238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            88888887777788888888888888888887777778888888888888888764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=2.9e-28  Score=247.22  Aligned_cols=322  Identities=20%  Similarity=0.146  Sum_probs=210.0

Q ss_pred             CCCccEEECCCCCCCCcCCCCC-----CCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCE
Q 015663            6 IATLYYLDLSNNFLTNIEYFPP-----TNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTS   67 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~~~~-----~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~   67 (403)
                      .++|+.|++++|.+++..+..+     ++|+.|++++|             ++|++|++++|.+++..|..|.++++|++
T Consensus       221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  300 (680)
T 1ziw_A          221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY  300 (680)
T ss_dssp             TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred             hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence            3667788888888877766333     34777777776             57788888888887777777777777777


Q ss_pred             EEccCCcCcC-----CCCc----cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccc----------------
Q 015663           68 LNLNGNRLEG-----PLPP----SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR----------------  122 (403)
Q Consensus        68 L~L~~n~l~~-----~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~----------------  122 (403)
                      |++++|...+     .+|.    .|..+++|++|++++|.+++..|..|..+++|++|++++|.                
T Consensus       301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~  380 (680)
T 1ziw_A          301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH  380 (680)
T ss_dssp             EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred             EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence            7777654432     2222    56667777777777777777666666666666666666554                


Q ss_pred             ------------ccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCC--CCCCcceE
Q 015663          123 ------------FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL--NSSNYYES  188 (403)
Q Consensus       123 ------------l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~--~~~~~~~~  188 (403)
                                  +++..+..+  ..+++|+.|++++|.+++..+...+.+++.|+.+.........+...  .....+..
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~  458 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR  458 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred             CcCceEECCCCCCCeEChhhh--hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence                        333333333  56667777777777776655544455555555544433222111110  00111222


Q ss_pred             EEEEEe-----ccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc--------CccccCCCCC
Q 015663          189 IILTIK-----GIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI--------PSSLRNLTEV  255 (403)
Q Consensus       189 ~~~~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--------p~~~~~l~~L  255 (403)
                      +.....     ...+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..        +..+.++++|
T Consensus       459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L  538 (680)
T 1ziw_A          459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL  538 (680)
T ss_dssp             EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred             chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence            221111     112234456789999999999999888888999999999999999997532        1237889999


Q ss_pred             CEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCC--CCCCCCCCcCCCCC-------------------CCC
Q 015663          256 ESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS--QFNTFPNDSYVGNS-------------------GLC  314 (403)
Q Consensus       256 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~~~~~~~~~gn~-------------------~lc  314 (403)
                      +.|++++|+++...+..|.++++|+.|++++|++++ +|...  .+..+..+.+.+|.                   .+.
T Consensus       539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~  617 (680)
T 1ziw_A          539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR  617 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred             CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEcc
Confidence            999999999996555679999999999999999994 55442  33445544454442                   245


Q ss_pred             CCCCCCCCCC-CCCCCC
Q 015663          315 GFPLLESCNI-DEAPEP  330 (403)
Q Consensus       315 ~~~~~~~C~~-~~~~~~  330 (403)
                      ++|+.|+|.. .+...+
T Consensus       618 ~N~~~c~c~~~~~~~~~  634 (680)
T 1ziw_A          618 FNPFDCTCESIAWFVNW  634 (680)
T ss_dssp             TCCCCBCCCCCSSEECC
T ss_pred             CCCcccCCccHHHHHHH
Confidence            7899999985 555444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=3.1e-29  Score=246.45  Aligned_cols=292  Identities=19%  Similarity=0.159  Sum_probs=173.1

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCc
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (403)
                      ++||+++|.++.++....++|+.|++++|             ++|++|++++|.+++..|+.|+++++|++|++++|+++
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            35666666666554433356666666665             56677777777777666667777777777777777776


Q ss_pred             CCCCccccCCCCCCEEEccCCcCCc-CCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCc--cEEEccCCcc--cc
Q 015663           77 GPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL--RIIDLSHNEF--TG  151 (403)
Q Consensus        77 ~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L--~~L~l~~n~l--~~  151 (403)
                       .+|..  .+++|++|++++|.+++ ..|..++.+++|++|++++|.+++.     .+..+++|  ++|++++|.+  .+
T Consensus        83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l~~~~  154 (520)
T 2z7x_B           83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGETYGEK  154 (520)
T ss_dssp             -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred             -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccccccc
Confidence             45544  66777777777777765 3456667777777777777666431     12444555  6666666655  33


Q ss_pred             ccchhhh-------------------------hhhhhhcccCCC------------------------------------
Q 015663          152 VLLTGYL-------------------------DNFKAMMHGNNI------------------------------------  170 (403)
Q Consensus       152 ~~~~~~~-------------------------~~l~~L~~~~~~------------------------------------  170 (403)
                      ..+..+.                         .+++.|+.++..                                    
T Consensus       155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~  234 (520)
T 2z7x_B          155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW  234 (520)
T ss_dssp             CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred             cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence            2222110                         011111111100                                    


Q ss_pred             ---------------------ccccc-ccCC-C-----CCCCcceEEEEEEecc--------------------------
Q 015663          171 ---------------------SVEVD-YMTP-L-----NSSNYYESIILTIKGI--------------------------  196 (403)
Q Consensus       171 ---------------------~~~~~-~~~~-~-----~~~~~~~~~~~~~~~~--------------------------  196 (403)
                                           ..... .++. .     .....+.........+                          
T Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l  314 (520)
T 2z7x_B          235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM  314 (520)
T ss_dssp             HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc
Confidence                                 00000 0000 0     0011111111111111                          


Q ss_pred             chhh-hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCC--CcCccccCCCCCCEEeccCCcCCCCCCc-c
Q 015663          197 DIKM-ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG--DIPSSLRNLTEVESLDLSSNMLVGHIPT-Q  272 (403)
Q Consensus       197 ~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~  272 (403)
                      .... +..+++|++|++++|.+++.+|..+..+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+|. .
T Consensus       315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred             ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence            1111 1456788888888888888788888888888889988888885  4556788888888888888888875554 4


Q ss_pred             ccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCC
Q 015663          273 LTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGN  310 (403)
Q Consensus       273 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn  310 (403)
                      +..+++|+.|++++|++++.+|.... ..+..+.+.+|
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N  431 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSN  431 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSS
T ss_pred             hccCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCC
Confidence            77788888888888888877665432 34555555555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=1.2e-28  Score=229.58  Aligned_cols=290  Identities=21%  Similarity=0.257  Sum_probs=188.1

Q ss_pred             CCCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~   72 (403)
                      .+++|++|+++++.+..... ..+++|+.|++++|           ++|++|++++|.++. +| .|..+++|++|++++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNE  119 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTT
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcC
Confidence            45788889999888887754 56778888888877           678888888888874 33 578888888888888


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015663           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (403)
Q Consensus        73 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  152 (403)
                      |.++ .++. +.++++|+.|++++|...... ..+..+++|++|++++|.+.+..+    +..+++|++|++++|.+.+.
T Consensus       120 n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          120 DNIS-DISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             SCCC-CCGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCC
T ss_pred             Cccc-Cchh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccc
Confidence            8888 3444 778888888888888655533 347788888888888887754433    36778888888888887765


Q ss_pred             cchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch-hhhhhcccceEEEcccCcccccCCcccCCCCCC
Q 015663          153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL  231 (403)
Q Consensus       153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  231 (403)
                      .+   +..++.|+.+..................+..+....+.+.. .....+++|+.|++++|.+++ + ..+..+++|
T Consensus       193 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L  267 (347)
T 4fmz_A          193 SP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKL  267 (347)
T ss_dssp             GG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred             cc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCc
Confidence            44   44444554444322222211111111122222222211111 113446777777777777764 2 346677777


Q ss_pred             CEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCC
Q 015663          232 KGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNS  311 (403)
Q Consensus       232 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~  311 (403)
                      ++|++++|.+++.  ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..| ...+..+..+++.+|+
T Consensus       268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence            7777777777643  346677777777777777776667777777777777777777775544 3344455555555553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=237.39  Aligned_cols=231  Identities=19%  Similarity=0.180  Sum_probs=182.2

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ++++.|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|++++|.++...+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            56788888888888777777888888888888888888666677888888888888888888766667778888888888


Q ss_pred             ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI  198 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (403)
                      ++|++.+..+..+  ..+++|++|++++|...+..+..                                          
T Consensus       144 ~~N~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~------------------------------------------  179 (440)
T 3zyj_A          144 RNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEG------------------------------------------  179 (440)
T ss_dssp             CSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTT------------------------------------------
T ss_pred             CCCcccccCHHHh--hhCcccCEeCCCCCCCcceeCcc------------------------------------------
Confidence            8888765544444  67788888888775433222221                                          


Q ss_pred             hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663          199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  278 (403)
Q Consensus       199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  278 (403)
                       .+..+++|+.|++++|+++ .+|. +..+++|++|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++
T Consensus       180 -~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          180 -AFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             -TTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             -hhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence             1233788999999999999 5664 789999999999999999888999999999999999999999989999999999


Q ss_pred             CCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCCC
Q 015663          279 LSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGF  316 (403)
Q Consensus       279 L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~~  316 (403)
                      |+.|+|++|++++..+.. ..+..+..+.+.+||+.|.+
T Consensus       257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             CCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            999999999999544433 23456667778888887754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.2e-28  Score=237.82  Aligned_cols=251  Identities=18%  Similarity=0.129  Sum_probs=203.4

Q ss_pred             ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~   88 (403)
                      ...++.++..++.++....           +++++|+|++|.+++..|+.|.++++|++|+|++|++++..+..|.++++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~-----------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  124 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP-----------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS  124 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC-----------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CcEEEECCCCcCccCCCCC-----------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCccc
Confidence            3456666666665543222           34588899999999888899999999999999999999888888999999


Q ss_pred             CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccC
Q 015663           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN  168 (403)
Q Consensus        89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~  168 (403)
                      |++|++++|.++...+..|..+++|++|++++|++++..+..+  ..+++|++|++++|...+..+..            
T Consensus       125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~------------  190 (452)
T 3zyi_A          125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEG------------  190 (452)
T ss_dssp             CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTT------------
T ss_pred             CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChh------------
Confidence            9999999999998777788999999999999999876555544  88999999999985433332222            


Q ss_pred             CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015663          169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS  248 (403)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  248 (403)
                                                     .+..+++|+.|++++|++++ +| .+..+++|++|+|++|.+++..|..
T Consensus       191 -------------------------------~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~  237 (452)
T 3zyi_A          191 -------------------------------AFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGS  237 (452)
T ss_dssp             -------------------------------TTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGG
T ss_pred             -------------------------------hccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCccc
Confidence                                           12237889999999999994 45 4789999999999999999888999


Q ss_pred             ccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCCCC
Q 015663          249 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGFP  317 (403)
Q Consensus       249 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~~~  317 (403)
                      |.++++|+.|++++|++++..+..|..+++|+.|+|++|++++..+.. ..+..+..+.+.+||+.|.+.
T Consensus       238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            999999999999999999888999999999999999999999544433 235566677788888877543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=4.1e-29  Score=230.69  Aligned_cols=209  Identities=16%  Similarity=0.222  Sum_probs=188.7

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ..++.|++++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            46699999999998 88889999999999999999999 89999999999999999999999 47999999999999999


Q ss_pred             ccccccCcCCCCCC-------ccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEE
Q 015663          119 RSNRFWGPIGENTT-------IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIIL  191 (403)
Q Consensus       119 ~~n~l~~~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (403)
                      ++|++.+.+|..+.       +..+++|++|++++|.++ ..|.. +                                 
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l---------------------------------  202 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-I---------------------------------  202 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-G---------------------------------
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-h---------------------------------
Confidence            99999888888651       234899999999999998 33332 1                                 


Q ss_pred             EEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCc
Q 015663          192 TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT  271 (403)
Q Consensus       192 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  271 (403)
                                ..+++|+.|++++|.+++ +|..+..+++|++|++++|++.+.+|..++.+++|+.|++++|.+.+.+|.
T Consensus       203 ----------~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          203 ----------ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             ----------GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             ----------cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence                      126789999999999994 666799999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEeCcCCcCccCCCCC
Q 015663          272 QLTSLKYLSVLNLSYNQFEGPIPRG  296 (403)
Q Consensus       272 ~~~~l~~L~~L~L~~N~l~~~ip~~  296 (403)
                      .+..+++|++|++++|++.+.+|..
T Consensus       272 ~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             TGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             hhhcCCCCCEEeCCCCCchhhccHH
Confidence            9999999999999999999999976

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=5.5e-29  Score=247.36  Aligned_cols=122  Identities=22%  Similarity=0.197  Sum_probs=86.3

Q ss_pred             CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEc
Q 015663            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L   70 (403)
                      +++++||+++|.++++.+   ..+++|+.|++++|             ++|++|++++|.+++..|+.|+++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            357888888888887765   45666777777776             57777777777777666677777777777777


Q ss_pred             cCCcCcCCCCccccCCCCCCEEEccCCcCCc-CCChhccCCCCCcEEEcccccccCcCC
Q 015663           71 NGNRLEGPLPPSLVNCHHLEVLNVGNNQIND-NFPNWLEILPELQVLILRSNRFWGPIG  128 (403)
Q Consensus        71 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~  128 (403)
                      ++|++++..+..|+++++|++|++++|.+++ .+|..++++++|++|++++|++++..+
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~  166 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence            7777774444457777777777777777765 356777777777777777776654433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.4e-28  Score=233.04  Aligned_cols=281  Identities=19%  Similarity=0.213  Sum_probs=205.1

Q ss_pred             CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L   68 (403)
                      ++++|++|++++|.++++++   ..+++|+.|++++|             ++|++|++++|.++...+..|.++++|++|
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            47899999999999998876   67889999999988             689999999999995555567899999999


Q ss_pred             EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcC-CCCC-------------Ccc
Q 015663           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI-GENT-------------TIV  134 (403)
Q Consensus        69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~-------------~~~  134 (403)
                      ++++|++++..|..|.++++|++|++++|.+++..   +..+++|+.|++++|.+++.. +..+             ...
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~  223 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  223 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeecccc
Confidence            99999999877888999999999999999998743   445666777777666653311 0000             001


Q ss_pred             CCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEccc
Q 015663          135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS  214 (403)
Q Consensus       135 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  214 (403)
                      ..++|+.|++++|.+++.   ..+..++.|+.++....                   .+....+..+..+++|+.|++++
T Consensus       224 ~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n-------------------~l~~~~~~~~~~l~~L~~L~L~~  281 (390)
T 3o6n_A          224 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-------------------ELEKIMYHPFVKMQRLERLYISN  281 (390)
T ss_dssp             CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-------------------CCCEEESGGGTTCSSCCEEECCS
T ss_pred             ccccccEEECCCCCCccc---HHHcCCCCccEEECCCC-------------------cCCCcChhHccccccCCEEECCC
Confidence            124555666666655543   12333333333332111                   11222334455689999999999


Q ss_pred             CcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663          215 NKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  294 (403)
Q Consensus       215 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip  294 (403)
                      |++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++.. +  +..+++|+.|++++|++++.-.
T Consensus       282 n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~  356 (390)
T 3o6n_A          282 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  356 (390)
T ss_dssp             SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH
Confidence            99995 5667788999999999999998 6777788999999999999999854 3  6788999999999999986322


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCC
Q 015663          295 RGSQFNTFPNDSYVGNSGLCGF  316 (403)
Q Consensus       295 ~~~~~~~~~~~~~~gn~~lc~~  316 (403)
                      . ..+..+....+.+++..|+.
T Consensus       357 ~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          357 R-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             H-HHTTTCCTTTBCCCCSCCCT
T ss_pred             H-HHHHHHHhhcccccCceecc
Confidence            1 12334444455666666653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=7.8e-29  Score=226.85  Aligned_cols=231  Identities=21%  Similarity=0.212  Sum_probs=202.5

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcc--cCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNG--KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   84 (403)
                      ++|++|++++|.++.+++..+.++..|        ++|++++|.++.  ..|..+..+++|++|++++|.++ .+|..+.
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L--------~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~   98 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQL--------TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL   98 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTC--------SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccC--------CEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcC
Confidence            589999999999998776666777665        999999999983  34677888999999999999999 6788899


Q ss_pred             CCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc-cchhhhhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV-LLTGYLDNFK  162 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~  162 (403)
                      ++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+  ..+++|++|++++|.+++. .+..      
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~------  170 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI------  170 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSC------
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhH------
Confidence            99999999999999998655 578999999999999999988777766  8899999999999998762 2221      


Q ss_pred             hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC
Q 015663          163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (403)
Q Consensus       163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  242 (403)
                                                            +..+++|+.|++++|.+++..|..+..+++|++|++++|.++
T Consensus       171 --------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          171 --------------------------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             --------------------------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             --------------------------------------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence                                                  122678999999999999888999999999999999999999


Q ss_pred             CCcCccccCCCCCCEEeccCCcCCCCCCccccCCC-CCCEEeCcCCcCccC
Q 015663          243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK-YLSVLNLSYNQFEGP  292 (403)
Q Consensus       243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~  292 (403)
                      +..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++.
T Consensus       213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            77777899999999999999999999999999985 999999999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.9e-28  Score=242.98  Aligned_cols=296  Identities=18%  Similarity=0.198  Sum_probs=195.7

Q ss_pred             CCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEc
Q 015663            7 ATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNL   70 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L   70 (403)
                      ++|++|++++|.++++++   ..+++|+.|++++|             ++|++||+++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            679999999999998876   67888999999988             78999999999998 66666  8999999999


Q ss_pred             cCCcCcC-CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCC--cEEEcccccc--cCcCCCCCC-------------
Q 015663           71 NGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL--QVLILRSNRF--WGPIGENTT-------------  132 (403)
Q Consensus        71 ~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~-------------  132 (403)
                      ++|++++ .+|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|..+.             
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  205 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP  205 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence            9999986 3468899999999999999999873   34445555  9999999988  665555431             


Q ss_pred             -----------ccCCCCccEEEccCCc-----------------------------------------------------
Q 015663          133 -----------IVPFPSLRIIDLSHNE-----------------------------------------------------  148 (403)
Q Consensus       133 -----------~~~l~~L~~L~l~~n~-----------------------------------------------------  148 (403)
                                 +..+++|+.+++++|.                                                     
T Consensus       206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  285 (562)
T 3a79_B          206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN  285 (562)
T ss_dssp             SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred             ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence                       0123344444444442                                                     


Q ss_pred             --cccccchhhh----hhhhhhcccCCCcccccccCC-----CCCCCcceEEEEEEeccchhh-hhhcccceEEEcccCc
Q 015663          149 --FTGVLLTGYL----DNFKAMMHGNNISVEVDYMTP-----LNSSNYYESIILTIKGIDIKM-ERILTIFMTIDLSSNK  216 (403)
Q Consensus       149 --l~~~~~~~~~----~~l~~L~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~Ls~n~  216 (403)
                        +++..|..++    .+++.|...+...... .++.     ......+..+......+.... ...+++|+.|++++|.
T Consensus       286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~  364 (562)
T 3a79_B          286 LTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV  364 (562)
T ss_dssp             EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred             cEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence              2211111110    1111111000000000 0000     000000111111111111111 1457889999999999


Q ss_pred             ccccCCcccCCCCCCCEEEecCCCCCC--CcCccccCCCCCCEEeccCCcCCCCCC-ccccCCCCCCEEeCcCCcCccCC
Q 015663          217 FQGGIPEVVGKLNLLKGLNISHNNLTG--DIPSSLRNLTEVESLDLSSNMLVGHIP-TQLTSLKYLSVLNLSYNQFEGPI  293 (403)
Q Consensus       217 l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~i  293 (403)
                      +++.+|..+..+++|++|++++|++++  .+|..+..+++|+.|++++|++++.+| ..+..+++|+.|++++|++++.+
T Consensus       365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  444 (562)
T 3a79_B          365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV  444 (562)
T ss_dssp             CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred             cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence            998888889999999999999999985  234678889999999999999987455 45778888999999999888777


Q ss_pred             CCCCCCCCCCCCcCCCC
Q 015663          294 PRGSQFNTFPNDSYVGN  310 (403)
Q Consensus       294 p~~~~~~~~~~~~~~gn  310 (403)
                      |.... ..+..+.+.+|
T Consensus       445 ~~~l~-~~L~~L~L~~N  460 (562)
T 3a79_B          445 FRCLP-PKVKVLDLHNN  460 (562)
T ss_dssp             GSSCC-TTCSEEECCSS
T ss_pred             hhhhc-CcCCEEECCCC
Confidence            76532 34555555555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=8.1e-29  Score=247.99  Aligned_cols=265  Identities=20%  Similarity=0.078  Sum_probs=169.3

Q ss_pred             CCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015663            6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~   74 (403)
                      +++|+.|++++|.+...+. ..+++|+.|++++|          ++|+.|++++|...+..  .+..+++|++|++++|+
T Consensus       284 l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  361 (606)
T 3vq2_A          284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA  361 (606)
T ss_dssp             GTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred             CCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence            4556666666666554432 34445555555554          34555555555433222  44455566666666665


Q ss_pred             CcCC--CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCC-CCCCccCCCCccEEEccCCcccc
Q 015663           75 LEGP--LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG-ENTTIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus        75 l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~  151 (403)
                      +++.  .|..+.++++|++|++++|.+++ +|..+..+++|+.|++++|++.+..+ ..+  ..+++|++|++++|.+++
T Consensus       362 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~  438 (606)
T 3vq2_A          362 LSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYLDISYTNTKI  438 (606)
T ss_dssp             EEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEEECTTSCCEE
T ss_pred             cCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEEECcCCCCCc
Confidence            5533  25555556666666666665554 44555555666666666665555444 222  455566666666665555


Q ss_pred             ccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCC
Q 015663          152 VLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL  231 (403)
Q Consensus       152 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  231 (403)
                      ..+.. +..++.|+.+.........                  ...+..+..+++|+.|++++|.+++..|..+..+++|
T Consensus       439 ~~~~~-~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          439 DFDGI-FLGLTSLNTLKMAGNSFKD------------------NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             CCTTT-TTTCTTCCEEECTTCEEGG------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cchhh-hcCCCCCCEEECCCCcCCC------------------cchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            44432 3333333333321111000                  0011223347899999999999999999999999999


Q ss_pred             CEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCC-CCCEEeCcCCcCccCCCC
Q 015663          232 KGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK-YLSVLNLSYNQFEGPIPR  295 (403)
Q Consensus       232 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ip~  295 (403)
                      ++|++++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.+..+.
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99999999999888999999999999999999999 6777788887 599999999999976554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.5e-28  Score=245.24  Aligned_cols=282  Identities=19%  Similarity=0.208  Sum_probs=211.6

Q ss_pred             CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L   68 (403)
                      ++++|++|+|++|.++++++   ..+++|+.|+|++|             ++|++|++++|.+++..+..|+++++|++|
T Consensus        73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            47899999999999999876   67888999999988             789999999999996666678999999999


Q ss_pred             EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCC-CCC-------------Ccc
Q 015663           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIG-ENT-------------TIV  134 (403)
Q Consensus        69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~-------------~~~  134 (403)
                      ++++|.+++..|..|.++++|++|++++|.+++..   +..+++|+.|++++|.+++... ..+             ...
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            99999999888888999999999999999998853   4456677777777766543110 000             001


Q ss_pred             CCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEccc
Q 015663          135 PFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS  214 (403)
Q Consensus       135 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  214 (403)
                      ..++|+.|++++|.+++.   ..+..++.|..+.....                   .+....+..+..+++|+.|+|++
T Consensus       230 ~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N-------------------~l~~~~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          230 VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-------------------ELEKIMYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-------------------CCCEEESGGGTTCSSCCEEECTT
T ss_pred             cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCC-------------------ccCCCCHHHhcCccCCCEEECCC
Confidence            123555666666655543   12333444433333111                   12222334455689999999999


Q ss_pred             CcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663          215 NKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  294 (403)
Q Consensus       215 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip  294 (403)
                      |.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++. +  +..+++|+.|++++|++++..+
T Consensus       288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~  362 (597)
T 3oja_B          288 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL  362 (597)
T ss_dssp             SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred             CCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence            99995 5777788999999999999999 6888889999999999999999855 3  6778999999999999987533


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCC
Q 015663          295 RGSQFNTFPNDSYVGNSGLCGFP  317 (403)
Q Consensus       295 ~~~~~~~~~~~~~~gn~~lc~~~  317 (403)
                      .. .+..+....+.++...|+.+
T Consensus       363 ~~-~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          363 RA-LFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             HH-HTTTCCTTTBCCCCCCCCTT
T ss_pred             HH-HHHHHhhhccccccccCCcc
Confidence            22 34455556677888888764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=9.6e-28  Score=221.99  Aligned_cols=247  Identities=21%  Similarity=0.231  Sum_probs=200.1

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      +++++|++++|.++++++..+.++..|        ++|++++|.+++..|..|+.+++|++|++++|+++ .+|..+.  
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L--------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--  120 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--  120 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTC--------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCC--------CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--
Confidence            579999999999999987777777665        99999999999888999999999999999999998 6776654  


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccC--cCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  164 (403)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+..  ..+..  +..+++|++|++++|.++.... ....+++.|
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~l~~L~~L~l~~n~l~~l~~-~~~~~L~~L  197 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNITTIPQ-GLPPSLTEL  197 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG--GGGCTTCCEEECCSSCCCSCCS-SCCTTCSEE
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh--ccCCCCcCEEECCCCccccCCc-cccccCCEE
Confidence            789999999999998777889999999999999998854  34443  3788999999999999886433 223333332


Q ss_pred             cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD  244 (403)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  244 (403)
                      ..-++   .                   +....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .
T Consensus       198 ~l~~n---~-------------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  254 (330)
T 1xku_A          198 HLDGN---K-------------------ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K  254 (330)
T ss_dssp             ECTTS---C-------------------CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred             ECCCC---c-------------------CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence            22111   1                   11222334455889999999999999888888999999999999999999 8


Q ss_pred             cCccccCCCCCCEEeccCCcCCCCCCccccC------CCCCCEEeCcCCcCc
Q 015663          245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTS------LKYLSVLNLSYNQFE  290 (403)
Q Consensus       245 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~N~l~  290 (403)
                      +|..+..+++|+.|++++|++++..+..|..      ...++.+++++|.+.
T Consensus       255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            8889999999999999999999877777754      378899999999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=5.3e-28  Score=225.30  Aligned_cols=270  Identities=22%  Similarity=0.266  Sum_probs=205.0

Q ss_pred             CCCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~   72 (403)
                      .+++|++|++++|.+++..+ ..+++|+.|++++|           ++|++|++++|.+++ ++. +..+++|++|++++
T Consensus        64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGA  141 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTT
T ss_pred             hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCC
Confidence            47899999999999998876 78899999999988           789999999999985 443 88899999999999


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015663           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (403)
Q Consensus        73 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  152 (403)
                      |.....+ ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+    +..+++|+.+++++|.+++.
T Consensus       142 n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          142 NHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             CTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCC
Confidence            9666444 458899999999999999887433  7888999999999998865433    36778888888888888766


Q ss_pred             cchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch-hhhhhcccceEEEcccCcccccCCcccCCCCCC
Q 015663          153 LLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL  231 (403)
Q Consensus       153 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  231 (403)
                      .+   +..++.|+.+.........+........+..+....+.+.. .....+++|+.|++++|.+++.  ..+..+++|
T Consensus       215 ~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L  289 (347)
T 4fmz_A          215 TP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL  289 (347)
T ss_dssp             GG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             ch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence            54   44455555544433332222222222223333332222221 2345689999999999999854  457899999


Q ss_pred             CEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663          232 KGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       232 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      ++|++++|.+++..|..++.+++|+.|++++|++++..|  +..+++|+.|++++|.++
T Consensus       290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999999998888999999999999999999997666  788999999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.3e-29  Score=232.13  Aligned_cols=267  Identities=15%  Similarity=0.104  Sum_probs=160.3

Q ss_pred             CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~   72 (403)
                      ++.....+.+++.++.++....++|+.|++++|             ++|++|++++|.+++..|..|.++++|++|++++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            344455666777776665544445555555544             4557777777777766666777777777777777


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEccccc-ccCcCCCCCCccCCCCccEEEccCCccc
Q 015663           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (403)
Q Consensus        73 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~  150 (403)
                      |++++..+..|.++++|++|++++|.++...+ ..+..+++|++|++++|. +.+..+..+  ..+++|++|++++|.++
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF--AGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCC
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc--cCCCCCCEEECCCCCcC
Confidence            77774333336777777777777777776333 356677777777777774 433334433  66777777777777776


Q ss_pred             cccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccC---C
Q 015663          151 GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVG---K  227 (403)
Q Consensus       151 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~---~  227 (403)
                      +..+.. +..++.|+.+.....                   .+..++......+++|+.|++++|.+++..+..+.   .
T Consensus       188 ~~~~~~-l~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          188 SYEPKS-LKSIQNVSHLILHMK-------------------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             EECTTT-TTTCSEEEEEEEECS-------------------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred             ccCHHH-HhccccCCeecCCCC-------------------ccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence            654433 333333333222000                   01112222333466777777777777655444332   3


Q ss_pred             CCCCCEEEecCCCCCC----CcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCC
Q 015663          228 LNLLKGLNISHNNLTG----DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP  294 (403)
Q Consensus       228 l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip  294 (403)
                      ...++.++++++.+++    .+|..+..+++|+.|++++|+++...+..+..+++|++|++++|++++..|
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            4556677777776664    355666777777777777777773333335677777777777777776544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.8e-28  Score=223.64  Aligned_cols=246  Identities=17%  Similarity=0.201  Sum_probs=201.2

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      +++++|++++|.++++++..+.++..|        ++|++++|.+++..|..|+++++|++|++++|+++ .+|..+.  
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L--------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--  122 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHL--------YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--  122 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTC--------CEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCC--------cEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--
Confidence            689999999999999988777777666        99999999999888999999999999999999999 6776655  


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccC--cCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG--PIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  164 (403)
                      ++|++|++++|.+++..+..+..+++|++|++++|.++.  ..+..+  ..+ +|++|++++|.+++... ....+   |
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~l~~l~~-~~~~~---L  195 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAKLTGIPK-DLPET---L  195 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSBCSSCCS-SSCSS---C
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCCCCCccCc-cccCC---C
Confidence            899999999999998777789999999999999999853  445444  566 99999999999987433 32333   3


Q ss_pred             cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD  244 (403)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  244 (403)
                      +.+......                   +.......+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .
T Consensus       196 ~~L~l~~n~-------------------i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  255 (332)
T 2ft3_A          196 NELHLDHNK-------------------IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R  255 (332)
T ss_dssp             SCCBCCSSC-------------------CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred             CEEECCCCc-------------------CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence            333221111                   11222233445789999999999999888888999999999999999999 8


Q ss_pred             cCccccCCCCCCEEeccCCcCCCCCCccccCC------CCCCEEeCcCCcCc
Q 015663          245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL------KYLSVLNLSYNQFE  290 (403)
Q Consensus       245 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l------~~L~~L~L~~N~l~  290 (403)
                      +|..+..+++|+.|++++|++++..+..+...      ..|+.+++++|++.
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            88889999999999999999998777777653      67899999999987

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=1e-27  Score=232.36  Aligned_cols=288  Identities=20%  Similarity=0.260  Sum_probs=145.7

Q ss_pred             CCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015663            6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN   73 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n   73 (403)
                      +++|++|++++|.+++.++ ..+++|+.|++++|           ++|++|++++|.+++. +. +..+++|++|++++|
T Consensus        67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n  144 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSN  144 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEE
T ss_pred             hcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCC
Confidence            5666667777666666654 55566666666665           5666666666666643 22 566666666666666


Q ss_pred             cCcCCCCc--------------------cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCc
Q 015663           74 RLEGPLPP--------------------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTI  133 (403)
Q Consensus        74 ~l~~~~p~--------------------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  133 (403)
                      ++++ ++.                    .+.++++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+    +
T Consensus       145 ~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~  217 (466)
T 1o6v_A          145 TISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP----L  217 (466)
T ss_dssp             EECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----G
T ss_pred             ccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc----c
Confidence            6553 221                    123333444444444444331  123344444444444444433222    1


Q ss_pred             cCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch-hhhhhcccceEEEc
Q 015663          134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTIDL  212 (403)
Q Consensus       134 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~L  212 (403)
                      ..+++|++|++++|.+++..   .+..++.|+.+...........+......+..+....+.+.. .....++.|+.|++
T Consensus       218 ~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  294 (466)
T 1o6v_A          218 GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL  294 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccCCCCEEECCCCCcccch---hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEc
Confidence            33444444444444444321   122333333333222211111111111112222222111111 11334566666666


Q ss_pred             ccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015663          213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP  292 (403)
Q Consensus       213 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  292 (403)
                      ++|.+++..+  +..+++|+.|++++|++++..|  +..+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence            6666664333  5566677777777777765444  56667777777777777643  3566777777777777777766


Q ss_pred             CCCCCCCCCCCCCcCCCCCC
Q 015663          293 IPRGSQFNTFPNDSYVGNSG  312 (403)
Q Consensus       293 ip~~~~~~~~~~~~~~gn~~  312 (403)
                      .| ...+..+..+.+.+|+.
T Consensus       369 ~~-~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          369 TP-LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             GG-GTTCTTCCEEECCCEEE
T ss_pred             ch-hhcCCCCCEEeccCCcc
Confidence            65 33445555555555543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.5e-28  Score=222.57  Aligned_cols=237  Identities=19%  Similarity=0.165  Sum_probs=200.2

Q ss_pred             CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc-CcCCCCcccc
Q 015663            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLV   84 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~   84 (403)
                      .++|++|++++|.++++++..+.++..|        ++|++++|.+++..|..|..+++|++|++++|+ ++...|..|.
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~  102 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNL--------TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH  102 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTC--------CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCC--------CEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence            3589999999999999887777777665        999999999998889999999999999999997 8866688899


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  164 (403)
                      ++++|++|++++|.+++..|..+..+++|++|++++|++++..+..+  ..+++|++|++++|.+++..+..        
T Consensus       103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~--------  172 (285)
T 1ozn_A          103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERA--------  172 (285)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTT--------
T ss_pred             CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccccCHHH--------
Confidence            99999999999999999888899999999999999999977665545  88999999999999998654322        


Q ss_pred             cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD  244 (403)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  244 (403)
                                                          +..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus       173 ------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          173 ------------------------------------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             ------------------------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ------------------------------------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence                                                12267899999999999999899999999999999999999977


Q ss_pred             cCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCC
Q 015663          245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS  297 (403)
Q Consensus       245 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~  297 (403)
                      .+..+..+++|+.|++++|.+....+.. .....++.+..+.+.+.+..|+..
T Consensus       217 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          217 PTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             CHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence            6677999999999999999998654321 111234455567788887777653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=3.7e-30  Score=236.22  Aligned_cols=237  Identities=20%  Similarity=0.199  Sum_probs=137.8

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------------------CCCCEEECcCCcCcccCCccc--cCCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------------------LTHKVLDMRMNNFNGKIPRKF--VKSC   63 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------------------~~L~~L~Ls~n~l~~~~p~~~--~~l~   63 (403)
                      ++|+.|++++|.+ .++......|+.|++++|                     ++|++|++++|.+++.+|..+  ..++
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  121 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP  121 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred             CCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence            4577778888888 332211112444433333                     345556666666655555544  5555


Q ss_pred             CcCEEEccCCcCcCCCCccccCC-----CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcC--CCCCCccCC
Q 015663           64 NLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPI--GENTTIVPF  136 (403)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l  136 (403)
                      +|++|++++|++++. |..+.++     ++|++|++++|++++..|..+..+++|++|++++|++.+.+  +..+.+..+
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            666666666665543 5555444     55666666666665555555555666666666666544331  111112445


Q ss_pred             CCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCc
Q 015663          137 PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK  216 (403)
Q Consensus       137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  216 (403)
                      ++|++|++++|.+++...                                         +....+..+++|+.|++++|.
T Consensus       201 ~~L~~L~L~~N~l~~~~~-----------------------------------------~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSG-----------------------------------------VCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             TTCCEEECTTSCCCCHHH-----------------------------------------HHHHHHHTTCCCSEEECTTSC
T ss_pred             CCCCEEECCCCcCcchHH-----------------------------------------HHHHHHhcCCCCCEEECCCCc
Confidence            556666666655542110                                         001112235677778888888


Q ss_pred             ccccCC-cccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc
Q 015663          217 FQGGIP-EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG  291 (403)
Q Consensus       217 l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  291 (403)
                      +++..| ..+..+++|++|+|++|+++ .+|..+.  ++|+.||+++|++++. |. +..+++|++|++++|++++
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            776664 34556777888888888877 6666655  6778888888887755 54 7777778888888887764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=5.4e-28  Score=239.14  Aligned_cols=281  Identities=19%  Similarity=0.161  Sum_probs=205.9

Q ss_pred             CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccC
Q 015663            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNG   72 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~   72 (403)
                      ++.....|.+++.++.+++...++|+.|++++|             ++|++|++++|.+++..|++|+++++|++|++++
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   83 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD   83 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCCCceEECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence            445556799999999988777789999999999             7899999999999988889999999999999999


Q ss_pred             CcCcCCCCccccCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCC-CCCccCCCCccEEEccCCccc
Q 015663           73 NRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGE-NTTIVPFPSLRIIDLSHNEFT  150 (403)
Q Consensus        73 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~  150 (403)
                      |++++..|..|+++++|++|++++|.+++. .|..+..+++|++|++++|.+.+.++. .+  ..+++|++|++++|.++
T Consensus        84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF--AGLTSLNELEIKALSLR  161 (549)
T ss_dssp             SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCC
T ss_pred             CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh--hcccccCeeeccCCccc
Confidence            999977766799999999999999999873 567899999999999999986566653 44  88999999999999998


Q ss_pred             cccchhhhhhh------------------------hhhcccCCCcccccccC--CCC-----------------------
Q 015663          151 GVLLTGYLDNF------------------------KAMMHGNNISVEVDYMT--PLN-----------------------  181 (403)
Q Consensus       151 ~~~~~~~~~~l------------------------~~L~~~~~~~~~~~~~~--~~~-----------------------  181 (403)
                      +..+.. +..+                        +.|+.+...........  +..                       
T Consensus       162 ~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          162 NYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             EECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             ccChhh-hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence            866544 2222                        22222221111100000  000                       


Q ss_pred             --------------------------------------CCCc-----------------------------ceEEEEEE-
Q 015663          182 --------------------------------------SSNY-----------------------------YESIILTI-  193 (403)
Q Consensus       182 --------------------------------------~~~~-----------------------------~~~~~~~~-  193 (403)
                                                            ....                             +..+.... 
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n  320 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS  320 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred             HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence                                                  0000                             00011110 


Q ss_pred             --eccchhhhhhcccceEEEcccCcccccCC---cccCCCCCCCEEEecCCCCCCCcC--ccccCCCCCCEEeccCCcCC
Q 015663          194 --KGIDIKMERILTIFMTIDLSSNKFQGGIP---EVVGKLNLLKGLNISHNNLTGDIP--SSLRNLTEVESLDLSSNMLV  266 (403)
Q Consensus       194 --~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~  266 (403)
                        ..++...+..+++|+.|++++|.+++.+|   ..++.+++|++|++++|++++..+  ..+..+++|+.|++++|+++
T Consensus       321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence              01122233457888888888888887654   346778888888888888874322  45778888888888888888


Q ss_pred             CCCCccccCCCCCCEEeCcCCcCc
Q 015663          267 GHIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       267 ~~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                       .+|..+..+++|++|++++|.++
T Consensus       401 -~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          401 -PMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             -CCCSCCCCCTTCCEEECTTSCCS
T ss_pred             -cCChhhcccccccEEECCCCCcc
Confidence             67777888888888888888876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=1.9e-26  Score=222.11  Aligned_cols=248  Identities=23%  Similarity=0.178  Sum_probs=182.5

Q ss_pred             CCCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015663            5 GIATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN   73 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n   73 (403)
                      .+++|++|++++|.+++.+. ..+++|+.|++++|          ++|++|++++|.+++. |  ++++++|++|++++|
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSS
T ss_pred             HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCC
Confidence            46899999999999998754 66788888888887          6888888888888864 3  788888888888888


Q ss_pred             cCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccccc
Q 015663           74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (403)
Q Consensus        74 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  153 (403)
                      ++++ +|  ++++++|++|++++|.+++. +  ++.+++|++|++++|...+.++    +..+++|++|++++|.+++..
T Consensus       117 ~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          117 KLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             CCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSCCCCCC
T ss_pred             cCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCccceec
Confidence            8885 44  78888888888888888873 3  7788888888888886655552    367888888898888888753


Q ss_pred             chhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCE
Q 015663          154 LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKG  233 (403)
Q Consensus       154 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  233 (403)
                          +..++.|+.+.........                      .....+++|+.|++++|++++ +|  +..+++|+.
T Consensus       187 ----l~~l~~L~~L~l~~N~l~~----------------------~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~  237 (457)
T 3bz5_A          187 ----VSQNKLLNRLNCDTNNITK----------------------LDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTY  237 (457)
T ss_dssp             ----CTTCTTCCEEECCSSCCSC----------------------CCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred             ----cccCCCCCEEECcCCcCCe----------------------eccccCCCCCEEECcCCcccc-cC--ccccCCCCE
Confidence                3334444443332111111                      012347889999999999986 55  778899999


Q ss_pred             EEecCCCCCCCcCccccCCC-------CCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663          234 LNISHNNLTGDIPSSLRNLT-------EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG  296 (403)
Q Consensus       234 L~L~~n~l~~~~p~~~~~l~-------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~  296 (403)
                      |++++|++++..+..+.++.       +|+.|++++|++.+.+|  +..+++|+.|++++|...+.+|..
T Consensus       238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~  305 (457)
T 3bz5_A          238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ  305 (457)
T ss_dssp             EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT
T ss_pred             EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC
Confidence            99999999876544444443       45556666666555555  467889999999999888877753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=1.9e-26  Score=231.80  Aligned_cols=285  Identities=22%  Similarity=0.222  Sum_probs=201.5

Q ss_pred             CccEEECCCCCCCCcCC---CCCCCCCeEeCCCC-------------CCCCEEECcCCcCcccCCccccCCCCcCEEEcc
Q 015663            8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN-------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN   71 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~   71 (403)
                      ++++|||++|.|+++++   ..+++|+.|+|++|             ++|++|+|++|.+++..++.|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            68888888888888876   45677888888887             678888888888887667778888888888888


Q ss_pred             CCcCcCCCCccccCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCCC--------------------
Q 015663           72 GNRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGEN--------------------  130 (403)
Q Consensus        72 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~--------------------  130 (403)
                      +|++++..+..|+++++|++|++++|.++.. .|..+..+++|++|++++|++++..+..                    
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            8888866666788888888888888888653 4677777888888888777553211000                    


Q ss_pred             --------------------------------------------------------------------------------
Q 015663          131 --------------------------------------------------------------------------------  130 (403)
Q Consensus       131 --------------------------------------------------------------------------------  130 (403)
                                                                                                      
T Consensus       213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~  292 (635)
T 4g8a_A          213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  292 (635)
T ss_dssp             CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred             ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------------------------CCccCCCC
Q 015663          131 ------------------------------------------------------------------------TTIVPFPS  138 (403)
Q Consensus       131 ------------------------------------------------------------------------~~~~~l~~  138 (403)
                                                                                              .....+++
T Consensus       293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~  372 (635)
T 4g8a_A          293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS  372 (635)
T ss_dssp             SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred             ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence                                                                                    00012456


Q ss_pred             ccEEEccCCcccccc--chh----------------------hhhhhhhhcccCCCcccccc------cCCC--------
Q 015663          139 LRIIDLSHNEFTGVL--LTG----------------------YLDNFKAMMHGNNISVEVDY------MTPL--------  180 (403)
Q Consensus       139 L~~L~l~~n~l~~~~--~~~----------------------~~~~l~~L~~~~~~~~~~~~------~~~~--------  180 (403)
                      |+.+++++|.+....  +..                      .+..+..+..+.........      +...        
T Consensus       373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l  452 (635)
T 4g8a_A          373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  452 (635)
T ss_dssp             CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred             cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            778888887764321  100                      01122333222221110000      0000        


Q ss_pred             -------------CCCCcceEEEEEE----eccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCC
Q 015663          181 -------------NSSNYYESIILTI----KGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (403)
Q Consensus       181 -------------~~~~~~~~~~~~~----~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  243 (403)
                                   ........+....    ....+..+..+++|+.|+|++|++++..|..|.++++|++|+|++|++++
T Consensus       453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~  532 (635)
T 4g8a_A          453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  532 (635)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred             cccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence                         0011122222211    12233455668999999999999999999999999999999999999998


Q ss_pred             CcCccccCCCCCCEEeccCCcCCCCCCccccCC-CCCCEEeCcCCcCccC
Q 015663          244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL-KYLSVLNLSYNQFEGP  292 (403)
Q Consensus       244 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~  292 (403)
                      ..|..|.++++|++|||++|++++..|..+..+ ++|+.|++++|++++.
T Consensus       533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            888899999999999999999999999999988 6899999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=6.5e-27  Score=226.62  Aligned_cols=286  Identities=22%  Similarity=0.221  Sum_probs=158.4

Q ss_pred             CCCccEEECCCCCCCCcCC-CCCCCCCeEeCCCC-----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCC
Q 015663            6 IATLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN-----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN   73 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n-----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n   73 (403)
                      +++++.|+++++.++..+. ..+++|+.|++++|           ++|++|++++|.+++..+  +.++++|++|++++|
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN  122 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC
Confidence            5689999999999988765 67889999999988           689999999999985544  889999999999999


Q ss_pred             cCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc---------------------ccccccCcCCCCCC
Q 015663           74 RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL---------------------RSNRFWGPIGENTT  132 (403)
Q Consensus        74 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l---------------------~~n~l~~~~~~~~~  132 (403)
                      ++++ ++. +.++++|++|++++|.+.+. + .+..+++|+.|++                     ++|.+.+. +   .
T Consensus       123 ~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~  194 (466)
T 1o6v_A          123 QITD-IDP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S---V  194 (466)
T ss_dssp             CCCC-CGG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G---G
T ss_pred             CCCC-ChH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h---h
Confidence            9984 444 88999999999999988773 3 2455555555544                     44443221 1   1


Q ss_pred             ccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch-hhhhhcccceEEE
Q 015663          133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI-KMERILTIFMTID  211 (403)
Q Consensus       133 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~  211 (403)
                      +..+++|++|++++|.+++..+   +..++.|+.+.........+........+..+....+.+.. .....+++|+.|+
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  271 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  271 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEE
Confidence            2344444444444444444333   12222222222211111111111111111111111111110 0123345555555


Q ss_pred             cccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc
Q 015663          212 LSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG  291 (403)
Q Consensus       212 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  291 (403)
                      +++|.+++..+  +..+++|+.|++++|++++..+  ++.+++|+.|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       272 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          272 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             CCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            55555553322  4455555555555555553322  4555556666666665554433  4555566666666666553


Q ss_pred             CCCCCCCCCCCCCCcCCCCC
Q 015663          292 PIPRGSQFNTFPNDSYVGNS  311 (403)
Q Consensus       292 ~ip~~~~~~~~~~~~~~gn~  311 (403)
                      . +....+..+..+.+.+|.
T Consensus       346 ~-~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          346 V-SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             C-GGGTTCTTCCEEECCSSC
T ss_pred             c-hhhccCCCCCEEeCCCCc
Confidence            2 322333344444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.9e-28  Score=226.11  Aligned_cols=257  Identities=17%  Similarity=0.213  Sum_probs=168.1

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ++|++|++++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            58999999999999777778999999999999999999877888999999999999999999866666899999999999


Q ss_pred             ccccccCcCCCCCCccCCCCccEEEccCCc-cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccc
Q 015663          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNE-FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID  197 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (403)
                      ++|++++ ++....+..+++|++|++++|. +.+..+.. +..++.|+.+......                   +....
T Consensus       132 ~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-------------------l~~~~  190 (353)
T 2z80_A          132 LGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEIDASD-------------------LQSYE  190 (353)
T ss_dssp             TTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETT-------------------CCEEC
T ss_pred             CCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECCCCC-------------------cCccC
Confidence            9999865 4441123789999999999984 55443322 3333333222210000                   00111


Q ss_pred             hhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccc---cCCCCCCEEeccCCcCCC----CCC
Q 015663          198 IKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL---RNLTEVESLDLSSNMLVG----HIP  270 (403)
Q Consensus       198 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~Ls~n~l~~----~~p  270 (403)
                      +..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+   .....++.++++++.+++    .+|
T Consensus       191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence            1122224445555555555442222222334455555555555543322221   123344455555544443    245


Q ss_pred             ccccCCCCCCEEeCcCCcCccCCCCCC--CCCCCCCCcCCCCCCCCCCC
Q 015663          271 TQLTSLKYLSVLNLSYNQFEGPIPRGS--QFNTFPNDSYVGNSGLCGFP  317 (403)
Q Consensus       271 ~~~~~l~~L~~L~L~~N~l~~~ip~~~--~~~~~~~~~~~gn~~lc~~~  317 (403)
                      ..+..+++|+.|++++|+++ .+|...  .+..+..+.+.+|+..|..|
T Consensus       271 ~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          271 KLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            66788999999999999999 677653  45667777888888777543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=4.2e-26  Score=219.71  Aligned_cols=264  Identities=20%  Similarity=0.154  Sum_probs=204.6

Q ss_pred             CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC----------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc
Q 015663            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN----------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR   74 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~   74 (403)
                      .+++|++|++++|.+++++-..+++|+.|++++|          ++|++|++++|.+++ +|  ++.+++|++|++++|+
T Consensus        62 ~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~  138 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNT  138 (457)
T ss_dssp             GCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSC
T ss_pred             ccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCc
Confidence            5789999999999999986688999999999998          799999999999996 44  8899999999999999


Q ss_pred             CcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663           75 LEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (403)
Q Consensus        75 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  154 (403)
                      +++ ++  ++++++|++|++++|...+.+  .+..+++|++|++++|++++ +|  +  ..+++|+.|++++|.+++.. 
T Consensus       139 l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l--~~l~~L~~L~l~~N~l~~~~-  207 (457)
T 3bz5_A          139 LTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--V--SQNKLLNRLNCDTNNITKLD-  207 (457)
T ss_dssp             CSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--C--TTCTTCCEEECCSSCCSCCC-
T ss_pred             cce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--c--ccCCCCCEEECcCCcCCeec-
Confidence            996 43  889999999999999655544  47889999999999999976 34  3  78899999999999998762 


Q ss_pred             hhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCC-----
Q 015663          155 TGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN-----  229 (403)
Q Consensus       155 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~-----  229 (403)
                         +..++.|+.+.........                   ++   ...+++|+.|++++|++++..+..+..+.     
T Consensus       208 ---l~~l~~L~~L~Ls~N~l~~-------------------ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~  262 (457)
T 3bz5_A          208 ---LNQNIQLTFLDCSSNKLTE-------------------ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCI  262 (457)
T ss_dssp             ---CTTCTTCSEEECCSSCCSC-------------------CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred             ---cccCCCCCEEECcCCcccc-------------------cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence               4445555554442221111                   11   23478999999999999987655554443     


Q ss_pred             --CCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCc--------cccCCCCCCEEeCcCCcCccCCCCCCCC
Q 015663          230 --LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT--------QLTSLKYLSVLNLSYNQFEGPIPRGSQF  299 (403)
Q Consensus       230 --~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--------~~~~l~~L~~L~L~~N~l~~~ip~~~~~  299 (403)
                        +|+.|++++|.+.+.+|  ++.+++|+.|++++|+..+.+|.        .+..+++|+.|++++|++++ +| -...
T Consensus       263 ~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~-l~~l  338 (457)
T 3bz5_A          263 QTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD-VSHN  338 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC-CTTC
T ss_pred             CCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc-cccC
Confidence              45566666666666665  46789999999999987666553        25677899999999999997 44 3345


Q ss_pred             CCCCCCcCCCCC
Q 015663          300 NTFPNDSYVGNS  311 (403)
Q Consensus       300 ~~~~~~~~~gn~  311 (403)
                      ..+..+.+.+|.
T Consensus       339 ~~L~~L~l~~N~  350 (457)
T 3bz5_A          339 TKLKSLSCVNAH  350 (457)
T ss_dssp             TTCSEEECCSSC
T ss_pred             CcCcEEECCCCC
Confidence            556666666664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.7e-26  Score=208.04  Aligned_cols=209  Identities=21%  Similarity=0.177  Sum_probs=174.3

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  119 (403)
                      +|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45888999999997777789999999999999999997777789999999999999999999888889999999999999


Q ss_pred             cccccCcCCCCCCccCCCCccEEEccCCcccccc-chhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-LTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI  198 (403)
Q Consensus       120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (403)
                      +|.+.+..+..+  ..+++|++|++++|.+++.. +..                                          
T Consensus       109 ~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~------------------------------------------  144 (276)
T 2z62_A          109 ETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY------------------------------------------  144 (276)
T ss_dssp             TSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG------------------------------------------
T ss_pred             CCCccccCchhc--ccCCCCCEEECcCCccceecCchh------------------------------------------
Confidence            999877665554  88999999999999987642 322                                          


Q ss_pred             hhhhhcccceEEEcccCcccccCCcccCCCCCCC----EEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCcccc
Q 015663          199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLK----GLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLT  274 (403)
Q Consensus       199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  274 (403)
                        +..+++|+.|++++|++++..+..+..+++|+    .|++++|.+++..+..+ ...+|+.|++++|++++..+..+.
T Consensus       145 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          145 --FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             --GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTT
T ss_pred             --hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhc
Confidence              12267899999999999987777777776666    89999999985544444 445899999999999977777788


Q ss_pred             CCCCCCEEeCcCCcCccCCCC
Q 015663          275 SLKYLSVLNLSYNQFEGPIPR  295 (403)
Q Consensus       275 ~l~~L~~L~L~~N~l~~~ip~  295 (403)
                      .+++|+.|++++|++++..|.
T Consensus       222 ~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             TCCSCCEEECCSSCBCCCTTT
T ss_pred             ccccccEEEccCCcccccCCc
Confidence            999999999999999876654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.4e-25  Score=201.31  Aligned_cols=204  Identities=21%  Similarity=0.245  Sum_probs=140.1

Q ss_pred             CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      .+.++++++.++ .+|..+.  +++++|++++|++++..+..|.++++|++|++++|.++...+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            355666666666 4554443  3566666666666654445666666666666666666664445556666666666666


Q ss_pred             ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhh
Q 015663          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM  200 (403)
Q Consensus       121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (403)
                      |++.+..+..+  ..+++|++|++++|.+++..+..                                            
T Consensus        95 n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~--------------------------------------------  128 (270)
T 2o6q_A           95 NKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRV--------------------------------------------  128 (270)
T ss_dssp             SCCCCCCTTTT--TTCSSCCEEECCSSCCCCCCTTT--------------------------------------------
T ss_pred             CcCCcCCHhHc--ccccCCCEEECCCCccCeeCHHH--------------------------------------------
Confidence            66654444333  56667777777777666543322                                            


Q ss_pred             hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCC
Q 015663          201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS  280 (403)
Q Consensus       201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  280 (403)
                      +..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence            11256677777777777766666678888899999999988876667788888999999999998876677788888999


Q ss_pred             EEeCcCCcCccCC
Q 015663          281 VLNLSYNQFEGPI  293 (403)
Q Consensus       281 ~L~L~~N~l~~~i  293 (403)
                      .|++++|++.+..
T Consensus       209 ~L~l~~N~~~c~c  221 (270)
T 2o6q_A          209 MLQLQENPWDCTC  221 (270)
T ss_dssp             EEECCSSCBCCSS
T ss_pred             EEEecCCCeeCCC
Confidence            9999999887543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.4e-27  Score=215.62  Aligned_cols=217  Identities=22%  Similarity=0.195  Sum_probs=133.5

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      ++|++|+|++|.+++.++..+.++..|        ++|++++|.+++..|  |..+++|++|++++|++++ ++    ..
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L--------~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~   98 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKL--------ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VG   98 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTC--------CEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----EC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcC--------CEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CC
Confidence            456666666666665544333333333        666666666654333  6666666666666666652 22    23


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  166 (403)
                      ++|++|++++|.+++..+.   .+++|++|++++|++++..+..+  ..+++|++|++++|.+++..+..+.        
T Consensus        99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~--------  165 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELA--------  165 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEEECTTSCCCEEEGGGGG--------
T ss_pred             CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhh--hccCCCCEEECCCCCCCcccHHHHh--------
Confidence            5666666666666654332   24556666666666655444433  5566666666666666654333221        


Q ss_pred             cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015663          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP  246 (403)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  246 (403)
                                                         ..+++|+.|++++|.+++. +. ...+++|++|++++|+++ .+|
T Consensus       166 -----------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~  207 (317)
T 3o53_A          166 -----------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMG  207 (317)
T ss_dssp             -----------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EEC
T ss_pred             -----------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cch
Confidence                                               1256677788888877744 32 234777888888888877 455


Q ss_pred             ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663          247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      ..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus       208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            55777788888888888777 45666777778888888888776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=3.6e-25  Score=213.05  Aligned_cols=260  Identities=25%  Similarity=0.312  Sum_probs=148.6

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG   77 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~   77 (403)
                      ++|++|++++|.++++ |..+++|+.|++++|         ++|++|++++|.+++ +| +|+++++|++|++++|++++
T Consensus        91 ~~L~~L~l~~n~l~~l-p~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~  167 (454)
T 1jl5_A           91 PHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK  167 (454)
T ss_dssp             TTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred             CCCCEEEccCCcCCcc-ccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence            5688888888888874 445678888888888         578889999988885 66 58888888999988888884


Q ss_pred             CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhh
Q 015663           78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY  157 (403)
Q Consensus        78 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  157 (403)
                       +|..+   ++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..     .++|++|++++|.++.. +.  
T Consensus       168 -lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~l~~n~l~~l-p~--  232 (454)
T 1jl5_A          168 -LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL-----PLSLESIVAGNNILEEL-PE--  232 (454)
T ss_dssp             -CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC-----CTTCCEEECCSSCCSSC-CC--
T ss_pred             -cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC-----cCcccEEECcCCcCCcc-cc--
Confidence             66543   478888888888877 55 57778888888888887754 3321     23666666666666532 21  


Q ss_pred             hhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccc--cCCcc-----------
Q 015663          158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG--GIPEV-----------  224 (403)
Q Consensus       158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~-----------  224 (403)
                      +..++.|+.+.........+...  ...+..+....+.+.. ++..+++|+.|++++|.+++  ..|..           
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI  309 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred             cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence            33444444444322222111110  0111111111111110 11112445555555555443  11110           


Q ss_pred             --cCCC-CCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCcc--CCCC
Q 015663          225 --VGKL-NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG--PIPR  295 (403)
Q Consensus       225 --~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~ip~  295 (403)
                        +..+ ++|++|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|.
T Consensus       310 ~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~  377 (454)
T 1jl5_A          310 RSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE  377 (454)
T ss_dssp             SEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred             CcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence              1111 355566666666553 4432   355666666666665 3443   24556666666666665  4444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.2e-26  Score=225.48  Aligned_cols=217  Identities=22%  Similarity=0.187  Sum_probs=141.1

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      ++|++|+|++|.+++.+|..+.++..|        ++|+|++|.+++..|  |..+++|++|++++|.+++ +|    ..
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~   98 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKL--------ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VG   98 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTC--------CEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----EC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCC--------CEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CC
Confidence            366777777777776655444444444        666777777665444  6667777777777777663 22    22


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  166 (403)
                      ++|++|++++|.+++..+.   .+++|+.|++++|.+++..|..+  ..+++|++|++++|.+++..+..+..       
T Consensus        99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~-------  166 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA-------  166 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGG-------
T ss_pred             CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhh-------
Confidence            6677777777777664432   34667777777777766555544  56677777777777776654433211       


Q ss_pred             cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015663          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP  246 (403)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  246 (403)
                                                          .++.|+.|+|++|.+++..+  ...+++|+.|+|++|.+++ +|
T Consensus       167 ------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~  207 (487)
T 3oja_A          167 ------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MG  207 (487)
T ss_dssp             ------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-EC
T ss_pred             ------------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CC
Confidence                                                25667777888887775522  2357777888888887774 44


Q ss_pred             ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663          247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      ..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.
T Consensus       208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            457777778888888887774 5666777777888888877776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=3.5e-25  Score=213.09  Aligned_cols=259  Identities=22%  Similarity=0.282  Sum_probs=124.8

Q ss_pred             CccEEECCCCCCCCcCC-CCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcC
Q 015663            8 TLYYLDLSNNFLTNIEY-FPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG   77 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~-~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~   77 (403)
                      +|++|++++|.+++++. ..+++|+.|++++|         .+|++|++++|.+++ +| .++++++|++|++++|++++
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            44444444444444322 33444555555544         245555555555543 33 34555555555555555552


Q ss_pred             CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhh
Q 015663           78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY  157 (403)
Q Consensus        78 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  157 (403)
                       +|...   ++|++|++++|.++. +| .+..+++|++|++++|++++ +|.     .+++|+.|++++|.+++... . 
T Consensus       210 -l~~~~---~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~~l~~-~-  275 (454)
T 1jl5_A          210 -LPDLP---LSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLTDLPE-L-  275 (454)
T ss_dssp             -CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCSCCCC-C-
T ss_pred             -CCCCc---CcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCcccccCc-c-
Confidence             33221   345555555555543 34 24555555555555555543 221     12455555555555554211 1 


Q ss_pred             hhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEec
Q 015663          158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS  237 (403)
Q Consensus       158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  237 (403)
                      ..   .|+.+.........+....  ..+..+....+.+.. +....++|+.|++++|++++ +|..   +++|+.|+++
T Consensus       276 ~~---~L~~L~ls~N~l~~l~~~~--~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~  345 (454)
T 1jl5_A          276 PQ---SLTFLDVSENIFSGLSELP--PNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS  345 (454)
T ss_dssp             CT---TCCEEECCSSCCSEESCCC--TTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred             cC---cCCEEECcCCccCcccCcC--CcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence            11   2222222111111111100  111222221111111 11223589999999999995 6654   5899999999


Q ss_pred             CCCCCCCcCccccCCCCCCEEeccCCcCCC--CCCccccCC-------------CCCCEEeCcCCcCcc--CCCCC
Q 015663          238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVG--HIPTQLTSL-------------KYLSVLNLSYNQFEG--PIPRG  296 (403)
Q Consensus       238 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l-------------~~L~~L~L~~N~l~~--~ip~~  296 (403)
                      +|+++ .+|.   .+++|++|++++|++++  .+|..+..+             ++|+.|++++|++++  .+|..
T Consensus       346 ~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          346 FNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             SSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred             CCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence            99999 5676   47899999999999998  788888777             889999999999997  77765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=1.1e-25  Score=202.68  Aligned_cols=211  Identities=20%  Similarity=0.182  Sum_probs=176.3

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      ++|++|++++|.++++.+..+.++..|        ++|++++|.+++..+..|.++++|++|++++|++++..+..|.++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPEL--------QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTC--------SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CCccEEECCCCcccccCHhHhccccCC--------cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence            358999999999998877666666655        999999999998788899999999999999999998888889999


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCc-CCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhc
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM  165 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  165 (403)
                      ++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+  ..+++|++|++++|.+++..+.. +..+..  
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~--  174 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTD-LRVLHQ--  174 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECGGG-GHHHHT--
T ss_pred             ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCHHH-hhhhhh--
Confidence            9999999999999997777899999999999999999763 46655  88999999999999998765543 222222  


Q ss_pred             ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccce-EEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663          166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD  244 (403)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  244 (403)
                                                            ++.+. .|++++|.+++..+..+. ..+|++|++++|++++.
T Consensus       175 --------------------------------------L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~  215 (276)
T 2z62_A          175 --------------------------------------MPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSV  215 (276)
T ss_dssp             --------------------------------------CTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCC
T ss_pred             --------------------------------------ccccceeeecCCCcccccCccccC-CCcccEEECCCCceeec
Confidence                                                  22233 799999999966666554 45899999999999977


Q ss_pred             cCccccCCCCCCEEeccCCcCCCCC
Q 015663          245 IPSSLRNLTEVESLDLSSNMLVGHI  269 (403)
Q Consensus       245 ~p~~~~~l~~L~~L~Ls~n~l~~~~  269 (403)
                      .+..+..+++|+.|++++|++.+..
T Consensus       216 ~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          216 PDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CHhHhcccccccEEEccCCcccccC
Confidence            6777899999999999999998543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.6e-26  Score=224.50  Aligned_cols=218  Identities=21%  Similarity=0.168  Sum_probs=183.1

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ++|++|++++|.+++..|..|..+++|++|+|++|.+++..|  |.++++|++|++++|.+++..+     .++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            356999999999998888999999999999999999996554  8999999999999999987432     389999999


Q ss_pred             ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI  198 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (403)
                      ++|.+++..+.     .+++|+.|++++|.+++..+..+                                         
T Consensus       107 ~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~-----------------------------------------  140 (487)
T 3oja_A          107 ANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE-----------------------------------------  140 (487)
T ss_dssp             CSSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCG-----------------------------------------
T ss_pred             cCCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhh-----------------------------------------
Confidence            99999776553     46889999999999987655331                                         


Q ss_pred             hhhhhcccceEEEcccCcccccCCcccC-CCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCC
Q 015663          199 KMERILTIFMTIDLSSNKFQGGIPEVVG-KLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK  277 (403)
Q Consensus       199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  277 (403)
                         ..+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++. |. ...+++|+.|+|++|++++.+| .+..++
T Consensus       141 ---~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~  214 (487)
T 3oja_A          141 ---GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAA  214 (487)
T ss_dssp             ---GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred             ---cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCC
Confidence               2268899999999999998888876 799999999999999855 33 3468999999999999996555 488999


Q ss_pred             CCCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCCC
Q 015663          278 YLSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCGF  316 (403)
Q Consensus       278 ~L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~~  316 (403)
                      +|+.|++++|.+++ +|.. ..+..+..+.+.+|+..|+.
T Consensus       215 ~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            99999999999996 5554 34566777888999988753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.7e-24  Score=194.33  Aligned_cols=205  Identities=22%  Similarity=0.201  Sum_probs=175.6

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      ...+.++++++.++.++....+           +++.|++++|.+++..+..|.++++|++|++++|+++...+..|.++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIPA-----------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCCT-----------TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCCEEEccCCCCCccCCCCCC-----------CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence            4578999999999987543222           34788999999997777899999999999999999996656667899


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  166 (403)
                      ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++|.+++..+..          
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~----------  152 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGV----------  152 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT----------
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCcCCCEEECCCCcCCccCHhH----------
Confidence            999999999999999777888999999999999999987766655  88999999999999998654322          


Q ss_pred             cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015663          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP  246 (403)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  246 (403)
                                                        +..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus       153 ----------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          153 ----------------------------------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             ----------------------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ----------------------------------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence                                              1226889999999999998777789999999999999999997767


Q ss_pred             ccccCCCCCCEEeccCCcCCCC
Q 015663          247 SSLRNLTEVESLDLSSNMLVGH  268 (403)
Q Consensus       247 ~~~~~l~~L~~L~Ls~n~l~~~  268 (403)
                      ..+..+++|+.|++++|.+...
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          199 GAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCS
T ss_pred             HHhccccCCCEEEecCCCeeCC
Confidence            7789999999999999998754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.6e-27  Score=214.14  Aligned_cols=239  Identities=26%  Similarity=0.356  Sum_probs=187.8

Q ss_pred             CCCCCeEeCCCC---------CCCCEEECcCCcCc-ccCCcccc-------CCCCcCEEEccCCcCcCCCCccc--cCCC
Q 015663           27 PTNMTQLNFDSN---------LTHKVLDMRMNNFN-GKIPRKFV-------KSCNLTSLNLNGNRLEGPLPPSL--VNCH   87 (403)
Q Consensus        27 ~~~L~~L~l~~n---------~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~   87 (403)
                      ..+|+.|++++|         ..|+.|++++|.+. ..+|..+.       ++++|++|++++|++++.+|..+  .+++
T Consensus        42 ~~~L~~l~l~~n~l~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  121 (312)
T 1wwl_A           42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP  121 (312)
T ss_dssp             EEECTTHHHHCCTTCCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred             CCCceeEeecccccccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence            345666666655         23778889999884 56776665       78999999999999998888876  8999


Q ss_pred             CCCEEEccCCcCCcCCChhccCC-----CCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhh
Q 015663           88 HLEVLNVGNNQINDNFPNWLEIL-----PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK  162 (403)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  162 (403)
                      +|++|++++|.+++. |..+..+     ++|++|++++|++.+..+..+  ..+++|++|++++|.+.+..+.  ..   
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~--~~---  193 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPALSTLDLSDNPELGERGL--IS---  193 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSCCEEECCSCTTCHHHHH--HH---
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCCCEEECCCCCcCcchHH--HH---
Confidence            999999999999986 8777776     899999999999987777766  8899999999999997654210  00   


Q ss_pred             hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccc--cCC-cccCCCCCCCEEEecCC
Q 015663          163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG--GIP-EVVGKLNLLKGLNISHN  239 (403)
Q Consensus       163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p-~~~~~l~~L~~L~L~~n  239 (403)
                      .+                                   .+..+++|++|++++|.+++  .++ ..+..+++|++|++++|
T Consensus       194 ~~-----------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          194 AL-----------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             HS-----------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred             HH-----------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence            00                                   01226889999999999983  222 34467899999999999


Q ss_pred             CCCCCcC-ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCC
Q 015663          240 NLTGDIP-SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG  312 (403)
Q Consensus       240 ~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~  312 (403)
                      ++++..| ..+..+++|+.|++++|+++ .+|..+.  ++|++|++++|++++. |....+..+..+.+.+|+.
T Consensus       239 ~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          239 SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred             cCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence            9997765 55677899999999999999 7777766  8999999999999965 6655556666667777753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=6.5e-27  Score=215.09  Aligned_cols=216  Identities=21%  Similarity=0.174  Sum_probs=177.1

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  119 (403)
                      +|++|++++|.+++..|..|..+++|++|++++|++++..+  |..+++|++|++++|.+++..     ..++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence            45889999999998888899999999999999999985443  899999999999999998732     34899999999


Q ss_pred             cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015663          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK  199 (403)
Q Consensus       120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (403)
                      +|++++..+.     .+++|++|++++|.+++..+..+                                          
T Consensus       108 ~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~------------------------------------------  140 (317)
T 3o53_A          108 NNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDE------------------------------------------  140 (317)
T ss_dssp             SSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCT------------------------------------------
T ss_pred             CCccCCcCcc-----ccCCCCEEECCCCCCCCccchhh------------------------------------------
Confidence            9999765543     46789999999999987544321                                          


Q ss_pred             hhhhcccceEEEcccCcccccCCccc-CCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663          200 MERILTIFMTIDLSSNKFQGGIPEVV-GKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  278 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  278 (403)
                        ..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|++++. |..+..+++
T Consensus       141 --~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~  215 (317)
T 3o53_A          141 --GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAG  215 (317)
T ss_dssp             --GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTT
T ss_pred             --hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCc
Confidence              226889999999999998777776 4789999999999999844 43 34589999999999999954 455889999


Q ss_pred             CCEEeCcCCcCccCCCCC-CCCCCCCCCcCCCCCCCCC
Q 015663          279 LSVLNLSYNQFEGPIPRG-SQFNTFPNDSYVGNSGLCG  315 (403)
Q Consensus       279 L~~L~L~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc~  315 (403)
                      |+.|++++|++++ +|.. ..+..+..+.+.+|+..|+
T Consensus       216 L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             ccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCc
Confidence            9999999999994 5654 3455677778888888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=206.08  Aligned_cols=206  Identities=21%  Similarity=0.207  Sum_probs=152.3

Q ss_pred             CCCCEEECcCCcCcccCCccc--cCCCCcCEEEccCCcCcCCCC----ccccCCCCCCEEEccCCcCCcCCChhccCCCC
Q 015663           39 LTHKVLDMRMNNFNGKIPRKF--VKSCNLTSLNLNGNRLEGPLP----PSLVNCHHLEVLNVGNNQINDNFPNWLEILPE  112 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  112 (403)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|++++..+    ..+..+++|++|++++|.+++..|..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            458888888888887777777  778888888888888886554    33456788888888888888777777888888


Q ss_pred             CcEEEcccccccCc--CCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEE
Q 015663          113 LQVLILRSNRFWGP--IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII  190 (403)
Q Consensus       113 L~~L~l~~n~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (403)
                      |++|++++|++.+.  ++....+..+++|++|++++|.++......                                  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----------------------------------  216 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC----------------------------------  216 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH----------------------------------
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH----------------------------------
Confidence            88888888876542  222222256778888888888776321110                                  


Q ss_pred             EEEeccchhhhhhcccceEEEcccCcccccCCcccCCC---CCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCC
Q 015663          191 LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKL---NLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG  267 (403)
Q Consensus       191 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  267 (403)
                             ...+..+++|++|++++|.+++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|+|++|++++
T Consensus       217 -------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          217 -------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             -------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             -------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence                   0012236788889999999988777777666   68999999999998 6777664  789999999999985


Q ss_pred             CCCccccCCCCCCEEeCcCCcCc
Q 015663          268 HIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       268 ~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      . |. +..+++|+.|++++|+++
T Consensus       287 ~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          287 A-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             C-CC-TTSCCCCSCEECSSTTTS
T ss_pred             C-ch-hhhCCCccEEECcCCCCC
Confidence            4 33 577888999999999886

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=3.4e-25  Score=199.07  Aligned_cols=201  Identities=21%  Similarity=0.201  Sum_probs=167.3

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ++|+.|++++|.++ .++ .+..+++|++|++++|++++ + +.+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            45588888888887 333 57889999999999999985 4 47889999999999999999877777889999999999


Q ss_pred             ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI  198 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (403)
                      ++|++++..+..+  ..+++|++|++++|.+++..+..                                          
T Consensus       117 ~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~------------------------------------------  152 (272)
T 3rfs_A          117 VENQLQSLPDGVF--DKLTNLTYLNLAHNQLQSLPKGV------------------------------------------  152 (272)
T ss_dssp             TTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT------------------------------------------
T ss_pred             CCCcCCccCHHHh--ccCCCCCEEECCCCccCccCHHH------------------------------------------
Confidence            9999977666555  78899999999999888654422                                          


Q ss_pred             hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663          199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  278 (403)
Q Consensus       199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  278 (403)
                        +..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.       +++
T Consensus       153 --~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~  223 (272)
T 3rfs_A          153 --FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPG  223 (272)
T ss_dssp             --TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTT
T ss_pred             --hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcH
Confidence              11267889999999999987777788999999999999999987777889999999999999988743       557


Q ss_pred             CCEEeCcCCcCccCCCCC
Q 015663          279 LSVLNLSYNQFEGPIPRG  296 (403)
Q Consensus       279 L~~L~L~~N~l~~~ip~~  296 (403)
                      |+.++++.|.++|.+|..
T Consensus       224 l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             THHHHHHHHHTGGGBBCT
T ss_pred             HHHHHHHHHhCCCcccCc
Confidence            888999999999999876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.6e-24  Score=196.36  Aligned_cols=196  Identities=23%  Similarity=0.258  Sum_probs=101.2

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|.+++..+  ...+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N   87 (290)
T 1p9a_G           13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHN   87 (290)
T ss_dssp             CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSS
T ss_pred             cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCC
Confidence            44444444444 3333332  344455555555544444444455555555555555444222  134445555555555


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (403)
                      +++ .+|..+  ..+++|++|++++|.+++..+..+                                            
T Consensus        88 ~l~-~l~~~~--~~l~~L~~L~l~~N~l~~l~~~~~--------------------------------------------  120 (290)
T 1p9a_G           88 QLQ-SLPLLG--QTLPALTVLDVSFNRLTSLPLGAL--------------------------------------------  120 (290)
T ss_dssp             CCS-SCCCCT--TTCTTCCEEECCSSCCCCCCSSTT--------------------------------------------
T ss_pred             cCC-cCchhh--ccCCCCCEEECCCCcCcccCHHHH--------------------------------------------
Confidence            543 233322  445555555555555543322110                                            


Q ss_pred             hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV  281 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  281 (403)
                      ..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+....+|+.
T Consensus       121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~  199 (290)
T 1p9a_G          121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF  199 (290)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred             cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence            11445555555555555555555566666666666666666444445566666666666666666 45555556666666


Q ss_pred             EeCcCCcCc
Q 015663          282 LNLSYNQFE  290 (403)
Q Consensus       282 L~L~~N~l~  290 (403)
                      +++++|++.
T Consensus       200 l~L~~Np~~  208 (290)
T 1p9a_G          200 AFLHGNPWL  208 (290)
T ss_dssp             EECCSCCBC
T ss_pred             EEeCCCCcc
Confidence            666666665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.6e-24  Score=196.30  Aligned_cols=205  Identities=25%  Similarity=0.284  Sum_probs=173.7

Q ss_pred             cccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCC
Q 015663           58 KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFP  137 (403)
Q Consensus        58 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  137 (403)
                      .+.+++++++++++++.++ .+|..+.  ++++.|++++|.+++..|..|..+++|++|++++|.+++..+.    ..++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCT
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCC
Confidence            4678899999999999999 6777664  6899999999999998889999999999999999999764432    6789


Q ss_pred             CccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcc
Q 015663          138 SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKF  217 (403)
Q Consensus       138 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  217 (403)
                      +|++|++++|.++.... .                                            +..+++|+.|++++|++
T Consensus        78 ~L~~L~Ls~N~l~~l~~-~--------------------------------------------~~~l~~L~~L~l~~N~l  112 (290)
T 1p9a_G           78 VLGTLDLSHNQLQSLPL-L--------------------------------------------GQTLPALTVLDVSFNRL  112 (290)
T ss_dssp             TCCEEECCSSCCSSCCC-C--------------------------------------------TTTCTTCCEEECCSSCC
T ss_pred             cCCEEECCCCcCCcCch-h--------------------------------------------hccCCCCCEEECCCCcC
Confidence            99999999999874321 1                                            11267899999999999


Q ss_pred             cccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCC
Q 015663          218 QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGS  297 (403)
Q Consensus       218 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~  297 (403)
                      ++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+++ .+|...
T Consensus       113 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence            9888889999999999999999999777778899999999999999999777777889999999999999999 667653


Q ss_pred             -CCCCCCCCcCCCCCCCCC
Q 015663          298 -QFNTFPNDSYVGNSGLCG  315 (403)
Q Consensus       298 -~~~~~~~~~~~gn~~lc~  315 (403)
                       ....+....+.+||+.|.
T Consensus       192 ~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTTCCCSEEECCSCCBCCS
T ss_pred             cccccCCeEEeCCCCccCc
Confidence             334455666777777764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.2e-24  Score=212.82  Aligned_cols=253  Identities=20%  Similarity=0.204  Sum_probs=161.5

Q ss_pred             CccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCC
Q 015663            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP   78 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~   78 (403)
                      +++.|++++|.++.++....++|+.|++++|         ++|++|++++|.++ .+|.   .+++|++|++++|+++ .
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~  115 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-H  115 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-C
T ss_pred             CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-C
Confidence            4677777777777665544567777777777         56777777777776 4554   5677777777777777 3


Q ss_pred             CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhh
Q 015663           79 LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYL  158 (403)
Q Consensus        79 ~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  158 (403)
                      +|.   .+++|+.|++++|.++. +|..   +++|++|++++|++++ +|.     .+++|+.|++++|.+++..  ...
T Consensus       116 l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~l~--~~~  180 (622)
T 3g06_A          116 LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA-----LPSELCKLWAYNNQLTSLP--MLP  180 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCCC--CCC
T ss_pred             CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC-----ccCCCCEEECCCCCCCCCc--ccC
Confidence            554   45677777777777776 4432   3677777777777654 222     1245555555555555432  111


Q ss_pred             hhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecC
Q 015663          159 DNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH  238 (403)
Q Consensus       159 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  238 (403)
                         +.|+.+.........+...  ...+..+....+.+. .+...+++|+.|++++|++++ +|   ..+++|+.|+|++
T Consensus       181 ---~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~  250 (622)
T 3g06_A          181 ---SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSG  250 (622)
T ss_dssp             ---TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCS
T ss_pred             ---CCCcEEECCCCCCCCCCCc--cchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCC
Confidence               2222222211111111100  001111111111111 111225789999999999985 55   4568899999999


Q ss_pred             CCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCC
Q 015663          239 NNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPR  295 (403)
Q Consensus       239 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~  295 (403)
                      |.++ .+|.   .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus       251 N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          251 NRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             SCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            9998 5665   5689999999999999 7788899999999999999999887665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=7.2e-25  Score=196.95  Aligned_cols=208  Identities=18%  Similarity=0.140  Sum_probs=175.3

Q ss_pred             CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   84 (403)
                      .+++|+.|++++|.++....  +..+        ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..|.
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~--l~~l--------~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~  106 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQG--IQYL--------PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFD  106 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTT--GGGC--------TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cccceeeeeeCCCCcccccc--cccC--------CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhc
Confidence            35678888888888876532  2222        455899999999985 3 4889999999999999999977777789


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  164 (403)
                      ++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++|.+++..+..        
T Consensus       107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~--------  176 (272)
T 3rfs_A          107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDLSYNQLQSLPEGV--------  176 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT--------
T ss_pred             CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh--ccCccCCEEECCCCCcCccCHHH--------
Confidence            99999999999999999878889999999999999999987666555  78999999999999998655432        


Q ss_pred             cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD  244 (403)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  244 (403)
                                                          +..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus       177 ------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          177 ------------------------------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             ------------------------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ------------------------------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence                                                12267899999999999988888899999999999999998743


Q ss_pred             cCccccCCCCCCEEeccCCcCCCCCCccccCCC
Q 015663          245 IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK  277 (403)
Q Consensus       245 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  277 (403)
                             +++|+.|++..|+++|.+|..++.+.
T Consensus       221 -------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          221 -------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             -------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             -------CcHHHHHHHHHHhCCCcccCcccccC
Confidence                   55789999999999999999887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=5.6e-24  Score=188.82  Aligned_cols=121  Identities=23%  Similarity=0.222  Sum_probs=77.1

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  283 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  283 (403)
                      +++|+.|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus       106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  185 (251)
T 3m19_A          106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT  185 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            44556666666666655555667788888888888888866666788888888888888888877777788888888888


Q ss_pred             CcCCcCccCCCCCCCCCC------CCCCcCCCCCCCCCCCCCCCCCCC
Q 015663          284 LSYNQFEGPIPRGSQFNT------FPNDSYVGNSGLCGFPLLESCNID  325 (403)
Q Consensus       284 L~~N~l~~~ip~~~~~~~------~~~~~~~gn~~lc~~~~~~~C~~~  325 (403)
                      +++|++++.......+..      .......|+ .+|+.|....|..+
T Consensus       186 l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          186 LFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             CCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             eeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            888888765332211100      011112233 35666776777664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=5.6e-24  Score=187.41  Aligned_cols=196  Identities=17%  Similarity=0.173  Sum_probs=130.8

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCc-CcCCCCccccCCCCCCEEEccC-CcCCcCCChhccCCCCCcEEE
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-LEGPLPPSLVNCHHLEVLNVGN-NQINDNFPNWLEILPELQVLI  117 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~  117 (403)
                      ++++|++++|.+++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            34777788888876666677778888888888886 7755555777788888888887 778776666777788888888


Q ss_pred             cccccccCcCCCCCCccCCCCcc---EEEccCC-ccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEE
Q 015663          118 LRSNRFWGPIGENTTIVPFPSLR---IIDLSHN-EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTI  193 (403)
Q Consensus       118 l~~n~l~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (403)
                      +++|++++ +|. +  ..+++|+   +|++++| .+++..+..                                     
T Consensus       112 l~~n~l~~-lp~-~--~~l~~L~~L~~L~l~~N~~l~~i~~~~-------------------------------------  150 (239)
T 2xwt_C          112 IFNTGLKM-FPD-L--TKVYSTDIFFILEITDNPYMTSIPVNA-------------------------------------  150 (239)
T ss_dssp             EEEECCCS-CCC-C--TTCCBCCSEEEEEEESCTTCCEECTTT-------------------------------------
T ss_pred             CCCCCCcc-ccc-c--ccccccccccEEECCCCcchhhcCccc-------------------------------------
Confidence            88887765 444 2  5566665   7777777 666443322                                     


Q ss_pred             eccchhhhhhcccce-EEEcccCcccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCC-CCCCEEeccCCcCCCCCC
Q 015663          194 KGIDIKMERILTIFM-TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNL-TEVESLDLSSNMLVGHIP  270 (403)
Q Consensus       194 ~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~p  270 (403)
                             +..+++|+ .|++++|.++...+..+.. ++|++|++++|+ +++..+..|.++ ++|+.|++++|++++ +|
T Consensus       151 -------~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~  221 (239)
T 2xwt_C          151 -------FQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LP  221 (239)
T ss_dssp             -------TTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CC
T ss_pred             -------ccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CC
Confidence                   11256677 7777777777333333333 677777777774 764445666677 777777777777763 33


Q ss_pred             ccccCCCCCCEEeCcCC
Q 015663          271 TQLTSLKYLSVLNLSYN  287 (403)
Q Consensus       271 ~~~~~l~~L~~L~L~~N  287 (403)
                      ..  .+++|+.|+++++
T Consensus       222 ~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          222 SK--GLEHLKELIARNT  236 (239)
T ss_dssp             CT--TCTTCSEEECTTC
T ss_pred             hh--HhccCceeeccCc
Confidence            32  4566777777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=6.4e-23  Score=181.96  Aligned_cols=178  Identities=20%  Similarity=0.188  Sum_probs=113.5

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      +.++++++.++ .+|..+.  ++++.|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            45555555555 4444433  35566666666666555555666666666666666666555555566666666666666


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (403)
                      ++++..+..+  ..+++|++|++++|.+++..+..                                            +
T Consensus        94 ~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~--------------------------------------------~  127 (251)
T 3m19_A           94 QLASLPLGVF--DHLTQLDKLYLGGNQLKSLPSGV--------------------------------------------F  127 (251)
T ss_dssp             CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT--------------------------------------------T
T ss_pred             cccccChhHh--cccCCCCEEEcCCCcCCCcChhH--------------------------------------------h
Confidence            6654444433  55666666666666665433221                                            1


Q ss_pred             hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCC
Q 015663          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH  268 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  268 (403)
                      ..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus       128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            1155677777777777766666788888888888888888877777788888888888888888765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=2.1e-23  Score=183.66  Aligned_cols=198  Identities=18%  Similarity=0.186  Sum_probs=166.6

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCc-CcccCCccccCCCCcCEEEccC-CcCcCCCCcccc
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNN-FNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLV   84 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~   84 (403)
                      +++++|++++|.++++++..+.++..|        ++|++++|. +++..+..|.++++|++|++++ |++++..+..|.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L--------~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~  102 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNI--------SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK  102 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTC--------CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCC--------cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence            479999999999999888777777665        999999997 8877777999999999999998 999977777899


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCc---EEEcccc-cccCcCCCCCCccCCCCcc-EEEccCCccccccchhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQ---VLILRSN-RFWGPIGENTTIVPFPSLR-IIDLSHNEFTGVLLTGYLD  159 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~  159 (403)
                      ++++|++|++++|.+++ +|. +..+++|+   +|++++| .+++..+..+  ..+++|+ +|++++|.++...+.. + 
T Consensus       103 ~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~~i~~~~-~-  176 (239)
T 2xwt_C          103 ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFTSVQGYA-F-  176 (239)
T ss_dssp             CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCCEECTTT-T-
T ss_pred             CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCcccCHhh-c-
Confidence            99999999999999998 666 88888888   9999999 8866555545  8899999 9999999988443221 1 


Q ss_pred             hhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCc-ccccCCcccCCC-CCCCEEEec
Q 015663          160 NFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKL-NLLKGLNIS  237 (403)
Q Consensus       160 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~L~  237 (403)
                                                                . .++|+.|++++|. +++..+..|..+ ++|+.|+++
T Consensus       177 ------------------------------------------~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          177 ------------------------------------------N-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS  213 (239)
T ss_dssp             ------------------------------------------T-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred             ------------------------------------------C-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence                                                      1 2578999999995 997778889999 999999999


Q ss_pred             CCCCCCCcCccccCCCCCCEEeccCCc
Q 015663          238 HNNLTGDIPSSLRNLTEVESLDLSSNM  264 (403)
Q Consensus       238 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~  264 (403)
                      +|+++ .+|..  .+++|+.|+++++.
T Consensus       214 ~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          214 QTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             CCccc-cCChh--HhccCceeeccCcc
Confidence            99998 45544  67899999998863

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=5.7e-23  Score=187.82  Aligned_cols=191  Identities=19%  Similarity=0.254  Sum_probs=155.9

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ++|+.|++++|.++ .+| .+..+++|++|++++|++++ ++. +.++++|++|++++|.+++. + .+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence            34588888888887 455 68889999999999999984 555 88999999999999999873 3 6888999999999


Q ss_pred             ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI  198 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (403)
                      ++|++++. +.   +..+++|++|++++|.+++..+   +                                        
T Consensus       115 ~~n~l~~~-~~---l~~l~~L~~L~l~~n~l~~~~~---l----------------------------------------  147 (308)
T 1h6u_A          115 TSTQITDV-TP---LAGLSNLQVLYLDLNQITNISP---L----------------------------------------  147 (308)
T ss_dssp             TTSCCCCC-GG---GTTCTTCCEEECCSSCCCCCGG---G----------------------------------------
T ss_pred             CCCCCCCc-hh---hcCCCCCCEEECCCCccCcCcc---c----------------------------------------
Confidence            99998663 32   3788999999999998876532   1                                        


Q ss_pred             hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663          199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  278 (403)
Q Consensus       199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  278 (403)
                         ..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++
T Consensus       148 ---~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  218 (308)
T 1h6u_A          148 ---AGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN  218 (308)
T ss_dssp             ---GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred             ---cCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence               1267889999999999854 43 8899999999999999985443  7889999999999999986543  788999


Q ss_pred             CCEEeCcCCcCcc
Q 015663          279 LSVLNLSYNQFEG  291 (403)
Q Consensus       279 L~~L~L~~N~l~~  291 (403)
                      |+.|++++|++++
T Consensus       219 L~~L~l~~N~i~~  231 (308)
T 1h6u_A          219 LFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEEEEEEEEEC
T ss_pred             CCEEEccCCeeec
Confidence            9999999999984

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=192.78  Aligned_cols=226  Identities=21%  Similarity=0.229  Sum_probs=175.6

Q ss_pred             CCCEEECcCCcCcccC-Cc--cccCCCCcCEEEccCCcCcCCCCccc--cCCCCCCEEEccCCcCCcCCC----hhccCC
Q 015663           40 THKVLDMRMNNFNGKI-PR--KFVKSCNLTSLNLNGNRLEGPLPPSL--VNCHHLEVLNVGNNQINDNFP----NWLEIL  110 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~-p~--~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l  110 (403)
                      .++.+++.++.++... ..  .+..+++|++|++++|.+++..|..+  .++++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            5678888888776321 11  12245679999999999999999888  899999999999999998655    345678


Q ss_pred             CCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEE
Q 015663          111 PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII  190 (403)
Q Consensus       111 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (403)
                      ++|++|++++|++.+..+..+  ..+++|++|++++|.+.+.....      .                           
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~------~---------------------------  189 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLM------A---------------------------  189 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHH------T---------------------------
T ss_pred             cCCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhh------H---------------------------
Confidence            999999999999987777766  88999999999999986431100      0                           


Q ss_pred             EEEeccchhhhhhcccceEEEcccCcccccCCc----ccCCCCCCCEEEecCCCCCCCcCccccCC---CCCCEEeccCC
Q 015663          191 LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE----VVGKLNLLKGLNISHNNLTGDIPSSLRNL---TEVESLDLSSN  263 (403)
Q Consensus       191 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~Ls~n  263 (403)
                             ......+++|++|++++|+++ .++.    .++.+++|++|+|++|++++..|..+..+   ++|++|++++|
T Consensus       190 -------~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N  261 (310)
T 4glp_A          190 -------ALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA  261 (310)
T ss_dssp             -------TSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred             -------HHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence                   000112678999999999997 3333    35788999999999999998878777776   69999999999


Q ss_pred             cCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCC
Q 015663          264 MLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSG  312 (403)
Q Consensus       264 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~  312 (403)
                      +++ .+|..+.  ++|+.|++++|++++. |....+..+..+.+.+|+.
T Consensus       262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred             CCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence            999 6777664  7999999999999963 4444556677777777754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=2.5e-24  Score=201.61  Aligned_cols=241  Identities=18%  Similarity=0.197  Sum_probs=141.9

Q ss_pred             EECCCCCCCCcCC---CCCCCCCeEeCCCC-----------------C-CCCEEECcCCcCcccCCccccCC-----CCc
Q 015663           12 LDLSNNFLTNIEY---FPPTNMTQLNFDSN-----------------L-THKVLDMRMNNFNGKIPRKFVKS-----CNL   65 (403)
Q Consensus        12 L~Ls~n~l~~~~~---~~~~~L~~L~l~~n-----------------~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L   65 (403)
                      ++++.|.+++.+|   ....+|+.|+|++|                 + +|++|++++|.+++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            5667777776655   23333444444444                 2 45666666666665555555443     666


Q ss_pred             CEEEccCCcCcCCCCcc----ccCC-CCCCEEEccCCcCCcCCChhc----cC-CCCCcEEEcccccccCcCCCCC--Cc
Q 015663           66 TSLNLNGNRLEGPLPPS----LVNC-HHLEVLNVGNNQINDNFPNWL----EI-LPELQVLILRSNRFWGPIGENT--TI  133 (403)
Q Consensus        66 ~~L~L~~n~l~~~~p~~----~~~l-~~L~~L~l~~n~l~~~~p~~~----~~-l~~L~~L~l~~n~l~~~~~~~~--~~  133 (403)
                      ++|++++|++++..+..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++.....+  .+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            66666666666444443    2233 566666666666665444332    22 2466666666666543221110  01


Q ss_pred             cCCC-CccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc-ccceEEE
Q 015663          134 VPFP-SLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL-TIFMTID  211 (403)
Q Consensus       134 ~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~  211 (403)
                      ..++ +|++|++++|.+++..+..+...                                        .... ++|+.|+
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----------------------------------------l~~~~~~L~~L~  202 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKF----------------------------------------LASIPASVTSLD  202 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHH----------------------------------------HHTSCTTCCEEE
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHH----------------------------------------HHhCCCCCCEEE
Confidence            2233 66666666666655443322111                                        1113 4788999


Q ss_pred             cccCccccc----CCcccCC-CCCCCEEEecCCCCCCCcC----ccccCCCCCCEEeccCCcCCCCC-------CccccC
Q 015663          212 LSSNKFQGG----IPEVVGK-LNLLKGLNISHNNLTGDIP----SSLRNLTEVESLDLSSNMLVGHI-------PTQLTS  275 (403)
Q Consensus       212 Ls~n~l~~~----~p~~~~~-l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~-------p~~~~~  275 (403)
                      +++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|+.|++++|.+.+..       +..+..
T Consensus       203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~  282 (362)
T 3goz_A          203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN  282 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT
T ss_pred             CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc
Confidence            999998863    3444544 3589999999999886444    34467788999999999855432       335677


Q ss_pred             CCCCCEEeCcCCcCccC
Q 015663          276 LKYLSVLNLSYNQFEGP  292 (403)
Q Consensus       276 l~~L~~L~L~~N~l~~~  292 (403)
                      +++|+.||+++|++.+.
T Consensus       283 l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          283 IQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCEEEEECTTSCBCCGG
T ss_pred             CCceEEEecCCCcCCCc
Confidence            88888999999988754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.9e-25  Score=211.09  Aligned_cols=242  Identities=19%  Similarity=0.203  Sum_probs=157.1

Q ss_pred             CCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCCCCCCEEECcCC---cCcccCCccc-------cCCCCcCEEEcc
Q 015663            6 IATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMN---NFNGKIPRKF-------VKSCNLTSLNLN   71 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~L~   71 (403)
                      +++|++|+|++|.++...+    ..+.++        ++|++|++++|   .+++.+|..+       ..+++|++|+|+
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~--------~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASK--------KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTC--------TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhC--------CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            4556666666666655422    112222        33366666664   3334445444       566777777777


Q ss_pred             CCcCcC----CCCccccCCCCCCEEEccCCcCCcCCChhcc----CC---------CCCcEEEccccccc-CcCCCC-CC
Q 015663           72 GNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNFPNWLE----IL---------PELQVLILRSNRFW-GPIGEN-TT  132 (403)
Q Consensus        72 ~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l---------~~L~~L~l~~n~l~-~~~~~~-~~  132 (403)
                      +|+++.    .+|..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|+++ +.++.. -.
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence            777775    2555666777777777777777543333332    23         67777777777764 222210 01


Q ss_pred             ccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEc
Q 015663          133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL  212 (403)
Q Consensus       133 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  212 (403)
                      +..+++|++|++++|.++........                                       ......+++|+.|+|
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g~~~l~---------------------------------------~~~l~~~~~L~~L~L  223 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEGIEHLL---------------------------------------LEGLAYCQELKVLDL  223 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHH---------------------------------------HTTGGGCTTCCEEEC
T ss_pred             HHhCCCcCEEECcCCCCCHhHHHHHH---------------------------------------HHHhhcCCCccEEEC
Confidence            24566777777777766521100000                                       001223788999999


Q ss_pred             ccCccc----ccCCcccCCCCCCCEEEecCCCCCCC----cCcccc--CCCCCCEEeccCCcCCC----CCCccc-cCCC
Q 015663          213 SSNKFQ----GGIPEVVGKLNLLKGLNISHNNLTGD----IPSSLR--NLTEVESLDLSSNMLVG----HIPTQL-TSLK  277 (403)
Q Consensus       213 s~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~--~l~~L~~L~Ls~n~l~~----~~p~~~-~~l~  277 (403)
                      ++|.++    +.+|..+..+++|++|+|++|.+++.    ++..+.  .+++|+.|+|++|++++    .+|..+ .+++
T Consensus       224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~  303 (386)
T 2ca6_A          224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  303 (386)
T ss_dssp             CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence            999996    56788889999999999999999864    456663  48999999999999997    377776 6689


Q ss_pred             CCCEEeCcCCcCccCCC
Q 015663          278 YLSVLNLSYNQFEGPIP  294 (403)
Q Consensus       278 ~L~~L~L~~N~l~~~ip  294 (403)
                      +|+.|++++|++++..|
T Consensus       304 ~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          304 DLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCEEECTTSBSCTTSH
T ss_pred             CceEEEccCCcCCcchh
Confidence            99999999999986553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.89  E-value=3.9e-25  Score=213.87  Aligned_cols=270  Identities=16%  Similarity=0.118  Sum_probs=192.4

Q ss_pred             CccEEECCCCCCCCcC----C---CCCCCCCeEeCCCC------------------CCCCEEECcCCcCccc----CCcc
Q 015663            8 TLYYLDLSNNFLTNIE----Y---FPPTNMTQLNFDSN------------------LTHKVLDMRMNNFNGK----IPRK   58 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~----~---~~~~~L~~L~l~~n------------------~~L~~L~Ls~n~l~~~----~p~~   58 (403)
                      +|++|+|++|.++...    +   ..+++|+.|++++|                  ++|++|++++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            7999999999999532    3   67889999999999                  3699999999999864    3666


Q ss_pred             ccCCCCcCEEEccCCcCcCCCCcccc-----CCCCCCEEEccCCcCCcC----CChhccCCCCCcEEEcccccccCcCCC
Q 015663           59 FVKSCNLTSLNLNGNRLEGPLPPSLV-----NCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIGE  129 (403)
Q Consensus        59 ~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~~~  129 (403)
                      +..+++|++|++++|.++...+..+.     .+++|++|++++|.++..    ++..+..+++|++|++++|.+.+....
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            77889999999999998854444443     367999999999999874    467778899999999999988553211


Q ss_pred             CC---CccCCCCccEEEccCCccccccchhh---hhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhh
Q 015663          130 NT---TIVPFPSLRIIDLSHNEFTGVLLTGY---LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERI  203 (403)
Q Consensus       130 ~~---~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (403)
                      .+   .+..+++|++|++++|.+++.....+   +..++.|+.++..........              ...+.......
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--------------~~~l~~~l~~~  311 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG--------------ARLLCETLLEP  311 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH--------------HHHHHHHHTST
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH--------------HHHHHHHhccC
Confidence            00   01357899999999999986532222   333444444433111100000              00000011111


Q ss_pred             cccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCccccC-----CCCCCEEeccCCcCCC----CCC
Q 015663          204 LTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPSSLRN-----LTEVESLDLSSNMLVG----HIP  270 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~~----~~p  270 (403)
                      .+.|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|+.|++++|++++    .+|
T Consensus       312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            35888999999988865    4556667788999999999887554444432     6789999999998885    567


Q ss_pred             ccccCCCCCCEEeCcCCcCcc
Q 015663          271 TQLTSLKYLSVLNLSYNQFEG  291 (403)
Q Consensus       271 ~~~~~l~~L~~L~L~~N~l~~  291 (403)
                      ..+..+++|++|++++|++++
T Consensus       392 ~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          392 ATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHhCCCccEEECCCCCCCH
Confidence            778888889999999998864

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=1.5e-22  Score=184.97  Aligned_cols=194  Identities=19%  Similarity=0.268  Sum_probs=161.0

Q ss_pred             CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   84 (403)
                      ++++|++|++++|.++...  .+..+        ++|++|++++|.+++. +. +..+++|++|++++|++++ ++ .+.
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~~~~l--------~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~  104 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE--GVQYL--------NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIA  104 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGC--------TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGT
T ss_pred             HcCCcCEEEeeCCCccCch--hhhcc--------CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhc
Confidence            3578999999999888753  23333        4559999999999854 44 9999999999999999994 44 689


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  164 (403)
                      ++++|++|++++|.+++. +. +..+++|++|++++|.+++..+    +..+++|++|++++|.+++..+   +      
T Consensus       105 ~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---l------  169 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---L------  169 (308)
T ss_dssp             TCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---G------
T ss_pred             CCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcCCCChh---h------
Confidence            999999999999999984 43 8999999999999999976543    4889999999999999886432   1      


Q ss_pred             cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD  244 (403)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  244 (403)
                                                           ..+++|+.|++++|.+++..+  +..+++|++|++++|++++.
T Consensus       170 -------------------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          170 -------------------------------------ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             -------------------------------------TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred             -------------------------------------cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcc
Confidence                                                 126789999999999985443  78999999999999999954


Q ss_pred             cCccccCCCCCCEEeccCCcCCCC
Q 015663          245 IPSSLRNLTEVESLDLSSNMLVGH  268 (403)
Q Consensus       245 ~p~~~~~l~~L~~L~Ls~n~l~~~  268 (403)
                      .  .+..+++|+.|++++|++++.
T Consensus       211 ~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          211 S--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             G--GGTTCTTCCEEEEEEEEEECC
T ss_pred             c--cccCCCCCCEEEccCCeeecC
Confidence            4  388999999999999999853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.5e-24  Score=200.95  Aligned_cols=202  Identities=17%  Similarity=0.193  Sum_probs=119.9

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCC-CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      .++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            447777788877765554 55678888888888887754 6667778888888888888877767777777888888888


Q ss_pred             ccc-cccCc-CCCCCCccCCCCccEEEccCC-ccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEec
Q 015663          119 RSN-RFWGP-IGENTTIVPFPSLRIIDLSHN-EFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKG  195 (403)
Q Consensus       119 ~~n-~l~~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (403)
                      ++| .+++. ++..+  ..+++|++|++++| .+++......+..                                   
T Consensus       150 ~~~~~l~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~-----------------------------------  192 (336)
T 2ast_B          150 SGCSGFSEFALQTLL--SSCSRLDELNLSWCFDFTEKHVQVAVAH-----------------------------------  192 (336)
T ss_dssp             TTCBSCCHHHHHHHH--HHCTTCCEEECCCCTTCCHHHHHHHHHH-----------------------------------
T ss_pred             CCCCCCCHHHHHHHH--hcCCCCCEEcCCCCCCcChHHHHHHHHh-----------------------------------
Confidence            887 45432 33322  56778888888888 7764321121222                                   


Q ss_pred             cchhhhhhcc-cceEEEcccC--ccc-ccCCcccCCCCCCCEEEecCCC-CCCCcCccccCCCCCCEEeccCCc-CCCCC
Q 015663          196 IDIKMERILT-IFMTIDLSSN--KFQ-GGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNM-LVGHI  269 (403)
Q Consensus       196 ~~~~~~~~~~-~L~~L~Ls~n--~l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~  269 (403)
                              ++ +|+.|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +....
T Consensus       193 --------l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          193 --------VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             --------SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             --------cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence                    34 4555555555  232 2334444445555555555555 443444445555555555555553 22111


Q ss_pred             CccccCCCCCCEEeCcCC
Q 015663          270 PTQLTSLKYLSVLNLSYN  287 (403)
Q Consensus       270 p~~~~~l~~L~~L~L~~N  287 (403)
                      ...+..+++|+.|++++|
T Consensus       265 ~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          265 LLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGCTTCCEEECTTS
T ss_pred             HHHHhcCCCCCEEeccCc
Confidence            123444555555555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=8.8e-25  Score=211.38  Aligned_cols=286  Identities=18%  Similarity=0.113  Sum_probs=201.1

Q ss_pred             CCCCccEEECCCCCCCCcCC----CCCC----CCCeEeCCCC-----------------CCCCEEECcCCcCcccCCccc
Q 015663            5 GIATLYYLDLSNNFLTNIEY----FPPT----NMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKF   59 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~----~~~~----~L~~L~l~~n-----------------~~L~~L~Ls~n~l~~~~p~~~   59 (403)
                      .+++|++|+|++|.+++..+    ..+.    +|+.|++++|                 ++|++|++++|.+++..+..+
T Consensus        54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  133 (461)
T 1z7x_W           54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL  133 (461)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence            46899999999999987433    2334    7999999998                 799999999999986544443


Q ss_pred             c-----CCCCcCEEEccCCcCcCC----CCccccCCCCCCEEEccCCcCCcCCChhcc-----CCCCCcEEEcccccccC
Q 015663           60 V-----KSCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFPNWLE-----ILPELQVLILRSNRFWG  125 (403)
Q Consensus        60 ~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~  125 (403)
                      .     ..++|++|++++|++++.    ++..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++
T Consensus       134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            3     356899999999999964    356677889999999999998775444443     36799999999999865


Q ss_pred             c----CCCCCCccCCCCccEEEccCCccccccchhhhh----hhhhhcccCCCcccccccCCCCCCCcceEEEEEEecc-
Q 015663          126 P----IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLD----NFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI-  196 (403)
Q Consensus       126 ~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  196 (403)
                      .    ++..+  ..+++|++|++++|.+++.....+..    .++.|+.+......                   +... 
T Consensus       214 ~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-------------------l~~~~  272 (461)
T 1z7x_W          214 DNCRDLCGIV--ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-------------------ITAKG  272 (461)
T ss_dssp             THHHHHHHHH--HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-------------------CCHHH
T ss_pred             HHHHHHHHHH--HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-------------------CCHHH
Confidence            3    23333  57899999999999987643322211    23344433331111                   0010 


Q ss_pred             ---chhhhhhcccceEEEcccCcccccCCcccC-----CCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCc
Q 015663          197 ---DIKMERILTIFMTIDLSSNKFQGGIPEVVG-----KLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNM  264 (403)
Q Consensus       197 ---~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~  264 (403)
                         -......+++|+.|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|+.|++++|+
T Consensus       273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR  352 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence               012233478899999999998755443332     236899999999998854    45667778999999999999


Q ss_pred             CCCCCCccccC-----CCCCCEEeCcCCcCcc----CCCCC-CCCCCCCCCcCCCCC
Q 015663          265 LVGHIPTQLTS-----LKYLSVLNLSYNQFEG----PIPRG-SQFNTFPNDSYVGNS  311 (403)
Q Consensus       265 l~~~~p~~~~~-----l~~L~~L~L~~N~l~~----~ip~~-~~~~~~~~~~~~gn~  311 (403)
                      +++..+..+..     .++|++|++++|.+++    .+|.. .....+..+++.+|.
T Consensus       353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            88665544432     6789999999999885    44543 123445555565553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=1.4e-21  Score=193.90  Aligned_cols=239  Identities=21%  Similarity=0.275  Sum_probs=171.5

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG   77 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~   77 (403)
                      ++|++|++++|.|+.+++ .+++|+.|+|++|         ++|++|++++|.+++ +|.   .+++|+.|++++|+++ 
T Consensus        61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-  134 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-  134 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCCCCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-
T ss_pred             CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCCCCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-
Confidence            679999999999997665 7889999999998         588999999999984 554   5678899999999988 


Q ss_pred             CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhh
Q 015663           78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY  157 (403)
Q Consensus        78 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  157 (403)
                      .+|..   +++|++|++++|.+++ +|.   .+.+|+.|++++|.+++ +|     ..+++|+.|++++|.+++... . 
T Consensus       135 ~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~-----~~~~~L~~L~Ls~N~l~~l~~-~-  199 (622)
T 3g06_A          135 SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP-----MLPSGLQELSVSDNQLASLPT-L-  199 (622)
T ss_dssp             CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECCSSCCSCCCC-C-
T ss_pred             cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc-----ccCCCCcEEECCCCCCCCCCC-c-
Confidence            46653   4889999999998887 443   34678888888888754 33     235778888888888776432 1 


Q ss_pred             hhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEec
Q 015663          158 LDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNIS  237 (403)
Q Consensus       158 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  237 (403)
                      ..+++.|.   ........+...  ...+..+.++.+.+.. ++..+++|+.|++++|.++ .+|.   .+++|+.|+|+
T Consensus       200 ~~~L~~L~---L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          200 PSELYKLW---AYNNRLTSLPAL--PSGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY  269 (622)
T ss_dssp             CTTCCEEE---CCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred             cchhhEEE---CcCCcccccCCC--CCCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence            23333332   212111111111  0122233222222221 2244689999999999999 5665   57899999999


Q ss_pred             CCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCC
Q 015663          238 HNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK  277 (403)
Q Consensus       238 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  277 (403)
                      +|+++ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus       270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            99999 7899999999999999999999988888776544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=9.7e-22  Score=192.82  Aligned_cols=182  Identities=23%  Similarity=0.305  Sum_probs=134.8

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  119 (403)
                      +++.|++++|.+++ +|..+.  ++|++|++++|+++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56788888888875 666553  67888888888888 666   456788888888888887 565 554  78888888


Q ss_pred             cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015663          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK  199 (403)
Q Consensus       120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (403)
                      +|++++ +|.     .+++|+.|++++|.+++... .                                           
T Consensus       129 ~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~lp~-~-------------------------------------------  158 (571)
T 3cvr_A          129 NNQLTM-LPE-----LPALLEYINADNNQLTMLPE-L-------------------------------------------  158 (571)
T ss_dssp             SSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC-C-------------------------------------------
T ss_pred             CCcCCC-CCC-----cCccccEEeCCCCccCcCCC-c-------------------------------------------
Confidence            888866 444     36788888888888775321 1                                           


Q ss_pred             hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCC-------CEEeccCCcCCCCCCcc
Q 015663          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEV-------ESLDLSSNMLVGHIPTQ  272 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~p~~  272 (403)
                          +++|+.|++++|.+++ +|. +.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..
T Consensus       159 ----l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~  225 (571)
T 3cvr_A          159 ----PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN  225 (571)
T ss_dssp             ----CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred             ----CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence                5678888888888885 665 55  78888888888888 6666 544  66       88888888888 56777


Q ss_pred             ccCCCCCCEEeCcCCcCccCCCC
Q 015663          273 LTSLKYLSVLNLSYNQFEGPIPR  295 (403)
Q Consensus       273 ~~~l~~L~~L~L~~N~l~~~ip~  295 (403)
                      +..+++|+.|++++|.+++.+|.
T Consensus       226 l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          226 ILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             GGGSCTTEEEECCSSSCCHHHHH
T ss_pred             HhcCCCCCEEEeeCCcCCCcCHH
Confidence            77788888888888888876664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.5e-21  Score=168.10  Aligned_cols=175  Identities=19%  Similarity=0.188  Sum_probs=95.0

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      +.++.+++.++ .+|..+  .++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34555555554 333332  235566666666655444444555566666666666555544444555555555555555


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (403)
                      ++++..+..+  ..+++|++                                                            
T Consensus        87 ~l~~~~~~~~--~~l~~L~~------------------------------------------------------------  104 (208)
T 2o6s_A           87 QLQSLPNGVF--DKLTQLKE------------------------------------------------------------  104 (208)
T ss_dssp             CCCCCCTTTT--TTCTTCCE------------------------------------------------------------
T ss_pred             cCCccCHhHh--cCccCCCE------------------------------------------------------------
Confidence            5543332222  33444444                                                            


Q ss_pred             hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV  281 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  281 (403)
                              |++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+       .+++|+.
T Consensus       105 --------L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~  169 (208)
T 2o6s_A          105 --------LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRY  169 (208)
T ss_dssp             --------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHH
T ss_pred             --------EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHH
Confidence                    4444444443444445566666666666666665444456666666666666665542       3445666


Q ss_pred             EeCcCCcCccCCCCC
Q 015663          282 LNLSYNQFEGPIPRG  296 (403)
Q Consensus       282 L~L~~N~l~~~ip~~  296 (403)
                      |+++.|+++|.+|..
T Consensus       170 L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          170 LSEWINKHSGVVRNS  184 (208)
T ss_dssp             HHHHHHHCTTTBBCT
T ss_pred             HHHHHHhCCceeecc
Confidence            667777777666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.1e-22  Score=188.29  Aligned_cols=210  Identities=17%  Similarity=0.203  Sum_probs=164.8

Q ss_pred             CCCCEEECcCCcCccc-CCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCC-cCCcC-CChhccCCCCCcE
Q 015663           39 LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN-QINDN-FPNWLEILPELQV  115 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~  115 (403)
                      ++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            5679999999999866 8888999999999999999999888888999999999999999 67752 6677888999999


Q ss_pred             EEcccc-cccCc-CCCCCCccCCC-CccEEEccCCc--cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEE
Q 015663          116 LILRSN-RFWGP-IGENTTIVPFP-SLRIIDLSHNE--FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII  190 (403)
Q Consensus       116 L~l~~n-~l~~~-~~~~~~~~~l~-~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (403)
                      |++++| .+++. ++..+  ..++ +|++|++++|.  ++.....                                   
T Consensus       173 L~l~~~~~l~~~~~~~~~--~~l~~~L~~L~l~~~~~~~~~~~l~-----------------------------------  215 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYRKNLQKSDLS-----------------------------------  215 (336)
T ss_dssp             EECCCCTTCCHHHHHHHH--HHSCTTCCEEECCSCGGGSCHHHHH-----------------------------------
T ss_pred             EcCCCCCCcChHHHHHHH--HhcccCCCEEEeCCCcccCCHHHHH-----------------------------------
Confidence            999999 87643 33333  6788 99999999994  4421100                                   


Q ss_pred             EEEeccchhhhhhcccceEEEcccCc-ccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCCCCCCEEeccCCcCCCC
Q 015663          191 LTIKGIDIKMERILTIFMTIDLSSNK-FQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNMLVGH  268 (403)
Q Consensus       191 ~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  268 (403)
                              .....+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++..
T Consensus       216 --------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~  286 (336)
T 2ast_B          216 --------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG  286 (336)
T ss_dssp             --------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred             --------HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence                    112237889999999999 777788889999999999999995 33222236788999999999999 5433


Q ss_pred             CCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663          269 IPTQLTSLKYLSVLNLSYNQFEGPIPRG  296 (403)
Q Consensus       269 ~p~~~~~l~~L~~L~L~~N~l~~~ip~~  296 (403)
                      .-..+.  ..+..|++++|++++..|..
T Consensus       287 ~~~~l~--~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          287 TLQLLK--EALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             CHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred             HHHHHH--hhCcceEEecccCccccCCc
Confidence            222222  34677779999999887765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=8.5e-21  Score=176.66  Aligned_cols=235  Identities=15%  Similarity=0.083  Sum_probs=148.0

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCC-ccccCCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLP-PSLVNCHH   88 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~   88 (403)
                      ++++-++++++.++..-.+           +++.|+|++|+|+...+++|.++++|++|+|++|++.+.+| .+|.++++
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~-----------~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPR-----------NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCT-----------TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             CEEEecCCCCCccCcCcCC-----------CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            5677788888877543222           23677888888885555678888889999998888765554 46788887


Q ss_pred             CCE-EEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccC-Cccccccchhhhhhhhhhcc
Q 015663           89 LEV-LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH-NEFTGVLLTGYLDNFKAMMH  166 (403)
Q Consensus        89 L~~-L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~  166 (403)
                      ++. +++++|+++...|..|..+++|++|++++|++.+..+...  ....++..+++.+ +.+.......+ ..      
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f-~~------  151 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSF-VG------  151 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSS-TT------
T ss_pred             hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccch-hh------
Confidence            765 5667788888778888888888999888888865544433  4556777788765 44543332221 10      


Q ss_pred             cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecC-CCCCCCc
Q 015663          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH-NNLTGDI  245 (403)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~  245 (403)
                                                          ....++.|++++|+++. +|.......+|++|++++ |.++...
T Consensus       152 ------------------------------------~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~  194 (350)
T 4ay9_X          152 ------------------------------------LSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELP  194 (350)
T ss_dssp             ------------------------------------SBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred             ------------------------------------cchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCC
Confidence                                                02346667777777763 333333455677777764 4455333


Q ss_pred             CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCC
Q 015663          246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPN  304 (403)
Q Consensus       246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~  304 (403)
                      ++.|.++++|+.||+++|+|+...+..   +.+|+.|.+.++.--..+|....+..+..
T Consensus       195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~  250 (350)
T 4ay9_X          195 NDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALME  250 (350)
T ss_dssp             TTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred             HHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhh
Confidence            345677777777777777777433333   34455555544433335565444444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=6.9e-21  Score=177.27  Aligned_cols=223  Identities=20%  Similarity=0.149  Sum_probs=172.2

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCC-ccccCCCCcCE-EEccCCcCcCCCCcccc
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIP-RKFVKSCNLTS-LNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~p~~~~   84 (403)
                      +++++|+|++|.|+.+++..|.+|..|        ++|+|++|.+.+.+| .+|.+++++++ +.+++|+++...|..|.
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L--------~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~  101 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDL--------EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  101 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTC--------CEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCC--------CEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence            579999999999999888888888766        999999999876665 57889998876 56778999977788999


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCC-CCccEEEccCCccccccchhhhhhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPF-PSLRIIDLSHNEFTGVLLTGYLDNFKA  163 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~  163 (403)
                      ++++|++|++++|.++...+..+....++..+++.++.-...++... +..+ ..++.|++++|.++.+.+..+ .    
T Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-f~~~~~~l~~L~L~~N~i~~i~~~~f-~----  175 (350)
T 4ay9_X          102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-FVGLSFESVILWLNKNGIQEIHNSAF-N----  175 (350)
T ss_dssp             CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-STTSBSSCEEEECCSSCCCEECTTSS-T----
T ss_pred             hccccccccccccccccCCchhhcccchhhhhhhccccccccccccc-hhhcchhhhhhccccccccCCChhhc-c----
Confidence            99999999999999998777777778889999997643334444432 2444 468999999999986544321 1    


Q ss_pred             hcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEccc-CcccccCCcccCCCCCCCEEEecCCCCC
Q 015663          164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSS-NKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (403)
Q Consensus       164 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~  242 (403)
                                                              ..+++.|++++ |.++...++.|..+++|+.|++++|+|+
T Consensus       176 ----------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          176 ----------------------------------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             ----------------------------------------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             ----------------------------------------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence                                                    35688899975 6666444567899999999999999999


Q ss_pred             CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCC
Q 015663          243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYN  287 (403)
Q Consensus       243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N  287 (403)
                       .+|..  .+.+|+.|.+.++.-...+|. +..+++|+.++++++
T Consensus       216 -~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          216 -SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             -CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             -ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence             45542  356777777766644446664 788999999999865

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=3e-21  Score=166.15  Aligned_cols=194  Identities=20%  Similarity=0.149  Sum_probs=155.3

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L   89 (403)
                      +.++.+++.++.++....+           +|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPA-----------QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL   78 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEecCCCccCCCCCCCC-----------CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc
Confidence            5678888888877654333           34778999999997777778999999999999999996666678999999


Q ss_pred             CEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCC
Q 015663           90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN  169 (403)
Q Consensus        90 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~  169 (403)
                      ++|++++|.+++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++|.+++..+.. +           
T Consensus        79 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~-~-----------  144 (208)
T 2o6s_A           79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF--DKLTQLKDLRLYQNQLKSVPDGV-F-----------  144 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCSCCCTTT-T-----------
T ss_pred             CEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh--ccCCcCCEEECCCCccceeCHHH-h-----------
Confidence            999999999998777778999999999999999977665544  78999999999999998654422 1           


Q ss_pred             CcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccc
Q 015663          170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL  249 (403)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  249 (403)
                                                      ..+++|+.|++++|.+.+       .+++|+.|+++.|+++|.+|..+
T Consensus       145 --------------------------------~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          145 --------------------------------DRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             --------------------------------TTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             --------------------------------ccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccC
Confidence                                            226789999999998764       45678999999999999999988


Q ss_pred             cCCCCCCEEeccCCcCCCCCCc
Q 015663          250 RNLTEVESLDLSSNMLVGHIPT  271 (403)
Q Consensus       250 ~~l~~L~~L~Ls~n~l~~~~p~  271 (403)
                      +.++.    ++..|...+..+.
T Consensus       186 ~~l~~----~~~~C~~~~~~~~  203 (208)
T 2o6s_A          186 GSVAP----DSAKCSGSGKPVR  203 (208)
T ss_dssp             SSBCT----TCSBBTTTCCBGG
T ss_pred             ccccC----CccccccCCCcce
Confidence            87765    5555555444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=6.6e-23  Score=191.91  Aligned_cols=212  Identities=22%  Similarity=0.220  Sum_probs=134.0

Q ss_pred             CCCCEEECcCCcCcccCC----ccccCCC-CcCEEEccCCcCcCCCCccccCC-----CCCCEEEccCCcCCcCCChhcc
Q 015663           39 LTHKVLDMRMNNFNGKIP----RKFVKSC-NLTSLNLNGNRLEGPLPPSLVNC-----HHLEVLNVGNNQINDNFPNWLE  108 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~  108 (403)
                      ++|++||+++|.+++..+    +.|..++ +|++|++++|++++..+..+..+     ++|++|++++|.+++..+..+.
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            346666666666665444    5555565 66666666666665555555443     6666666666666654444332


Q ss_pred             ----CC-CCCcEEEcccccccCcCCCCC--CccC-CCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCC
Q 015663          109 ----IL-PELQVLILRSNRFWGPIGENT--TIVP-FPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPL  180 (403)
Q Consensus       109 ----~l-~~L~~L~l~~n~l~~~~~~~~--~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~  180 (403)
                          .+ ++|++|++++|++++..+..+  .+.. .++|++|++++|.+++.....+...+                   
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l-------------------  162 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL-------------------  162 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH-------------------
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH-------------------
Confidence                33 566666666666644332211  0112 23666666666666543322211111                   


Q ss_pred             CCCCcceEEEEEEeccchhhhhhc-ccceEEEcccCcccccCCcccC----CC-CCCCEEEecCCCCCCC----cCcccc
Q 015663          181 NSSNYYESIILTIKGIDIKMERIL-TIFMTIDLSSNKFQGGIPEVVG----KL-NLLKGLNISHNNLTGD----IPSSLR  250 (403)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~p~~~~----~l-~~L~~L~L~~n~l~~~----~p~~~~  250 (403)
                                           ... +.|+.|++++|.+++..+..+.    .. ++|++|+|++|.+++.    ++..+.
T Consensus       163 ---------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          163 ---------------------AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             ---------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             ---------------------hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence                                 113 4899999999999977765443    44 5999999999999853    455555


Q ss_pred             C-CCCCCEEeccCCcCCCCCC----ccccCCCCCCEEeCcCCcCc
Q 015663          251 N-LTEVESLDLSSNMLVGHIP----TQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       251 ~-l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~  290 (403)
                      . .++|+.|+|++|++++..+    ..+..+++|+.|++++|.+.
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence            5 4599999999999987654    34577899999999999855

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=1.6e-23  Score=197.86  Aligned_cols=236  Identities=17%  Similarity=0.235  Sum_probs=177.9

Q ss_pred             CCCCEEECcCCcCcccC----CccccCCCCcCEEEccCC---cCcCCCCccc-------cCCCCCCEEEccCCcCCc---
Q 015663           39 LTHKVLDMRMNNFNGKI----PRKFVKSCNLTSLNLNGN---RLEGPLPPSL-------VNCHHLEVLNVGNNQIND---  101 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~l~~n~l~~---  101 (403)
                      ++|+.|++++|.++...    +..+..+++|++|+|++|   ++++.+|..+       ..+++|++|++++|.++.   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            55688999999988653    345778999999999986   4445556554       688999999999999987   


Q ss_pred             -CCChhccCCCCCcEEEcccccccCcCCCCC--CccCC---------CCccEEEccCCccccccchhhhhhhhhhcccCC
Q 015663          102 -NFPNWLEILPELQVLILRSNRFWGPIGENT--TIVPF---------PSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN  169 (403)
Q Consensus       102 -~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l---------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~  169 (403)
                       .+|..+..+++|++|++++|.+++..+..+  .+..+         ++|++|++++|.++......+..          
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~----------  181 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK----------  181 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH----------
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH----------
Confidence             467788889999999999998854332222  01223         89999999999987332221111          


Q ss_pred             CcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccc-----cCCcccCCCCCCCEEEecCCCCC--
Q 015663          170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQG-----GIPEVVGKLNLLKGLNISHNNLT--  242 (403)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~--  242 (403)
                                                    ....++.|+.|++++|.++.     ..|..+..+++|+.|+|++|.++  
T Consensus       182 ------------------------------~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~  231 (386)
T 2ca6_A          182 ------------------------------TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL  231 (386)
T ss_dssp             ------------------------------HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred             ------------------------------HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence                                          11236789999999999983     34547889999999999999996  


Q ss_pred             --CCcCccccCCCCCCEEeccCCcCCCC----CCcccc--CCCCCCEEeCcCCcCcc----CCCCCC--CCCCCCCCcCC
Q 015663          243 --GDIPSSLRNLTEVESLDLSSNMLVGH----IPTQLT--SLKYLSVLNLSYNQFEG----PIPRGS--QFNTFPNDSYV  308 (403)
Q Consensus       243 --~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~----~ip~~~--~~~~~~~~~~~  308 (403)
                        +.+|..+..+++|+.|+|++|++++.    ++..+.  .+++|+.|+|++|.+++    .+|...  .+..+..+.+.
T Consensus       232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~  311 (386)
T 2ca6_A          232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  311 (386)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence              56788899999999999999999865    456663  48999999999999997    466543  24667777777


Q ss_pred             CCCCCC
Q 015663          309 GNSGLC  314 (403)
Q Consensus       309 gn~~lc  314 (403)
                      +|+.-.
T Consensus       312 ~N~l~~  317 (386)
T 2ca6_A          312 GNRFSE  317 (386)
T ss_dssp             TSBSCT
T ss_pred             CCcCCc
Confidence            776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=1.5e-20  Score=184.30  Aligned_cols=188  Identities=24%  Similarity=0.301  Sum_probs=155.0

Q ss_pred             CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~   87 (403)
                      +++.|++++|.++++++..++           +|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +.+  
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~-----------~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPP-----------QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--  120 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCT-----------TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--
T ss_pred             CccEEEeCCCCCCccCHhHcC-----------CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--
Confidence            799999999999986543332           3488899999998 677   457899999999999995 777 665  


Q ss_pred             CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhccc
Q 015663           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG  167 (403)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~  167 (403)
                      +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.     .+++|++|++++|.+++...  +          
T Consensus       121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~lp~--l----------  178 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTFLPE--L----------  178 (571)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC--C----------
T ss_pred             CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCCcch--h----------
Confidence            99999999999998 665   68999999999999976 554     46899999999999986321  1          


Q ss_pred             CCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCC-------CEEEecCCC
Q 015663          168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLL-------KGLNISHNN  240 (403)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~L~~n~  240 (403)
                                                          .++|+.|+|++|.++ .+|. +..  +|       +.|+|++|+
T Consensus       179 ------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          179 ------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred             ------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence                                                257899999999999 6676 554  77       999999999


Q ss_pred             CCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCC
Q 015663          241 LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK  277 (403)
Q Consensus       241 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  277 (403)
                      |+ .+|..+..+++|+.|+|++|++++.+|..+..+.
T Consensus       219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            99 6888888899999999999999998888876654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=2.3e-19  Score=155.56  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=36.2

Q ss_pred             cCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663          225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       225 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      |..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus       100 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            344455555555555555444555555555555555555555544455555555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=6.8e-20  Score=165.98  Aligned_cols=170  Identities=24%  Similarity=0.362  Sum_probs=95.0

Q ss_pred             CCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCcc
Q 015663           61 KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLR  140 (403)
Q Consensus        61 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  140 (403)
                      .+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++.   +..+++|+
T Consensus        44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~---l~~l~~L~  115 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS---LKDLKKLK  115 (291)
T ss_dssp             HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG---GTTCTTCC
T ss_pred             hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh---hccCCCCC
Confidence            3445555555555555 232 24555555555555555555322  5555555555555555533 221   24555566


Q ss_pred             EEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccccc
Q 015663          141 IIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG  220 (403)
Q Consensus       141 ~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  220 (403)
                      +|++++|.+++..  . +                                           ..+++|+.|++++|.+++.
T Consensus       116 ~L~L~~n~i~~~~--~-l-------------------------------------------~~l~~L~~L~l~~n~l~~~  149 (291)
T 1h6t_A          116 SLSLEHNGISDIN--G-L-------------------------------------------VHLPQLESLYLGNNKITDI  149 (291)
T ss_dssp             EEECTTSCCCCCG--G-G-------------------------------------------GGCTTCCEEECCSSCCCCC
T ss_pred             EEECCCCcCCCCh--h-h-------------------------------------------cCCCCCCEEEccCCcCCcc
Confidence            6666665555321  0 0                                           1145566666666666543


Q ss_pred             CCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663          221 IPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       221 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                        ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++
T Consensus       150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence              345666677777777777664333  6666777777777777664 33 2666677777777777665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=5.6e-20  Score=171.82  Aligned_cols=106  Identities=19%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc-CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV-NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      +.++++++.++ .+|..+..  .++.|+|++|++++..+..|. ++++|+.|++++|.|++..+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~~--~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCCT--TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCCC--CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            56677777776 45554432  467777777777755555565 677777777777777766666677777777777777


Q ss_pred             ccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015663          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (403)
Q Consensus       121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  152 (403)
                      |++++..+..+  ..+++|++|++++|.+++.
T Consensus        98 N~l~~~~~~~~--~~l~~L~~L~L~~N~i~~~  127 (361)
T 2xot_A           98 NHLHTLDEFLF--SDLQALEVLLLYNNHIVVV  127 (361)
T ss_dssp             SCCCEECTTTT--TTCTTCCEEECCSSCCCEE
T ss_pred             CcCCcCCHHHh--CCCcCCCEEECCCCcccEE
Confidence            77655444433  5566666666666666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.8e-19  Score=156.25  Aligned_cols=91  Identities=27%  Similarity=0.251  Sum_probs=67.8

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  283 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  283 (403)
                      +++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|+.|+
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            34455555555555555566677778888888888888877777788888888888888888877788888888888888


Q ss_pred             CcCCcCccCCC
Q 015663          284 LSYNQFEGPIP  294 (403)
Q Consensus       284 L~~N~l~~~ip  294 (403)
                      +++|.+++..+
T Consensus       160 L~~N~l~c~c~  170 (220)
T 2v70_A          160 LLANPFNCNCY  170 (220)
T ss_dssp             CCSCCEECSGG
T ss_pred             ecCcCCcCCCc
Confidence            88888876443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=1.8e-19  Score=163.20  Aligned_cols=171  Identities=26%  Similarity=0.357  Sum_probs=142.6

Q ss_pred             CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEc
Q 015663           39 LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLIL  118 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  118 (403)
                      ++|+.|++++|.+.. ++ .+..+++|++|++++|++++ ++. +.++++|++|++++|.+++ +| .+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence            455888999999874 44 48889999999999999995 444 8999999999999999987 34 4899999999999


Q ss_pred             ccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccch
Q 015663          119 RSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDI  198 (403)
Q Consensus       119 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (403)
                      ++|++++. +   .+..+++|++|++++|.+++..  . +                                        
T Consensus       120 ~~n~i~~~-~---~l~~l~~L~~L~l~~n~l~~~~--~-l----------------------------------------  152 (291)
T 1h6t_A          120 EHNGISDI-N---GLVHLPQLESLYLGNNKITDIT--V-L----------------------------------------  152 (291)
T ss_dssp             TTSCCCCC-G---GGGGCTTCCEEECCSSCCCCCG--G-G----------------------------------------
T ss_pred             CCCcCCCC-h---hhcCCCCCCEEEccCCcCCcch--h-h----------------------------------------
Confidence            99998653 2   2478999999999999988641  1 1                                        


Q ss_pred             hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCC
Q 015663          199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI  269 (403)
Q Consensus       199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  269 (403)
                         ..+++|+.|++++|.+++..|  +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++...
T Consensus       153 ---~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          153 ---SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             ---GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             ---ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence               126789999999999996555  8899999999999999984 44 4889999999999999998543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=7.8e-20  Score=170.86  Aligned_cols=130  Identities=23%  Similarity=0.210  Sum_probs=90.2

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCcccc-CCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV-KSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~   88 (403)
                      +.++++++.++.++.....           .++.|+|++|.+++..+..|. ++++|++|+|++|++++..+..|.++++
T Consensus        21 ~~l~c~~~~l~~iP~~~~~-----------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   89 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPS-----------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN   89 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCT-----------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CEEEeCCCCcCccCccCCC-----------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence            4677777777765432222           236667777777766666666 7777777777777777666666777777


Q ss_pred             CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccc
Q 015663           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV  152 (403)
Q Consensus        89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  152 (403)
                      |++|+|++|+++...+..|..+++|++|++++|++++..+..+  ..+++|++|++++|.+++.
T Consensus        90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCCSC
T ss_pred             CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCCee
Confidence            7777777777777666667777777777777777766555554  6677777777777777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=5.7e-19  Score=154.13  Aligned_cols=155  Identities=25%  Similarity=0.298  Sum_probs=89.2

Q ss_pred             CcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEE
Q 015663           64 NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIID  143 (403)
Q Consensus        64 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  143 (403)
                      .-+.++.++++++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++.+..+..+  ..+++|++|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~   94 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLD   94 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEE
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCcCEEE
Confidence            3456666666666 5555443  667777777777777666666777777777777777644333333  5566666666


Q ss_pred             ccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCc
Q 015663          144 LSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPE  223 (403)
Q Consensus       144 l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~  223 (403)
                      +++|.+++.                                                                    .+.
T Consensus        95 Ls~N~l~~l--------------------------------------------------------------------~~~  106 (229)
T 3e6j_A           95 LGTNQLTVL--------------------------------------------------------------------PSA  106 (229)
T ss_dssp             CCSSCCCCC--------------------------------------------------------------------CTT
T ss_pred             CCCCcCCcc--------------------------------------------------------------------Chh
Confidence            666655532                                                                    222


Q ss_pred             ccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015663          224 VVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP  292 (403)
Q Consensus       224 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  292 (403)
                      .+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+.
T Consensus       107 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            2344455555555555555 4455555555555555555555544444555555566666666655543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=1.5e-19  Score=179.15  Aligned_cols=81  Identities=30%  Similarity=0.401  Sum_probs=40.5

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  283 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  283 (403)
                      +++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++. | .+..+++|+.|+
T Consensus       130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~  203 (605)
T 1m9s_A          130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLE  203 (605)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEE
T ss_pred             CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEE
Confidence            34445555555555432  334455555555555555553333  45555555555555555532 2 345555555555


Q ss_pred             CcCCcCc
Q 015663          284 LSYNQFE  290 (403)
Q Consensus       284 L~~N~l~  290 (403)
                      |++|+++
T Consensus       204 L~~N~l~  210 (605)
T 1m9s_A          204 LFSQECL  210 (605)
T ss_dssp             CCSEEEE
T ss_pred             ccCCcCc
Confidence            5555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=7.8e-19  Score=153.27  Aligned_cols=156  Identities=20%  Similarity=0.203  Sum_probs=130.8

Q ss_pred             CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      .+.++.+++.++ .+|..+.  ++|++|++++|++++..|..|.++++|++|++++|.++...+..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            378999999997 6776554  7999999999999988899999999999999999999987777889999999999999


Q ss_pred             ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhh
Q 015663          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM  200 (403)
Q Consensus       121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (403)
                      |++++..+..+  ..+++|++|++++|.++                                                  
T Consensus        98 N~l~~l~~~~~--~~l~~L~~L~Ls~N~l~--------------------------------------------------  125 (229)
T 3e6j_A           98 NQLTVLPSAVF--DRLVHLKELFMCCNKLT--------------------------------------------------  125 (229)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECCSSCCC--------------------------------------------------
T ss_pred             CcCCccChhHh--CcchhhCeEeccCCccc--------------------------------------------------
Confidence            99976555544  56666666666666554                                                  


Q ss_pred             hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCC
Q 015663          201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIP  270 (403)
Q Consensus       201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  270 (403)
                                         .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+....+
T Consensus       126 -------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          126 -------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             -------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             -------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence                               455666788999999999999997777789999999999999999986543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=3.9e-19  Score=154.15  Aligned_cols=64  Identities=19%  Similarity=0.220  Sum_probs=47.2

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCC
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG  267 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  267 (403)
                      +++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus       103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            4455556666666665666677778888888888888887666778888888888888888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=8.5e-19  Score=152.00  Aligned_cols=145  Identities=19%  Similarity=0.175  Sum_probs=121.4

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCC--------------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSN--------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRL   75 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n--------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l   75 (403)
                      +.+++++|.++.++......++.|++++|              ++|++|++++|.+++..+..|.++++|++|++++|++
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence            46777777777665544555666766666              5779999999999988888899999999999999999


Q ss_pred             cCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccch
Q 015663           76 EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLT  155 (403)
Q Consensus        76 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  155 (403)
                      ++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..|..+  ..+++|+.|++++|.+.+..+.
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGG
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCch
Confidence            97777779999999999999999999888899999999999999999988777766  8899999999999999876553


Q ss_pred             h
Q 015663          156 G  156 (403)
Q Consensus       156 ~  156 (403)
                      .
T Consensus       172 ~  172 (220)
T 2v70_A          172 A  172 (220)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=4.6e-19  Score=175.63  Aligned_cols=194  Identities=24%  Similarity=0.321  Sum_probs=150.4

Q ss_pred             ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~   88 (403)
                      +..+.++.+.+.+..+  +..|        +.|+.|++++|.+. .+| .+..+++|+.|+|++|++++ +++ +.++++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L--------~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~   88 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNEL--------NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKN   88 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHH--------TTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTT
T ss_pred             HHHHhccCCCcccccc--hhcC--------CCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCC
Confidence            4444556666655543  1122        34477888888887 444 58889999999999999995 444 889999


Q ss_pred             CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccC
Q 015663           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGN  168 (403)
Q Consensus        89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~  168 (403)
                      |+.|+|++|.+++ +| .+..+++|+.|++++|.+.+. +   .+..+++|+.|+|++|.+++..  . +          
T Consensus        89 L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~---~l~~l~~L~~L~Ls~N~l~~l~--~-l----------  149 (605)
T 1m9s_A           89 LGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N---GLVHLPQLESLYLGNNKITDIT--V-L----------  149 (605)
T ss_dssp             CCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G---GGGGCTTCSEEECCSSCCCCCG--G-G----------
T ss_pred             CCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c---cccCCCccCEEECCCCccCCch--h-h----------
Confidence            9999999999987 34 688999999999999998653 2   2478899999999999888641  1 1          


Q ss_pred             CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015663          169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS  248 (403)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  248 (403)
                                                       ..+++|+.|+|++|.+++..|  +..+++|+.|+|++|++++ + ..
T Consensus       150 ---------------------------------~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~  192 (605)
T 1m9s_A          150 ---------------------------------SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L-RA  192 (605)
T ss_dssp             ---------------------------------GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C-GG
T ss_pred             ---------------------------------cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-C-hH
Confidence                                             126789999999999997666  8899999999999999985 4 45


Q ss_pred             ccCCCCCCEEeccCCcCCCCCCcc
Q 015663          249 LRNLTEVESLDLSSNMLVGHIPTQ  272 (403)
Q Consensus       249 ~~~l~~L~~L~Ls~n~l~~~~p~~  272 (403)
                      +..+++|+.|+|++|++.+.....
T Consensus       193 l~~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             GTTCTTCSEEECCSEEEECCCCCC
T ss_pred             HccCCCCCEEEccCCcCcCCcccc
Confidence            889999999999999998654333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=1.8e-19  Score=160.60  Aligned_cols=80  Identities=26%  Similarity=0.309  Sum_probs=44.0

Q ss_pred             cceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCc
Q 015663          206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS  285 (403)
Q Consensus       206 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  285 (403)
                      +|+.|++++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++.  ..+..+++|+.|+++
T Consensus       107 ~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          107 CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred             cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence            34445555555443 22 35555666666666666653 22 455566666666666666544  445566666666666


Q ss_pred             CCcCcc
Q 015663          286 YNQFEG  291 (403)
Q Consensus       286 ~N~l~~  291 (403)
                      +|.+++
T Consensus       181 ~N~~~~  186 (263)
T 1xeu_A          181 GQKCVN  186 (263)
T ss_dssp             EEEEEC
T ss_pred             CCcccC
Confidence            666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=2.2e-18  Score=146.83  Aligned_cols=83  Identities=22%  Similarity=0.308  Sum_probs=52.9

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  282 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  282 (403)
                      +++|+.|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L  186 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL  186 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence            3445555555555555555566667777777777776 54 444 46777777777777777774 33 56677777777


Q ss_pred             eCcCCcCc
Q 015663          283 NLSYNQFE  290 (403)
Q Consensus       283 ~L~~N~l~  290 (403)
                      ++++|++.
T Consensus       187 ~l~~N~i~  194 (197)
T 4ezg_A          187 YAFSQTIG  194 (197)
T ss_dssp             EECBC---
T ss_pred             EeeCcccC
Confidence            77777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=6.7e-19  Score=156.95  Aligned_cols=167  Identities=21%  Similarity=0.273  Sum_probs=132.4

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      ..++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|+.|++++|.+++..+  +..+++|++|++++|
T Consensus        22 ~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           22 VKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             HHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence            556777888773 33 5778888999999999888 566 68888999999999999888444  888899999999999


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhh
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKME  201 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (403)
                      ++++ ++..   .. ++|++|++++|.+++...   +                                           
T Consensus        96 ~l~~-l~~~---~~-~~L~~L~L~~N~l~~~~~---l-------------------------------------------  124 (263)
T 1xeu_A           96 RLKN-LNGI---PS-ACLSRLFLDNNELRDTDS---L-------------------------------------------  124 (263)
T ss_dssp             CCSC-CTTC---CC-SSCCEEECCSSCCSBSGG---G-------------------------------------------
T ss_pred             ccCC-cCcc---cc-CcccEEEccCCccCCChh---h-------------------------------------------
Confidence            8865 3332   22 889999999998876411   1                                           


Q ss_pred             hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCC
Q 015663          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI  269 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  269 (403)
                      ..+++|+.|++++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++|++++..
T Consensus       125 ~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          125 IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            1267889999999999854 4 588899999999999999855  67889999999999999998653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=1.9e-18  Score=147.23  Aligned_cols=155  Identities=23%  Similarity=0.264  Sum_probs=128.5

Q ss_pred             ccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCC
Q 015663           59 FVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPS  138 (403)
Q Consensus        59 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~  138 (403)
                      ...+++|++|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..+..+  ..+++
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~  113 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTS  113 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTT
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--cCCCC
Confidence            356788999999999999 677 68999999999999997765  3478899999999999999987777766  88999


Q ss_pred             ccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCc-c
Q 015663          139 LRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNK-F  217 (403)
Q Consensus       139 L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l  217 (403)
                      |++|++++|.+++..+..+                                            ..+++|+.|++++|. +
T Consensus       114 L~~L~Ls~n~i~~~~~~~l--------------------------------------------~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A          114 LTLLDISHSAHDDSILTKI--------------------------------------------NTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             CCEEECCSSBCBGGGHHHH--------------------------------------------TTCSSCCEEECCSCTBC
T ss_pred             CCEEEecCCccCcHhHHHH--------------------------------------------hhCCCCCEEEccCCCCc
Confidence            9999999999986544331                                            126889999999998 6


Q ss_pred             cccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCC
Q 015663          218 QGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG  267 (403)
Q Consensus       218 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  267 (403)
                      + .+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus       150 ~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          150 T-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             C-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             c-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            5 566 68899999999999999985 44 68899999999999999864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=8.5e-20  Score=185.20  Aligned_cols=134  Identities=15%  Similarity=0.099  Sum_probs=50.8

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      +.++.|+|.+|.+......   .++.++|+.| .+..++++.|.+. ..|+.|..+..|+.|+|++|++. .+|..+.++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~-~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l  246 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA---LLQHKKLSQY-SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKY  246 (727)
T ss_dssp             ------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC
T ss_pred             CccceEEeeCCCCCcchhh---HhhcCccCcc-cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCC
Confidence            4566777777777665331   1222233222 2233444444444 44555666666666666666665 555555566


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  150 (403)
                      ++|++|+|++|.|+ .+|..|..+++|++|+|++|.++ .+|..+  +.+++|++|+|++|.++
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCSEEECCSSCCC
T ss_pred             CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCCEEECCCCCCC
Confidence            66666666666665 35555666666666666666664 445443  55666666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=6e-21  Score=188.01  Aligned_cols=89  Identities=28%  Similarity=0.340  Sum_probs=70.6

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCC-CccccCCCCCCEE
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHI-PTQLTSLKYLSVL  282 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L  282 (403)
                      +++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            567788888888888 777788888888888888888874 56 6788888888888888888766 7888888888888


Q ss_pred             eCcCCcCccCCCC
Q 015663          283 NLSYNQFEGPIPR  295 (403)
Q Consensus       283 ~L~~N~l~~~ip~  295 (403)
                      ++++|++++.+|.
T Consensus       539 ~L~~N~l~~~~~~  551 (567)
T 1dce_A          539 NLQGNSLCQEEGI  551 (567)
T ss_dssp             ECTTSGGGGSSSC
T ss_pred             EecCCcCCCCccH
Confidence            8888888866553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=7.8e-20  Score=182.23  Aligned_cols=116  Identities=14%  Similarity=0.032  Sum_probs=69.0

Q ss_pred             CCCCccEEECCCCCCCCcCC-------CCCCCCCeEeCCCC-----------------CCCCEEECcCCcCcccCCcccc
Q 015663            5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGKIPRKFV   60 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n-----------------~~L~~L~Ls~n~l~~~~p~~~~   60 (403)
                      .+++|++|+|++|.+++...       ..+++|+.|+++.|                 ++|+.|++++|.+.+ +|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            57889999999998765521       45788888888766                 678889998888774 566666


Q ss_pred             CCCCcCEEEccCCcCc---CCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccc
Q 015663           61 KSCNLTSLNLNGNRLE---GPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR  122 (403)
Q Consensus        61 ~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  122 (403)
                      .+++|++|+++.....   +..+..+..+++|+.|+++++... .+|..+..+++|++|++++|.
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCc
Confidence            7777777777642211   122223344444444444443222 133334444444444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=8.6e-20  Score=181.92  Aligned_cols=139  Identities=16%  Similarity=0.043  Sum_probs=72.0

Q ss_pred             ccEEECCCCC-CCCcC-C---CCCCCCCeEeCCCC-----------------CCCCEEECcCCcCc----ccCCccccCC
Q 015663            9 LYYLDLSNNF-LTNIE-Y---FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFN----GKIPRKFVKS   62 (403)
Q Consensus         9 L~~L~Ls~n~-l~~~~-~---~~~~~L~~L~l~~n-----------------~~L~~L~Ls~n~l~----~~~p~~~~~l   62 (403)
                      |++|+|++|. ++... +   ..+++|+.|+|++|                 ++|+.|++++|.++    +.++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            6666666554 11100 0   24556666666665                 45666666666665    2233344456


Q ss_pred             CCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCC---cCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCc
Q 015663           63 CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN---DNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL  139 (403)
Q Consensus        63 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  139 (403)
                      ++|++|++++|.+. .+|..+.++++|+.|+++.....   ...+..+..+++|+.|.++++.. +.++..+  ..+++|
T Consensus       220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~--~~~~~L  295 (592)
T 3ogk_B          220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILF--PFAAQI  295 (592)
T ss_dssp             TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGG--GGGGGC
T ss_pred             CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHH--hhcCCC
Confidence            66666666666665 35555666666666666542221   12223445556666666655422 2233322  445566


Q ss_pred             cEEEccCCcccc
Q 015663          140 RIIDLSHNEFTG  151 (403)
Q Consensus       140 ~~L~l~~n~l~~  151 (403)
                      ++|++++|.+++
T Consensus       296 ~~L~Ls~~~l~~  307 (592)
T 3ogk_B          296 RKLDLLYALLET  307 (592)
T ss_dssp             CEEEETTCCCCH
T ss_pred             cEEecCCCcCCH
Confidence            666666655443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=2.2e-18  Score=146.16  Aligned_cols=91  Identities=21%  Similarity=0.339  Sum_probs=67.7

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  283 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  283 (403)
                      +++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..+.++++|+.|+|++|++++..|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            45566667777777666677777777777888888777766666677777888888888887777777777777888888


Q ss_pred             CcCCcCccCCC
Q 015663          284 LSYNQFEGPIP  294 (403)
Q Consensus       284 L~~N~l~~~ip  294 (403)
                      +++|++++..+
T Consensus       133 L~~N~l~c~c~  143 (192)
T 1w8a_A          133 LASNPFNCNCH  143 (192)
T ss_dssp             CTTCCBCCSGG
T ss_pred             eCCCCccCcCc
Confidence            88887776544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=4.7e-20  Score=181.64  Aligned_cols=197  Identities=16%  Similarity=0.148  Sum_probs=138.8

Q ss_pred             CCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCc-------------CcCCCCccccCCCCCCEEE-ccCCcCC
Q 015663           35 FDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNR-------------LEGPLPPSLVNCHHLEVLN-VGNNQIN  100 (403)
Q Consensus        35 l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-l~~n~l~  100 (403)
                      +..++.|+.|+|++|.++ .+|+.++.+++|+.|++++|.             ..+..|..++++++|+.|+ ++.|.+.
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            455577788888888886 778888888888888886664             4556667777777777777 5555332


Q ss_pred             cCCCh------hccC--CCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcc
Q 015663          101 DNFPN------WLEI--LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV  172 (403)
Q Consensus       101 ~~~p~------~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~  172 (403)
                      . ++.      .+..  ...|+.|++++|.+++ +|. +  ..+++|+.|++++|.++. +|.. +              
T Consensus       424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~--~~l~~L~~L~Ls~N~l~~-lp~~-~--------------  482 (567)
T 1dce_A          424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-L--EQLLLVTHLDLSHNRLRA-LPPA-L--------------  482 (567)
T ss_dssp             H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-G--GGGTTCCEEECCSSCCCC-CCGG-G--------------
T ss_pred             h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-c--cccccCcEeecCcccccc-cchh-h--------------
Confidence            2 110      0111  1257888888888865 554 3  778888888888888873 3332 1              


Q ss_pred             cccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc-CccccC
Q 015663          173 EVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI-PSSLRN  251 (403)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~  251 (403)
                                                   ..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..++.
T Consensus       483 -----------------------------~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          483 -----------------------------AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             -----------------------------GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             -----------------------------hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence                                         126778888888888885 66 7888888888888888888665 888888


Q ss_pred             CCCCCEEeccCCcCCCCCCcc---ccCCCCCCEEeC
Q 015663          252 LTEVESLDLSSNMLVGHIPTQ---LTSLKYLSVLNL  284 (403)
Q Consensus       252 l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L  284 (403)
                      +++|+.|+|++|++++.+|..   +..+++|+.||+
T Consensus       532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            888888888888888665432   234778888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=6.9e-17  Score=136.85  Aligned_cols=134  Identities=22%  Similarity=0.216  Sum_probs=117.4

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCc-cccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPR-KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~   88 (403)
                      +.+++++|.++.++.....           ++++|++++|.+++..+. .|+.+++|++|++++|++++..|..|.++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~-----------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL-----------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT-----------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEcCCCCcCcCccCCCC-----------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence            6899999999877543222           348889999999866664 4899999999999999999888999999999


Q ss_pred             CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchh
Q 015663           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTG  156 (403)
Q Consensus        89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  156 (403)
                      |++|++++|++++..+..|..+++|++|++++|++++..|..+  ..+++|++|++++|.+++..+..
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~  145 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGH
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcch
Confidence            9999999999999888889999999999999999998888866  88999999999999999876543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=2.9e-18  Score=173.99  Aligned_cols=137  Identities=22%  Similarity=0.210  Sum_probs=103.5

Q ss_pred             CCccEEECCCCCCCCcC---------CCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcC
Q 015663            7 ATLYYLDLSNNFLTNIE---------YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEG   77 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~---------~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~   77 (403)
                      ..++.++|+.|.|.+..         +..+..+.        .|+.|+|++|.+. .+|..++.+++|++|+|++|+++ 
T Consensus       191 ~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~--------~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-  260 (727)
T 4b8c_D          191 ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQ--------LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-  260 (727)
T ss_dssp             -------------------------------CCC--------CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-
T ss_pred             hHhhcCccCcccccCccccccceecChhhhccCC--------CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-
Confidence            34567777777776643         23344444        4599999999998 78888889999999999999999 


Q ss_pred             CCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhh
Q 015663           78 PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGY  157 (403)
Q Consensus        78 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  157 (403)
                      .+|..|+++++|++|+|++|.|+. +|..|+.+++|++|+|++|.++ .+|..+  +.+++|++|+|++|.+++.++..+
T Consensus       261 ~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~-~lp~~~--~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT-TLPWEF--GNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCC-CCCSST--TSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCC-ccChhh--hcCCCccEEeCCCCccCCCChHHH
Confidence            899999999999999999999995 7999999999999999999995 677765  899999999999999998777553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.70  E-value=5.6e-19  Score=176.06  Aligned_cols=283  Identities=14%  Similarity=0.078  Sum_probs=158.5

Q ss_pred             CCCCccEEECCCCCCCCcCC-------CCCCCCCeEeCCCC----------------CCCCEEECcCCcCcccCCccccC
Q 015663            5 GIATLYYLDLSNNFLTNIEY-------FPPTNMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVK   61 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~-------~~~~~L~~L~l~~n----------------~~L~~L~Ls~n~l~~~~p~~~~~   61 (403)
                      .+++|++|+|++|.+++..+       ..+++|+.|++++|                ++|++|++++|...+.+|..+..
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~  233 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR  233 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence            46778888888887665332       35667888888776                67888888877222235555566


Q ss_pred             CCCcCEEEccCCc--------------------------Cc----CCCCccccCCCCCCEEEccCCcCCcCCC-hhccCC
Q 015663           62 SCNLTSLNLNGNR--------------------------LE----GPLPPSLVNCHHLEVLNVGNNQINDNFP-NWLEIL  110 (403)
Q Consensus        62 l~~L~~L~L~~n~--------------------------l~----~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l  110 (403)
                      +++|++|+++.+.                          +.    +.++..+..+++|++|++++|.++.... ..+..+
T Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~  313 (594)
T 2p1m_B          234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC  313 (594)
T ss_dssp             CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred             CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence            6666666644331                          11    1233333467889999999888765322 235678


Q ss_pred             CCCcEEEcccccccCcCCCCCCccCCCCccEEEccC---------CccccccchhhhhhhhhhcccCCCcccccc--cCC
Q 015663          111 PELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSH---------NEFTGVLLTGYLDNFKAMMHGNNISVEVDY--MTP  179 (403)
Q Consensus       111 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~---------n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~--~~~  179 (403)
                      ++|++|++++| +.......+ ...+++|++|++.+         +.+++.....+...++.|+.+.........  ...
T Consensus       314 ~~L~~L~l~~~-~~~~~l~~l-~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~  391 (594)
T 2p1m_B          314 PKLQRLWVLDY-IEDAGLEVL-ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT  391 (594)
T ss_dssp             TTCCEEEEEGG-GHHHHHHHH-HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred             CCcCEEeCcCc-cCHHHHHHH-HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence            88899988887 322111110 13467788887733         344433322323334444433111000000  000


Q ss_pred             CC-CCCcceEEEEEE------eccc--------hhhhhhcccceEEEcccCcccccCCcccCC-CCCCCEEEecCCCCCC
Q 015663          180 LN-SSNYYESIILTI------KGID--------IKMERILTIFMTIDLSSNKFQGGIPEVVGK-LNLLKGLNISHNNLTG  243 (403)
Q Consensus       180 ~~-~~~~~~~~~~~~------~~~~--------~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~  243 (403)
                      .. ....+..+....      ..+.        ......+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++
T Consensus       392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~  470 (594)
T 2p1m_B          392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD  470 (594)
T ss_dssp             HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred             HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence            00 001122222221      1111        11234467788888876 555544444444 7788888888888765


Q ss_pred             CcCccc-cCCCCCCEEeccCCcCCCCCCc-cccCCCCCCEEeCcCCcCc
Q 015663          244 DIPSSL-RNLTEVESLDLSSNMLVGHIPT-QLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       244 ~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~  290 (403)
                      ..+..+ ..+++|+.|++++|.+++..+. .+..+++|+.|++++|+++
T Consensus       471 ~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            444444 5678888888888887544333 3445778888888888774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=5.5e-16  Score=131.30  Aligned_cols=131  Identities=20%  Similarity=0.157  Sum_probs=114.2

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L   89 (403)
                      +.+++++|.++.++.....           +|+.|++++|.++ .+|..|.++++|++|++++|++++..+..|.++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~~~-----------~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPR-----------DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCT-----------TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEcCCCCCCcCCCCCCC-----------CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            6789999999987643332           3478899999998 788999999999999999999998777889999999


Q ss_pred             CEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663           90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (403)
Q Consensus        90 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  154 (403)
                      ++|++++|.+++..|..|..+++|++|++++|.+++..+..+  ..+++|+.|++++|.+.....
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGG
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCc
Confidence            999999999999888899999999999999999976555544  789999999999999986544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=1.1e-18  Score=174.07  Aligned_cols=305  Identities=16%  Similarity=0.126  Sum_probs=160.3

Q ss_pred             CCCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCC---------------CCCCEEECcCCcCcccCCcccc----C
Q 015663            5 GIATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN---------------LTHKVLDMRMNNFNGKIPRKFV----K   61 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n---------------~~L~~L~Ls~n~l~~~~p~~~~----~   61 (403)
                      .+++|++|+|++|.+++..+    ..+++|+.|++++|               ++|++|++++|.+++..+..+.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            46788888888888776543    25778888888876               7888888888887755444333    5


Q ss_pred             CCCcCEEEccCCc--CcC-CCCccccCCCCCCEEEccCC-cCCcCCChhccCCCCCcEEEccccc---------------
Q 015663           62 SCNLTSLNLNGNR--LEG-PLPPSLVNCHHLEVLNVGNN-QINDNFPNWLEILPELQVLILRSNR---------------  122 (403)
Q Consensus        62 l~~L~~L~L~~n~--l~~-~~p~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~---------------  122 (403)
                      +++|++|++++|.  ++. .++..+.++++|++|++++| .+.+ +|..+..+++|+.|+++.+.               
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence            6688888888876  211 11112344678888888776 2222 33333344444444432221               


Q ss_pred             -----------ccCcCCCCC--CccCCCCccEEEccCCccccccchh------------------------hhhhhhhhc
Q 015663          123 -----------FWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLTG------------------------YLDNFKAMM  165 (403)
Q Consensus       123 -----------l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~~l~~L~  165 (403)
                                 +.......+  .+..+++|++|++++|.+++.....                        ....++.|+
T Consensus       262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred             hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence                       000000000  0012344555555555443322211                        122233333


Q ss_pred             ccCCCcc------cccccCC-----C-CCCCcceEEEEEEeccchh----hhhhcccceEEEcc--c----Cccccc---
Q 015663          166 HGNNISV------EVDYMTP-----L-NSSNYYESIILTIKGIDIK----MERILTIFMTIDLS--S----NKFQGG---  220 (403)
Q Consensus       166 ~~~~~~~------~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls--~----n~l~~~---  220 (403)
                      .+.....      ....+..     . .....++.+......+...    ....+++|+.|+++  +    +.+++.   
T Consensus       342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~  421 (594)
T 2p1m_B          342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD  421 (594)
T ss_dssp             EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred             EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence            3322000      0000000     0 0011122333333333321    22246788888888  3    445521   


Q ss_pred             --CCcccCCCCCCCEEEecCCCCCCCcCccccC-CCCCCEEeccCCcCCCCCCccc-cCCCCCCEEeCcCCcCccCCCC-
Q 015663          221 --IPEVVGKLNLLKGLNISHNNLTGDIPSSLRN-LTEVESLDLSSNMLVGHIPTQL-TSLKYLSVLNLSYNQFEGPIPR-  295 (403)
Q Consensus       221 --~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~ip~-  295 (403)
                        ++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. 
T Consensus       422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~  500 (594)
T 2p1m_B          422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA  500 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred             hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence              122245677888888876 565444444544 7889999999998876555444 6688999999999988543221 


Q ss_pred             C-CCCCCCCCCcCCCCC
Q 015663          296 G-SQFNTFPNDSYVGNS  311 (403)
Q Consensus       296 ~-~~~~~~~~~~~~gn~  311 (403)
                      . ..+..+..+.+.+|+
T Consensus       501 ~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          501 NASKLETMRSLWMSSCS  517 (594)
T ss_dssp             TGGGGGGSSEEEEESSC
T ss_pred             HHHhCCCCCEEeeeCCC
Confidence            1 123345555555553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=1.1e-16  Score=147.54  Aligned_cols=207  Identities=11%  Similarity=0.097  Sum_probs=134.8

Q ss_pred             CCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc---CcCCCCCCccCCCC
Q 015663           62 SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW---GPIGENTTIVPFPS  138 (403)
Q Consensus        62 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~l~~  138 (403)
                      +++|++++|++ .++...+.+|.+|++|+.+++++|.+..+.+.+|..+.++..+....+...   ..+ ....|..+.+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i-~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW-EHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT-TTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc-cccccccccc
Confidence            88888888877 777556667888888888888888877777777777776666665543210   011 1112344455


Q ss_pred             cc-EEEccCCccccccchhhhhh---hhhhcccCCCcccccccCCCCCCCcceEEEEEEecc-chhhhhhcccceEEEcc
Q 015663          139 LR-IIDLSHNEFTGVLLTGYLDN---FKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGI-DIKMERILTIFMTIDLS  213 (403)
Q Consensus       139 L~-~L~l~~n~l~~~~~~~~~~~---l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~L~Ls  213 (403)
                      |+ .+++....   ..+...+..   ...+..+..   .. .                +... ...+...+++|+.++++
T Consensus       178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~---~~-~----------------l~~~~~~~l~~~~~~L~~l~L~  234 (329)
T 3sb4_A          178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTI---EG-K----------------LDNADFKLIRDYMPNLVSLDIS  234 (329)
T ss_dssp             CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEE---EE-C----------------CCHHHHHHHHHHCTTCCEEECT
T ss_pred             cceeEEecCCC---cHHHHHhhcccCccccceEEE---ee-e----------------ecHHHHHHHHHhcCCCeEEECC
Confidence            55 34443221   111111111   111111111   00 0                0000 01122337899999999


Q ss_pred             cCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCC-EEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015663          214 SNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVE-SLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP  292 (403)
Q Consensus       214 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  292 (403)
                      +|+++...+..|.++++|+.++|.+| ++...+.+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++++|.++ .
T Consensus       235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~  311 (329)
T 3sb4_A          235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-T  311 (329)
T ss_dssp             TBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-E
T ss_pred             CCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-c
Confidence            99999777788999999999999998 7756678899999999 999998 777677899999999999999999997 4


Q ss_pred             CCCC
Q 015663          293 IPRG  296 (403)
Q Consensus       293 ip~~  296 (403)
                      |+..
T Consensus       312 I~~~  315 (329)
T 3sb4_A          312 LGDE  315 (329)
T ss_dssp             ECTT
T ss_pred             cchh
Confidence            5543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=8.6e-17  Score=133.22  Aligned_cols=136  Identities=21%  Similarity=0.088  Sum_probs=108.6

Q ss_pred             CCCCccEEECCCCCCC-CcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663            5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~   83 (403)
                      ..++|++|++++|.++ +.+|..+.++..|        ++|++++|.+++.  ..+..+++|++|++++|++++.+|..+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L--------~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNL--------EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGC--------CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCC--------CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence            3478999999999988 5555555555555        8899999998855  788889999999999999997688888


Q ss_pred             cCCCCCCEEEccCCcCCcCCC-hhccCCCCCcEEEcccccccCcCC---CCCCccCCCCccEEEccCCccccc
Q 015663           84 VNCHHLEVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSHNEFTGV  152 (403)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~  152 (403)
                      .++++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+   ..+  ..+++|++|++++|.+...
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF--KLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHH--TTCSSCCEETTEETTSCBC
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHH--HhCccCcEecCCCCChhhc
Confidence            889999999999999988422 678889999999999999865443   233  7788999999999887654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=1.2e-16  Score=132.41  Aligned_cols=43  Identities=23%  Similarity=0.165  Sum_probs=21.5

Q ss_pred             ccCCCCCCCEEEecCCCCCCCcC---ccccCCCCCCEEeccCCcCC
Q 015663          224 VVGKLNLLKGLNISHNNLTGDIP---SSLRNLTEVESLDLSSNMLV  266 (403)
Q Consensus       224 ~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~Ls~n~l~  266 (403)
                      .+..+++|+.|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus       115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            34445555555555555553322   24455555555555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=1.1e-15  Score=127.67  Aligned_cols=133  Identities=19%  Similarity=0.148  Sum_probs=113.5

Q ss_pred             ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~   88 (403)
                      .+.++++++.++.++....+           +|+.|++++|.+++..+..|..+++|++|++++|++++..+..|.++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~~-----------~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIPS-----------SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEecCCCCccCCCCCCC-----------CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc
Confidence            46889999999887643333           3478899999999777778899999999999999999766667899999


Q ss_pred             CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (403)
Q Consensus        89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  154 (403)
                      |++|++++|.+++..+..+..+++|++|++++|++++..+..+  ..+++|++|++++|.+.+..+
T Consensus        78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred             cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence            9999999999999777788999999999999999976555444  779999999999999987654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=8.3e-17  Score=130.49  Aligned_cols=107  Identities=22%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             CEEECcCCcCc-ccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           42 KVLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        42 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      +.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+.++++|++|++++|.+++.+|..+..+++|++|++++
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~   97 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG   97 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence            44445555444 34444444555555555555555432  3444455555555555555444444444455555555555


Q ss_pred             ccccCc-CCCCCCccCCCCccEEEccCCccccc
Q 015663          121 NRFWGP-IGENTTIVPFPSLRIIDLSHNEFTGV  152 (403)
Q Consensus       121 n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~  152 (403)
                      |++++. .+..+  ..+++|++|++++|.+++.
T Consensus        98 N~i~~~~~~~~~--~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           98 NKIKDLSTIEPL--KKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             SCCCSHHHHGGG--GGCTTCCEEECTTCGGGGS
T ss_pred             CcCCChHHHHHH--hhCCCCCEEeCcCCcccch
Confidence            554331 11222  4445555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=2e-15  Score=127.80  Aligned_cols=107  Identities=25%  Similarity=0.359  Sum_probs=96.2

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      +++++++|.++ .+|..+.  .+|++|++++|+++ .+|..|.++++|+.|++++|.|++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            67999999998 6776654  58999999999999 78899999999999999999999988889999999999999999


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  154 (403)
                      ++++..+..+  ..+++|++|++++|.+++..+
T Consensus        89 ~l~~i~~~~f--~~l~~L~~L~L~~N~l~~~~~  119 (193)
T 2wfh_A           89 RLRCIPPRTF--DGLKSLRLLSLHGNDISVVPE  119 (193)
T ss_dssp             CCCBCCTTTT--TTCTTCCEEECCSSCCCBCCT
T ss_pred             ccCEeCHHHh--CCCCCCCEEECCCCCCCeeCh
Confidence            9988777666  899999999999999986544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=3.8e-16  Score=126.54  Aligned_cols=130  Identities=22%  Similarity=0.161  Sum_probs=109.1

Q ss_pred             CCCCccEEECCCCCCC-CcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663            5 GIATLYYLDLSNNFLT-NIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~-~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~   83 (403)
                      ..++|+.|++++|.++ +..|..+.++..|        ++|++++|.+++.  ..++.+++|++|++++|++++.+|..+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L--------~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~   84 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEEL--------EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA   84 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTC--------CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCC--------cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence            3478999999999998 5666555555554        9999999999865  788999999999999999997788888


Q ss_pred             cCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCC---CCCCccCCCCccEEEccC
Q 015663           84 VNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIG---ENTTIVPFPSLRIIDLSH  146 (403)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~  146 (403)
                      .++++|++|++++|.+++. .+..+..+++|++|++++|.+++..+   ..  +..+++|++||+++
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~~~l~~L~~L~l~d  149 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV--FKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHH--HHHCTTCCEETTBC
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHH--HHHCCCcccccCCC
Confidence            8899999999999999984 34789999999999999999976544   22  37789999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=4.4e-15  Score=123.97  Aligned_cols=91  Identities=26%  Similarity=0.277  Sum_probs=68.8

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  283 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  283 (403)
                      +++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            45566666666666655556677788888888888888866666677888888888888888866666677788888888


Q ss_pred             CcCCcCccCCC
Q 015663          284 LSYNQFEGPIP  294 (403)
Q Consensus       284 L~~N~l~~~ip  294 (403)
                      +++|++++..|
T Consensus       131 l~~N~~~~~~~  141 (177)
T 2o6r_A          131 LHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCBCCCHH
T ss_pred             ecCCCeeccCc
Confidence            88888876555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=2.2e-14  Score=132.04  Aligned_cols=225  Identities=13%  Similarity=0.016  Sum_probs=141.1

Q ss_pred             CCCCEEECcCCcCc--ccCCccccCCCCcCEEEccCCcCcCCCCccccC--------CCCCCEEEccCCcCCcCCChhcc
Q 015663           39 LTHKVLDMRMNNFN--GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVN--------CHHLEVLNVGNNQINDNFPNWLE  108 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~l~~n~l~~~~p~~~~  108 (403)
                      ++|+.|||++|.+.  ...+..   ++.++.+.+..|.+   .+.+|.+        +++|+.+++.+ .++.+.+.+|.
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             ccCeEEecCcceeEEecCcccc---cccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            56788888888887  222222   22345556665543   3356777        99999999999 88887788999


Q ss_pred             CCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc----cccchhhhhhhhhhcccCCCcccccccCCCCCCC
Q 015663          109 ILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT----GVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSN  184 (403)
Q Consensus       109 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~  184 (403)
                      .+++|+.+++.+|.+....+..+  .+..++..+..+.+...    .... ..+.++..+...       ..+...    
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF--~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~L~~~-------i~~~~~----  187 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEAL--ADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEPLETT-------IQVGAM----  187 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSS--CTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCCCEEE-------EEECTT----
T ss_pred             cCcccceEEcCCCCccccchhhh--cCCCceEEecCcchhhhhccccccc-ccccccccccee-------EEecCC----
Confidence            99999999999998865444433  66677777766553221    0000 001111111100       000000    


Q ss_pred             cceEEEEEEeccchhhhh---hcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEecc
Q 015663          185 YYESIILTIKGIDIKMER---ILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLS  261 (403)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  261 (403)
                               ..+....+.   ...+++.+.+.++-...........+++|+.++|++|+++...+.+|.++++|+.+++.
T Consensus       188 ---------~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          188 ---------GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             ---------CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ---------CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                     001111111   14556677776653221111111237899999999999996666789999999999999


Q ss_pred             CCcCCCCCCccccCCCCCC-EEeCcCCcCccCCCCC
Q 015663          262 SNMLVGHIPTQLTSLKYLS-VLNLSYNQFEGPIPRG  296 (403)
Q Consensus       262 ~n~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~ip~~  296 (403)
                      +| +....+.+|.++.+|+ .+++.+ .++ .|+..
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~  291 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFG  291 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTT
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cce-EEchh
Confidence            98 7767788999999999 999988 665 45544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=4e-15  Score=124.13  Aligned_cols=62  Identities=13%  Similarity=0.133  Sum_probs=26.6

Q ss_pred             cCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccc
Q 015663           84 VNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT  150 (403)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  150 (403)
                      .++++|+.|++++|.++. +|......++|++|++++|.+++.  ..+  ..+++|++|++++|.++
T Consensus        16 ~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCC
T ss_pred             CCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCccc
Confidence            344444444444444443 222111122455555555544332  112  44455555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=3.4e-15  Score=124.51  Aligned_cols=134  Identities=19%  Similarity=0.134  Sum_probs=105.9

Q ss_pred             CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   84 (403)
                      ++++|++|++++|.++.++.  +..+.       ++|++|++++|.+++.  +.|..+++|++|++++|++++..+..|.
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~--~~~~~-------~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN--LGATL-------DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC--GGGGT-------TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             CcCCceEEEeeCCCCchhHH--hhhcC-------CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhh
Confidence            56789999999999986621  21211       2458899999999864  6888999999999999999965445568


Q ss_pred             CCCCCCEEEccCCcCCcCCCh--hccCCCCCcEEEcccccccCcCCCC--CCccCCCCccEEEccCCcccc
Q 015663           85 NCHHLEVLNVGNNQINDNFPN--WLEILPELQVLILRSNRFWGPIGEN--TTIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~l~~n~l~~  151 (403)
                      ++++|++|++++|.++. +|.  .+..+++|+.|++++|.++. +|..  ..+..+++|+.||++.|....
T Consensus        86 ~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             HCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             cCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999999999976 565  78899999999999999864 4442  013788999999999998764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.55  E-value=3.9e-14  Score=117.30  Aligned_cols=107  Identities=20%  Similarity=0.171  Sum_probs=78.8

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      +.+++++|.++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|++++|+|++..+..|..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            66777777776 4665553  67778888888888666777778888888888888887766666777888888888888


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCcccccc
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  153 (403)
                      ++++..+..+  ..+++|++|++++|.++...
T Consensus        89 ~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAF--DNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTT--TTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHh--cCCCCCCEEEeCCCCCCCCc
Confidence            8766555444  67788888888888777554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=7.2e-14  Score=115.69  Aligned_cols=108  Identities=22%  Similarity=0.186  Sum_probs=94.4

Q ss_pred             CccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~   87 (403)
                      ..+.+++++|.++.++....           ++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~-----------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~   78 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP-----------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT   78 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC-----------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCCEEEeCCCCcCccCccCC-----------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence            35789999999998764332           2348889999999988899999999999999999999977777789999


Q ss_pred             CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCc
Q 015663           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP  126 (403)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  126 (403)
                      +|++|++++|++++..+..|..+++|++|++++|.+...
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            999999999999997777899999999999999998644

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=5.5e-17  Score=138.23  Aligned_cols=85  Identities=20%  Similarity=0.244  Sum_probs=41.9

Q ss_pred             CCCcCEEEccCCcCcCCCCc------cccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccC
Q 015663           62 SCNLTSLNLNGNRLEGPLPP------SLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVP  135 (403)
Q Consensus        62 l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  135 (403)
                      ...++.++++.+.+++..|.      .|.++++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+  ..
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~--~~   91 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD--AV   91 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--HH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--hc
Confidence            33444444444444444443      55555555555555555555 34 4555555555555555553 233221  33


Q ss_pred             CCCccEEEccCCcccc
Q 015663          136 FPSLRIIDLSHNEFTG  151 (403)
Q Consensus       136 l~~L~~L~l~~n~l~~  151 (403)
                      +++|++|++++|.+++
T Consensus        92 ~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHCSEEEEEEEECCC
T ss_pred             CCcCCEEECcCCcCCc
Confidence            3455555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.53  E-value=4.8e-17  Score=138.58  Aligned_cols=105  Identities=23%  Similarity=0.345  Sum_probs=81.8

Q ss_pred             CCCEEECcCCcCcccCCc------cccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCC
Q 015663           40 THKVLDMRMNNFNGKIPR------KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL  113 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  113 (403)
                      .++.++++.+.+.+..|.      .|..+++|++|++++|++++ +| .+.++++|+.|++++|.++. +|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcC
Confidence            335556666666666555      88889999999999999985 77 88889999999999999985 67777778899


Q ss_pred             cEEEcccccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015663          114 QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus       114 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  151 (403)
                      ++|++++|++++ +| .  +..+++|++|++++|.+++
T Consensus        96 ~~L~L~~N~l~~-l~-~--~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-G--IEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             SEEEEEEEECCC-HH-H--HHHHHHSSEEEESEEECCC
T ss_pred             CEEECcCCcCCc-CC-c--cccCCCCCEEECCCCcCCc
Confidence            999999998865 33 2  3667778888888877764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=8.2e-14  Score=115.75  Aligned_cols=107  Identities=18%  Similarity=0.156  Sum_probs=83.5

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      +.+++++|.++ .+|..+.  ++|++|++++|++++..|..|.++++|++|++++|+|++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67788888886 6666654  68888888888888777778888888888888888888865666778888888888888


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCcccccc
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL  153 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  153 (403)
                      ++++..+..+  ..+++|++|++++|.+....
T Consensus        92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTT--TTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHh--ccccCCCEEEeCCCCccccc
Confidence            8876554434  77888888888888887554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=2.4e-13  Score=112.96  Aligned_cols=106  Identities=20%  Similarity=0.177  Sum_probs=91.7

Q ss_pred             ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCC
Q 015663            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHH   88 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~   88 (403)
                      -+.+++++|.++.++....+           +|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~~-----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIPT-----------DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCCT-----------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CcEEEeCCCCCCccCCCcCC-----------CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            36899999999877653322           3488899999999888999999999999999999999665566899999


Q ss_pred             CCEEEccCCcCCcCCChhccCCCCCcEEEcccccccC
Q 015663           89 LEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG  125 (403)
Q Consensus        89 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  125 (403)
                      |++|++++|.|++..+..|..+++|++|++++|.+..
T Consensus        83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             hhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            9999999999999766679999999999999999854

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.49  E-value=2e-12  Score=121.79  Aligned_cols=241  Identities=10%  Similarity=0.069  Sum_probs=147.7

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      ..++.+.+.+ .++.+....|.+-         +|+.+++..+ ++..-..+|.+ ++|+.+.+.. .++..-+.+|.+|
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~---------~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c  179 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS---------QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYC  179 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC---------CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTC
T ss_pred             CCccEEEECC-ccCEehHhhcccC---------CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCc
Confidence            4555555543 3554444333331         2366666555 55445556666 3677777775 5554555677777


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  166 (403)
                      ++|+.+++.+|.++.+...+|. ..+|+.+.+..+ +. .++.. +|.++++|+.+++..+ ++.....+ +.+ ..|..
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~-aF~~~~~L~~l~l~~~-l~~I~~~a-F~~-~~L~~  252 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQ-AFLKTSQLKTIEIPEN-VSTIGQEA-FRE-SGITT  252 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTT-TTTTCTTCCCEECCTT-CCEECTTT-TTT-CCCSE
T ss_pred             ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhh-HhhCCCCCCEEecCCC-ccCccccc-ccc-CCccE
Confidence            8888888877777775555555 577777777644 32 23222 2467777777777664 33222222 211 11111


Q ss_pred             cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccc-----ccCCcccCCCCCCCEEEecCCCC
Q 015663          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQ-----GGIPEVVGKLNLLKGLNISHNNL  241 (403)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~n~l  241 (403)
                      +..                    ...+..+....+..+++|+.+++.+|.+.     ...+..|.++++|+.++|. +.+
T Consensus       253 i~l--------------------p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i  311 (401)
T 4fdw_A          253 VKL--------------------PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI  311 (401)
T ss_dssp             EEE--------------------ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred             EEe--------------------CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence            111                    00112233445556788888888887664     3556778888888888888 456


Q ss_pred             CCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCc
Q 015663          242 TGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       242 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      +.....+|.++++|+.+++..+ ++.....+|.++ +|+.+++++|.+.
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            6555678888888888888655 665667788888 8888888888665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.44  E-value=5.6e-12  Score=118.76  Aligned_cols=248  Identities=11%  Similarity=0.070  Sum_probs=153.0

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      .+|+.+++..+ ++.+....|.+-         +|+.+++.. .++..-+.+|.++.+|+.+++++|+++.....+|. +
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~---------~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~  202 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNS---------TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y  202 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTC---------CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred             CCccEEEeCCC-ccEECHHhcCCC---------CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence            46888888766 666655444431         235566654 44444556677777777777777777643334444 4


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  166 (403)
                      ++|+.+.+..+ ++.+...+|..+++|+.+++..+ ++ .++.. +|.+ .+|+.+++.+ .++.... ..+.++..|+.
T Consensus       203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~-aF~~-~~L~~i~lp~-~i~~I~~-~aF~~c~~L~~  275 (401)
T 4fdw_A          203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQE-AFRE-SGITTVKLPN-GVTNIAS-RAFYYCPELAE  275 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTT-TTTT-CCCSEEEEET-TCCEECT-TTTTTCTTCCE
T ss_pred             cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccc-cccc-CCccEEEeCC-CccEECh-hHhhCCCCCCE
Confidence            67777777643 55555566677777777777654 22 22222 1233 5666666633 3332222 22444444433


Q ss_pred             cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015663          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP  246 (403)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  246 (403)
                      +........              ......+....+..+++|+.+++. +.++......|.++++|+.+.|..+ ++....
T Consensus       276 l~l~~~~~~--------------~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          276 VTTYGSTFN--------------DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             EEEESSCCC--------------CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred             EEeCCcccc--------------CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence            322000000              000011334456668899999999 4577677788999999999999655 665667


Q ss_pred             ccccCCCCCCEEeccCCcCCCCCCccccCCC-CCCEEeCcCCcCc
Q 015663          247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLK-YLSVLNLSYNQFE  290 (403)
Q Consensus       247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~  290 (403)
                      .+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+.
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            789998 999999999998877778888875 6888888776553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.35  E-value=4.3e-12  Score=117.61  Aligned_cols=107  Identities=18%  Similarity=0.130  Sum_probs=78.0

Q ss_pred             EEECcCC-cCcccCCccccCCCCcCEEEccC-CcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           43 VLDMRMN-NFNGKIPRKFVKSCNLTSLNLNG-NRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        43 ~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      .++++++ .++ .+|. +..+++|++|+|++ |++++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4577776 676 4666 77777888888875 788766666788888888888888888887777778888888888888


Q ss_pred             ccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (403)
Q Consensus       121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  154 (403)
                      |++++..+..+  ..++ |+.|++.+|.+.....
T Consensus        90 N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           90 NALESLSWKTV--QGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGG
T ss_pred             CccceeCHHHc--ccCC-ceEEEeeCCCccCCCc
Confidence            88865444433  3444 8888888888775543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=2.3e-14  Score=133.81  Aligned_cols=165  Identities=16%  Similarity=0.140  Sum_probs=103.1

Q ss_pred             CCCCEEEccCCcCCcCCChhccC-----CCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhh
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEI-----LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNF  161 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  161 (403)
                      ++|+.|++++|.++......+..     .++|++|++++|.+++.....+ ...+++|+.|++++|.++......+...+
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-HHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-HHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            56777777777776533333222     2577777777777643222111 12345778888888877643222211110


Q ss_pred             hhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccccc----CCcccCCCCCCCEEEec
Q 015663          162 KAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNIS  237 (403)
Q Consensus       162 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~  237 (403)
                      .                                       ...+.|+.|+|++|.++..    ++..+...++|++|+|+
T Consensus       151 ~---------------------------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls  191 (372)
T 3un9_A          151 L---------------------------------------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL  191 (372)
T ss_dssp             H---------------------------------------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT
T ss_pred             H---------------------------------------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC
Confidence            0                                       1145688888888887642    34445667888888888


Q ss_pred             CCCCCCC----cCccccCCCCCCEEeccCCcCCCC----CCccccCCCCCCEEeCcCCcCcc
Q 015663          238 HNNLTGD----IPSSLRNLTEVESLDLSSNMLVGH----IPTQLTSLKYLSVLNLSYNQFEG  291 (403)
Q Consensus       238 ~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~  291 (403)
                      +|.+++.    ++..+...++|+.|+|++|.+++.    ++..+...++|++|||++|.++.
T Consensus       192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            8888642    245566778899999999988753    33344556889999999998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=1.7e-14  Score=134.63  Aligned_cols=188  Identities=18%  Similarity=0.149  Sum_probs=97.4

Q ss_pred             CCcCEEEccCCcCcCCCCcccc-----CCCCCCEEEccCCcCCcCCChhc-cCCCCCcEEEcccccccCcCCCCC--Cc-
Q 015663           63 CNLTSLNLNGNRLEGPLPPSLV-----NCHHLEVLNVGNNQINDNFPNWL-EILPELQVLILRSNRFWGPIGENT--TI-  133 (403)
Q Consensus        63 ~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~~~--~~-  133 (403)
                      +.|++|++++|.++......+.     +.++|+.|++++|.++......+ ..+++|+.|++++|.+++.....+  .+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            3455666666655532222221     12456666666666543222222 123456666666666533211111  00 


Q ss_pred             cCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcc
Q 015663          134 VPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLS  213 (403)
Q Consensus       134 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  213 (403)
                      ...++|++|++++|.++......+...+                                        ...+.|++|+|+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L----------------------------------------~~~~~L~~L~Ls  191 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGL----------------------------------------AGNTSVTHLSLL  191 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHH----------------------------------------HTCSSCCEEECT
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHH----------------------------------------hcCCCcCEEeCC
Confidence            1245677777777776543221111111                                        114567777777


Q ss_pred             cCccccc----CCcccCCCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCcCCCCCCccccCCC-----CCC
Q 015663          214 SNKFQGG----IPEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK-----YLS  280 (403)
Q Consensus       214 ~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~  280 (403)
                      +|.+++.    ++..+...++|++|+|++|.+++.    ++..+...++|++|||++|.|+......+..+.     .|+
T Consensus       192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~  271 (372)
T 3un9_A          192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR  271 (372)
T ss_dssp             TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CE
T ss_pred             CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccch
Confidence            7777643    244556667888888888888642    334445567888888888888755444333221     155


Q ss_pred             EEe--CcCCcCc
Q 015663          281 VLN--LSYNQFE  290 (403)
Q Consensus       281 ~L~--L~~N~l~  290 (403)
                      .+.  +..|.++
T Consensus       272 ~l~~ll~~~~~~  283 (372)
T 3un9_A          272 VVVSLTEGTAVS  283 (372)
T ss_dssp             EECCCC----CH
T ss_pred             hhHhhhcCCccC
Confidence            555  5555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=7.1e-12  Score=116.09  Aligned_cols=105  Identities=18%  Similarity=0.119  Sum_probs=91.0

Q ss_pred             cEEECCCC-CCCCcCCCCCCCCCeEeCCCCCCCCEEECcC-CcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663           10 YYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (403)
Q Consensus        10 ~~L~Ls~n-~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~   87 (403)
                      ..++.+++ .++.+++  +..+..|        +.|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|.+++
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L--------~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENL--------TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCC--------SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCe--------eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence            35789988 8988654  6666655        9999996 999988889999999999999999999998888999999


Q ss_pred             CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccC
Q 015663           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWG  125 (403)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  125 (403)
                      +|+.|+|++|+|++..+..+..+. |+.|++.+|.+..
T Consensus        81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999999999999986666666665 9999999999853

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.11  E-value=2.2e-09  Score=101.05  Aligned_cols=86  Identities=12%  Similarity=0.013  Sum_probs=52.2

Q ss_pred             hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663          199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  278 (403)
Q Consensus       199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  278 (403)
                      ..+..+.+|+.+.+..+ ++......|.++.+|+.++|..+ ++.....+|.++.+|+.+++..+ ++.....+|.+|.+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            34444666666666543 44344556667777777777533 54344556667777777777655 55445566777777


Q ss_pred             CCEEeCcCC
Q 015663          279 LSVLNLSYN  287 (403)
Q Consensus       279 L~~L~L~~N  287 (403)
                      |+.+++..+
T Consensus       368 L~~i~lp~~  376 (394)
T 4fs7_A          368 LKKVELPKR  376 (394)
T ss_dssp             CCEEEEEGG
T ss_pred             CCEEEECCC
Confidence            777776543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.02  E-value=4.1e-11  Score=110.92  Aligned_cols=15  Identities=33%  Similarity=0.718  Sum_probs=7.0

Q ss_pred             CCCCCEEeccCCcCC
Q 015663          252 LTEVESLDLSSNMLV  266 (403)
Q Consensus       252 l~~L~~L~Ls~n~l~  266 (403)
                      +++|++|+|+.|.+.
T Consensus       278 ~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          278 LPQLETMDISAGVLT  292 (362)
T ss_dssp             GGGCSEEECCSSCCB
T ss_pred             CCCCCEEECCCCCCC
Confidence            344444444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.90  E-value=8.5e-10  Score=102.09  Aligned_cols=83  Identities=17%  Similarity=0.252  Sum_probs=43.0

Q ss_pred             cccceEEEcccCcccccCCccc---CCCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCcCCCCCCccccC-
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVV---GKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGHIPTQLTS-  275 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-  275 (403)
                      +++|+.|+|++|.+++..+..+   ..+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            3445555555555443222111   1345666667766666542    2233345567777777777766443333332 


Q ss_pred             CCCCCEEeCcCCc
Q 015663          276 LKYLSVLNLSYNQ  288 (403)
Q Consensus       276 l~~L~~L~L~~N~  288 (403)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3456776665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.84  E-value=4.1e-08  Score=92.38  Aligned_cols=268  Identities=12%  Similarity=0.092  Sum_probs=154.0

Q ss_pred             CCCCccEEECCCCCCCCcCC---CCCCCCCeEeCCCC------------CCCCEEECcCC--------------------
Q 015663            5 GIATLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN------------LTHKVLDMRMN--------------------   49 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n------------~~L~~L~Ls~n--------------------   49 (403)
                      ++++|+.+.+.. .++.+..   ..+.+|+.+++..+            .+|+.+.+..+                    
T Consensus        69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~  147 (394)
T 4fs7_A           69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP  147 (394)
T ss_dssp             TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred             CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence            467788888763 3555544   34566777777654            33333333211                    


Q ss_pred             -cCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc----
Q 015663           50 -NFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW----  124 (403)
Q Consensus        50 -~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~----  124 (403)
                       ........+|.++.+|+.+.+.++..+ ....+|.++++|+.+++..+ ++.+...+|..+..|+.+.+..+...    
T Consensus       148 ~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~  225 (394)
T 4fs7_A          148 EGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDF  225 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTT
T ss_pred             ccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehh
Confidence             111122356778888999998766433 55667888888888888765 44444455666665555554332110    


Q ss_pred             --------C-cCCC------CCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEE
Q 015663          125 --------G-PIGE------NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESI  189 (403)
Q Consensus       125 --------~-~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~  189 (403)
                              . .+|.      ...+.....|+.+.+..+... . ....+..+..+.............. ......+..+
T Consensus       226 ~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i-~~~~F~~~~~l~~~~~~~~~i~~~~-F~~~~~L~~i  302 (394)
T 4fs7_A          226 ALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-I-GGSLFYNCSGLKKVIYGSVIVPEKT-FYGCSSLTEV  302 (394)
T ss_dssp             TTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-E-CSCTTTTCTTCCEEEECSSEECTTT-TTTCTTCCEE
T ss_pred             hcccCCCceEEECCCceecccccccccccceeEEcCCCcce-e-eccccccccccceeccCceeecccc-cccccccccc
Confidence                    0 0111      112356678888888765432 1 1112333333322211111000000 0000111111


Q ss_pred             EE--EEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCC
Q 015663          190 IL--TIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG  267 (403)
Q Consensus       190 ~~--~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  267 (403)
                      ..  .+..+....+..+.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++.....+|.++++|+.+++..+ +. 
T Consensus       303 ~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-  378 (394)
T 4fs7_A          303 KLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-  378 (394)
T ss_dssp             EECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-
T ss_pred             ccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-
Confidence            11  223345566777899999999754 66566788999999999999877 66556678999999999999765 33 


Q ss_pred             CCCccccCCCCCCEE
Q 015663          268 HIPTQLTSLKYLSVL  282 (403)
Q Consensus       268 ~~p~~~~~l~~L~~L  282 (403)
                      .+...|.++++|+.+
T Consensus       379 ~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          379 QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGGGBCTTCEEEEE
T ss_pred             EhhheecCCCCCcEE
Confidence            345678888888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.60  E-value=3.7e-06  Score=78.89  Aligned_cols=270  Identities=10%  Similarity=0.099  Sum_probs=133.9

Q ss_pred             CccEEECCCCCCCCcCC---CCCCCCCeEeCCCC----------------CCCCEEECcCCcCcccCCccccCCCCcCEE
Q 015663            8 TLYYLDLSNNFLTNIEY---FPPTNMTQLNFDSN----------------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSL   68 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~---~~~~~L~~L~l~~n----------------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L   68 (403)
                      .|+.+.+-. .++.+..   ..+.+|+.+.+..+                .+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus        65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            366666653 2554444   34455666655432                33444433332 332344567778888888


Q ss_pred             EccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCc
Q 015663           69 NLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNE  148 (403)
Q Consensus        69 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  148 (403)
                      .+..+. +.....+|.++.+|+.+.+..+ ++.+...+|. ..+|+.+.+..+-. .....  .+....++.......+.
T Consensus       143 ~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~--af~~c~~l~~~~~~~~~  216 (394)
T 4gt6_A          143 TIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTN--AFSECFALSTITSDSES  216 (394)
T ss_dssp             ECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTT--TTTTCTTCCEEEECCSS
T ss_pred             ccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccc--hhhhccccceecccccc
Confidence            887543 3255567888888888888655 4443444554 35677777655422 11111  22444555555443322


Q ss_pred             cccccc---h-------hh--hhhhhhhcccCCCcccccccC--CCCCCCcceEEEE--EEeccchhhhhhcccceEEEc
Q 015663          149 FTGVLL---T-------GY--LDNFKAMMHGNNISVEVDYMT--PLNSSNYYESIIL--TIKGIDIKMERILTIFMTIDL  212 (403)
Q Consensus       149 l~~~~~---~-------~~--~~~l~~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~L  212 (403)
                      ......   .       ..  ......+..... ......+.  .......+..+..  ....+....+..+..|+.+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-p~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l  295 (394)
T 4gt6_A          217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-PNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEF  295 (394)
T ss_dssp             SCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-CTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cccccceeecccccccccccccccccccceEEc-CCcceEcccceeeecccccEEecccccceecCcccccccccccccC
Confidence            111000   0       00  000000000000 00000000  0000000111110  011122334445677777777


Q ss_pred             ccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcC
Q 015663          213 SSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF  289 (403)
Q Consensus       213 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l  289 (403)
                      . +.++......|.++.+|+.++|..+ ++.....+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++.++..
T Consensus       296 ~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          296 S-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             C-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             C-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            5 3444455566777788888888654 54344567777788888887544 5545566778888888888777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.49  E-value=1.8e-08  Score=84.13  Aligned_cols=63  Identities=25%  Similarity=0.306  Sum_probs=32.2

Q ss_pred             CCCCCEEEecCCCCCCC----cCccccCCCCCCEEec--cCCcCCCC----CCccccCCCCCCEEeCcCCcCc
Q 015663          228 LNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDL--SSNMLVGH----IPTQLTSLKYLSVLNLSYNQFE  290 (403)
Q Consensus       228 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~  290 (403)
                      .++|++|+|++|.|...    +...+...++|++|+|  ++|.+...    +...+...+.|++|++++|.+.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            34455555555555421    2334444555666666  55655533    2233344456666666666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.44  E-value=8.3e-06  Score=76.47  Aligned_cols=88  Identities=8%  Similarity=0.102  Sum_probs=64.0

Q ss_pred             chhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCC
Q 015663          197 DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSL  276 (403)
Q Consensus       197 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  276 (403)
                      ....+..+..|+.+.+..+..+ .....|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.....+|.+|
T Consensus       257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             ccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            3445566778888888765543 556677888889998886 4455455567888889999998764 554556788889


Q ss_pred             CCCCEEeCcCC
Q 015663          277 KYLSVLNLSYN  287 (403)
Q Consensus       277 ~~L~~L~L~~N  287 (403)
                      .+|+.+.+..+
T Consensus       334 ~~L~~i~ip~s  344 (394)
T 4gt6_A          334 EQLERIAIPSS  344 (394)
T ss_dssp             TTCCEEEECTT
T ss_pred             CCCCEEEECcc
Confidence            99999888654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.42  E-value=9.1e-08  Score=79.83  Aligned_cols=116  Identities=18%  Similarity=0.134  Sum_probs=82.8

Q ss_pred             CCCCccEEECCCC-CCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCccc----CCccccCCCCcCEEEccCCcCcCC-
Q 015663            5 GIATLYYLDLSNN-FLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP-   78 (403)
Q Consensus         5 ~~~~L~~L~Ls~n-~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-   78 (403)
                      ..+.|++|+|++| .+.......+..    -+..|++|++|+|++|.+...    +...+...+.|++|+|++|.++.. 
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~----~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAE----ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHH----HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHH----HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            4577888888888 877542100000    122335668999999999743    344556678999999999999843 


Q ss_pred             ---CCccccCCCCCCEEEc--cCCcCCcCC----ChhccCCCCCcEEEccccccc
Q 015663           79 ---LPPSLVNCHHLEVLNV--GNNQINDNF----PNWLEILPELQVLILRSNRFW  124 (403)
Q Consensus        79 ---~p~~~~~l~~L~~L~l--~~n~l~~~~----p~~~~~l~~L~~L~l~~n~l~  124 (403)
                         +...+...++|++|++  ++|.++...    ...+...+.|++|++++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               4566778889999999  889997643    334556689999999999873

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.40  E-value=3.3e-05  Score=71.89  Aligned_cols=85  Identities=12%  Similarity=0.087  Sum_probs=52.1

Q ss_pred             hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCC
Q 015663          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL  279 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  279 (403)
                      .+..+..|+.+.+..+ ++......|.++++|+.+.+.++.++.....+|.++.+|+.+++..+ ++.....+|.+|.+|
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL  335 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence            3344566666666543 33344455667777777777776666444566777777777777543 443445667777777


Q ss_pred             CEEeCcC
Q 015663          280 SVLNLSY  286 (403)
Q Consensus       280 ~~L~L~~  286 (403)
                      +.+.+..
T Consensus       336 ~~i~ip~  342 (379)
T 4h09_A          336 STISYPK  342 (379)
T ss_dssp             CCCCCCT
T ss_pred             CEEEECC
Confidence            7666543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.39  E-value=1.6e-07  Score=82.50  Aligned_cols=66  Identities=29%  Similarity=0.346  Sum_probs=32.2

Q ss_pred             CCCCCCEEEecCCCCCC--CcCccccCCCCCCEEeccCCcCCCCCCccccCCC--CCCEEeCcCCcCccCCC
Q 015663          227 KLNLLKGLNISHNNLTG--DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLK--YLSVLNLSYNQFEGPIP  294 (403)
Q Consensus       227 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~ip  294 (403)
                      ++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|.+++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            34555555555555554  2334444555555555555555533  1122222  55555555555554444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=2.9e-07  Score=80.91  Aligned_cols=99  Identities=23%  Similarity=0.317  Sum_probs=70.3

Q ss_pred             EECcCCcCc---ccCCccccCCCCcCEEEccCCcCcC--CCCccccCCCCCCEEEccCCcCCcCCChhccCCC--CCcEE
Q 015663           44 LDMRMNNFN---GKIPRKFVKSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILP--ELQVL  116 (403)
Q Consensus        44 L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L  116 (403)
                      ++++.|...   +.++-...++++|+.|+|++|++++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            567777433   2222223468899999999999996  4556677899999999999999874  2344444  89999


Q ss_pred             EcccccccCcCCCC-----CCccCCCCccEEEc
Q 015663          117 ILRSNRFWGPIGEN-----TTIVPFPSLRIIDL  144 (403)
Q Consensus       117 ~l~~n~l~~~~~~~-----~~~~~l~~L~~L~l  144 (403)
                      ++++|.+.+.+|..     ..+..+|+|+.||=
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            99999998766531     11367888988853

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.12  E-value=0.00079  Score=62.45  Aligned_cols=87  Identities=11%  Similarity=0.010  Sum_probs=69.0

Q ss_pred             hhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCC
Q 015663          199 KMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKY  278 (403)
Q Consensus       199 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  278 (403)
                      ..+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++.....+|.++.+
T Consensus       234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred             ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence            33445778888888765 55466677888999999999754 55345567889999999999999888677889999999


Q ss_pred             CCEEeCcCC
Q 015663          279 LSVLNLSYN  287 (403)
Q Consensus       279 L~~L~L~~N  287 (403)
                      |+.+++..+
T Consensus       312 L~~i~lp~~  320 (379)
T 4h09_A          312 LSSVTLPTA  320 (379)
T ss_dssp             CCEEECCTT
T ss_pred             CCEEEcCcc
Confidence            999999755

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.09  E-value=6e-07  Score=73.25  Aligned_cols=84  Identities=13%  Similarity=0.091  Sum_probs=69.3

Q ss_pred             ccceEEEcccCcccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCC----CCCCEEeccCC-cCCCCCCccccCCCC
Q 015663          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNL----TEVESLDLSSN-MLVGHIPTQLTSLKY  278 (403)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~n-~l~~~~p~~~~~l~~  278 (403)
                      ..|+.||++++.++..--..+..+++|++|+|++|. +++.--..+..+    ++|+.|+|++| +++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            469999999999987766778899999999999995 775545556654    47999999998 488665566788999


Q ss_pred             CCEEeCcCCc
Q 015663          279 LSVLNLSYNQ  288 (403)
Q Consensus       279 L~~L~L~~N~  288 (403)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999985

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.01  E-value=9.4e-07  Score=72.11  Aligned_cols=92  Identities=12%  Similarity=0.073  Sum_probs=57.0

Q ss_pred             CCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCc-CCcCCChhccCC----CCCcEEEccccc-ccCcCC
Q 015663           55 IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQ-INDNFPNWLEIL----PELQVLILRSNR-FWGPIG  128 (403)
Q Consensus        55 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~~  128 (403)
                      +|.....-..|+.|+++++.++..--..+.++++|++|+|++|. |+...-..+..+    ++|++|++++|. ++..--
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            34433333467888888877775444556778888888888874 554333344443    368888888764 433221


Q ss_pred             CCCCccCCCCccEEEccCCc
Q 015663          129 ENTTIVPFPSLRIIDLSHNE  148 (403)
Q Consensus       129 ~~~~~~~l~~L~~L~l~~n~  148 (403)
                      ..  +..+++|++|+++++.
T Consensus       133 ~~--L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          133 IA--LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HH--GGGCTTCCEEEEESCT
T ss_pred             HH--HhcCCCCCEEECCCCC
Confidence            22  2567888888888864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.20  E-value=7.8e-05  Score=61.90  Aligned_cols=85  Identities=14%  Similarity=0.157  Sum_probs=55.6

Q ss_pred             ccceEEEcccCcccccC----CcccCCCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCc---CCCC----C
Q 015663          205 TIFMTIDLSSNKFQGGI----PEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNM---LVGH----I  269 (403)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~---l~~~----~  269 (403)
                      ..|+.|+|++|.+....    .+.+..-+.|++|+|++|.|...    +...+..-+.|+.|+|++|.   +...    +
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            56788888888887432    33344457788888888888742    23445555678888887653   3321    3


Q ss_pred             CccccCCCCCCEEeCcCCcC
Q 015663          270 PTQLTSLKYLSVLNLSYNQF  289 (403)
Q Consensus       270 p~~~~~l~~L~~L~L~~N~l  289 (403)
                      ...+..-+.|+.|+++.|.+
T Consensus       150 a~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhCCCcCeEeccCCCc
Confidence            34455567788888887765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.15  E-value=0.00097  Score=51.57  Aligned_cols=36  Identities=28%  Similarity=0.333  Sum_probs=18.4

Q ss_pred             CCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcC
Q 015663          254 EVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQF  289 (403)
Q Consensus       254 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l  289 (403)
                      +|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455555555555544444445555555555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.12  E-value=0.00021  Score=59.29  Aligned_cols=112  Identities=12%  Similarity=0.052  Sum_probs=72.9

Q ss_pred             CCccEEECCCC-CCCCcCCC-CCCCCCeEeCCCCCCCCEEECcCCcCccc----CCccccCCCCcCEEEccCCcCcCC--
Q 015663            7 ATLYYLDLSNN-FLTNIEYF-PPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP--   78 (403)
Q Consensus         7 ~~L~~L~Ls~n-~l~~~~~~-~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~--   78 (403)
                      +.|++|+|++| .|...... -..     -|..|++|+.|+|++|.|...    +...+..-+.|++|+|++|.|+..  
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~-----aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIE-----AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHH-----HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHH-----HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            56777787774 66533110 000     122346779999999999843    334455667899999999999843  


Q ss_pred             --CCccccCCCCCCEEEccCCc---CCcC----CChhccCCCCCcEEEcccccc
Q 015663           79 --LPPSLVNCHHLEVLNVGNNQ---INDN----FPNWLEILPELQVLILRSNRF  123 (403)
Q Consensus        79 --~p~~~~~l~~L~~L~l~~n~---l~~~----~p~~~~~l~~L~~L~l~~n~l  123 (403)
                        +..++..-+.|++|+|++|.   +...    +...+..-+.|+.|+++.|..
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence              33456667789999998753   3321    223445557899999987754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.05  E-value=0.0013  Score=50.85  Aligned_cols=55  Identities=25%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             EEECcCCcCc-ccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcC
Q 015663           43 VLDMRMNNFN-GKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQI   99 (403)
Q Consensus        43 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l   99 (403)
                      .++.+++.++ ..+|..+.  .+|++|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455555554 23333221  1355555555555533334445555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.8 bits (221), Expect = 9e-21
 Identities = 62/264 (23%), Positives = 100/264 (37%), Gaps = 8/264 (3%)

Query: 61  KSCNLTSLNLNGNRLEG--PLPPSLVNCHHLEVLNV-GNNQINDNFPNWLEILPELQVLI 117
           ++  + +L+L+G  L    P+P SL N  +L  L + G N +    P  +  L +L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL---LTGYLDNFKAMMHGNNISVEV 174
           +      G I     +    +L  +D S+N  +G L   ++   +       GN IS  +
Sbjct: 108 ITHTNVSGAI--PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 175 DYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL 234
                  S  +    I   +           + +     S     G   V+   +     
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 235 NISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
                N        +     +  LDL +N + G +P  LT LK+L  LN+S+N   G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 295 RGSQFNTFPNDSYVGNSGLCGFPL 318
           +G     F   +Y  N  LCG PL
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 24  YFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL 83
                         +     LD+R N   G +P+   +   L SLN++ N L G + P  
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQG 287

Query: 84  VNCHHLEVLNVGNNQ 98
            N    +V    NN+
Sbjct: 288 GNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 41  HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIN 100
           +        N       K   S NL  L+L  NR+ G LP  L     L  LNV  N + 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 101 DNFPNWLEILPELQVLILRSNRF 123
              P     L    V    +N+ 
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKC 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 2e-17
 Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 14/203 (6%)

Query: 85  NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDL 144
              +LE L   NNQI+D  P    IL  L  L L  N+         T+    +L  +DL
Sbjct: 195 KLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDI----GTLASLTNLTDLDL 248

Query: 145 SHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL 204
           ++N+ + +     L     +  G N    +  +  L +    E      +  DI     L
Sbjct: 249 ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE--NQLEDISPISNL 306

Query: 205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNM 264
                + L  N      P  V  L  L+ L  ++N ++    SSL NLT +  L    N 
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 265 LVGHIPTQLTSLKYLSVLNLSYN 287
           +    P  L +L  ++ L L+  
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 18/125 (14%)

Query: 9   LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTH------------KVLDMRMNNFNGKIP 56
           L  L L  N ++NI              +                  L +  NN +   P
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

Query: 57  RKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVL 116
                   L  L    N++      SL N  ++  L+ G+NQI+D  P  L  L  +  L
Sbjct: 325 --VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 378

Query: 117 ILRSN 121
            L   
Sbjct: 379 GLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 14/97 (14%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV 60
                +  L YL L  N +++I   P +++T+L        + L    N  +        
Sbjct: 301 SPISNLKNLTYLTLYFNNISDIS--PVSSLTKL--------QRLFFANNKVSD--VSSLA 348

Query: 61  KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN 97
              N+  L+   N++    P  L N   +  L + + 
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 56/267 (20%), Positives = 90/267 (33%), Gaps = 39/267 (14%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQ--------- 114
           NLT +N + N+L    P  L N   L  + + NNQI D  P                   
Sbjct: 67  NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 115 ---VLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS 171
              +  L +           + +   S        +    V     L N   +   +  S
Sbjct: 125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184

Query: 172 VEVDYMTPLNSSNYYESIILTIKGI-DIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNL 230
            +V  ++ L      ES+I T   I DI    ILT    + L+ N+ +      +  L  
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 242

Query: 231 LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTS--------------- 275
           L  L++++N ++   P  L  LT++  L L +N +    P    +               
Sbjct: 243 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 276 -----LKYLSVLNLSYNQFEGPIPRGS 297
                LK L+ L L +N      P  S
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISPVSS 327

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.5 bits (171), Expect = 4e-14
 Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 23/288 (7%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLT 66
                LDL NN +T I+     N+  L          L +  N  +   P  F     L 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKISKISPGAFAPLVKLE 82

Query: 67  SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGP 126
            L L+ N+L+  LP  +     L+ L V  N+I     +    L ++ V+ L +N     
Sbjct: 83  RLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

Query: 127 IGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM-MHGNNIS-VEVDYMTPLNSSN 184
             EN        L  I ++    T  +  G   +   + + GN I+ V+   +  LN+  
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198

Query: 185 YYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG- 243
                  +I  +D            + L++NK    +P  +     ++ + + +NN++  
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

Query: 244 -----DIPSSLRNLTEVESLDLSSNMLVGH--IPTQLTSLKYLSVLNL 284
                  P           + L SN +      P+    +   + + L
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 4e-13
 Identities = 48/258 (18%), Positives = 84/258 (32%), Gaps = 33/258 (12%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
            C+L  +  +   LE  +P  L       +L++ NN+I +      + L  L  LIL +N
Sbjct: 9   QCHLRVVQCSDLGLEK-VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLN 181
           +            P   L  + LS N+   +         +  +H N I+          
Sbjct: 66  KISKIS--PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT---------- 113

Query: 182 SSNYYESIILTIKGIDIKMERILTIFMTIDLSS--NKFQGGIPEVVGKLNLLKGLNISHN 239
                         +   +   L   + ++L +   K  G        +  L  + I+  
Sbjct: 114 -------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 160

Query: 240 NLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQF 299
           N+T        +LTE   L L  N +       L  L  L+ L LS+N            
Sbjct: 161 NITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 300 NTFPNDSYVGNSGLCGFP 317
                + ++ N+ L   P
Sbjct: 218 TPHLRELHLNNNKLVKVP 235

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 4e-12
 Identities = 40/278 (14%), Positives = 77/278 (27%), Gaps = 43/278 (15%)

Query: 7   ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI----------- 55
           A    + L  N ++++          L      ++ +  +    F G             
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 56  ------PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEI 109
                 P  F     L +L+L+   L+   P        L+ L + +N +     +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 110 LPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN 169
           L  L  L L  NR               SL  + L  N    V    +   F+ +     
Sbjct: 152 LGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMT 205

Query: 170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLN 229
           + +  + ++ L +        L                  + L+ N +            
Sbjct: 206 LYLFANNLSALPTEALAPLRALQ----------------YLRLNDNPWVCDCR-ARPLWA 248

Query: 230 LLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVG 267
            L+    S + +   +P  L          L++N L G
Sbjct: 249 WLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 42/254 (16%), Positives = 74/254 (29%), Gaps = 21/254 (8%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
               + L+GNR+      S   C +L +L + +N +          L  L+ L L  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
              + +  T      L  + L                           +       L + 
Sbjct: 93  LRSV-DPATFHGLGRLHTLHLDRC--------------------GLQELGPGLFRGLAAL 131

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
            Y       ++ +     R L     + L  N+           L+ L  L +  N +  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFP 303
             P + R+L  + +L L +N L       L  L+ L  L L+ N +         +    
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 304 NDSYVGNSGLCGFP 317
                 +   C  P
Sbjct: 252 KFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 28/164 (17%), Positives = 45/164 (27%), Gaps = 5/164 (3%)

Query: 136 FPSLRIIDLSHNEFTGVLLT-----GYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESII 190
             + + I L  N  + V          L       +         +           S  
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 191 LTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLR 250
             ++ +D      L    T+ L     Q   P +   L  L+ L +  N L      + R
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 251 NLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIP 294
           +L  +  L L  N +          L  L  L L  N+     P
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 6e-04
 Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 7/187 (3%)

Query: 108 EILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG 167
            I    Q + L  NR         +     +L I+ L  N    +    +          
Sbjct: 29  GIPAASQRIFLHGNRISHVPAA--SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 168 NNISVEVDYMTPLNSSNYYESIILTIKG-----IDIKMERILTIFMTIDLSSNKFQGGIP 222
            + + ++  + P           L +       +   + R L     + L  N  Q    
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 223 EVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL 282
           +    L  L  L +  N ++     + R L  ++ L L  N +    P     L  L  L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 283 NLSYNQF 289
            L  N  
Sbjct: 207 YLFANNL 213

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 1e-10
 Identities = 40/284 (14%), Positives = 89/284 (31%), Gaps = 27/284 (9%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNL 70
           LDL+   L       P    +L     L+  V+  R   +F  +   +      +  ++L
Sbjct: 5   LDLTGKNL------HPDVTGRL-----LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDL 53

Query: 71  NGNRLEG-PLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGE 129
           + + +E   L   L  C  L+ L++   +++D   N L     L  L L     +     
Sbjct: 54  SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 113

Query: 130 NTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESI 189
            T +     L  ++LS                 +                 +  +     
Sbjct: 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173

Query: 190 ILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISH-NNLTGDIPSS 248
              +  +D+               S   +    +   +LN L+ L++S   ++  +    
Sbjct: 174 CPNLVHLDLSD-------------SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 220

Query: 249 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP 292
           L  +  +++L +   +  G +     +L +L +    +     P
Sbjct: 221 LGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML-VG 267
           T+DL+       +   +    ++       + +   +         V+ +DLS++++ V 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVS 61

Query: 268 HIPTQLTSLKYLSVLNLSYNQFEGPIPR 295
            +   L+    L  L+L   +   PI  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVN 89

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 26/200 (13%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           + T L+L+ N L      +L+    L  LN+   ++     +    LP L  L L  N+ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL 89

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
                   T+     L +            L G  +  +  + GN +             
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT----------- 138

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                       +   +         + L++N        ++  L  L  L +  N+L  
Sbjct: 139 ------------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185

Query: 244 DIPSSLRNLTEVESLDLSSN 263
            IP        +    L  N
Sbjct: 186 TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 225 VGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL 284
           V K+     +N    NLT  +P  L    +   L LS N+L       L     L+ LNL
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 285 SYNQF 289
              + 
Sbjct: 63  DRAEL 67

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 15/122 (12%)

Query: 11  YLDLSNNFLTNIEYFPP-TNMTQLNFDSNL----------THKVLDMRMNNFNGKIPRKF 59
            L L++  LT + +      +T L+   N              +  ++ ++   +     
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 60  VKSCNLTSLNLNGNRLEG-PLPPSLVNCHHLEVLNVGNNQIN--DNFPNWL-EILPELQV 115
                L  L L  NRL+       LV+C  L +LN+  N +   +     L E+LP +  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121

Query: 116 LI 117
           ++
Sbjct: 122 IL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 42  KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQIND 101
           +VL +   +    +     +   +T L+L+ NRL    PP+L     LEVL   +N + +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN 57

Query: 102 NFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGV 152
                       Q L+L +NR          +V  P L +++L  N     
Sbjct: 58  VDGVANLPRL--QELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 25/119 (21%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPS--SLRNLTEV----------- 255
            + L+       +   + +L L+  L++SHN L    P+  +LR L  +           
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 256 --------ESLDLSSNMLVG-HIPTQLTSLKYLSVLNLSYNQFEG-PIPRGSQFNTFPN 304
                   + L L +N L        L S   L +LNL  N        +       P+
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 26/225 (11%), Positives = 63/225 (28%), Gaps = 17/225 (7%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
           N   +    + +   +  +  +   +  L+     +       ++ L  L  L L+ N+ 
Sbjct: 20  NAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
                     +                  L           +   +++          + 
Sbjct: 76  T--------DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                ++         +  +  +     LS    Q      +  L+ L  L    N ++ 
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
             P  L +L  +  + L +N +    P  L +   L ++ L+ NQ
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 24/233 (10%), Positives = 56/233 (24%), Gaps = 9/233 (3%)

Query: 62  SCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN 121
            C+        +++   +P  L    +   L     ++            +L+ + +  N
Sbjct: 7   HCSNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISV------EVD 175
                I  +          I     N    +    + +         + +          
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 176 YMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLN 235
             +        +  I            +    + + L+ N  Q           L +   
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 236 ISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ 288
             +NNL           +    LD+S   +       L +LK L   +    +
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 49/291 (16%), Positives = 88/291 (30%), Gaps = 14/291 (4%)

Query: 6   IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMR---MNNFNGKIPRKFVKS 62
              L  L  S N LT +   P  ++  L  D+N    + D+              + +  
Sbjct: 57  PPHLESLVASCNSLTELPELP-QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 115

Query: 63  CNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR 122
              +S     +     L         LE +  GNNQ+ +                  S +
Sbjct: 116 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 175

Query: 123 FWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNS 182
               +  +   +   +  + +L   +    L T Y DN       +            N 
Sbjct: 176 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 235

Query: 183 SNYYESIILTIKGIDIKMERILTIFMTID--LSSNKFQGGIPEVVGKLNLLKGLNISHNN 240
                 +  ++  +D+       +          N     I  +      L+ LN+S+N 
Sbjct: 236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 295

Query: 241 LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEG 291
           L  ++P+    L   E L  S N L   +P    +LK L   ++ YN    
Sbjct: 296 LI-ELPALPPRL---ERLIASFNHL-AEVPELPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 41/115 (35%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV 60
                  +L  L++SNN L  +   PP                                 
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPALPP--------------------------------- 304

Query: 61  KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQV 115
               L  L  + N L   +P       +L+ L+V  N + + FP+  E + +L++
Sbjct: 305 ---RLERLIASFNHLAE-VPELP---QNLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 12/153 (7%)

Query: 1   MWDLGIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFV 60
                +  L  +   NN L  +   PP+       D+ LT      +   F       F 
Sbjct: 198 PELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 257

Query: 61  KSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
               L       N     +         LE LNV NN++ +  P      P L+ LI   
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASF 313

Query: 121 NRFWGPIGENTTIVPFP-SLRIIDLSHNEFTGV 152
           N           +   P +L+ + + +N     
Sbjct: 314 NHL-------AEVPELPQNLKQLHVEYNPLREF 339

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 3e-06
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 209 TIDLSSNKFQ-GGIPEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSN 263
           ++D+   +       E++  L   + + +    LT      I S+LR    +  L+L SN
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 264 MLVGHIPTQLTSL-----KYLSVLNLSYNQF 289
            L       +          +  L+L     
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 8e-06
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 42  KVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGPLPPSLV-----NCHHLEVL 92
           +VL +   + +      +    + + +L  L+L+ N L       LV         LE L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 93  NVGNNQINDNFPNWLEIL----PELQVL 116
            + +   ++   + L+ L    P L+V+
Sbjct: 432 VLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 231 LKGLNISHNNLT-GDIPSSLRNLTEVESLDLSSNML----VGHIPTQLTSLKYLSVLNLS 285
           ++ L+I    L+       L  L + + + L    L       I + L     L+ LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 286 YNQFEGPIPR 295
            N+       
Sbjct: 64  SNELGDVGVH 73

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 42  KVLDMRMNNFNGKIPRKFVKSC-NLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGN 96
           + LD++    +     + +        + L+   L       +  +L     L  LN+ +
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 97  NQINDNFPNWL-----EILPELQVLILRSNRFW 124
           N++ D   + +         ++Q L L++    
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 229 NLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGHIPTQLTS-----LKYL 279
           ++L+ L ++  +++      + ++L     +  LDLS+N L      QL          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 280 SVLNLSYNQFEGPIPR 295
             L L    +   +  
Sbjct: 429 EQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 209 TIDLSSNKFQG----GIPEVVGKLNLLKGLNISHNNLTGDIPSSL-----RNLTEVESLD 259
            + L+           +   +   + L+ L++S+N L       L     +    +E L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 260 LSSNMLVGHIPTQLTSLK 277
           L        +  +L +L+
Sbjct: 433 LYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 7e-04
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 63  CNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNFPNWL-EILPE----L 113
             L  L L    +       L  +L+  H L  L++ NN + D     L E + +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 114 QVLILRSNRFWGPIGENTTIVP--FPSLRII 142
           + L+L    +   + +    +    PSLR+I
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 23/91 (25%)

Query: 62  SCNLTSLNLNGNRL-EGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS 120
           S ++ SL++    L +      L      +V+ + +  + +      + +       LR 
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR---CKDISSA----LRV 53

Query: 121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151
           N               P+L  ++L  NE   
Sbjct: 54  N---------------PALAELNLRSNELGD 69

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 7/74 (9%)

Query: 85  NCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRSNRFWGPIGE---NTTIVPFP 137
               L VL + +  ++D+        L     L+ L L +N            +   P  
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 138 SLRIIDLSHNEFTG 151
            L  + L    ++ 
Sbjct: 427 LLEQLVLYDIYWSE 440

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 54  KIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPEL 113
           ++     K  + +   L+   L     P LV  +   VLN  ++          E +PEL
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPEL 67

Query: 114 QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT---GVLLTGYLDNFKAMMHGNNI 170
             L L +NR +     ++ +   P+L+I++LS NE      +     L   +  + GN++
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 171 SVEVDYMTPLNSSNYYESII 190
           S      T  + S Y  +I 
Sbjct: 128 S-----DTFRDQSTYISAIR 142

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGH 268
            +DL   +        +   N+   LN   +++   +     N+ E+ SL+LS+N L   
Sbjct: 26  ALDLKGLRS----DPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRLYRL 80

Query: 269 --IPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDE 326
             + + +     L +LNLS N+ +              + ++  + L      +S  I  
Sbjct: 81  DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 8e-05
 Identities = 28/190 (14%), Positives = 57/190 (30%), Gaps = 28/190 (14%)

Query: 92  LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTG 151
            N+    + D        L  +  +I  ++      G    I   P++  + L+ N+ T 
Sbjct: 29  DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTD 82

Query: 152 VLLTGYLDNFKAMMHG-------------------NNISVEVDYMTPLNSSNYYESIILT 192
           +     L N   +                      +     +  +  L      ES+ L 
Sbjct: 83  IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG 142

Query: 193 IKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNL 252
              I           +      +     I   +  L  L+ L +S N+++     +L  L
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LRALAGL 199

Query: 253 TEVESLDLSS 262
             ++ L+L S
Sbjct: 200 KNLDVLELFS 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 231 LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFE 290
            + L++    +   I +    L + +++D S N +          L+ L  L ++ N+  
Sbjct: 20  DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRIC 76

Query: 291 GPIPRGSQFNTFPNDSYVGNSGLCGFPLLESC 322
                  Q      +  + N+ L     L+  
Sbjct: 77  RIGEGLDQALPDLTELILTNNSLVELGDLDPL 108

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 15/109 (13%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 58  KFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLI 117
           ++  +     L+L G ++   +          + ++  +N+I     +   +L  L+ L+
Sbjct: 13  QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLL 69

Query: 118 LRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH 166
           + +NR           +P      + L++N    +     L + K++ +
Sbjct: 70  VNNNRICRIGEGLDQALPDL--TELILTNNSLVELGDLDPLASLKSLTY 116

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 5/122 (4%)

Query: 231 LKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNML----VGHIPTQLTSLKYLSVLNLSY 286
           LK   I+  +    + + L     V+ + LS N +       +   + S K L +   S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 287 NQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESCNIDEAPEPVGSTRFDEEEDASSWF 346
                      +       + +    L    L ++     A EP+             + 
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 347 DW 348
             
Sbjct: 129 HN 130

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 6/69 (8%)

Query: 67  SLNLNGNRLEG--PLPPSLVNCHHLEVLNVGNNQINDN----FPNWLEILPELQVLILRS 120
           SL L+    E    +   L+    ++ + +  N I           +    +L++     
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 121 NRFWGPIGE 129
                   E
Sbjct: 69  IFTGRVKDE 77

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 14/195 (7%)

Query: 64  NLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF 123
                 L    +   +  +  +   +  L      I     + +E L  L  +   +N+ 
Sbjct: 19  EKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQL 74

Query: 124 WGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSS 183
                      P  +L  +         +     L N   +      + ++  + PL + 
Sbjct: 75  TDIT-------PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 127

Query: 184 NYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG 243
                + L+   I           +     S+     +   +  L  L+ L+IS N ++ 
Sbjct: 128 TNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD 186

Query: 244 DIPSSLRNLTEVESL 258
              S L  LT +ESL
Sbjct: 187 --ISVLAKLTNLESL 199

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 209 TIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPS-SLRNLTEVESLDLSSNMLVG 267
            +  + +         +     L  L I +      +    LR L E+ +L +  + L  
Sbjct: 12  GLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 268 HIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLL 319
             P        LS LNLS+N  E    +  Q  +       GN   C   L 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 44/177 (24%)

Query: 12  LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRM----------------------- 48
           +D +   L  I    P + T+L  + N   ++    +                       
Sbjct: 13  VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 49  ---------------NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLN 93
                          N       + F+    L +LNL  N++   +P S  + + L  LN
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 94  VGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFT 150
           + +N  N N          L+   L                    ++I DL H+EF 
Sbjct: 133 LASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPS-----KVRDVQIKDLPHSEFK 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.05
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.8

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.6e-34  Score=259.74  Aligned_cols=258  Identities=29%  Similarity=0.444  Sum_probs=180.3

Q ss_pred             CccEEECCCCCCCCc--CCCCCCCCCeEeCCCCCCCCEEECcC-CcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663            8 TLYYLDLSNNFLTNI--EYFPPTNMTQLNFDSNLTHKVLDMRM-NNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~--~~~~~~~L~~L~l~~n~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   84 (403)
                      +++.|||+++.+++.  +|..+.+|+.|        ++|+|++ |.++|.+|..|+++++|++|++++|++.+..+..+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L--------~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~  122 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYL--------NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTC--------SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccc--------cccccccccccccccccccccccccchhhhcccccccccccccc
Confidence            355555555555553  23333444333        5555554 455555555555555566666655555555555555


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCc-cEEEccCCccccccchhhhhhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSL-RIIDLSHNEFTGVLLTGYLDNFKA  163 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~  163 (403)
                      .+.+|+.+++++|.+.+.+|..+..++.|+.+++++|.+.+.+|..+  ..+..+ +.+++++|++++..+..       
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~-------  193 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPT-------  193 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGG-------
T ss_pred             chhhhcccccccccccccCchhhccCcccceeecccccccccccccc--cccccccccccccccccccccccc-------
Confidence            55555566655555555555555555555555555555555555443  444443 55555555555443322       


Q ss_pred             hcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCC
Q 015663          164 MMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTG  243 (403)
Q Consensus       164 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  243 (403)
                                                           ...+ ....++++.+...+.+|..+..+++++.+++++|.+.+
T Consensus       194 -------------------------------------~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         194 -------------------------------------FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             -------------------------------------GGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             -------------------------------------cccc-cccccccccccccccccccccccccccccccccccccc
Confidence                                                 1112 34569999999999999999999999999999999986


Q ss_pred             CcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC
Q 015663          244 DIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRGSQFNTFPNDSYVGNSGLCGFPLLESC  322 (403)
Q Consensus       244 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~~~~~~~gn~~lc~~~~~~~C  322 (403)
                      .+| .++.+++|+.|+|++|++++.+|..+.++++|++|+|++|+++|.+|+...+..+....+.||+.+||.|.. .|
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            655 688899999999999999999999999999999999999999999998877888988999999999998864 55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=3.6e-29  Score=227.63  Aligned_cols=233  Identities=27%  Similarity=0.374  Sum_probs=203.9

Q ss_pred             CCCCccEEECCC-CCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccc
Q 015663            5 GIATLYYLDLSN-NFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSL   83 (403)
Q Consensus         5 ~~~~L~~L~Ls~-n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~   83 (403)
                      ++++|++|+|++ |.++|.+|..+.+|+.|        ++|++++|.+.+..+..+..+..|+.+++++|.+.+.+|..+
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L--------~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l  145 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQL--------HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTC--------SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             cCcccccccccccccccccccccccccccc--------chhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence            678999999997 89998888777777766        999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEEccCCcCCcCCChhccCCCCC-cEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhh
Q 015663           84 VNCHHLEVLNVGNNQINDNFPNWLEILPEL-QVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFK  162 (403)
Q Consensus        84 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  162 (403)
                      .++++++.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+  ..+. ...++++.+...+..+...     
T Consensus       146 ~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~--~~l~-~~~l~l~~~~~~~~~~~~~-----  217 (313)
T d1ogqa_         146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLN-LAFVDLSRNMLEGDASVLF-----  217 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--GGCC-CSEEECCSSEEEECCGGGC-----
T ss_pred             ccCcccceeeccccccccccccccccccccccccccccccccccccccc--cccc-ccccccccccccccccccc-----
Confidence            999999999999999999999999988876 899999999998887755  5554 4579999988887665431     


Q ss_pred             hhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCC
Q 015663          163 AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLT  242 (403)
Q Consensus       163 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  242 (403)
                                                             ..++.++.+++++|.+++.+| .++.+++|+.|+|++|+++
T Consensus       218 ---------------------------------------~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~  257 (313)
T d1ogqa_         218 ---------------------------------------GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             ---------------------------------------CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCE
T ss_pred             ---------------------------------------ccccccccccccccccccccc-ccccccccccccCccCeec
Confidence                                                   126788999999999997665 5888999999999999999


Q ss_pred             CCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCc-CccC-CC
Q 015663          243 GDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQ-FEGP-IP  294 (403)
Q Consensus       243 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~-ip  294 (403)
                      |.+|..++++++|++|+|++|+++|.+|. +.++++|+.+++++|+ +.|. +|
T Consensus       258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             ccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            99999999999999999999999999985 5788999999999997 5653 44

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=3.1e-25  Score=200.63  Aligned_cols=247  Identities=21%  Similarity=0.254  Sum_probs=151.7

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L   89 (403)
                      +.+|=++++++.+|+.-.++           +++|++++|.|+...+.+|.++++|++|++++|.++...|..|.++++|
T Consensus        13 ~~~~C~~~~L~~lP~~l~~~-----------l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L   81 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLPPD-----------TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL   81 (305)
T ss_dssp             TEEECTTSCCCSCCCSCCTT-----------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CEEEecCCCCCccCCCCCCC-----------CCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCcc
Confidence            44555555566554322222           2555666666654334456666666666666666665455556666666


Q ss_pred             CEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCcccccc-chhhhhhhhhhcccC
Q 015663           90 EVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVL-LTGYLDNFKAMMHGN  168 (403)
Q Consensus        90 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~~~  168 (403)
                      ++|++++|+++. +|..+  ...++.|++.+|.+.+..+..  +.....+..++...|...... ....+..++.|+.+.
T Consensus        82 ~~L~l~~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~--~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~  156 (305)
T d1xkua_          82 ERLYLSKNQLKE-LPEKM--PKTLQELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  156 (305)
T ss_dssp             CEEECCSSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             CEecccCCccCc-Cccch--hhhhhhhhccccchhhhhhhh--hhccccccccccccccccccCCCccccccccccCccc
Confidence            666666666655 33222  245566666666554322221  133444555555554332211 111122333332222


Q ss_pred             CCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCcc
Q 015663          169 NISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSS  248 (403)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~  248 (403)
                      ........+.                      ...+++|+.|++++|..++..+..+..++.++.|++++|.+++..+..
T Consensus       157 l~~n~l~~l~----------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~  214 (305)
T d1xkua_         157 IADTNITTIP----------------------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS  214 (305)
T ss_dssp             CCSSCCCSCC----------------------SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccCCccccC----------------------cccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc
Confidence            2111110000                      011578899999999999888999999999999999999999777888


Q ss_pred             ccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663          249 LRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG  296 (403)
Q Consensus       249 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~  296 (403)
                      +.++++|++|+|++|+++ .+|..+..+++|++|++++|+|+ .++..
T Consensus       215 ~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~  260 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSN  260 (305)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTT
T ss_pred             ccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccChh
Confidence            899999999999999998 56888999999999999999998 55543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.4e-25  Score=195.63  Aligned_cols=225  Identities=20%  Similarity=0.140  Sum_probs=183.3

Q ss_pred             EEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCC
Q 015663           11 YLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLE   90 (403)
Q Consensus        11 ~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~   90 (403)
                      .++.++++++.++..-.           +.+++|+|++|+|+...+.+|.++++|++|++++|++....+..+.+++.++
T Consensus        15 ~v~c~~~~L~~iP~~ip-----------~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~   83 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP-----------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE   83 (284)
T ss_dssp             EEECCSSCCSSCCTTCC-----------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             EEEcCCCCCCccCCCCC-----------CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccc
Confidence            45677777776643222           2347788999999866667899999999999999999987788888888999


Q ss_pred             EEEcc-CCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCC
Q 015663           91 VLNVG-NNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN  169 (403)
Q Consensus        91 ~L~l~-~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~  169 (403)
                      .++.. .+.++...|..|..+++|++|++++|.+....+..+  ...++|+.+++++|.+++..+..             
T Consensus        84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~~i~~~~-------------  148 (284)
T d1ozna_          84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDDT-------------  148 (284)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTT-------------
T ss_pred             ccccccccccccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhccccccccChhH-------------
Confidence            88765 566777778888999999999999998865555544  67888999999999988654432             


Q ss_pred             CcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccc
Q 015663          170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSL  249 (403)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  249 (403)
                                                     +...+.|+.|++++|++++..+..|.++++|+.+++++|++++..|..|
T Consensus       149 -------------------------------f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f  197 (284)
T d1ozna_         149 -------------------------------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF  197 (284)
T ss_dssp             -------------------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             -------------------------------hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHh
Confidence                                           1125678899999999998888888999999999999999998888999


Q ss_pred             cCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccC
Q 015663          250 RNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGP  292 (403)
Q Consensus       250 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  292 (403)
                      .++++|+.||+++|++.+..+..|..+++|++|++++|++.+.
T Consensus       198 ~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            9999999999999999988888899999999999999998854

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.9e-25  Score=198.71  Aligned_cols=235  Identities=19%  Similarity=0.183  Sum_probs=195.0

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEcc-CCcCcCCCCccccC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLN-GNRLEGPLPPSLVN   85 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~   85 (403)
                      +++++|+|++|.|+.+++..+.+++.|        ++|++++|.+....+..+..+..++.+... .+.++...+..|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L--------~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  103 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNL--------TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTC--------CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccc--------cccccccccccccccccccccccccccccccccccccccchhhcc
Confidence            368999999999999888778888766        999999999998888889999999998865 66777667888999


Q ss_pred             CCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhc
Q 015663           86 CHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMM  165 (403)
Q Consensus        86 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  165 (403)
                      +++|++|++++|.+....+..+..+++|+.+++++|.+++..+..+  ..+++|++|++++|.+++..+..+        
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f--~~~~~L~~L~l~~N~l~~l~~~~f--------  173 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISSVPERAF--------  173 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCEECTTTT--------
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHh--ccccchhhcccccCcccccchhhh--------
Confidence            9999999999999988777888889999999999999976555555  788999999999999986654332        


Q ss_pred             ccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCc
Q 015663          166 HGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDI  245 (403)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  245 (403)
                                                          ..+++|+.+++++|.+++..|..|..+++|++|++++|.+.+..
T Consensus       174 ------------------------------------~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         174 ------------------------------------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             ------------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ------------------------------------ccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence                                                22788999999999999999999999999999999999999888


Q ss_pred             CccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCcCCcCccCCCCC
Q 015663          246 PSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLSYNQFEGPIPRG  296 (403)
Q Consensus       246 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~  296 (403)
                      +..|+.+++|+.|++++|++...-+.. .-...++.+....+++.+..|..
T Consensus       218 ~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchH
Confidence            889999999999999999988543211 11122444555566666655554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4e-24  Score=189.20  Aligned_cols=198  Identities=24%  Similarity=0.260  Sum_probs=144.4

Q ss_pred             CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      +..+|.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|+|+. +| .++.+++|++|++++
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCS
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccccccc
Confidence            355677777777 4665553  367777787777775555667777778888888777775 33 346677788888888


Q ss_pred             ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhh
Q 015663          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM  200 (403)
Q Consensus       121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (403)
                      |++++. +..+  ..+++|+.|++++|.+.+..+..                                            
T Consensus        87 N~l~~~-~~~~--~~l~~L~~L~l~~~~~~~~~~~~--------------------------------------------  119 (266)
T d1p9ag_          87 NQLQSL-PLLG--QTLPALTVLDVSFNRLTSLPLGA--------------------------------------------  119 (266)
T ss_dssp             SCCSSC-CCCT--TTCTTCCEEECCSSCCCCCCSST--------------------------------------------
T ss_pred             cccccc-cccc--ccccccccccccccccceeeccc--------------------------------------------
Confidence            777543 3333  67777888888777766543322                                            


Q ss_pred             hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCC
Q 015663          201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS  280 (403)
Q Consensus       201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  280 (403)
                      +..+..++.|++++|.++...+..+..+++++.+++++|++++..+..+..+++|++|+|++|+|+ .+|..+..+++|+
T Consensus       120 ~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~  198 (266)
T d1p9ag_         120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP  198 (266)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCS
T ss_pred             cccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCC
Confidence            112566778888888888777777778888888999998888777777888888999999999888 6777777888888


Q ss_pred             EEeCcCCcCcc
Q 015663          281 VLNLSYNQFEG  291 (403)
Q Consensus       281 ~L~L~~N~l~~  291 (403)
                      .|+|++|++.+
T Consensus       199 ~L~L~~Np~~C  209 (266)
T d1p9ag_         199 FAFLHGNPWLC  209 (266)
T ss_dssp             EEECCSCCBCC
T ss_pred             EEEecCCCCCC
Confidence            88888887763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.2e-23  Score=196.16  Aligned_cols=84  Identities=23%  Similarity=0.351  Sum_probs=51.4

Q ss_pred             cccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEe
Q 015663          204 LTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLN  283 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  283 (403)
                      ++.++.++++.|.+++ + ..+..+++++.|++++|++++..  .+..+++|+.|++++|++++ ++ .+..+++|++|+
T Consensus       284 ~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~  357 (384)
T d2omza2         284 LTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLS  357 (384)
T ss_dssp             CTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEE
T ss_pred             cccccccccccccccc-c-cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEE
Confidence            5556666666666653 2 23556666677777777666432  25666677777777776663 33 466666777777


Q ss_pred             CcCCcCccCC
Q 015663          284 LSYNQFEGPI  293 (403)
Q Consensus       284 L~~N~l~~~i  293 (403)
                      +++|++++..
T Consensus       358 l~~N~l~~l~  367 (384)
T d2omza2         358 AGHNQISDLT  367 (384)
T ss_dssp             CCSSCCCBCG
T ss_pred             CCCCcCCCCh
Confidence            7777666443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-23  Score=184.14  Aligned_cols=202  Identities=20%  Similarity=0.148  Sum_probs=170.8

Q ss_pred             CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   84 (403)
                      ....+.++|.++++++.+++.-.+           .+++|+|++|.|++..+.+|.++++|++|+|++|+++ .+| .++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp~-----------~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~   74 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLPK-----------DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDG   74 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCCT-----------TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCS
T ss_pred             ccCCCeEEEccCCCCCeeCcCcCc-----------CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccc
Confidence            345667789999999987543222           3478899999999777788999999999999999999 454 468


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  164 (403)
                      .+++|++|++++|+++. .+..+..+++|+.|++++|.+.+..+..+  ..+.++++|++++|.++...+..        
T Consensus        75 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~l~~L~l~~n~l~~l~~~~--------  143 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELKTLPPGL--------  143 (266)
T ss_dssp             CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCCCCCTTT--------
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccceeecccc--ccccccccccccccccceecccc--------
Confidence            89999999999999987 57788999999999999999876655554  78899999999999998654432        


Q ss_pred             cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD  244 (403)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  244 (403)
                                                          +..++.++.+++++|++++..+..|..+++|++|+|++|+|+ .
T Consensus       144 ------------------------------------~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~  186 (266)
T d1p9ag_         144 ------------------------------------LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T  186 (266)
T ss_dssp             ------------------------------------TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred             ------------------------------------ccccccchhcccccccccccCccccccccccceeecccCCCc-c
Confidence                                                122678999999999999888888999999999999999999 8


Q ss_pred             cCccccCCCCCCEEeccCCcCCC
Q 015663          245 IPSSLRNLTEVESLDLSSNMLVG  267 (403)
Q Consensus       245 ~p~~~~~l~~L~~L~Ls~n~l~~  267 (403)
                      +|..+..+++|+.|+|++|.+..
T Consensus       187 lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         187 IPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cChhHCCCCCCCEEEecCCCCCC
Confidence            88888899999999999998763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=4.2e-22  Score=185.45  Aligned_cols=80  Identities=25%  Similarity=0.305  Sum_probs=49.0

Q ss_pred             hhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCE
Q 015663          202 RILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSV  281 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  281 (403)
                      ..++.++.|++++|++++..  .+..+++|++|++++|++++ ++ .++++++|+.|++++|++++..|  +.++++|+.
T Consensus       304 ~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~  377 (384)
T d2omza2         304 SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  377 (384)
T ss_dssp             GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred             chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence            34566666666666666432  25566666666666666652 33 46666666666666666664433  566666666


Q ss_pred             EeCcCC
Q 015663          282 LNLSYN  287 (403)
Q Consensus       282 L~L~~N  287 (403)
                      |++++|
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             eeCCCC
Confidence            666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.9e-21  Score=174.18  Aligned_cols=254  Identities=22%  Similarity=0.226  Sum_probs=198.4

Q ss_pred             CCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCC
Q 015663            7 ATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNC   86 (403)
Q Consensus         7 ~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l   86 (403)
                      +++++|+|++|.|+.+++..+.++..|        ++|++++|.+....|..|.++++|++|++++|+++ .+|..+  .
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L--------~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~   99 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNL--------HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--P   99 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTC--------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--C
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccc--------cccccccccccccchhhhhCCCccCEecccCCccC-cCccch--h
Confidence            679999999999999988778777766        99999999999878889999999999999999999 566543  4


Q ss_pred             CCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcc
Q 015663           87 HHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMH  166 (403)
Q Consensus        87 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  166 (403)
                      ..++.|++.+|.+.+..+..+.....+..++...|...........+..+++|+.+++++|.++... .....+++.|..
T Consensus       100 ~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~~~~~~L~~L~l  178 (305)
T d1xkua_         100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QGLPPSLTELHL  178 (305)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SSCCTTCSEEEC
T ss_pred             hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC-cccCCccCEEEC
Confidence            6899999999999987667777888888998888765433333334577889999999999887543 333334333322


Q ss_pred             cCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC
Q 015663          167 GNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP  246 (403)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  246 (403)
                      ..+   .                   ........+..++.++.|++++|.+++..+..+.++++|++|+|++|+++ .+|
T Consensus       179 ~~n---~-------------------~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp  235 (305)
T d1xkua_         179 DGN---K-------------------ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP  235 (305)
T ss_dssp             TTS---C-------------------CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred             CCC---c-------------------CCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccc
Confidence            111   0                   01112233445788999999999999888999999999999999999998 678


Q ss_pred             ccccCCCCCCEEeccCCcCCCCCCcc------ccCCCCCCEEeCcCCcCc-cCCCC
Q 015663          247 SSLRNLTEVESLDLSSNMLVGHIPTQ------LTSLKYLSVLNLSYNQFE-GPIPR  295 (403)
Q Consensus       247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~------~~~l~~L~~L~L~~N~l~-~~ip~  295 (403)
                      ..+..+++|++|+|++|+|+......      .....+|+.|++++|.++ ..+++
T Consensus       236 ~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            89999999999999999998653333      345788999999999985 34444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.1e-18  Score=150.17  Aligned_cols=185  Identities=18%  Similarity=0.236  Sum_probs=134.8

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  119 (403)
                      +|+.|++++|.++ .++ .+..+++|++|++++|++++ ++ .+..+++|+.+++++|.++. + ..+..+++|+.++++
T Consensus        42 ~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~-~~-~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LA-PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeec-cc-cccccccccccccccccccc-c-ccccccccccccccc
Confidence            3477777777777 343 57778888888888888874 32 37788888888888887775 3 346778888888888


Q ss_pred             cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015663          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK  199 (403)
Q Consensus       120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (403)
                      ++...+..+    +...+.++.+.++++.+....+                                             
T Consensus       116 ~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~---------------------------------------------  146 (227)
T d1h6ua2         116 STQITDVTP----LAGLSNLQVLYLDLNQITNISP---------------------------------------------  146 (227)
T ss_dssp             TSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG---------------------------------------------
T ss_pred             cccccccch----hccccchhhhhchhhhhchhhh---------------------------------------------
Confidence            776643322    2456677777777776653321                                             


Q ss_pred             hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCC
Q 015663          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYL  279 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  279 (403)
                       ....++|+.|++++|.+++..  .+.++++|++|++++|++++ ++. ++++++|+.|++++|++++. + .+.++++|
T Consensus       147 -~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L  219 (227)
T d1h6ua2         147 -LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-S-PLANTSNL  219 (227)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-G-GGTTCTTC
T ss_pred             -hccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCC-c-ccccCCCC
Confidence             112677899999999887432  37889999999999999984 443 78899999999999999854 4 37889999


Q ss_pred             CEEeCcC
Q 015663          280 SVLNLSY  286 (403)
Q Consensus       280 ~~L~L~~  286 (403)
                      +.|++++
T Consensus       220 ~~L~lsn  226 (227)
T d1h6ua2         220 FIVTLTN  226 (227)
T ss_dssp             CEEEEEE
T ss_pred             CEEEeeC
Confidence            9999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.9e-19  Score=153.34  Aligned_cols=220  Identities=15%  Similarity=0.067  Sum_probs=129.7

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCC-CccccCCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPL-PPSLVNCHH   88 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~   88 (403)
                      +.++.++..++.+++.-.++           +++||+++|.++...+.+|.++++|++|++++|.+...+ +..|.++++
T Consensus        11 ~~i~c~~~~l~~iP~~l~~~-----------l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPRN-----------AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCSC-----------CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             CEEEEeCCCCCCcCCCCCCC-----------CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccc
Confidence            45566666666544322222           256667777776444456677777777777777665433 335666777


Q ss_pred             CCEEEccC-CcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhccc
Q 015663           89 LEVLNVGN-NQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHG  167 (403)
Q Consensus        89 L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~  167 (403)
                      ++++++.. |.+....+..|..+++|+++++++|.+....+ ...+..+..+..+..+++.+.......+          
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~-~~~~~~l~~l~~~~~~n~~l~~i~~~~~----------  148 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSF----------  148 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC-CTTTCBSSCEEEEEESCTTCCEECTTSS----------
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccc-cccccccccccccccccccccccccccc----------
Confidence            77776653 55666566666777777777777776643222 1112334445555555555443322111          


Q ss_pred             CCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEE-EecCCCCCCCcC
Q 015663          168 NNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGL-NISHNNLTGDIP  246 (403)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L-~L~~n~l~~~~p  246 (403)
                                                       ......++.|++++|+++...+.. ....+++++ .+++|+++...+
T Consensus       149 ---------------------------------~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~  194 (242)
T d1xwdc1         149 ---------------------------------VGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPN  194 (242)
T ss_dssp             ---------------------------------TTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCT
T ss_pred             ---------------------------------ccccccceeeeccccccccccccc-ccchhhhccccccccccccccH
Confidence                                             011346778888888888544443 344555544 567777874445


Q ss_pred             ccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeCc
Q 015663          247 SSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNLS  285 (403)
Q Consensus       247 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  285 (403)
                      ..|.++++|++|++++|+++...+..|.+++.|+.+++.
T Consensus       195 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             HHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            567888888888888888885555566666666655543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=8e-17  Score=147.24  Aligned_cols=260  Identities=22%  Similarity=0.251  Sum_probs=132.8

Q ss_pred             CccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCC
Q 015663            8 TLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGP   78 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~   78 (403)
                      ++++|||+++.++.++ ...++|+.|++++|         .+|+.|++++|.++ .+++.   .+.|++|++++|.++ .
T Consensus        39 ~l~~LdLs~~~L~~lp-~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~  112 (353)
T d1jl5a_          39 QAHELELNNLGLSSLP-ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-K  112 (353)
T ss_dssp             TCSEEECTTSCCSCCC-SCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-S
T ss_pred             CCCEEEeCCCCCCCCC-CCCCCCCEEECCCCCCcccccchhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-c
Confidence            5789999999998754 45677877777776         46777777777776 33321   135777777777777 4


Q ss_pred             CCccccCCCCCCEEEccCCcCCcCCC------------------hhccCCCCCcEEEcccccccCcCCCC----------
Q 015663           79 LPPSLVNCHHLEVLNVGNNQINDNFP------------------NWLEILPELQVLILRSNRFWGPIGEN----------  130 (403)
Q Consensus        79 ~p~~~~~l~~L~~L~l~~n~l~~~~p------------------~~~~~l~~L~~L~l~~n~l~~~~~~~----------  130 (403)
                      +|. ++.+++|++|+++++.+....+                  ..+..++.++.+.+++|.........          
T Consensus       113 lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~  191 (353)
T d1jl5a_         113 LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN  191 (353)
T ss_dssp             CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred             ccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccc
Confidence            553 5667777777777776654211                  11223344444444444332110000          


Q ss_pred             ------CCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc
Q 015663          131 ------TTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL  204 (403)
Q Consensus       131 ------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (403)
                            .....++.|+.+++++|.......  ...++..+.....   ........  .............. .......
T Consensus       192 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~l~~~~~~~~---~~~~~~~~--~~~l~~~~~~~~~~-~~l~~l~  263 (353)
T d1jl5a_         192 NILEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDN---YLTDLPEL--PQSLTFLDVSENIF-SGLSELP  263 (353)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSS---CCSCCCCC--CTTCCEEECCSSCC-SEESCCC
T ss_pred             cccccccccccccccccccccccccccccc--ccccccccccccc---cccccccc--cccccccccccccc-ccccccc
Confidence                  001223444444444443332110  0111111110000   00000000  00000000000000 0000001


Q ss_pred             ccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeC
Q 015663          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL  284 (403)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  284 (403)
                      ......++..+.+.    .....+++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +.+|++|++
T Consensus       264 ~~~~~~~~~~~~~~----~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L  331 (353)
T d1jl5a_         264 PNLYYLNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHV  331 (353)
T ss_dssp             TTCCEEECCSSCCS----EECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred             chhcccccccCccc----cccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEEC
Confidence            22334444444443    22234678899999999888 56643   578889999999888 56643   457889999


Q ss_pred             cCCcCccCCCC
Q 015663          285 SYNQFEGPIPR  295 (403)
Q Consensus       285 ~~N~l~~~ip~  295 (403)
                      ++|+++ .+|.
T Consensus       332 ~~N~L~-~lp~  341 (353)
T d1jl5a_         332 EYNPLR-EFPD  341 (353)
T ss_dssp             CSSCCS-SCCC
T ss_pred             cCCcCC-CCCc
Confidence            999887 5665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.8e-18  Score=148.98  Aligned_cols=213  Identities=14%  Similarity=0.110  Sum_probs=159.1

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCC-ChhccCCCCCcEEEccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNF-PNWLEILPELQVLILRS  120 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~  120 (403)
                      +.++.++.+++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+...+ +.+|..++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            67889998888 7776653  48999999999999655567999999999999999987644 46788999999998765


Q ss_pred             -ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015663          121 -NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK  199 (403)
Q Consensus       121 -n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (403)
                       |.+....+..+  .++++|+++++++|.+....+.....                                        
T Consensus        88 ~n~l~~~~~~~~--~~l~~L~~l~l~~~~l~~~~~~~~~~----------------------------------------  125 (242)
T d1xwdc1          88 ANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVHKIH----------------------------------------  125 (242)
T ss_dssp             CTTCCEECTTSE--ECCTTCCEEEEESCCCCSCCCCTTTC----------------------------------------
T ss_pred             cccccccccccc--cccccccccccchhhhcccccccccc----------------------------------------
Confidence             56655555544  88999999999999887543322111                                        


Q ss_pred             hhhhcccceEEEcccCcccccCCcccCCCC-CCCEEEecCCCCCCCcCccccCCCCCCEE-eccCCcCCCCCCccccCCC
Q 015663          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLN-LLKGLNISHNNLTGDIPSSLRNLTEVESL-DLSSNMLVGHIPTQLTSLK  277 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L-~Ls~n~l~~~~p~~~~~l~  277 (403)
                         .+..+..+..+++.+....+..+..++ .++.|++++|+++. ++.......+++.+ ++++|+++...+..|.+++
T Consensus       126 ---~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~  201 (242)
T d1xwdc1         126 ---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS  201 (242)
T ss_dssp             ---BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSC
T ss_pred             ---cccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCC
Confidence               134556666677777766666666654 78899999999984 44444455665554 6788899866667789999


Q ss_pred             CCCEEeCcCCcCccCCCCCCCCCCCCCC
Q 015663          278 YLSVLNLSYNQFEGPIPRGSQFNTFPND  305 (403)
Q Consensus       278 ~L~~L~L~~N~l~~~ip~~~~~~~~~~~  305 (403)
                      +|++|++++|.++ .+|.. .+..+..+
T Consensus       202 ~L~~L~Ls~N~l~-~l~~~-~~~~l~~L  227 (242)
T d1xwdc1         202 GPVILDISRTRIH-SLPSY-GLENLKKL  227 (242)
T ss_dssp             CCSEEECTTSCCC-CCCSS-SCTTCCEE
T ss_pred             CCCEEECCCCcCC-ccCHH-HHcCCccc
Confidence            9999999999998 66654 24444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.8e-18  Score=145.47  Aligned_cols=180  Identities=21%  Similarity=0.309  Sum_probs=114.5

Q ss_pred             ECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc
Q 015663           45 DMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW  124 (403)
Q Consensus        45 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  124 (403)
                      ++..+.+++.++.  ..+.+|++|++++|.++. ++ .+..+++|++|++++|++++. + .++.+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccCc-c-ccccCcccccccccccccc
Confidence            3444444433332  234566777777777763 33 356677777777777777663 2 2566777777777777764


Q ss_pred             CcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc
Q 015663          125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL  204 (403)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (403)
                      + ++.   +..+++|+.|++++|.+.....                                              ...+
T Consensus       104 ~-l~~---l~~l~~L~~L~l~~~~~~~~~~----------------------------------------------l~~l  133 (210)
T d1h6ta2         104 D-LSS---LKDLKKLKSLSLEHNGISDING----------------------------------------------LVHL  133 (210)
T ss_dssp             C-GGG---GTTCTTCCEEECTTSCCCCCGG----------------------------------------------GGGC
T ss_pred             c-ccc---cccccccccccccccccccccc----------------------------------------------cccc
Confidence            3 221   2566777777777776543211                                              0114


Q ss_pred             ccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeC
Q 015663          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL  284 (403)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  284 (403)
                      +.++.+++++|.+++  +..+..+++|+.+++++|++++ ++ .+.++++|+.|++++|+++ .+| .+.++++|++|+|
T Consensus       134 ~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEE
T ss_pred             ccccccccccccccc--cccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEc
Confidence            567777777777763  2345667888888888888874 33 2778888888888888887 344 4788888888887


Q ss_pred             cC
Q 015663          285 SY  286 (403)
Q Consensus       285 ~~  286 (403)
                      ++
T Consensus       208 s~  209 (210)
T d1h6ta2         208 FS  209 (210)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=4.6e-18  Score=146.11  Aligned_cols=188  Identities=20%  Similarity=0.277  Sum_probs=148.5

Q ss_pred             CCCCccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCcccc
Q 015663            5 GIATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLV   84 (403)
Q Consensus         5 ~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~   84 (403)
                      ++++|+.|++++|.|+...  .+.++        ++|++|++++|.+++..  .+..+++|+++++++|.++ .++ .+.
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~l~~l--------~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~  104 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE--GVQYL--------NNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIA  104 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGC--------TTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGT
T ss_pred             HcCCcCEEECCCCCCCcch--hHhcC--------CCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-ccc
Confidence            3567888888888887652  12333        45589999999998544  3889999999999999988 454 588


Q ss_pred             CCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhh
Q 015663           85 NCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAM  164 (403)
Q Consensus        85 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  164 (403)
                      ++++|+.++++++...+.  ..+...+.++.+.++++.+....+    +...++|++|++++|.+.+..+   +      
T Consensus       105 ~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~~~~~---l------  169 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP---L------  169 (227)
T ss_dssp             TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---G------
T ss_pred             cccccccccccccccccc--chhccccchhhhhchhhhhchhhh----hccccccccccccccccccchh---h------
Confidence            999999999999988764  346778899999999988754332    3678899999999998874322   1      


Q ss_pred             cccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCC
Q 015663          165 MHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGD  244 (403)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  244 (403)
                                                           ..+++|+.|++++|++++ ++. ++.+++|++|+|++|++++ 
T Consensus       170 -------------------------------------~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-  209 (227)
T d1h6ua2         170 -------------------------------------ANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-  209 (227)
T ss_dssp             -------------------------------------TTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-
T ss_pred             -------------------------------------cccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-
Confidence                                                 126789999999999985 443 7899999999999999984 


Q ss_pred             cCccccCCCCCCEEeccC
Q 015663          245 IPSSLRNLTEVESLDLSS  262 (403)
Q Consensus       245 ~p~~~~~l~~L~~L~Ls~  262 (403)
                      ++ .++++++|+.|++++
T Consensus       210 i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         210 VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GGTTCTTCCEEEEEE
T ss_pred             Cc-ccccCCCCCEEEeeC
Confidence            44 388999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=8.1e-18  Score=142.63  Aligned_cols=163  Identities=27%  Similarity=0.385  Sum_probs=133.0

Q ss_pred             CCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcc
Q 015663           40 THKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILR  119 (403)
Q Consensus        40 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~  119 (403)
                      +|+.|++++|.++. ++ .+..+++|++|++++|++++ ++ .++++++|++|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            45888999999874 33 47889999999999999994 54 47899999999999999987 44 58889999999999


Q ss_pred             cccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchh
Q 015663          120 SNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIK  199 (403)
Q Consensus       120 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (403)
                      +|.+.. ++   .+..+++++.+++++|.+++....                                            
T Consensus       121 ~~~~~~-~~---~l~~l~~l~~l~~~~n~l~~~~~~--------------------------------------------  152 (210)
T d1h6ta2         121 HNGISD-IN---GLVHLPQLESLYLGNNKITDITVL--------------------------------------------  152 (210)
T ss_dssp             TSCCCC-CG---GGGGCTTCCEEECCSSCCCCCGGG--------------------------------------------
T ss_pred             cccccc-cc---cccccccccccccccccccccccc--------------------------------------------
Confidence            998743 22   237789999999999988754221                                            


Q ss_pred             hhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccC
Q 015663          200 MERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSS  262 (403)
Q Consensus       200 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  262 (403)
                        ..+++|+.+++++|++++ ++. +.++++|++|+|++|+++ .+| .+.++++|++|+|++
T Consensus       153 --~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         153 --SRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --GGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             --cccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence              126789999999999985 443 789999999999999998 455 589999999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=2.5e-18  Score=143.66  Aligned_cols=133  Identities=22%  Similarity=0.204  Sum_probs=112.3

Q ss_pred             ccEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccC-CccccCCCCcCEEEccCCcCcCCCCccccCCC
Q 015663            9 LYYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKI-PRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCH   87 (403)
Q Consensus         9 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~   87 (403)
                      .+.++.++++++.+++.-.+           .+++|+|++|.|++.+ +..|.++++|++|++++|++....+..|..++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp~-----------~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~   78 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIPL-----------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS   78 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT-----------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CCEEEEeCCCcCccCCCCCC-----------CCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc
Confidence            46789999999987653322           3377899999998644 66788999999999999999988888999999


Q ss_pred             CCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccc
Q 015663           88 HLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLL  154 (403)
Q Consensus        88 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  154 (403)
                      +|++|++++|+++.+.|.+|.++++|++|+|++|++++..+..+  ..+++|++|++++|.+.....
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGG
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccc
Confidence            99999999999999888889999999999999999987666655  889999999999998876543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.1e-17  Score=140.49  Aligned_cols=176  Identities=27%  Similarity=0.350  Sum_probs=105.5

Q ss_pred             ECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccccc
Q 015663           45 DMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFW  124 (403)
Q Consensus        45 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  124 (403)
                      .++.+.+++.++  ...+.++++|++++|.++ .++ .+..+++|++|++++|++++..|  +..+++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            344444443322  234556666777776666 332 35666777777777777666322  666677777777766653


Q ss_pred             CcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhc
Q 015663          125 GPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERIL  204 (403)
Q Consensus       125 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (403)
                      .. +   .+..++.|+.|+++++......+                                              ...+
T Consensus        98 ~~-~---~l~~l~~L~~L~l~~~~~~~~~~----------------------------------------------~~~l  127 (199)
T d2omxa2          98 DI-T---PLANLTNLTGLTLFNNQITDIDP----------------------------------------------LKNL  127 (199)
T ss_dssp             CC-G---GGTTCTTCSEEECCSSCCCCCGG----------------------------------------------GTTC
T ss_pred             cc-c---ccccccccccccccccccccccc----------------------------------------------cchh
Confidence            32 2   12566667777776666553211                                              0114


Q ss_pred             ccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEE
Q 015663          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVL  282 (403)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  282 (403)
                      ++|+.|++++|.++ .++ .+..+++|+.|++.+|++++ ++ .++++++|+.|++++|++++ ++ .+.++++|+.|
T Consensus       128 ~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            56677777777765 333 36677777778887777774 32 36777788888888887764 33 36667777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=4.2e-18  Score=142.31  Aligned_cols=78  Identities=19%  Similarity=0.283  Sum_probs=32.4

Q ss_pred             EEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcC-CChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEcc
Q 015663           67 SLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDN-FPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLS  145 (403)
Q Consensus        67 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  145 (403)
                      .++.++++++ .+|..+.  +++++|+|++|+|+.. .+..|..+++|+.|++++|.+.+..+..+  ..+++|++|+++
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~--~~~~~L~~L~Ls   86 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQELQLG   86 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEECC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc--ccccccceeeec
Confidence            4444444444 3443331  3444445555544432 22334444444444444444433333322  333333433333


Q ss_pred             CCcc
Q 015663          146 HNEF  149 (403)
Q Consensus       146 ~n~l  149 (403)
                      +|++
T Consensus        87 ~N~l   90 (192)
T d1w8aa_          87 ENKI   90 (192)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            3333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=3.1e-16  Score=143.30  Aligned_cols=251  Identities=20%  Similarity=0.204  Sum_probs=165.9

Q ss_pred             CCCccEEECCCCCCCCcCCCCCCCCCeEeCCCC---------CCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCc
Q 015663            6 IATLYYLDLSNNFLTNIEYFPPTNMTQLNFDSN---------LTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLE   76 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n---------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~   76 (403)
                      .++|++|++++|+|+.+ |..+.+|+.|++++|         +.|++|++++|.+. .+|. ++.+++|+.|+++++.+.
T Consensus        57 ~~~L~~L~Ls~N~l~~l-p~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          57 PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CTTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCCCccc-ccchhhhhhhhhhhcccchhhhhccccccccccccccc-cccc-hhhhccceeecccccccc
Confidence            47899999999999966 566789999999999         57999999999998 5664 678999999999999877


Q ss_pred             CCC------------------CccccCCCCCCEEEccCCcCCcCC------------------ChhccCCCCCcEEEccc
Q 015663           77 GPL------------------PPSLVNCHHLEVLNVGNNQINDNF------------------PNWLEILPELQVLILRS  120 (403)
Q Consensus        77 ~~~------------------p~~~~~l~~L~~L~l~~n~l~~~~------------------p~~~~~l~~L~~L~l~~  120 (403)
                      ...                  +..+..++.++.+++++|......                  ...+..++.|+.+++++
T Consensus       134 ~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~  213 (353)
T d1jl5a_         134 KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN  213 (353)
T ss_dssp             CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred             ccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            321                  123456778888888887654411                  11245678899999999


Q ss_pred             ccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhh
Q 015663          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKM  200 (403)
Q Consensus       121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (403)
                      |.... ++     ....++..+++..+.+......  ...+........   ....+.......  ..... ........
T Consensus       214 n~~~~-~~-----~~~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~~~~---~~~~l~~l~~~~--~~~~~-~~~~~~~~  279 (353)
T d1jl5a_         214 NLLKT-LP-----DLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSEN---IFSGLSELPPNL--YYLNA-SSNEIRSL  279 (353)
T ss_dssp             SCCSS-CC-----SCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSS---CCSEESCCCTTC--CEEEC-CSSCCSEE
T ss_pred             ccccc-cc-----cccccccccccccccccccccc--cccccccccccc---cccccccccchh--ccccc-ccCccccc
Confidence            87643 33     2345677888888877643221  111111111110   000111110000  00000 00011112


Q ss_pred             hhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCC
Q 015663          201 ERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLS  280 (403)
Q Consensus       201 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  280 (403)
                      ...+++|++|++++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|+.|++++|+++ .+|...   .+|+
T Consensus       280 ~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~  347 (353)
T d1jl5a_         280 CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVE  347 (353)
T ss_dssp             CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCC
T ss_pred             cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccC
Confidence            233688999999999998 67754   678999999999998 67753   568999999999998 667543   3567


Q ss_pred             EEeCc
Q 015663          281 VLNLS  285 (403)
Q Consensus       281 ~L~L~  285 (403)
                      .|.+.
T Consensus       348 ~L~~~  352 (353)
T d1jl5a_         348 DLRMN  352 (353)
T ss_dssp             EEECC
T ss_pred             eeECc
Confidence            77654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.3e-17  Score=136.31  Aligned_cols=177  Identities=28%  Similarity=0.307  Sum_probs=135.0

Q ss_pred             EECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCE
Q 015663           12 LDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEV   91 (403)
Q Consensus        12 L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~   91 (403)
                      ..++.+.+++.++.  ..+        .+++.|++++|.++. + +.+..+++|++|++++|++++ +++ ++++++|++
T Consensus        23 ~~l~~~~~~~~~~~--~~l--------~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~   88 (199)
T d2omxa2          23 TVLGKTNVTDTVSQ--TDL--------DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVD   88 (199)
T ss_dssp             HHTTCSSTTSEECH--HHH--------TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred             HHhCCCCCCCccCH--HHh--------cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCccccc
Confidence            34566666655431  112        344788888888873 4 357889999999999999984 443 899999999


Q ss_pred             EEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCCCccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCc
Q 015663           92 LNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENTTIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNIS  171 (403)
Q Consensus        92 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~  171 (403)
                      |++++|.+... + .+..++.|+.|++++|......+    +..+++|+.|++++|.+.....   +             
T Consensus        89 L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---l-------------  146 (199)
T d2omxa2          89 ILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDISA---L-------------  146 (199)
T ss_dssp             EECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCGG---G-------------
T ss_pred             ccccccccccc-c-ccccccccccccccccccccccc----cchhhhhHHhhhhhhhhccccc---c-------------
Confidence            99999998773 3 48899999999999998754322    3778999999999998864321   1             


Q ss_pred             ccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcCccccC
Q 015663          172 VEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIPSSLRN  251 (403)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  251 (403)
                                                    ..+++++.|++++|++++ ++ .++++++|++|++++|++++ ++ .+++
T Consensus       147 ------------------------------~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~  192 (199)
T d2omxa2         147 ------------------------------SGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAK  192 (199)
T ss_dssp             ------------------------------TTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred             ------------------------------cccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccC
Confidence                                          116788999999999985 33 37899999999999999984 44 5788


Q ss_pred             CCCCCEE
Q 015663          252 LTEVESL  258 (403)
Q Consensus       252 l~~L~~L  258 (403)
                      +++|+.|
T Consensus       193 L~~L~~L  199 (199)
T d2omxa2         193 LTNLESL  199 (199)
T ss_dssp             CTTCSEE
T ss_pred             CCCCCcC
Confidence            9999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.8e-17  Score=145.05  Aligned_cols=86  Identities=20%  Similarity=0.214  Sum_probs=46.6

Q ss_pred             CCCCcCEEEccCCcCcCC-CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccccc-ccCcCCCCCCccCCCC
Q 015663           61 KSCNLTSLNLNGNRLEGP-LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNR-FWGPIGENTTIVPFPS  138 (403)
Q Consensus        61 ~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~  138 (403)
                      ...+|++|+++++.++.. ++..+.++++|++|+++++.+++..+..+..+++|++|+++++. ++...-.. ....+++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~-l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch-hhHHHHh
Confidence            344666666666665522 23345566666666666666665555566666666666666642 22110000 0134566


Q ss_pred             ccEEEccCC
Q 015663          139 LRIIDLSHN  147 (403)
Q Consensus       139 L~~L~l~~n  147 (403)
                      |++|+++++
T Consensus       123 L~~L~ls~c  131 (284)
T d2astb2         123 LDELNLSWC  131 (284)
T ss_dssp             CCEEECCCC
T ss_pred             ccccccccc
Confidence            666666664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.5e-15  Score=116.64  Aligned_cols=104  Identities=29%  Similarity=0.460  Sum_probs=61.7

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSN  121 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  121 (403)
                      ++||+++|+++ .++ .+..+++|++|++++|+++ .+|+.|+.+++|++|++++|.|+. +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            35666666665 333 3566666666666666666 455566666666666666666665 33 3566666666666666


Q ss_pred             cccCcCCCCCCccCCCCccEEEccCCcccc
Q 015663          122 RFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus       122 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  151 (403)
                      ++... +....+..+++|++|++++|.++.
T Consensus        76 ~i~~~-~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQS-AAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSS-STTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCC-CCchhhcCCCCCCEEECCCCcCCc
Confidence            66432 221123556666666666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.8e-16  Score=138.51  Aligned_cols=207  Identities=16%  Similarity=0.192  Sum_probs=135.5

Q ss_pred             CCCCEEECcCCcCccc-CCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCC-cCCcC-CChhccCCCCCcE
Q 015663           39 LTHKVLDMRMNNFNGK-IPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNN-QINDN-FPNWLEILPELQV  115 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~  115 (403)
                      .+|++||++++.++.. ++..+..+++|++|+++++.++...+..++.+++|++|+++++ .++.. +......+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4679999999888743 4455778899999999999988777778888999999999985 45532 2223456889999


Q ss_pred             EEccccc-ccCcCCCCCCccCCCCccEEEccCCc--cccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEE
Q 015663          116 LILRSNR-FWGPIGENTTIVPFPSLRIIDLSHNE--FTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILT  192 (403)
Q Consensus       116 L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (403)
                      |+++++. +++...........++|+.|+++++.  ++.....                                     
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~-------------------------------------  168 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-------------------------------------  168 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-------------------------------------
T ss_pred             cccccccccccccchhhhcccccccchhhhccccccccccccc-------------------------------------
Confidence            9998863 32111000001234678888887642  2211110                                     


Q ss_pred             EeccchhhhhhcccceEEEcccC-cccccCCcccCCCCCCCEEEecCC-CCCCCcCccccCCCCCCEEeccCCcCCCC-C
Q 015663          193 IKGIDIKMERILTIFMTIDLSSN-KFQGGIPEVVGKLNLLKGLNISHN-NLTGDIPSSLRNLTEVESLDLSSNMLVGH-I  269 (403)
Q Consensus       193 ~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~  269 (403)
                            .+...+++|++|++++| .+++.....+..+++|++|++++| .+++.....++++++|+.|+++++ ++.. +
T Consensus       169 ------~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l  241 (284)
T d2astb2         169 ------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL  241 (284)
T ss_dssp             ------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCH
T ss_pred             ------ccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHH
Confidence                  11223678888888875 477677777788888888888885 566666666778888888888877 3322 2


Q ss_pred             CccccCCCCCCEEeCcCCcCccC
Q 015663          270 PTQLTSLKYLSVLNLSYNQFEGP  292 (403)
Q Consensus       270 p~~~~~l~~L~~L~L~~N~l~~~  292 (403)
                      +.....+++|   ++..++++..
T Consensus       242 ~~l~~~lp~L---~i~~~~ls~~  261 (284)
T d2astb2         242 QLLKEALPHL---QINCSHFTTI  261 (284)
T ss_dssp             HHHHHHSTTS---EESCCCSCCT
T ss_pred             HHHHHhCccc---cccCccCCCC
Confidence            2222334444   4455666643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=5.5e-15  Score=113.39  Aligned_cols=120  Identities=23%  Similarity=0.251  Sum_probs=94.6

Q ss_pred             cEEECCCCCCCCcCCCCCCCCCeEeCCCCCCCCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCC
Q 015663           10 YYLDLSNNFLTNIEYFPPTNMTQLNFDSNLTHKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHL   89 (403)
Q Consensus        10 ~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L   89 (403)
                      |+|||++|+++...  .+.++.        +|++|++++|.++ .+|+.|+.+++|+.|++++|+++ .+| .+.++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~--------~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L   67 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLL--------LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRL   67 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGT--------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSC
T ss_pred             CEEEcCCCCCCCCc--ccccCC--------CCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-cccccccc
Confidence            68999999998664  244444        4499999999998 67888999999999999999999 555 58999999


Q ss_pred             CEEEccCCcCCcCCC-hhccCCCCCcEEEcccccccCcCCCCC-CccCCCCccEE
Q 015663           90 EVLNVGNNQINDNFP-NWLEILPELQVLILRSNRFWGPIGENT-TIVPFPSLRII  142 (403)
Q Consensus        90 ~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L  142 (403)
                      ++|++++|+++.... ..+..+++|++|++++|+++....... ....+|+|+.|
T Consensus        68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999999987432 568899999999999999865322111 11345666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-17  Score=156.58  Aligned_cols=92  Identities=20%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             CccEEECCCCCCCCcCC----CCCCCCCeEeCCCC-----------------CCCCEEECcCCcCccc----CCcccc-C
Q 015663            8 TLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSN-----------------LTHKVLDMRMNNFNGK----IPRKFV-K   61 (403)
Q Consensus         8 ~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n-----------------~~L~~L~Ls~n~l~~~----~p~~~~-~   61 (403)
                      +|+.||++.|++++..-    ..+++++.|+|++|                 ++|+.|||++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            46667777777765421    44566666666666                 5677777777766521    122222 2


Q ss_pred             CCCcCEEEccCCcCcCC----CCccccCCCCCCEEEccCCcC
Q 015663           62 SCNLTSLNLNGNRLEGP----LPPSLVNCHHLEVLNVGNNQI   99 (403)
Q Consensus        62 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l   99 (403)
                      .++|++|++++|+++..    ++..+..+++|++|++++|.+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            24577777777766532    334456667777777776654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.2e-15  Score=118.81  Aligned_cols=61  Identities=16%  Similarity=0.331  Sum_probs=28.1

Q ss_pred             cCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccc
Q 015663           60 VKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRF  123 (403)
Q Consensus        60 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  123 (403)
                      .+..++++|+|++|+|+ .++..+..+++|++|++++|.|+.. + .+..+++|++|++++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCC
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccc
Confidence            34444455555555554 3343344444555555555554432 1 244444444444444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=117.35  Aligned_cols=107  Identities=22%  Similarity=0.263  Sum_probs=54.6

Q ss_pred             CCEEECcCCcCcccCCccccCCCCcCEEEccCCcCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           41 HKVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGNRLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        41 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      ++.|||++|.|+ .+++.+..+++|+.|++++|+++ .++ .|..+++|++|++++|+++...+..+..+++|++|++++
T Consensus        20 lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          20 DRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             CEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             CcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            355555555555 33444445555555555555555 232 355555555555555555554344444555555555555


Q ss_pred             ccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015663          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus       121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  151 (403)
                      |++... ++...+..+++|++|++++|.++.
T Consensus        97 N~i~~~-~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          97 NSLVEL-GDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CCCCCG-GGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             cccccc-ccccccccccccchhhcCCCcccc
Confidence            555321 111122455555666666555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=2.1e-15  Score=137.61  Aligned_cols=238  Identities=16%  Similarity=0.111  Sum_probs=156.1

Q ss_pred             CCCccEEECCCCCCCCcCC----CCCCCCCeEeCCCCCCCCEEECcCCcCccc----------CCccccCCCCcCEEEcc
Q 015663            6 IATLYYLDLSNNFLTNIEY----FPPTNMTQLNFDSNLTHKVLDMRMNNFNGK----------IPRKFVKSCNLTSLNLN   71 (403)
Q Consensus         6 ~~~L~~L~Ls~n~l~~~~~----~~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~----------~p~~~~~l~~L~~L~L~   71 (403)
                      .+.++.|+|++|.+.....    ..+...        ++|+.++++++.....          +...+..+++|+.|+|+
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~--------~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASK--------KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTC--------TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhC--------CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            4567777777776654321    112222        4557888877654321          12335567899999999


Q ss_pred             CCcCcCC----CCccccCCCCCCEEEccCCcCCcCCChh-------------ccCCCCCcEEEcccccccCcCCCCC--C
Q 015663           72 GNRLEGP----LPPSLVNCHHLEVLNVGNNQINDNFPNW-------------LEILPELQVLILRSNRFWGPIGENT--T  132 (403)
Q Consensus        72 ~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~--~  132 (403)
                      +|.++..    +...+..+++|++|++++|.+.......             ....+.|+.+.+++|.+.......+  .
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            9998854    3334557899999999999875321111             1356789999999998743221111  1


Q ss_pred             ccCCCCccEEEccCCccccccchhhhhhhhhhcccCCCcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEc
Q 015663          133 IVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNNISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDL  212 (403)
Q Consensus       133 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  212 (403)
                      +...+.|+.|++++|.++.......+.                                       ......+.|+.|++
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~---------------------------------------~~l~~~~~L~~L~L  222 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLL---------------------------------------EGLAYCQELKVLDL  222 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHH---------------------------------------TTGGGCTTCCEEEC
T ss_pred             hhhhhhhcccccccccccccccccchh---------------------------------------hhhcchhhhccccc
Confidence            245678999999999887432111110                                       01122678999999


Q ss_pred             ccCccccc----CCcccCCCCCCCEEEecCCCCCCCcCc----cccC--CCCCCEEeccCCcCCCCC----Cccc-cCCC
Q 015663          213 SSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGDIPS----SLRN--LTEVESLDLSSNMLVGHI----PTQL-TSLK  277 (403)
Q Consensus       213 s~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~--l~~L~~L~Ls~n~l~~~~----p~~~-~~l~  277 (403)
                      ++|.++..    +...+..+++|++|+|++|.+++....    .+..  .+.|++|++++|+++...    ...+ .+++
T Consensus       223 s~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~  302 (344)
T d2ca6a1         223 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  302 (344)
T ss_dssp             CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC
Confidence            99998643    445677889999999999999753222    2222  367999999999987532    3333 2578


Q ss_pred             CCCEEeCcCCcCc
Q 015663          278 YLSVLNLSYNQFE  290 (403)
Q Consensus       278 ~L~~L~L~~N~l~  290 (403)
                      .|+.|++++|.+.
T Consensus       303 ~L~~L~l~~N~~~  315 (344)
T d2ca6a1         303 DLLFLELNGNRFS  315 (344)
T ss_dssp             TCCEEECTTSBSC
T ss_pred             CCCEEECCCCcCC
Confidence            8999999999986

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=3.7e-15  Score=135.92  Aligned_cols=212  Identities=17%  Similarity=0.225  Sum_probs=150.3

Q ss_pred             CCCCEEECcCCcCccc----CCccccCCCCcCEEEccCCcCcCC----------CCccccCCCCCCEEEccCCcCCcCC-
Q 015663           39 LTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP----------LPPSLVNCHHLEVLNVGNNQINDNF-  103 (403)
Q Consensus        39 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----------~p~~~~~l~~L~~L~l~~n~l~~~~-  103 (403)
                      .+++.|+|++|.+...    +...+...++|+.|+++++.....          +...+..+++|+.|++++|.++... 
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            6679999999988643    334566789999999998765421          1233567899999999999987643 


Q ss_pred             ---ChhccCCCCCcEEEcccccccCcCCCCC-----------CccCCCCccEEEccCCccccccchhhhhhhhhhcccCC
Q 015663          104 ---PNWLEILPELQVLILRSNRFWGPIGENT-----------TIVPFPSLRIIDLSHNEFTGVLLTGYLDNFKAMMHGNN  169 (403)
Q Consensus       104 ---p~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~~~~  169 (403)
                         ...+...++|+.|++++|.+.......+           .....+.|+.+++++|.++......+...         
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~---------  181 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT---------  181 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH---------
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch---------
Confidence               2344567899999999998632110000           01346789999999998874432222111         


Q ss_pred             CcccccccCCCCCCCcceEEEEEEeccchhhhhhcccceEEEcccCccccc-----CCcccCCCCCCCEEEecCCCCCCC
Q 015663          170 ISVEVDYMTPLNSSNYYESIILTIKGIDIKMERILTIFMTIDLSSNKFQGG-----IPEVVGKLNLLKGLNISHNNLTGD  244 (403)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~  244 (403)
                                                     ....+.++.|++++|.++..     +...+...++|+.|+|++|.++..
T Consensus       182 -------------------------------l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  230 (344)
T d2ca6a1         182 -------------------------------FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL  230 (344)
T ss_dssp             -------------------------------HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred             -------------------------------hhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccc
Confidence                                           12256789999999998742     344567789999999999998632


Q ss_pred             ----cCccccCCCCCCEEeccCCcCCCCCCcc----cc--CCCCCCEEeCcCCcCc
Q 015663          245 ----IPSSLRNLTEVESLDLSSNMLVGHIPTQ----LT--SLKYLSVLNLSYNQFE  290 (403)
Q Consensus       245 ----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~--~l~~L~~L~L~~N~l~  290 (403)
                          +...+...++|+.|++++|.+++.....    +.  ..+.|++|++++|+++
T Consensus       231 g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             ccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence                3455678899999999999997643222    22  2467999999999986

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=6.4e-15  Score=122.95  Aligned_cols=56  Identities=23%  Similarity=0.312  Sum_probs=30.8

Q ss_pred             cccceEEEcccCcccccCC-cccCCCCCCCEEEecCCCCCCCcCc----------cccCCCCCCEEe
Q 015663          204 LTIFMTIDLSSNKFQGGIP-EVVGKLNLLKGLNISHNNLTGDIPS----------SLRNLTEVESLD  259 (403)
Q Consensus       204 ~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~----------~~~~l~~L~~L~  259 (403)
                      +++|+.|++++|+++.... ..+..+++|+.|++++|.+....+.          .+..+++|+.||
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            3455556666666552211 3456666666666666665432221          145577777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.2e-12  Score=101.19  Aligned_cols=106  Identities=19%  Similarity=0.086  Sum_probs=84.9

Q ss_pred             CEEECcCCcCcccCCccccCCCCcCEEEccCC-cCcCCCCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEccc
Q 015663           42 KVLDMRMNNFNGKIPRKFVKSCNLTSLNLNGN-RLEGPLPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRS  120 (403)
Q Consensus        42 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~  120 (403)
                      +.++.+++.+. ..|..+..+++|++|++++| .++...+++|.++++|+.|++++|+|+.+.|.+|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            56788888877 66778888899999999766 58866667789999999999999999988788899999999999999


Q ss_pred             ccccCcCCCCCCccCCCCccEEEccCCcccc
Q 015663          121 NRFWGPIGENTTIVPFPSLRIIDLSHNEFTG  151 (403)
Q Consensus       121 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  151 (403)
                      |+++...+..+   ...+|+.|++++|.+.-
T Consensus        90 N~l~~l~~~~~---~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          90 NALESLSWKTV---QGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             SCCSCCCSTTT---CSCCCCEEECCSSCCCC
T ss_pred             CCCcccChhhh---ccccccccccCCCcccC
Confidence            99865443333   33469999999998864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.9e-12  Score=102.16  Aligned_cols=107  Identities=21%  Similarity=0.146  Sum_probs=78.9

Q ss_pred             cceEEEcccCcccccCCcccCCCCCCCEEEecCCC-CCCCcCccccCCCCCCEEeccCCcCCCCCCccccCCCCCCEEeC
Q 015663          206 IFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNN-LTGDIPSSLRNLTEVESLDLSSNMLVGHIPTQLTSLKYLSVLNL  284 (403)
Q Consensus       206 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  284 (403)
                      ..+.++.+++.++ ..|..+..+++|++|++++|+ ++...+..|.++++|+.|++++|+|+...+.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456778888777 567777788888888887664 77555667888888888888888888777888888888888888


Q ss_pred             cCCcCccCCCCC-CCCCCCCCCcCCCCCCCC
Q 015663          285 SYNQFEGPIPRG-SQFNTFPNDSYVGNSGLC  314 (403)
Q Consensus       285 ~~N~l~~~ip~~-~~~~~~~~~~~~gn~~lc  314 (403)
                      ++|+|+ .+|.+ .....+..+.+.+||+-|
T Consensus        88 s~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          88 SFNALE-SLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             CSSCCS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cCCCCc-ccChhhhccccccccccCCCcccC
Confidence            888888 55554 333345555566665554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.4e-13  Score=128.06  Aligned_cols=192  Identities=17%  Similarity=0.144  Sum_probs=110.9

Q ss_pred             ccCCCCCCEEEccCCcCCcC-----CChhccCCCCCcEEEcccccccCcCCCCC--CccCCCCccEEEccCCccccccch
Q 015663           83 LVNCHHLEVLNVGNNQINDN-----FPNWLEILPELQVLILRSNRFWGPIGENT--TIVPFPSLRIIDLSHNEFTGVLLT  155 (403)
Q Consensus        83 ~~~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~  155 (403)
                      +...+.++.+++++|.+...     .+........++.+++++|.+........  .+...+.++.+++++|.++.....
T Consensus       222 l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~  301 (460)
T d1z7xw1         222 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  301 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             ccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34578899999999876431     22334456789999999997743221100  124567889999999988643222


Q ss_pred             hhhhhhh----hhcccCCCcccccccCCCCCCCcceEEEEEEeccc--hhhhhhcccceEEEcccCccccc----CCccc
Q 015663          156 GYLDNFK----AMMHGNNISVEVDYMTPLNSSNYYESIILTIKGID--IKMERILTIFMTIDLSSNKFQGG----IPEVV  225 (403)
Q Consensus       156 ~~~~~l~----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~L~Ls~n~l~~~----~p~~~  225 (403)
                      .+...+.    .|+.+......   +.              .....  .......++|++|+|++|++++.    ++..+
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~~---l~--------------~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l  364 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSCS---FT--------------AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL  364 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSC---CB--------------GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             hhhccccccccccccccccccc---hh--------------hhhhhhcccccccccchhhhheeeecccCcccchhhhhh
Confidence            2111111    11111110000   00              00000  11223356788888888888643    23333


Q ss_pred             C-CCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCcCCCCCCccc----c-CCCCCCEEeCcCCcCcc
Q 015663          226 G-KLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGHIPTQL----T-SLKYLSVLNLSYNQFEG  291 (403)
Q Consensus       226 ~-~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~-~l~~L~~L~L~~N~l~~  291 (403)
                      . ..+.|++|+|++|+++..    ++..+...++|++|||++|+++......+    . ....|+.|++.+|.+..
T Consensus       365 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             hcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            3 456788888888888632    34455667888888888888875432222    2 33468888888887753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=1.9e-14  Score=119.99  Aligned_cols=76  Identities=25%  Similarity=0.293  Sum_probs=48.8

Q ss_pred             ccceEEEcccCcccccCCcccCCCCCCCEEEecCCCCCCCcC--ccccCCCCCCEEeccCCcCCCCCCcc----------
Q 015663          205 TIFMTIDLSSNKFQGGIPEVVGKLNLLKGLNISHNNLTGDIP--SSLRNLTEVESLDLSSNMLVGHIPTQ----------  272 (403)
Q Consensus       205 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~p~~----------  272 (403)
                      +.|+.|++++|.++. ++ .+..+++|+.|++++|+++. ++  ..+..+++|+.|++++|++....+..          
T Consensus        93 ~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~v  169 (198)
T d1m9la_          93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHCCEEECSEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHH
T ss_pred             ccccccccccccccc-cc-cccccccccccccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHH
Confidence            456667777777663 22 35566777788888877763 33  35677777888888877775433321          


Q ss_pred             ccCCCCCCEEe
Q 015663          273 LTSLKYLSVLN  283 (403)
Q Consensus       273 ~~~l~~L~~L~  283 (403)
                      +..+++|+.||
T Consensus       170 i~~lp~L~~LD  180 (198)
T d1m9la_         170 VKRLPNLKKLD  180 (198)
T ss_dssp             HHHCSSCCEES
T ss_pred             HHHCCCcCEeC
Confidence            45567777766

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.2e-09  Score=85.63  Aligned_cols=88  Identities=23%  Similarity=0.198  Sum_probs=51.4

Q ss_pred             CccccCCCCcCEEEccCCcCcCC--CCccccCCCCCCEEEccCCcCCcCCChhccCCCCCcEEEcccccccCcCCCCC--
Q 015663           56 PRKFVKSCNLTSLNLNGNRLEGP--LPPSLVNCHHLEVLNVGNNQINDNFPNWLEILPELQVLILRSNRFWGPIGENT--  131 (403)
Q Consensus        56 p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~--  131 (403)
                      +..+..+++|++|++++|+++..  ++..+..+++|+.|++++|.|+...+-.+.....|+.|++++|.+........  
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            33444567777777777777732  12335567777777777777776433333344567777777777654433210  


Q ss_pred             ---CccCCCCccEEE
Q 015663          132 ---TIVPFPSLRIID  143 (403)
Q Consensus       132 ---~~~~l~~L~~L~  143 (403)
                         .+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               123456666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.3e-07  Score=74.94  Aligned_cols=82  Identities=23%  Similarity=0.193  Sum_probs=57.9

Q ss_pred             hhcccceEEEcccCcccccC--CcccCCCCCCCEEEecCCCCCCCcCccccCCCCCCEEeccCCcCCCCCCc-------c
Q 015663          202 RILTIFMTIDLSSNKFQGGI--PEVVGKLNLLKGLNISHNNLTGDIPSSLRNLTEVESLDLSSNMLVGHIPT-------Q  272 (403)
Q Consensus       202 ~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-------~  272 (403)
                      ..++.|++|+|++|+++...  +..+..+++|+.|+|++|.++...+-.+.....|+.|++++|.+......       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            34778888999999888432  34456788888889998888843332344456788888888888765432       2


Q ss_pred             ccCCCCCCEEe
Q 015663          273 LTSLKYLSVLN  283 (403)
Q Consensus       273 ~~~l~~L~~L~  283 (403)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            56678888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=3.7e-06  Score=66.65  Aligned_cols=84  Identities=13%  Similarity=0.135  Sum_probs=43.7

Q ss_pred             ccceEEEcccCccccc----CCcccCCCCCCCEEEecCCCCCCC----cCccccCCCCCCEEeccCCcCCCC-------C
Q 015663          205 TIFMTIDLSSNKFQGG----IPEVVGKLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDLSSNMLVGH-------I  269 (403)
Q Consensus       205 ~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~-------~  269 (403)
                      +.|+.|+|++|.++..    +...+...+.|++|+|++|.++..    +-..+...++|+.|++++|++...       +
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            3455566666555422    112233445666666666666532    122344556677777766654422       2


Q ss_pred             CccccCCCCCCEEeCcCCc
Q 015663          270 PTQLTSLKYLSVLNLSYNQ  288 (403)
Q Consensus       270 p~~~~~l~~L~~L~L~~N~  288 (403)
                      ...+...+.|+.|+++.+.
T Consensus       124 ~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         124 MMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCCccEeeCcCCC
Confidence            3334445667777776554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.64  E-value=1.7e-05  Score=62.74  Aligned_cols=109  Identities=14%  Similarity=0.091  Sum_probs=67.7

Q ss_pred             CCCCEEECcCC-cCccc----CCccccCCCCcCEEEccCCcCcC----CCCccccCCCCCCEEEccCCcCCcCC----Ch
Q 015663           39 LTHKVLDMRMN-NFNGK----IPRKFVKSCNLTSLNLNGNRLEG----PLPPSLVNCHHLEVLNVGNNQINDNF----PN  105 (403)
Q Consensus        39 ~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~----p~  105 (403)
                      ++|+.|+|+++ .+...    +-..+...+.|++|+|++|.++.    .+...+...+.|++|++++|.++...    ..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            56677777763 45422    23345566778888888887763    22334556678888888888876532    23


Q ss_pred             hccCCCCCcEEEcccccccCc-------CCCCCCccCCCCccEEEccCCcc
Q 015663          106 WLEILPELQVLILRSNRFWGP-------IGENTTIVPFPSLRIIDLSHNEF  149 (403)
Q Consensus       106 ~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~l~~L~~L~l~~n~l  149 (403)
                      .+...+.|++|++++|.....       +..  .+..-++|+.|+++.+..
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~--~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMM--AIEENESLLRVGISFASM  143 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHH--HHHHCSSCCEEECCCCCH
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHH--HHHhCCCccEeeCcCCCc
Confidence            455667788888888764321       111  113457788888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.05  E-value=4.8e-05  Score=59.92  Aligned_cols=62  Identities=26%  Similarity=0.320  Sum_probs=29.6

Q ss_pred             CCCCCCEEEecCCCCCCC----cCccccCCCCCCEEec--cCCcCCCC----CCccccCCCCCCEEeCcCCc
Q 015663          227 KLNLLKGLNISHNNLTGD----IPSSLRNLTEVESLDL--SSNMLVGH----IPTQLTSLKYLSVLNLSYNQ  288 (403)
Q Consensus       227 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--s~n~l~~~----~p~~~~~l~~L~~L~L~~N~  288 (403)
                      ..+.++.+++++|.+...    +...+...++|+.++|  ++|.+...    +...+...+.|+.|+++.++
T Consensus        72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            344555555555555421    1233444555655444  34444321    23334455666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.80  E-value=0.00026  Score=55.52  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=74.4

Q ss_pred             CCCCccEEECCC-CCCCCcCCC-CCCCCCeEeCCCCCCCCEEECcCCcCccc----CCccccCCCCcCEEEccCCcCcCC
Q 015663            5 GIATLYYLDLSN-NFLTNIEYF-PPTNMTQLNFDSNLTHKVLDMRMNNFNGK----IPRKFVKSCNLTSLNLNGNRLEGP   78 (403)
Q Consensus         5 ~~~~L~~L~Ls~-n~l~~~~~~-~~~~L~~L~l~~n~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~   78 (403)
                      +.+.|++|+|++ +.++...-. -+.     .+..|+.|+.|++++|.++..    +-+.+...+.++.+++++|.++..
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~-----al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAE-----ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHH-----HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHH-----HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            457888999987 456543210 000     112335568889999988743    233455678999999999988732


Q ss_pred             ----CCccccCCCCCCEEEcc--CCcCCc----CCChhccCCCCCcEEEcccccc
Q 015663           79 ----LPPSLVNCHHLEVLNVG--NNQIND----NFPNWLEILPELQVLILRSNRF  123 (403)
Q Consensus        79 ----~p~~~~~l~~L~~L~l~--~n~l~~----~~p~~~~~l~~L~~L~l~~n~l  123 (403)
                          +...+...++|+.++|+  +|.+..    .+...+...+.|+.|+++.+..
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                33456778889886664  566654    2334556788999999977653