Citrus Sinensis ID: 015675

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELHNEEDAKEDTVEALQLQNNE
Secondary Structure (PSIPRED)
cccccccEEEcccHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEccHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEEcccccccccccccccccccccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccHHHHHHHHccHHHHHHHHHHHHHHHHcHcccccccccccccccccccccccccccccccccccccccHcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEcccHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHcccccccccccccccccccccccccHHHHHHcHHHHHHcccccccccHHHHHHHccHccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEccccccccccccccccccccccccccEEccccccEcccccccccccccccEEEccccHHHHHHccccccccccccccHcccHHHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mawcelcrvdcNTLEILEQHkngkrhkrnlrthaDLQNLNkciagqqniqmpnsgsqpevsqpekveecrekqpleslpsqtllgnasnetemQKNTvdsvkepqrksrdqpdsrgcgskrkmrggrggkymrtneggprrpieppkpkgvipLICElcnvkcesqvvfdshlvgkkHLANVKRFHGHRALYGEAalqslypasfnslSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAqipglvgmvapapapgssqetqyqhdfrtqrsmatteegskntvMVEAEDQQqsiatdlespetvgietkeknaslpqdkkiisslenpdntasaskcevasggeavqqqhgddlvdseneqdlelhneedaKEDTVEALQLQNNE
Flexible Loop (DISEMBL)
mawcelcrVDCNTLEILeqhkngkrhkrnlRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECRekqpleslpsqtllgnasnetemqkntvdsvkepqrksrdqpdsrgcgskrkmrggrggkymrtneggprrpieppkpkGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQqsiatdlespetvgietkeknaslpqdKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELhneedakedTVEALQLQNNE
Low Complexity Region (SEG)
MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDsrgcgskrkmrggrggkymrTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSqaqaqaqaPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELHNEEDAKEDTVEALQLQNNE
Disordered region (IsUnstruct)
**WCELCRVDCNTLEILEQ**********************C***********************************************************************************************************GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPG**********************************************************************************************************************************************
Disordered Region (DISOPRED)
MAWCELCRVDCNTLEILEQHKNGKRHKRN****************************************************************************************************************************LICELCNVKCESQVVFDSHLVGKK**********************************************************************************************************************************************************************************************************************DTV**LQL****
Disordered Region (DISEMBL)
MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQM*************************SLPSQTLLGNASNE*************************************GGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPA***********QHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLE*****************************DSENEQDLELHNEEDAKEDTVEALQLQNNE
Disordered Region (DISPRO)
MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKC******************************************************************************************************PPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVA***************DFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLE**E*VGI*****NASLP*DKKIISSL*N********************************EQDL*LHNEEDAKEDTVEALQLQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKNTVMVEAEDQQQSIATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTASASKCEVASGGEAVQQQHGDDLVDSENEQDLELHNEEDAKEDTVEALQLQNNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
297734533	679	unnamed protein product [Vitis vinifera]	0.806	0.478	0.468	3e-60
147819081	628	hypothetical protein VITISV_000640 [Viti	0.729	0.468	0.492	3e-58
255576046	725	conserved hypothetical protein [Ricinus	0.598	0.332	0.422	2e-43
356495137	446	PREDICTED: uncharacterized protein LOC10	0.635	0.573	0.446	4e-42
147812148	618	hypothetical protein VITISV_009309 [Viti	0.528	0.344	0.434	1e-40
413955253	396	hypothetical protein ZEAMMB73_384238 [Ze	0.545	0.555	0.277	3e-17
226491021	396	uncharacterized protein LOC100272823 [Ze	0.464	0.472	0.297	4e-17
224141481	289	predicted protein [Populus trichocarpa]	0.325	0.453	0.287	8e-10
225457301	424	PREDICTED: uncharacterized protein LOC10	0.421	0.400	0.288	4e-09
388501728	173	unknown [Medicago truncatula]	0.245	0.572	0.433	2e-08

>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 172/367 (46%), Positives = 223/367 (60%), Gaps = 42/367 (11%)

Query: 1   MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEV 60
           MAWCELCRVDCNTLEILEQHKNGKRHK+NL  + +LQNLNK I G QN QMP S  +P++
Sbjct: 120 MAWCELCRVDCNTLEILEQHKNGKRHKKNLLVYQELQNLNKLITGVQNEQMPISDFKPQL 179

Query: 61  SQPEKVEECREKQPLESLPSQTLLGNAS---NETEMQKNTVDS--VKEPQRKSR-DQPDS 114
            Q E+V    +KQ     PSQ    N +    +TE +K+ V +   +E +RK+R D   +
Sbjct: 180 IQSERVGGSEDKQ-----PSQGTGANGTEKEQQTEAEKSEVSAQPTEEQERKARMDHFQA 234

Query: 115 RGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLV 174
            G G KRKMRGGRGGK MR          EPPKPK +IPLICELCNVKCESQVVFDSHL 
Sbjct: 235 PGRGLKRKMRGGRGGKRMRQ--------FEPPKPKEMIPLICELCNVKCESQVVFDSHLA 286

Query: 175 GKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQV-QQGVNDPQVVLAQLLTY 233
           GKKH +N+KRFHG++A+    ALQ+L P++ N+ S+  I QV QQGV+  Q + AQ + Y
Sbjct: 287 GKKHHSNLKRFHGYQAIIA-GALQALIPSNPNAPSNFFIPQVHQQGVSGSQGLPAQPMPY 345

Query: 234 VLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATT 293
            + Q QA   APG  +E                 P PAP S+ ETQ +   +T  S AT+
Sbjct: 346 -MQQGQAPGMAPGPASE-----------------PEPAPVSALETQDKEGTKTVESQATS 387

Query: 294 EEGSKNTVMVEAEDQQQS--IATDLESPETVGIETKEKNASLPQDKKIISSLENPDNTAS 351
           E G +NTV  EA  Q Q   IA++  S  +       + ++  + K +I  +++PD   S
Sbjct: 388 EAGGQNTVTAEANSQLQPDIIASEASSGVSTNTTIVSETSAF-EGKDVIPPIDDPDVAPS 446

Query: 352 ASKCEVA 358
            +K + A
Sbjct: 447 ENKVKGA 453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819081|emb|CAN65350.1| hypothetical protein VITISV_000640 [Vitis vinifera]

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 164/333 (49%), Positives = 203/333 (60%), Gaps = 39/333 (11%)

Query: 1   MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEV 60
           MAWCELCRVDCNTLEILEQHKNGKRHK+NL  + +LQNLNK I G QN QMP S  +P++
Sbjct: 278 MAWCELCRVDCNTLEILEQHKNGKRHKKNLLVYQELQNLNKLITGVQNEQMPISDFKPQL 337

Query: 61  SQPEKVEECREKQPLESLPSQTLLGNAS---NETEMQKNTVDS--VKEPQRKSR-DQPDS 114
            Q E+V    + Q     PSQ    N +    +TE +K+ V +   +E +RK+R D   +
Sbjct: 338 IQSERVGGSEDXQ-----PSQGTGANGTEKEQQTEAEKSEVSAQPTEEQERKARMDHFQA 392

Query: 115 RGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLV 174
            G G KRKMRGGRGGK MR          EPPKPK +IPLICELCNVKCESQVVFDSHL 
Sbjct: 393 PGRGLKRKMRGGRGGKRMRQ--------FEPPKPKEMIPLICELCNVKCESQVVFDSHLA 444

Query: 175 GKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVITQV-QQGVNDPQVVLAQLLTY 233
           GKKH +N+KRFHG++A+    ALQ+L P++ N+ S+  I QV QQGV+  Q + AQ +  
Sbjct: 445 GKKHHSNLKRFHGYQAIIA-GALQALIPSNPNAPSNFFIPQVHQQGVSGSQGLPAQPMP- 502

Query: 234 VLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATT 293
            + Q QA   APGL +E                 P PAP S+ ETQ +   +T  S AT+
Sbjct: 503 XMQQGQAPGMAPGLASE-----------------PEPAPVSALETQDKEGTKTVESQATS 545

Query: 294 EEGSKNTVMVEAEDQQQSIATDLESPETVGIET 326
           E G +NTV  EA  Q Q      E+   V   T
Sbjct: 546 EAGGQNTVTAEANSQLQPXXIASEAXSGVSTNT 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576046|ref|XP_002528918.1| conserved hypothetical protein [Ricinus communis] gi|223531620|gb|EEF33447.1| conserved hypothetical protein [Ricinus communis]

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/258 (42%), Positives = 153/258 (59%), Gaps = 17/258 (6%)

Query: 1   MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEV 60
           +AWCELCRVDC ++E+LEQHKNGKRHK+NL    +L+   K     +N Q     ++PE 
Sbjct: 446 IAWCELCRVDCTSVEVLEQHKNGKRHKKNLLRIEELKKAVKFGEEIKNDQETIINTKPED 505

Query: 61  SQ-PEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQP------- 112
            Q P+  ++  E++  E+L  +          ++Q NT +  + P  +  DQ        
Sbjct: 506 YQEPQVAQDGEEQKTAENLTVEATNDEHIMVRDLQDNTGEKSEVPVEELSDQQGMKPKMN 565

Query: 113 --DSRGCGSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFD 170
             D+R  G KRK++GGRGGK M+T+E   RRP+EPPKPK V+PLIC+LCNVKC+++ V D
Sbjct: 566 LFDNRRRGMKRKIKGGRGGKRMKTSETH-RRPVEPPKPKVVVPLICDLCNVKCDTREVLD 624

Query: 171 SHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLS-SSVITQVQQGVNDPQVVLAQ 229
            HL GKKH+A +KRF GH+A+YG   LQ+LYP   N ++ + +++Q  Q    PQ     
Sbjct: 625 RHLSGKKHIAKLKRFEGHQAIYGPTGLQALYPP--NPVAQTHLVSQGPQPFYAPQ---GS 679

Query: 230 LLTYVLSQAQAQAQAPGL 247
            L    SQA       GL
Sbjct: 680 FLPRFPSQAHQSTAGVGL 697

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495137|ref|XP_003516437.1| PREDICTED: uncharacterized protein LOC100794880 [Glycine max]

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/280 (44%), Positives = 177/280 (63%), Gaps = 24/280 (8%)

Query: 4   CELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQP 63
           CE+C+V+CN+ EILEQHK GK+H++N+R H +LQ  N  I  QQ+ ++P S       QP
Sbjct: 145 CEICKVECNSPEILEQHKVGKKHQKNMRVHEELQRRN-AINEQQSGEIPTSQLN-LTDQP 202

Query: 64  EKVEEC-REKQPLESLPSQTLLGNASNETEMQKNTVDSVKE-----PQRKSRDQPDSRGC 117
           ++V+E  +   P E++ S  ++ N   E ++Q N V ++ E     P+ K+ D   +RG 
Sbjct: 203 KEVQESEKNGHPTENMGSGVIINNHEEEIQLQNN-VGNMSEVPAEVPEGKTVDNSAARGR 261

Query: 118 GSKRKMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKK 177
           G KRK +GG+GGKYMRTN+G   +P+EP +    +   CELC+VKCESQVV+ SH+ GKK
Sbjct: 262 GLKRKKKGGKGGKYMRTNDGS--KPVEPAQ---TMSFRCELCDVKCESQVVYQSHMTGKK 316

Query: 178 HLANVKRFHG----HRALYGE-AALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLT 232
           HL+ ++R        +AL G  + LQ++YP   N+LS+++  QVQQG NDPQV+LAQLL 
Sbjct: 317 HLSKLRRASSGVGQQQALSGALSGLQAVYPPDINALSNAINAQVQQGDNDPQVLLAQLLM 376

Query: 233 YVLSQAQAQAQAPGLLAEQLRGLAAQIPGLVGMVAPAPAP 272
            VLSQAQ  A AP   A     +A+QIP    M  P+  P
Sbjct: 377 TVLSQAQVPATAPVTGA-----IASQIPAPTSMAGPSYEP 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812148|emb|CAN77034.1| hypothetical protein VITISV_009309 [Vitis vinifera]

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/244 (43%), Positives = 146/244 (59%), Gaps = 31/244 (12%)

Query: 1   MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEV 60
           +AWCELCRVDC +LEILEQHKNGKRHK+NL+   +L++ N       N  +  S  QPE+
Sbjct: 119 VAWCELCRVDCTSLEILEQHKNGKRHKKNLQRIEELKSANLTGTEIPNEPVGESKFQPEI 178

Query: 61  SQPEKVEECREKQ--PLESLPSQTLLGNASNETEM---QKNTVDSVKEPQRKSRDQPDSR 115
           +Q  + E   E +  P ++LPS+ +    +NE EM   QKN  D V++P++   ++PDS+
Sbjct: 179 AQEGEEESDEEGEENPEKNLPSEAI----ANENEMVGEQKN--DIVEQPEKPMEERPDSQ 232

Query: 116 GCGSKRKMRGGRGGKYMRTNEG-------------GPRRPIEPPKPKGVIPLICELCNVK 162
               K +M      ++                    PRR IEPPKPK VIPLIC+LCNVK
Sbjct: 233 V--GKPRMEHFDNWRHGMKRRMRGGRGGKRMKMFEAPRRSIEPPKPKVVIPLICDLCNVK 290

Query: 163 CESQVVFDSHLVGKKHLANVKRFHGHRALYGEAALQSLYPASFNSLSSSVI---TQVQQG 219
           C++Q VFD HL GKKH+A +KRF GH+A+YG   LQ+LYP   N ++ +++      QQG
Sbjct: 291 CDTQEVFDRHLSGKKHIAKLKRFEGHQAMYGPMGLQALYPP--NPIAQTLLHPQGHQQQG 348

Query: 220 VNDP 223
              P
Sbjct: 349 FYSP 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413955253|gb|AFW87902.1| hypothetical protein ZEAMMB73_384238 [Zea mays]

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 129/306 (42%), Gaps = 86/306 (28%)

Query: 2   AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVS 61
           AWC++C V CN+ EILEQHKNGKRHKR+++   D+  L        ++  P+S    EV 
Sbjct: 79  AWCDICHVGCNSKEILEQHKNGKRHKRSVQRMQDMARLQGTTPAIADMGAPSSSQLAEVE 138

Query: 62  ------------------------QPEKVEECREKQPLESLPSQTLLGNASNETEMQKNT 97
                                    PE V        +  +P  +   N ++ T    + 
Sbjct: 139 GPSRSVHMVPPLGSTSLSGEHKDLAPENVGASVYGVQITEVPGSSSKQNKTHHTSTVGHG 198

Query: 98  VDSVKE---------PQRKSRD----QPDSRGC-----------------GSKRKMRG-G 126
           V++  E         P  + +D     P++ G                  GSKRK  G G
Sbjct: 199 VEAQVELHVAVQACQPSNEMKDGGEAPPNATGPSNAQLVEARMGVNGNNNGSKRKPTGAG 258

Query: 127 RGGKYMRTNEGGPRRPIEPPKPKGVI--PLICELCNVKCESQVVFDSHLVGKKHLANVKR 184
           RG K +R ++   +R     +P+ V   PL+C +CN  C+++ VFD HLVGKKH + +KR
Sbjct: 259 RGRKKLRVSQAPQQR-----RPERVREQPLVCTICNAICDTRAVFDIHLVGKKHQSRLKR 313

Query: 185 FHGHRALYG---------------EAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQ 229
             G   L+G                 A + LY   F S+ +S++ Q        +  LA 
Sbjct: 314 SQGPDVLFGPLVGHIPPNQSAAHMTGAPEPLY-FGFKSMGASLVEQ--------EAYLAG 364

Query: 230 LLTYVL 235
            + +VL
Sbjct: 365 AMQHVL 370

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491021|ref|NP_001140748.1| uncharacterized protein LOC100272823 [Zea mays] gi|194700900|gb|ACF84534.1| unknown [Zea mays]

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/249 (29%), Positives = 110/249 (44%), Gaps = 62/249 (24%)

Query: 2   AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVS 61
           AWC++C V CN+ EILEQHKNGKRHKR+++   D+  L        ++  P+S    EV 
Sbjct: 79  AWCDICHVGCNSKEILEQHKNGKRHKRSVQRMQDMARLQGTTPAIADMGAPSSSQLAEVE 138

Query: 62  ------------------------QPEKVEECREKQPLESLPSQTLLGNASNETEMQKNT 97
                                    PE V        +  +P  +   N ++ T    + 
Sbjct: 139 GPSRSVHMVPPLGSTSLSGEHKDLAPENVGASVYGVQITEVPGSSSKQNKTHHTSTVGHG 198

Query: 98  VDSVKE---------PQRKSRD----QPDSRGC-----------------GSKRKMRG-G 126
           V++  E         P  + +D     P++ G                  GSKRK  G G
Sbjct: 199 VEAQVELHVAVQACQPSNEMKDGGEAPPNATGPSNAQLVEARMGVNGNNNGSKRKPTGAG 258

Query: 127 RGGKYMRTNEGGPRRPIEPPKPKGVI--PLICELCNVKCESQVVFDSHLVGKKHLANVKR 184
           RG K +R ++   +R     +P+ V   PL+C +CN  C+++ VFD HLVGKKH + +KR
Sbjct: 259 RGRKKLRVSQAPQQR-----RPERVREQPLVCTICNAICDTRAVFDIHLVGKKHQSRLKR 313

Query: 185 FHGHRALYG 193
             G   L+G
Sbjct: 314 SQGPDVLFG 322

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141481|ref|XP_002324100.1| predicted protein [Populus trichocarpa] gi|222867102|gb|EEF04233.1| predicted protein [Populus trichocarpa]

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 57/188 (30%)

Query: 2   AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVS 61
           A+CE+C+VDCN+ ++L+QHK GK+HK+N      L+ L    AG       ++GS   V 
Sbjct: 154 AYCEVCKVDCNSKDVLDQHKLGKKHKKN------LEKLQAAAAGCS----VSAGSNNPVI 203

Query: 62  QPEKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKR 121
            P++             PS++  GN     + +K   + +++   K R           R
Sbjct: 204 GPQEN------------PSKSENGNGQ---KSKKKAAEPLEDLDSKRR-----------R 237

Query: 122 KMRGGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLAN 181
            + GG     +R                     +C  CNV C S  VF+SHL G+KH A 
Sbjct: 238 ILEGGAAADAVR---------------------VCSFCNVVCNSDTVFNSHLAGQKHAAM 276

Query: 182 VKRFHGHR 189
           +K+  G R
Sbjct: 277 LKKLAGIR 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457301|ref|XP_002281421.1| PREDICTED: uncharacterized protein LOC100251937 [Vitis vinifera] gi|297733915|emb|CBI15162.3| unnamed protein product [Vitis vinifera]

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)

Query: 4   CELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQP 63
           CE+C +DCN+ ++LE+H +GK+H RNL+ H +   ++  I+ + +I M N+GS   V Q 
Sbjct: 132 CEVCNIDCNSKDVLEKHISGKKHNRNLQIHTN--QVSTTISTKDSIGM-NTGSL--VGQI 186

Query: 64  EKVEECREKQPLESLPSQTLLGNASNETEMQKNTVDSVKEPQRKSRDQPDSRGCGSKRKM 123
             +   R      +   Q+L+       E      DSV+           +  C S+   
Sbjct: 187 GSISHQRILGSAGAAAGQSLVAKRLKLVE-GGAVADSVRTCTI------CNVACNSQVVF 239

Query: 124 RGGRGGKYMRTNEG-GPRRPI-----------EPPKPKGVIPLICELCNVKCESQVVFDS 171
           +    GK      G  P+  +            P KPK V    CE+C + C S  VF  
Sbjct: 240 QKHLTGKKHAAQVGLRPQHLVVQPHSNGIWSKAPKKPKFVQSAWCEVCKINCNSSDVFTK 299

Query: 172 HLVGKKHLANVKRF 185
           H++GKKHL N+++ 
Sbjct: 300 HILGKKHLKNLEKL 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501728|gb|AFK38930.1| unknown [Medicago truncatula]

 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 60/113 (53%), Gaps = 14/113 (12%)

Query: 187 GHRALYGEAALQSLYPASFNSLSSSVITQVQQGVNDPQVVLAQLLTYVLSQAQAQAQAPG 246
           G +AL G A LQ+LYP   N+L++++  QVQQG NDPQV+LAQLL   LSQAQ       
Sbjct: 39  GPQALPGAAGLQALYPPDINALATAINAQVQQGDNDPQVLLAQLLVNALSQAQGSTT--- 95

Query: 247 LLAEQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMATTEEGSKN 299
             A     LAAQ P      APA   GS  + Q     +TQ S    + G  N
Sbjct: 96  --AAPNGTLAAQTP------APASVAGSGNDPQL---VQTQVSEVAADVGVGN 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009596001 SubName- Full=Chromosome chr2 scaffold_241, whole genome shotgun sequence; (446 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	4e-07
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	2e-06
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	2e-04
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	3e-04
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	0.003

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 154 LICELCNVKCESQVVFDSHLVGKKH 178
             CELCNV   S+    SHL GKKH
Sbjct: 1   FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 156 CELCNVKCESQVVFDSHLVGKKHLANVKRF 185
           C+LCNV    ++  ++HL GKKH  NVK+ 
Sbjct: 6   CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 3  WCELCRVDCNTLEILEQHKNGKRH 26
          +CELC V   +   L+ H  GK+H
Sbjct: 2  YCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 3  WCELCRVDCNTLEILEQHKNGKRHKRNLR 31
          +C+LC V       +E H  GK+HK+N++
Sbjct: 5  YCKLCNVTFTDEISVEAHLKGKKHKKNVK 33

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 156 CELCNVKCESQVVFDSHLVGKKH 178
           C  C+   +S+   ++HL  KKH
Sbjct: 4   CVACDKYFKSENALENHLKSKKH 26

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.51
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.48
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.45
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.26
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.03
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	97.94
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.92
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.35
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.33
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.04
PF11931	196	DUF3449: Domain of unknown function (DUF3449); Int	96.85
KOG4727	193	consensus U1-like Zn-finger protein [General funct	96.44
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	95.7
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	95.63
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	95.57
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	95.37
PLN02748	468	tRNA dimethylallyltransferase	95.29
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	94.3
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.25
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	94.08
KOG2636	497	consensus Splicing factor 3a, subunit 3 [RNA proce	94.03
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	94.01
KOG3032	264	consensus Uncharacterized conserved protein [Funct	93.56
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	93.32
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	93.04
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	92.96
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	92.78
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	92.5
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	92.46
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	92.22
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	91.93
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	91.84
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	91.61
KOG3032	264	consensus Uncharacterized conserved protein [Funct	91.39
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	91.38
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	91.15
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	91.1
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	90.91
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	90.36
smart00355	26	ZnF_C2H2 zinc finger.	89.31
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	88.97
KOG4722	672	consensus Zn-finger protein [General function pred	88.74
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	88.39
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	88.14
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	87.14
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	86.6
PF14968	336	CCDC84: Coiled coil protein 84	84.97
smart00355	26	ZnF_C2H2 zinc finger.	84.47
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	83.62

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.51  E-value=9.5e-08  Score=64.58  Aligned_cols=33  Identities=42%  Similarity=0.767  Sum_probs=30.9

Q ss_pred             CceecccCcccccCHHHHHHhhchhhHHHhhhh
Q 015675          152 IPLICELCNVKCESQVVFDSHLVGKKHLANVKR  184 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~  184 (403)
                      ..|+|++||+.|++...+.+|++|+||..++++
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            369999999999999999999999999999975

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.48  E-value=1e-07  Score=64.42  Aligned_cols=31  Identities=35%  Similarity=0.740  Sum_probs=29.5

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRT   32 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~   32 (403)
                      ++|++|+++|++...+.+|+.||+|++++++
T Consensus         4 ~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        4 FYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             eEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            6899999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.45  E-value=1.2e-07  Score=60.29  Aligned_cols=25  Identities=36%  Similarity=0.731  Sum_probs=24.5

Q ss_pred             eecccCcccccCHHHHHHhhchhhH
Q 015675          154 LICELCNVKCESQVVFDSHLVGKKH  178 (403)
Q Consensus       154 ~~CeICNV~cnSe~~y~sHL~GKKH  178 (403)
                      |+|++|++.|+++.+|.+|++|+||
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7999999999999999999999999

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.26  E-value=4.6e-07  Score=57.57  Aligned_cols=25  Identities=28%  Similarity=0.679  Sum_probs=24.2

Q ss_pred             cccccCccccCCHHHHHHHhchhHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRH   26 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKH   26 (403)
                      ++|.+|++.|+++..|++|++||+|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            5899999999999999999999999

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.03  E-value=2.4e-06  Score=55.92  Aligned_cols=27  Identities=26%  Similarity=0.545  Sum_probs=25.2

Q ss_pred             ceecccCcccccCHHHHHHhhchhhHH
Q 015675          153 PLICELCNVKCESQVVFDSHLVGKKHL  179 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~GKKHq  179 (403)
                      .|+|.+|++.|+++.+|.+|++|++|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            489999999999999999999999995

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=97.94  E-value=6.2e-06  Score=83.95  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=32.9

Q ss_pred             CCceecccC-cccccCHHHHHHhhchhhHHHhhhhh
Q 015675          151 VIPLICELC-NVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       151 ~~~~~CeIC-NV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      ..-|.|+|| |.++++...|..|+.-.+|...|+++
T Consensus       372 d~ef~CEICgNyvy~GR~~FdrHF~E~rHiygl~cl  407 (470)
T COG5188         372 DIEFECEICGNYVYYGRDRFDRHFEEDRHIYGLECL  407 (470)
T ss_pred             CcceeeeecccccccchHHHHhhhhhhhhhhheeec
Confidence            357999999 79999999999999999999999998

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.92  E-value=5.1e-06  Score=54.41  Aligned_cols=26  Identities=31%  Similarity=0.617  Sum_probs=25.3

Q ss_pred             cccccCccccCCHHHHHHHhchhHHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHK   27 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHk   27 (403)
                      ++|.+|+..|+++..|++|+.||+||
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            69999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.35  E-value=0.00017  Score=51.84  Aligned_cols=31  Identities=29%  Similarity=0.673  Sum_probs=20.9

Q ss_pred             cccccCcccc--CCHHHHHHHhchhHHHHHHHH
Q 015675            2 AWCELCRVDC--NTLEILEQHKNGKRHKRNLRT   32 (403)
Q Consensus         2 ~~C~LCqV~c--nS~~vl~~Hl~GKKHkknl~~   32 (403)
                      .||+.|++++  +++.+=.+|..|++|+.|++.
T Consensus         4 yyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    4 YYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             eecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            6999999999  677888999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.33  E-value=0.00013  Score=68.22  Aligned_cols=35  Identities=26%  Similarity=0.487  Sum_probs=32.1

Q ss_pred             CCCceecccCcccccCHHHHHHhhchhhHHHhhhh
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKR  184 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~  184 (403)
                      ..+.|+|.|||-.+....+|..|+|||||+.+|--
T Consensus        72 q~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgm  106 (193)
T KOG4727|consen   72 QKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGM  106 (193)
T ss_pred             ccCceeeeecceeehhhHHHHHHhccHHHHHHHhh
Confidence            45789999999999999999999999999999843

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.04  E-value=0.00051  Score=49.39  Aligned_cols=32  Identities=34%  Similarity=0.526  Sum_probs=21.1

Q ss_pred             ceecccCcccc--cCHHHHHHhhchhhHHHhhhh
Q 015675          153 PLICELCNVKC--ESQVVFDSHLVGKKHLANVKR  184 (403)
Q Consensus       153 ~~~CeICNV~c--nSe~~y~sHL~GKKHqkkLK~  184 (403)
                      .|+|+.|++.+  ++...-..|..|+||+.++++
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            59999999999  566777999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised

Probab=96.85  E-value=0.00027  Score=66.84  Aligned_cols=34  Identities=21%  Similarity=0.543  Sum_probs=0.0

Q ss_pred             CceecccC-cccccCHHHHHHhhchhhHHHhhhhh
Q 015675          152 IPLICELC-NVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       152 ~~~~CeIC-NV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      ..|.|+|| |.+|.+..+|..||+..||+..||+|
T Consensus       100 ~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcL  134 (196)
T PF11931_consen  100 VEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCL  134 (196)
T ss_dssp             -----------------------------------
T ss_pred             CeeeeEeCCCcceecHHHHHHhcChhHHHccChhc
Confidence            47999999 99999999999999999999999999

It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=96.44  E-value=0.0016  Score=61.25  Aligned_cols=33  Identities=30%  Similarity=0.578  Sum_probs=30.3

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHhh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHA   34 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~   34 (403)
                      +||.||+-.|--...|..|++||+|++|+.-+-
T Consensus        76 yyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm  108 (193)
T KOG4727|consen   76 YYCDVCDCVVKDSINFLDHINGKKHQRNLGMSM  108 (193)
T ss_pred             eeeeecceeehhhHHHHHHhccHHHHHHHhhhh
Confidence            799999999999999999999999999987653

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=95.70  E-value=0.0069  Score=54.18  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=35.5

Q ss_pred             CCCceecccCcccccCHHHHHHhhchhhHHHhhhhhc
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  186 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~  186 (403)
                      +.+.|+|-.|...|-++.+|..|+.+|.|.++||.+.
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~   90 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR   90 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence            6789999999999999999999999999999999996

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=95.63  E-value=0.0063  Score=54.47  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=33.2

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHhhhh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL   36 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~~   36 (403)
                      +||-.|.--|.+..+|..|+.+|.||++|..|++.
T Consensus        58 fyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~   92 (129)
T KOG3408|consen   58 FYCIECARYFIDAKALKTHFKTKVHKRRVKELREV   92 (129)
T ss_pred             eehhhhhhhhcchHHHHHHHhccHHHHHHHhcccC
Confidence            79999999999999999999999999999999864

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.57  E-value=0.0079  Score=63.48  Aligned_cols=34  Identities=26%  Similarity=0.579  Sum_probs=32.4

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHhhh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD   35 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~   35 (403)
                      +||.+|+.+|-|.-++..|.+.|+|++||+.|..
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrq  326 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQ  326 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999963

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=95.37  E-value=0.0079  Score=57.55  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=33.7

Q ss_pred             CCCCceecccCcccccCHHHHHHhhchhhHHHhhhhh
Q 015675          149 KGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       149 ~~~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      .+.++|.|.+|+-.-+++..|..|.+||||+.+|-+.
T Consensus        49 Nh~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarr   85 (222)
T KOG0227|consen   49 NHLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARR   85 (222)
T ss_pred             ccCcceeehhhhhhhcchhhhhhhhccchhhHHHHHH
Confidence            3678999999999999999999999999999998665

>PLN02748 tRNA dimethylallyltransferase

Probab=95.29  E-value=0.012  Score=61.93  Aligned_cols=35  Identities=23%  Similarity=0.500  Sum_probs=32.2

Q ss_pred             CceecccCcc-cccCHHHHHHhhchhhHHHhhhhhc
Q 015675          152 IPLICELCNV-KCESQVVFDSHLVGKKHLANVKRFH  186 (403)
Q Consensus       152 ~~~~CeICNV-~cnSe~~y~sHL~GKKHqkkLK~l~  186 (403)
                      ..|.|++|+. .+.++...+.|++|++|.+++|...
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~  452 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLK  452 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHH
Confidence            5788999997 8999999999999999999998774

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=94.30  E-value=0.024  Score=57.31  Aligned_cols=32  Identities=28%  Similarity=0.666  Sum_probs=28.3

Q ss_pred             cccccCcccc-CCHHHHHHHhchhHHHHHHHHh
Q 015675            2 AWCELCRVDC-NTLEILEQHKNGKRHKRNLRTH   33 (403)
Q Consensus         2 ~~C~LCqV~c-nS~~vl~~Hl~GKKHkknl~~L   33 (403)
                      .||.+|++|+ +++..-+.|-+||||+.||.+.
T Consensus        11 kfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr   43 (336)
T KOG0150|consen   11 KFCDYCKIWIKDNPASVRFHERGKRHKENVAKR   43 (336)
T ss_pred             hhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence            5899999998 5778888999999999999764

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.25  E-value=0.037  Score=33.41  Aligned_cols=21  Identities=19%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             eecccCcccccCHHHHHHhhc
Q 015675          154 LICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       154 ~~CeICNV~cnSe~~y~sHL~  174 (403)
                      |.|++|+..|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            789999999999999999985

...

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=94.08  E-value=0.032  Score=52.00  Aligned_cols=32  Identities=25%  Similarity=0.665  Sum_probs=27.8

Q ss_pred             cccccCccc--cCCHHHHHHHhchhHHHHHHHHh
Q 015675            2 AWCELCRVD--CNTLEILEQHKNGKRHKRNLRTH   33 (403)
Q Consensus         2 ~~C~LCqV~--cnS~~vl~~Hl~GKKHkknl~~L   33 (403)
                      +||+.|+..  =+|.+|=.+|+.|+||++|++--
T Consensus         4 YyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~Y   37 (165)
T KOG3454|consen    4 YYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDY   37 (165)
T ss_pred             chhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHH
Confidence            689999954  46999999999999999998753

>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=94.03  E-value=0.024  Score=59.71  Aligned_cols=35  Identities=26%  Similarity=0.509  Sum_probs=33.1

Q ss_pred             CCceecccC-cccccCHHHHHHhhchhhHHHhhhhh
Q 015675          151 VIPLICELC-NVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       151 ~~~~~CeIC-NV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      ...|.|+|| |-++++...|+.|++-++|+..||++
T Consensus       399 ~~ey~CEICGNy~Y~GrkaF~RHF~EwRH~hGmrCL  434 (497)
T KOG2636|consen  399 DIEYNCEICGNYVYKGRKAFDRHFNEWRHAHGMRCL  434 (497)
T ss_pred             CcccceeeccCccccCcHHHHHHhHHHHHhhcceec
Confidence            357999999 79999999999999999999999998

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=94.01  E-value=0.024  Score=43.34  Aligned_cols=25  Identities=36%  Similarity=0.700  Sum_probs=22.5

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRN   29 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkkn   29 (403)
                      .||+.|.+.|.   .|..|+.+++|++=
T Consensus         6 GYCE~Cr~kfd---~l~~Hi~s~~Hr~F   30 (49)
T smart00586        6 GYCENCREKYD---DLETHLLSEKHRRF   30 (49)
T ss_pred             cccccHhHHHh---hHHHHhccHHHHHH
Confidence            59999999997   78999999999973

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.56  E-value=0.14  Score=50.34  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=31.3

Q ss_pred             CcccccCccccCCHHHHHHHhchhHHHHHHHHhhh
Q 015675            1 MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD   35 (403)
Q Consensus         1 ~~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~   35 (403)
                      .+.|.||++-.- +.....|.+||+|+-++..|..
T Consensus        35 ql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs   68 (264)
T KOG3032|consen   35 QLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS   68 (264)
T ss_pred             CeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence            367999999999 9999999999999999999973

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.32  E-value=0.07  Score=33.01  Aligned_cols=22  Identities=18%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             eecccCcccccCHHHHHHhhch
Q 015675          154 LICELCNVKCESQVVFDSHLVG  175 (403)
Q Consensus       154 ~~CeICNV~cnSe~~y~sHL~G  175 (403)
                      |.|.+|+..|.+...|..|+.-
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            7899999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.04  E-value=0.06  Score=57.08  Aligned_cols=33  Identities=33%  Similarity=0.550  Sum_probs=31.8

Q ss_pred             eecccCcccccCHHHHHHhhchhhHHHhhhhhc
Q 015675          154 LICELCNVKCESQVVFDSHLVGKKHLANVKRFH  186 (403)
Q Consensus       154 ~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~  186 (403)
                      ++|-+||.+|.|+.++.-|-+.|||..+|..+-
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLr  325 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELR  325 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998884

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.96  E-value=0.059  Score=41.13  Aligned_cols=26  Identities=35%  Similarity=0.769  Sum_probs=22.9

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNL   30 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl   30 (403)
                      .||+.|.+.|.   .|..|+.+++|++=.
T Consensus         6 GYCE~C~~ky~---~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    6 GYCENCRVKYD---DLEEHIQSEKHRKFA   31 (49)
T ss_pred             ccCccccchhh---hHHHHhCCHHHHHHH
Confidence            59999999998   599999999999743

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=92.78  E-value=0.1  Score=54.11  Aligned_cols=35  Identities=31%  Similarity=0.555  Sum_probs=32.1

Q ss_pred             CceecccCcccccCHHHHHHhhchhhHHHhhhhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  186 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~  186 (403)
                      ..++|++||..+.|...+..|+..+||..++.++.
T Consensus        67 ~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~  101 (390)
T KOG2785|consen   67 SVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQ  101 (390)
T ss_pred             cceehHHhhccccChhhHHHHHHHhhcchhhhhhh
Confidence            46899999999999999999999999999997763

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=92.50  E-value=0.045  Score=60.42  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=30.4

Q ss_pred             eecccCcccccCHHHHHHhhchhhHHHhhhhh
Q 015675          154 LICELCNVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       154 ~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      |+|+.|.++|++..-|..|+.+.+|.+..|..
T Consensus       236 l~cEksi~tcs~pd~~g~alRrv~ec~~skL~  267 (816)
T KOG3792|consen  236 LHCEKSIVTCSGPDAYGAALRRVKECKVSKLH  267 (816)
T ss_pred             HHHHHhhccccCccchHHHHHHHHHhhhhccc
Confidence            59999999999999999999999999998876

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=92.46  E-value=0.1  Score=33.42  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.+...|..|+.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCCccCCccCChhHHHHHhH
Confidence            4899999999999999999984

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=92.22  E-value=0.084  Score=50.50  Aligned_cols=36  Identities=31%  Similarity=0.464  Sum_probs=32.6

Q ss_pred             CCCceecccCcccccCHHHHHHhhchhhHHHhhhhh
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      +.+.|.|.+|+-.-.++..|..|..||||+.++-+.
T Consensus        50 h~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          50 HTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             CCCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence            567999999999999999999999999999887554

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=91.93  E-value=0.097  Score=41.03  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=26.3

Q ss_pred             ceecccCcccccCHHHHHHhhchhhHHHhhh
Q 015675          153 PLICELCNVKCESQVVFDSHLVGKKHLANVK  183 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK  183 (403)
                      .|.|.+|+..|.+...|..||+.+.|.+...
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            5899999999999999999999999988653

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=91.84  E-value=0.092  Score=50.47  Aligned_cols=35  Identities=31%  Similarity=0.423  Sum_probs=31.7

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHhhhh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL   36 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~~   36 (403)
                      +-|.||.---+++..+..|..||||+.||.+-...
T Consensus        54 yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa~   88 (222)
T KOG0227|consen   54 YECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAK   88 (222)
T ss_pred             eeehhhhhhhcchhhhhhhhccchhhHHHHHHHHH
Confidence            46999999999999999999999999999887553

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=91.61  E-value=0.084  Score=40.45  Aligned_cols=30  Identities=30%  Similarity=0.538  Sum_probs=25.0

Q ss_pred             ceecccCcccccCHHHHHHhhchhhHHHhhhhh
Q 015675          153 PLICELCNVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      +-+||+|.+.|.   .|..|+.++||++=.+..
T Consensus         5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~~~   34 (49)
T smart00586        5 PGYCENCREKYD---DLETHLLSEKHRRFAENN   34 (49)
T ss_pred             CcccccHhHHHh---hHHHHhccHHHHHHHcCc
Confidence            349999999987   799999999998766443

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.39  E-value=0.21  Score=49.23  Aligned_cols=35  Identities=29%  Similarity=0.601  Sum_probs=31.7

Q ss_pred             CCceecccCcccccCHHHHHHhhchhhHHHhhhhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  186 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~  186 (403)
                      .+.+.|-+||+-.. +.....|.+||||...+-.+.
T Consensus        33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence            46899999999999 999999999999998887764

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=91.38  E-value=0.12  Score=49.50  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=32.6

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHhhhhh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQ   37 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~~~   37 (403)
                      +.|.||+-.--+.+.+..|..||||+.|+.+..+.+
T Consensus        54 ~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~ek   89 (222)
T COG5246          54 YVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEEK   89 (222)
T ss_pred             EEeeeeccccccHHHHHHhhccchhhhhHHHHHHHh
Confidence            579999999999999999999999999999886643

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=91.15  E-value=0.2  Score=55.48  Aligned_cols=35  Identities=26%  Similarity=0.567  Sum_probs=31.0

Q ss_pred             CCCceecccCcccccCHHHHHHhhchhhHHHhhhh
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKR  184 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~  184 (403)
                      ....|+|.+|+-.|+....-..|++|+||.-..|+
T Consensus       356 K~~~f~cKlcdckf~d~nak~mhl~grRhrLQYk~  390 (816)
T KOG3792|consen  356 KLLRFHCKLCDCKFNDPNAKEMHLKGRRHRLQYKQ  390 (816)
T ss_pred             chHhhhhhhhcCCCCCcchHHhhhhcccccceecc
Confidence            35689999999999999999999999999777663

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.10  E-value=0.13  Score=39.32  Aligned_cols=29  Identities=31%  Similarity=0.589  Sum_probs=24.6

Q ss_pred             ceecccCcccccCHHHHHHhhchhhHHHhhhh
Q 015675          153 PLICELCNVKCESQVVFDSHLVGKKHLANVKR  184 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~  184 (403)
                      +-+||.|.+.|.   .|..|+.+.+|++=+..
T Consensus         5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA~~   33 (49)
T PF07535_consen    5 PGYCENCRVKYD---DLEEHIQSEKHRKFAEN   33 (49)
T ss_pred             CccCccccchhh---hHHHHhCCHHHHHHHcC
Confidence            349999999998   69999999999876643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=90.91  E-value=0.13  Score=47.96  Aligned_cols=33  Identities=33%  Similarity=0.575  Sum_probs=28.2

Q ss_pred             ceecccCccccc--CHHHHHHhhchhhHHHhhhhh
Q 015675          153 PLICELCNVKCE--SQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       153 ~~~CeICNV~cn--Se~~y~sHL~GKKHqkkLK~l  185 (403)
                      .|+|+-|+...+  |-.+=..|..|+||.+++|-.
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~Y   37 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDY   37 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHH
Confidence            599999996654  678899999999999998754

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=90.36  E-value=0.13  Score=45.56  Aligned_cols=35  Identities=31%  Similarity=0.487  Sum_probs=33.2

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHhhhh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL   36 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~~   36 (403)
                      .||--|..-|.+..+|..|+.||-|++.+..|++.
T Consensus        56 hYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev   90 (126)
T COG5112          56 HYCIECARYFITEKALMEHKKGKVHKRRAKELREV   90 (126)
T ss_pred             eeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence            59999999999999999999999999999999885

>smart00355 ZnF_C2H2 zinc finger

Probab=89.31  E-value=0.29  Score=29.45  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.8

Q ss_pred             eecccCcccccCHHHHHHhhchhhH
Q 015675          154 LICELCNVKCESQVVFDSHLVGKKH  178 (403)
Q Consensus       154 ~~CeICNV~cnSe~~y~sHL~GKKH  178 (403)
                      |.|..|+..|.+...|..|+.  .|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~--~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR--TH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH--Hh
Confidence            579999999999999999987  55

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=88.97  E-value=0.16  Score=39.80  Aligned_cols=30  Identities=27%  Similarity=0.493  Sum_probs=25.3

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLR   31 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~   31 (403)
                      +.|.+|+..|.+...|..|+..+.|++...
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             CCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            579999999999999999999999997544

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=88.74  E-value=0.22  Score=52.85  Aligned_cols=35  Identities=34%  Similarity=0.533  Sum_probs=32.0

Q ss_pred             CCceecccCcccccCHHHHHHhhchhhHHHhhhhh
Q 015675          151 VIPLICELCNVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      .+...|.+|||...|++-|-+|..|+||+..|+.+
T Consensus       491 erkkqcslcnvlissevylfshvkgrkhqqal~e~  525 (672)
T KOG4722|consen  491 ERKKQCSLCNVLISSEVYLFSHVKGRKHQQALNEL  525 (672)
T ss_pred             HhhhccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence            34678999999999999999999999999999876

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=88.39  E-value=0.3  Score=31.26  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             CcccccCccccCCHHHHHHHhc
Q 015675            1 MAWCELCRVDCNTLEILEQHKN   22 (403)
Q Consensus         1 ~~~C~LCqV~cnS~~vl~~Hl~   22 (403)
                      ++.|.+|+..|.+...|..|..
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC
T ss_pred             CCCCCccCCccCChhHHHHHhH
Confidence            3679999999999999999983

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=88.14  E-value=0.32  Score=29.20  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=17.1

Q ss_pred             cccccCccccCCHHHHHHHhc
Q 015675            2 AWCELCRVDCNTLEILEQHKN   22 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~   22 (403)
                      +.|.+|...|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            369999999999999999974

...

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=87.14  E-value=0.43  Score=42.45  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             CCCceecccCcccccCHHHHHHhhchhhHHHhhhhhcC
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  187 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~g  187 (403)
                      +.+.++|=-|...|-++.+|-.|..|+-|..++|.+-+
T Consensus        52 GlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe   89 (126)
T COG5112          52 GLGQHYCIECARYFITEKALMEHKKGKVHKRRAKELRE   89 (126)
T ss_pred             CCceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence            66789999999999999999999999999999999844

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=86.60  E-value=0.36  Score=50.20  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=30.2

Q ss_pred             ceecccCcccccCHHHHHHhhchhhHHHhhhhh
Q 015675          153 PLICELCNVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      .++|..|...|....+|..|+.||.|-+..+.-
T Consensus       238 ~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~  270 (470)
T COG5188         238 KVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGK  270 (470)
T ss_pred             ceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhh
Confidence            689999999999999999999999998887554

>PF14968 CCDC84: Coiled coil protein 84

Probab=84.97  E-value=0.17  Score=51.70  Aligned_cols=41  Identities=24%  Similarity=0.398  Sum_probs=32.1

Q ss_pred             CCCCCCCCceecccCcccccCH------HHHHHhhchhhHHHhhhhh
Q 015675          145 PPKPKGVIPLICELCNVKCESQ------VVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       145 pp~~~~~~~~~CeICNV~cnSe------~~y~sHL~GKKHqkkLK~l  185 (403)
                      .+.......|||-.|+....--      ..+..||.+.-|+++|+.+
T Consensus        50 ~~~~~~~~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F   96 (336)
T PF14968_consen   50 RYDPEHRNRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKF   96 (336)
T ss_pred             CCCccccceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHH
Confidence            3445567899999997666533      3567899999999999998

>smart00355 ZnF_C2H2 zinc finger

Probab=84.47  E-value=0.91  Score=27.23  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=19.3

Q ss_pred             cccccCccccCCHHHHHHHhc
Q 015675            2 AWCELCRVDCNTLEILEQHKN   22 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~   22 (403)
                      +.|..|...|.+...|..|..
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            369999999999999999986

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.62  E-value=0.76  Score=28.31  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             cccccCccccCCHHHHHHHhc
Q 015675            2 AWCELCRVDCNTLEILEQHKN   22 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~   22 (403)
                      +.|.+|...|.+...|..|..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            369999999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	99.61
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.91
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.5
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.39
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.14
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.09
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	95.68
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	95.65
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.58
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	94.49
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	92.39
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.79
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.77
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	91.57
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	91.56
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	91.51
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	91.45
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	91.17
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.16
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.05
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	91.05
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	90.87
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.79
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.74
1ard_A	29	Yeast transcription factor ADR1; transcription reg	90.61
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	90.42
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.99
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	89.89
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.88
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	89.83
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	89.78
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	89.54
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	89.32
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	89.03
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	88.83
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	88.82
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	88.74
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	88.68
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.56
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.46
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	88.4
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.39
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.39
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.38
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.37
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	88.35
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	88.28
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.18
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.18
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.18
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.07
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.05
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	88.05
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.0
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.0
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.95
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.88
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.86
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	87.83
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.82
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.81
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	87.63
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	87.75
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.71
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	87.7
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.68
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.62
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.62
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	87.61
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.6
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.5
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.49
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	87.47
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.45
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.42
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.41
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.41
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.41
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.39
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.36
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	87.34
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.31
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.24
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.1
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	87.09
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.08
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.04
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	87.03
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.02
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.01
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.99
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	86.94
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.93
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.91
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	86.9
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	86.87
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	86.79
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	86.73
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	86.72
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.71
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.7
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.68
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.63
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.62
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	86.61
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.56
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	86.52
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.5
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.47
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.44
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.39
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.38
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.35
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.35
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	86.32
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.3
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	86.3
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.29
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.25
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	86.24
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.23
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.14
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.11
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	86.1
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.06
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	86.04
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.04
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.02
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.0
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	85.99
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	86.06
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.8
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	85.78
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	85.77
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.77
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.56
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	85.43
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	85.15
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	85.06
1paa_A	30	Yeast transcription factor ADR1; transcription reg	84.92
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	84.69
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	84.62
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.53
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.49
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	84.33
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	84.29
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	84.15
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	83.89
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	83.64
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	83.58
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	83.48
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	83.47
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	83.45
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	83.38
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	83.38
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	83.28
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	83.2
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	83.2
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	83.14
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	83.11
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	82.9
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	82.5
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	82.45
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	82.23
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	81.82
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	81.8
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	81.55
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	81.55
1ard_A	29	Yeast transcription factor ADR1; transcription reg	81.35
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	81.31
2epa_A	72	Krueppel-like factor 10; transforming growth facto	81.31
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	81.25
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	80.91
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	80.87
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	80.48
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	80.03

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=99.61  E-value=1.2e-15  Score=129.96  Aligned_cols=35  Identities=34%  Similarity=0.630  Sum_probs=32.6

Q ss_pred             CceecccCcccccCHHHHHHhhchhhHHHhhhhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  186 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~  186 (403)
                      ..|+|++||++|+|+.+|++|++||+|.++||+..
T Consensus        92 ~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           92 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            46899999999999999999999999999999863

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.91  E-value=3.9e-06  Score=71.26  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             CceecccCcccccCHHHHHHhhchhhHHHhhhhhcC
Q 015675          152 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  187 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~g  187 (403)
                      ..|+|.+|||.|+|+.++..|++|+||.++|+....
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            358999999999999999999999999999987643

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.50  E-value=6.3e-05  Score=65.19  Aligned_cols=37  Identities=19%  Similarity=0.254  Sum_probs=34.9

Q ss_pred             CCCceecccCcccccCHHHHHHhhchhhHHHhhhhhc
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  186 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~  186 (403)
                      +...|+|.+|+..|.+...|..|+++|+|.++|+.+.
T Consensus        47 GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~   83 (124)
T 1zr9_A           47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS   83 (124)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhc
Confidence            5678999999999999999999999999999999985

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.39  E-value=7.5e-05  Score=64.73  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=32.6

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHhhh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD   35 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~   35 (403)
                      +||.+|+..|.+...|..|+++|+|+++++.|..
T Consensus        51 fyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           51 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             SEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             eEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            7999999999999999999999999999999865

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.14  E-value=0.00023  Score=57.44  Aligned_cols=33  Identities=21%  Similarity=0.568  Sum_probs=29.9

Q ss_pred             cccccCcccc--CCHHHHHHHhchhHHHHHHHHhh
Q 015675            2 AWCELCRVDC--NTLEILEQHKNGKRHKRNLRTHA   34 (403)
Q Consensus         2 ~~C~LCqV~c--nS~~vl~~Hl~GKKHkknl~~L~   34 (403)
                      +||+.|++.+  +|.++-.+|++|+||+.|++..-
T Consensus         4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy   38 (77)
T 3cw1_L            4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (77)
T ss_pred             cccccCCceecCCCHHHHHHHHccHHHHHHHHHHH
Confidence            6899999999  78999999999999999988753

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.09  E-value=0.00026  Score=57.18  Aligned_cols=33  Identities=33%  Similarity=0.667  Sum_probs=30.1

Q ss_pred             ceecccCcccc--cCHHHHHHhhchhhHHHhhhhh
Q 015675          153 PLICELCNVKC--ESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       153 ~~~CeICNV~c--nSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      .|+|+-|++.+  .|..+...|.+|+||+.+++..
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            69999999999  5688899999999999999876

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.0037  Score=63.06  Aligned_cols=34  Identities=29%  Similarity=0.530  Sum_probs=30.7

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHhhh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD   35 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~   35 (403)
                      +||..|+..|.++.++..|+.||||+|++++...
T Consensus       293 l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k~  326 (402)
T 4dgw_A          293 IYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRN  326 (402)
T ss_dssp             ECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSHH
T ss_pred             eeehhhhhhhccccccHHHhcccccchhHHHHHH
Confidence            6999999999999999999999999998866433

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=95.65  E-value=0.0064  Score=46.54  Aligned_cols=36  Identities=28%  Similarity=0.631  Sum_probs=32.6

Q ss_pred             eecccCcccccCHHHHHHhhchhhHHHhhhhhcCCc
Q 015675          154 LICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHR  189 (403)
Q Consensus       154 ~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~g~~  189 (403)
                      -.|++|+|.|+....++.|+-.+.|..+||..-+.+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~~q   49 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQ   49 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCSS
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHHHHHhh
Confidence            389999999999999999999999999999875543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.58  E-value=0.012  Score=59.43  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=31.3

Q ss_pred             CceecccCcc------cccCHHHHHHhhchhhHHHhhhhh
Q 015675          152 IPLICELCNV------KCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       152 ~~~~CeICNV------~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      ..|.|++|+.      .+.++...+.|++|++|.++||+.
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~  398 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRN  398 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHH
Confidence            4689999998      899999999999999999999875

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=94.49  E-value=0.015  Score=58.62  Aligned_cols=33  Identities=36%  Similarity=0.647  Sum_probs=30.4

Q ss_pred             CceecccCcccccCHHHHHHhhchhhHHHhhhh
Q 015675          152 IPLICELCNVKCESQVVFDSHLVGKKHLANVKR  184 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~  184 (403)
                      ..+||..|+..|.++.+|..|+.||||.+.+.+
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHH
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHH
Confidence            479999999999999999999999999998754

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=92.39  E-value=0.056  Score=37.56  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.2

Q ss_pred             cccccCccccCCHHHHHHHhchhHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRH   26 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKH   26 (403)
                      +.|.+|.++|.+...|..|| .++|
T Consensus         6 FiCP~C~~~l~s~~~L~~Hy-e~~H   29 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHY-EAVH   29 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHH-HHHT
T ss_pred             cCCcHHHHHcCCHHHHHHHH-Hhcc
Confidence            67999999999999999999 4555

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=91.79  E-value=0.12  Score=31.43  Aligned_cols=23  Identities=30%  Similarity=0.532  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            47999999999999999999974

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.77  E-value=0.074  Score=37.65  Aligned_cols=21  Identities=24%  Similarity=0.591  Sum_probs=19.6

Q ss_pred             CcccccCccccCCHHHHHHHh
Q 015675            1 MAWCELCRVDCNTLEILEQHK   21 (403)
Q Consensus         1 ~~~C~LCqV~cnS~~vl~~Hl   21 (403)
                      +++|+.|+++|++...|..|+
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhh
Confidence            579999999999999999995

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.57  E-value=0.13  Score=29.92  Aligned_cols=23  Identities=26%  Similarity=0.586  Sum_probs=20.7

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHH
Confidence            36899999999999999999974

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.56  E-value=0.14  Score=29.80  Aligned_cols=23  Identities=17%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            36899999999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=91.51  E-value=0.11  Score=29.77  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.+...|..|+.
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGG
T ss_pred             CccCCCCCCcCCCHHHHHHHHH
Confidence            3789999999999999999974

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=91.45  E-value=0.15  Score=31.34  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=21.6

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHG
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH
Confidence            347999999999999999999974

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.17  E-value=0.14  Score=29.51  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.3

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            5899999999999999999974

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.16  E-value=0.16  Score=31.27  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHH
Confidence            347999999999999999999974

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.05  E-value=0.17  Score=31.38  Aligned_cols=24  Identities=25%  Similarity=0.546  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.+...|..|+.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHH
T ss_pred             CCCccCCCCCchhCCHHHHHHHHH
Confidence            357999999999999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.05  E-value=0.14  Score=30.03  Aligned_cols=23  Identities=30%  Similarity=0.743  Sum_probs=20.7

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            36999999999999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=90.87  E-value=0.18  Score=31.32  Aligned_cols=24  Identities=17%  Similarity=0.330  Sum_probs=21.4

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus         9 ~k~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A            9 IKPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CCCccCCCCCcccCcHHHHHHHHH
Confidence            347999999999999999999974

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.79  E-value=0.17  Score=31.29  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH
Confidence            347999999999999999999974

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.74  E-value=0.17  Score=31.14  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.+...|..|+.
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCCeecCcCCCCcCchHHHHHHHH
Confidence            357999999999999999999974

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=90.61  E-value=0.15  Score=29.49  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5899999999999999999974

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.42  E-value=0.19  Score=29.03  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            36899999999999999999974

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.99  E-value=0.21  Score=30.88  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHH
Confidence            347999999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=89.89  E-value=0.23  Score=31.45  Aligned_cols=23  Identities=17%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH
T ss_pred             CceECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.88  E-value=0.19  Score=31.19  Aligned_cols=23  Identities=17%  Similarity=0.449  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999975

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=89.83  E-value=0.15  Score=29.61  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=20.4

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999985

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=89.78  E-value=0.2  Score=35.46  Aligned_cols=22  Identities=14%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             CceecccCcccccCHHHHHHhh
Q 015675          152 IPLICELCNVKCESQVVFDSHL  173 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL  173 (403)
                      ..++|+.|+|.|++-.+|..|.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhh
Confidence            4689999999999999999995

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=89.54  E-value=0.23  Score=33.61  Aligned_cols=24  Identities=17%  Similarity=0.506  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CcCEECCCcCcccCCHHHHHHHhh
Confidence            357999999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.32  E-value=0.28  Score=31.96  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           11 KPYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             cCeECCCCCcccCchHHHHHHHh
Confidence            47999999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=89.03  E-value=0.3  Score=31.24  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A            9 NPYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccCCCcChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=88.83  E-value=0.31  Score=31.03  Aligned_cols=24  Identities=17%  Similarity=0.375  Sum_probs=21.4

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus         9 ~~~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A            9 ETPYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHhh
Confidence            347999999999999999999974

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.82  E-value=0.28  Score=31.23  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A            9 KPYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.74  E-value=0.35  Score=30.85  Aligned_cols=24  Identities=13%  Similarity=0.146  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGG
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHH
Confidence            347999999999999999999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.68  E-value=0.28  Score=31.45  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           10 KPYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CCEECCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999975

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.56  E-value=0.29  Score=32.23  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=21.6

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTT
T ss_pred             CcccCCCCCCcccCcHHHHHHHHH
Confidence            347999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.46  E-value=0.36  Score=31.40  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           11 KPYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCEECCCCChhhCChHHHHHHHH
Confidence            47999999999999999999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.40  E-value=0.33  Score=31.00  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=21.6

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|++|+..|.....|..|+.
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A            9 EKPYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             SCSEECTTTCCEESSHHHHHHHTH
T ss_pred             CCCEeCCCcChhhCCHHHHHHHHH
Confidence            347999999999999999999984

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.39  E-value=0.34  Score=31.68  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           11 KPYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.39  E-value=0.32  Score=31.76  Aligned_cols=23  Identities=17%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           11 KPYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999973

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.38  E-value=0.33  Score=31.19  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           11 KPYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHhHHHHHHH
Confidence            46999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.37  E-value=0.32  Score=31.78  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           11 NPFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=88.35  E-value=0.55  Score=35.58  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=20.4

Q ss_pred             CCCceecccCcccccCHHHHHHhhc
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ....|.|.+|+..|.+...|..|+.
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~   38 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHER   38 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHH
Confidence            3457889999999999999988874

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.28  E-value=0.35  Score=31.46  Aligned_cols=23  Identities=17%  Similarity=0.352  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           11 KPYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999974

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.18  E-value=0.3  Score=30.77  Aligned_cols=22  Identities=14%  Similarity=0.301  Sum_probs=20.2

Q ss_pred             CCceecccCcccccCHHHHHHh
Q 015675          151 VIPLICELCNVKCESQVVFDSH  172 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sH  172 (403)
                      ...|.|.+|+..|.....|..|
T Consensus         7 ~k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            7 GHLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             SCEEECSSSSCEEECHHHHHHH
T ss_pred             CcCeECCCCCcccCCHHHHHHH
Confidence            3479999999999999999999

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.18  E-value=0.35  Score=31.72  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yto_A           11 KPYKCSDCGKAFTRKSGLHIHQQ   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECcccCCccCCHhHHHHHHH
Confidence            47999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.18  E-value=0.37  Score=31.46  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           11 RHYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHh
Confidence            47999999999999999999974

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.07  E-value=0.4  Score=31.41  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           11 KHFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CCEECSSSCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.05  E-value=0.36  Score=31.45  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytf_A           11 KPFECSECQKAFNTKSNLIVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.05  E-value=0.33  Score=31.68  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQR   33 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHT
T ss_pred             CcCccCCCCCCccCChHHHHHHHH
Confidence            357999999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.00  E-value=0.32  Score=31.28  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           11 KPYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSSCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCCccCCHHHHHHHhh
Confidence            46999999999999999999984

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.00  E-value=0.35  Score=31.48  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eor_A           11 KPYNCEECGKAFIHDSQLQEHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             cCccCCCCCCCcCCHHHHHHHHH
Confidence            47999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.95  E-value=0.34  Score=31.77  Aligned_cols=23  Identities=13%  Similarity=0.244  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCEECCccCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=87.88  E-value=0.37  Score=31.60  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emj_A           11 KPFECAECGKSFSISSQLATHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.86  E-value=0.28  Score=30.50  Aligned_cols=23  Identities=13%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             CceecccCcccccCH-HHHHHhhc
Q 015675          152 IPLICELCNVKCESQ-VVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe-~~y~sHL~  174 (403)
                      ..|.|.+|+..|... ..|..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHH
Confidence            479999999999999 99999974

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.83  E-value=0.43  Score=30.84  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           11 KRYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SSEECTTTCCEESCHHHHHHHGG
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999974

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.82  E-value=0.4  Score=31.29  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           11 KPYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeeCCCcCCccCCHHHHHHHHH
Confidence            47999999999999999999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.81  E-value=0.41  Score=31.14  Aligned_cols=23  Identities=17%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eme_A           11 KPYVCDYCGKAFGLSAELVRHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            47999999999999999999984

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=87.63  E-value=0.1  Score=30.08  Aligned_cols=22  Identities=23%  Similarity=0.623  Sum_probs=20.1

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|++|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            5899999999999999999974

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=87.75  E-value=0.27  Score=30.41  Aligned_cols=22  Identities=14%  Similarity=0.366  Sum_probs=20.3

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            5899999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.71  E-value=0.37  Score=31.47  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           11 KPYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.70  E-value=0.33  Score=30.90  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        10 k~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           10 KPYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CSBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CCeeCCCccchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.68  E-value=0.38  Score=31.30  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eow_A           11 KPYKCNECGKAFRARSSLAIHQA   33 (46)
T ss_dssp             CCEECTTSCCEESSHHHHHHHHH
T ss_pred             CCeeccccCChhcCHHHHHHHHH
Confidence            46999999999999999999974

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.62  E-value=0.33  Score=31.30  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           11 NPYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             CSCEETTTTEECSSHHHHHHHHT
T ss_pred             cCeeCCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.62  E-value=0.41  Score=31.37  Aligned_cols=23  Identities=13%  Similarity=0.164  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytp_A           11 RHYECSECGKAFARKSTLIMHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCcccCCHHHHHHHHH
Confidence            47999999999999999999975

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=87.61  E-value=0.38  Score=34.58  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             CCCceecccCcccccCHHHHHHhhc
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ....|.|.+|+..|.+...|..|+.
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~   38 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKT   38 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHH
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHH
Confidence            4557889999999999999988874

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.60  E-value=0.41  Score=31.34  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           11 KPFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SSBCCSSSCCCBSSHHHHHHHGG
T ss_pred             cCCCCCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.50  E-value=0.42  Score=31.29  Aligned_cols=23  Identities=13%  Similarity=0.215  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           11 KSHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCeECCcCCCccCCHHHHHHHHH
Confidence            47999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.49  E-value=0.41  Score=31.37  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=21.4

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em4_A           10 QRPYECIECGKAFKTKSSLICHRR   33 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHH
Confidence            347999999999999999999974

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.47  E-value=0.39  Score=31.34  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           11 KPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCeECCCCCceeCCHHHHHHHHH
Confidence            47999999999999999999975

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.45  E-value=0.41  Score=31.23  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           11 NPYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCcHHHHHHHHH
Confidence            47999999999999999999974

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.42  E-value=0.4  Score=31.29  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           11 KPYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.41  E-value=0.35  Score=31.68  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           11 KPYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCCcCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.41  E-value=0.45  Score=31.03  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           11 KPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHGG
T ss_pred             cCccCCCccchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.41  E-value=0.37  Score=31.39  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           11 KPYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             CSSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999985

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.39  E-value=0.43  Score=31.17  Aligned_cols=24  Identities=17%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|++|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCCeeCcccCcccCChHHHHHHHH
Confidence            357999999999999999999974

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.36  E-value=0.44  Score=31.08  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.+...|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           10 EKPYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCCeECCCCCchhCChHHHHHHHh
Confidence            347999999999999999999975

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=87.34  E-value=0.46  Score=30.87  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           11 KPYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             CSEECSSSSCEESSHHHHHHHGG
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.31  E-value=0.38  Score=31.42  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           11 KPYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CCeECCcCChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.24  E-value=0.39  Score=31.27  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           11 KPYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CCccCCccChhhCCHHHHHHHHH
Confidence            46999999999999999999974

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.10  E-value=0.43  Score=31.17  Aligned_cols=23  Identities=17%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=87.09  E-value=0.62  Score=30.96  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=22.1

Q ss_pred             CCCceecccCcccccCHHHHHHhhc
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ....|.|.+|+..|.....|..|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~   33 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKL   33 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHH
Confidence            3457999999999999999999974

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.08  E-value=0.38  Score=31.54  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoz_A           11 KPYSCNVCGKAFVLSAHLNQHLR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHHH
T ss_pred             CCeECcccChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.04  E-value=0.32  Score=31.79  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en3_A           11 KPFQCKECGMNFSWSCSLFKHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCcccChhhCCHHHHHHHHH
Confidence            46999999999999999999983

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.03  E-value=0.43  Score=31.06  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           11 KPYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CSBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CCEECCccCchhCChHHHHHHhH
Confidence            47999999999999999999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.02  E-value=0.39  Score=31.35  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           11 KPYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CSSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.01  E-value=0.43  Score=31.27  Aligned_cols=23  Identities=13%  Similarity=0.345  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           11 KCYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.99  E-value=0.43  Score=31.12  Aligned_cols=23  Identities=26%  Similarity=0.509  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           11 KPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCeeCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.94  E-value=0.47  Score=30.97  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQL   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.93  E-value=0.37  Score=31.72  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=21.4

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHH
Confidence            347999999999999999999974

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.91  E-value=0.45  Score=30.75  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A            9 KPFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=86.90  E-value=0.25  Score=28.54  Aligned_cols=22  Identities=14%  Similarity=0.535  Sum_probs=20.1

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            4899999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.87  E-value=0.37  Score=31.34  Aligned_cols=23  Identities=17%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           11 KPYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHT
T ss_pred             CCeECCCCChhhCCHHHHHHHHH
Confidence            46999999999999999999974

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=86.79  E-value=0.13  Score=30.10  Aligned_cols=22  Identities=18%  Similarity=0.517  Sum_probs=20.2

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.....|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            6899999999999999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=86.73  E-value=0.45  Score=32.53  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        23 k~~~C~~C~k~f~~~~~L~~H~~   45 (54)
T 1yui_A           23 QPATCPICYAVIRQSRNLRRHLE   45 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=86.72  E-value=0.51  Score=30.88  Aligned_cols=24  Identities=21%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|++|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            347999999999999999999974

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.71  E-value=0.47  Score=31.06  Aligned_cols=23  Identities=26%  Similarity=0.560  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em2_A           11 KPFKCKECGKAFRQNIHLASHLR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEECCcCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.70  E-value=0.46  Score=30.91  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eop_A           11 KPHECRECGKSFSFNSQLIVHQR   33 (46)
T ss_dssp             CSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCeeCCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.68  E-value=0.36  Score=31.66  Aligned_cols=24  Identities=17%  Similarity=0.427  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHH
Confidence            347999999999999999999974

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.63  E-value=0.47  Score=30.97  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emh_A           11 RPYICTVCGKAFTDRSNLIKHQK   33 (46)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.62  E-value=0.46  Score=31.02  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytk_A           10 EKPYKCNECGKVFTQNSHLTNHWR   33 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCEeCCcCCCccCCHHHHHHHHH
Confidence            347999999999999999999974

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.61  E-value=0.45  Score=30.93  Aligned_cols=24  Identities=13%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|++|+..|.....|..|+.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~   31 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CCCEECCCCCCeeCChHHHHHHHH
Confidence            347999999999999999999974

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.56  E-value=0.49  Score=30.87  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             cCeECCCCCCeeCCHHHHHHHhh
Confidence            46999999999999999999974

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.52  E-value=0.51  Score=30.90  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCCeeCcccCchhCCHHHHHHHHH
Confidence            347999999999999999999975

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.50  E-value=0.42  Score=31.09  Aligned_cols=23  Identities=17%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           11 KPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCeECCCcChhhCCHHHHHHHHH
Confidence            46999999999999999999974

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.47  E-value=0.49  Score=30.85  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emp_A           11 KPYMCNECGKAFSVYSSLTTHQV   33 (46)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999974

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.44  E-value=0.49  Score=30.77  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           11 RPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCChhhCCHHHHHHHHH
Confidence            47999999999999999999974

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.39  E-value=0.48  Score=31.00  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|++|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMR   33 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCcCCCccChhhCChHHHHHHHH
Confidence            346999999999999999999975

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.38  E-value=0.47  Score=30.97  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           11 KPYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             CSEEETTTTEEESCHHHHHHHHT
T ss_pred             CCeECCCCCCccCCHHHHHHHHH
Confidence            47999999999999999999975

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=86.35  E-value=0.57  Score=30.45  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           11 KPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHGG
T ss_pred             cCeECCccccccCChHHHHHHHH
Confidence            47999999999999999999974

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=86.35  E-value=0.53  Score=30.69  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           11 KRYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHT
T ss_pred             cCcCCCCCcchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=86.32  E-value=0.24  Score=28.40  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.....|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            5889999999999999999974

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.30  E-value=0.51  Score=30.78  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytd_A           11 KPYKCSECGKAFHRHTHLNEHRR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             cCeECCCCCCeeCChHHHHHHHH
Confidence            47999999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.30  E-value=0.44  Score=30.91  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=20.9

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           11 TTSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.29  E-value=0.48  Score=31.04  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           11 RPYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCEEccccCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.25  E-value=0.52  Score=30.85  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQR   33 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeECcccCchhCCHHHHHHHHH
Confidence            347999999999999999999985

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=86.24  E-value=0.43  Score=32.21  Aligned_cols=23  Identities=17%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             CCceecccCcccccCHHHHHHhh
Q 015675          151 VIPLICELCNVKCESQVVFDSHL  173 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL  173 (403)
                      ..+|.|..|+..|.....|..|+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCcC
Confidence            45799999999999999999998

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.23  E-value=0.55  Score=30.51  Aligned_cols=23  Identities=13%  Similarity=0.176  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           11 KSHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCeECCCcCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.14  E-value=0.42  Score=31.18  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           11 KPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             cCeECCCCCcccCChhHHHHHhH
Confidence            46999999999999999999973

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.11  E-value=0.45  Score=31.03  Aligned_cols=23  Identities=17%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           11 KPFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCcCCCcCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.10  E-value=0.47  Score=30.86  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=20.9

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           11 KLYNCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CCCCBTTTTBCCSCHHHHHHHHH
T ss_pred             CCeECCCCCCccCchHHHHHHHH
Confidence            46999999999999999999974

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.06  E-value=0.41  Score=31.37  Aligned_cols=23  Identities=13%  Similarity=0.235  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoy_A           11 KCFKCNKCEKTFSCSKYLTQHER   33 (46)
T ss_dssp             CCEECSSSCCEESSSHHHHHHHT
T ss_pred             CCEECcCCCCcCCCHHHHHHHHH
Confidence            47999999999999999999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=86.04  E-value=0.52  Score=30.75  Aligned_cols=23  Identities=13%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           11 KTWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHGG
T ss_pred             cCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.04  E-value=0.54  Score=30.67  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           11 KPFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCCcCCChHHHHHHHH
Confidence            47999999999999999999974

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=86.02  E-value=0.5  Score=30.91  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           11 KPYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             CSCBCSSSCCBCSCHHHHHHHHH
T ss_pred             CceECCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.00  E-value=0.43  Score=31.24  Aligned_cols=23  Identities=22%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           11 RPFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            46999999999999999999974

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.99  E-value=0.39  Score=31.09  Aligned_cols=23  Identities=17%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2yu5_A           11 NPFKCSKCDRVFTQRNYLVQHER   33 (44)
T ss_dssp             CSEECSSSSCEESSSHHHHHHHH
T ss_pred             CCeECCCCCchhCCHHHHHHHhH
Confidence            47999999999999999999974

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=86.06  E-value=0.15  Score=29.88  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|++|+..|.....|..|+.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            5899999999999999999974

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.80  E-value=0.55  Score=30.63  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yso_A           11 KSHQCRECGEIFFQYVSLIEHQV   33 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCEEccccChhhCCHHHHHHHHH
Confidence            46999999999999999999974

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.78  E-value=0.5  Score=30.81  Aligned_cols=24  Identities=17%  Similarity=0.393  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en6_A           10 EKPYGCNECGKTFSQKSILSAHQR   33 (46)
T ss_dssp             SCCEEETTTTEEESSHHHHHHHHH
T ss_pred             CcCeECCCCCcccCchHHHHHHHH
Confidence            347999999999999999999974

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=85.77  E-value=0.27  Score=37.66  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=29.8

Q ss_pred             ccccCccccCCHHHHHHHhchhHHHHHHHHhhh
Q 015675            3 WCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD   35 (403)
Q Consensus         3 ~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~   35 (403)
                      .|++|+|.++....++.|+.-|.|-.+|+.+-.
T Consensus        15 eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~   47 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHIFSKQHISKVRETVG   47 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             cccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence            699999999999999999999999988886533

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.77  E-value=0.45  Score=31.15  Aligned_cols=24  Identities=17%  Similarity=0.396  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHH
Confidence            346999999999999999999975

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.56  E-value=0.47  Score=30.83  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           11 KPYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CTTCCTTTCCCCSSHHHHHHHHT
T ss_pred             cCcCCCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999974

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.43  E-value=0.48  Score=31.14  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           11 KPYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             CSSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CCcCCCCCCchhCCHHHHHHHHH
Confidence            46999999999999999999974

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=85.15  E-value=0.44  Score=32.18  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=18.8

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~   25 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLR   25 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHH
Confidence            46889999999999999999875

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=85.06  E-value=0.54  Score=32.59  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=22.5

Q ss_pred             ceecccCcccccCHHHHHHhhchhhH
Q 015675          153 PLICELCNVKCESQVVFDSHLVGKKH  178 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~GKKH  178 (403)
                      .|.|.+|-+.|.+...|..|+ .++|
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hy-e~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHY-EAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHH-HHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHH-Hhcc
Confidence            599999999999999999999 4556

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=84.92  E-value=0.36  Score=28.15  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.4

Q ss_pred             ceecccCcccccCHHHHHHhh
Q 015675          153 PLICELCNVKCESQVVFDSHL  173 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL  173 (403)
                      .|.|..|+..|.....|..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            589999999999999999994

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.69  E-value=0.35  Score=31.32  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2eox_A           11 KSYNCNECGKAFTRIFHLTRHQK   33 (44)
T ss_dssp             CCEEETTTTEEESSSHHHHTTHH
T ss_pred             CCeECcccCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.62  E-value=0.52  Score=30.71  Aligned_cols=24  Identities=17%  Similarity=0.470  Sum_probs=21.5

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|++|+..|.....|..|+.
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~   31 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVR   31 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHH
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHH
Confidence            347999999999999999999974

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.53  E-value=0.44  Score=31.09  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytg_A           11 KPFKCGECGKSYNQRVHLTQHQR   33 (46)
T ss_dssp             CSEECTTTCCEESSSHHHHTTGG
T ss_pred             CCeECCCCCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.49  E-value=0.5  Score=30.84  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yu8_A           11 KPYKCNECGKVFTQNSHLARHRR   33 (46)
T ss_dssp             SSEECSSSCCEESSSHHHHHHTH
T ss_pred             CCeECCcCCchhCCHHHHHHHHH
Confidence            47999999999999999999974

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=84.33  E-value=0.41  Score=42.01  Aligned_cols=26  Identities=27%  Similarity=0.555  Sum_probs=22.8

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNL   30 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl   30 (403)
                      -||++|.+.|..   |++|+..++|++-+
T Consensus        88 GyCE~C~~~y~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           88 GYCECCLQKYED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred             CCccchhhhhhh---HHHHcCCHHHHHHH
Confidence            489999999996   77999999998644

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.29  E-value=0.93  Score=32.73  Aligned_cols=23  Identities=17%  Similarity=0.543  Sum_probs=19.6

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~   36 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHIL   36 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCeECCCcCchhCCHHHHHHHHH
Confidence            46889999999999999988874

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.15  E-value=0.87  Score=32.28  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=19.7

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.+...|..|+.
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~   30 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHER   30 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            346888889888888888888874

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.89  E-value=0.56  Score=30.48  Aligned_cols=23  Identities=17%  Similarity=0.167  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCCCCCCccCCHHHHHHHHH
Confidence            46999999999999999999974

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.64  E-value=0.73  Score=33.28  Aligned_cols=28  Identities=29%  Similarity=0.672  Sum_probs=22.9

Q ss_pred             CCceecccCcccccCHHHHHHhhchhhHHH
Q 015675          151 VIPLICELCNVKCESQVVFDSHLVGKKHLA  180 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~GKKHqk  180 (403)
                      ...|.|.+|+..|.....|..|+  +.|..
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~--~~h~~   32 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQ--RKHAE   32 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHH--HHHHH
T ss_pred             CcCeECCCCCCeeCCHHHHHHHH--HHhhc
Confidence            45799999999999999999997  34543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.58  E-value=1.3  Score=31.69  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+|+..|.....|..|+.
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~   35 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQR   35 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCccCCHHHHHHHHH
Confidence            347899999999999999999874

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.48  E-value=1.2  Score=30.38  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             CCCceecccCcccccCHHHHHHhhc
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ....|.|++|+..|.....|..|+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~   33 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIK   33 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHH
Confidence            3457999999999999999999974

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=83.47  E-value=0.74  Score=31.02  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=20.6

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.....|..|+.
T Consensus        32 ~~~C~~C~~~f~~~~~l~~H~~   53 (57)
T 3uk3_C           32 PYKCEFCEYAAAQKTSLRYHLE   53 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcCCCCCcchhCCHHHHHHHHH
Confidence            5999999999999999999985

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=83.45  E-value=0.4  Score=32.38  Aligned_cols=23  Identities=22%  Similarity=0.577  Sum_probs=20.7

Q ss_pred             ceecccCcccccCHHHHHHhhch
Q 015675          153 PLICELCNVKCESQVVFDSHLVG  175 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~G  175 (403)
                      .|.|.+|+..|.+...|..|+.-
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A           29 PYHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CccCCCCCchhcCHHHHHHHHHH
Confidence            69999999999999999999853

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=83.38  E-value=0.48  Score=31.03  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=21.1

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ely_A           11 KPFKCVECGKGFSRRSALNVHHK   33 (46)
T ss_dssp             CSBCCSSSCCCBSSTTHHHHHHH
T ss_pred             CCcccCccCcccCCHHHHHHHHH
Confidence            47999999999999999999974

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=83.38  E-value=0.59  Score=31.52  Aligned_cols=22  Identities=23%  Similarity=0.671  Sum_probs=20.2

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      +|.|.+|+..|.+...|..|+.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~   22 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR   22 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH
Confidence            4889999999999999999974

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=83.28  E-value=0.77  Score=26.32  Aligned_cols=22  Identities=14%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             ceecc--cCcccccCHHHHHHhhc
Q 015675          153 PLICE--LCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~Ce--ICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.  .|+..|.....|..|+.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHH
Confidence            58999  99999999999999974

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=83.20  E-value=0.87  Score=25.84  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=18.6

Q ss_pred             cccccCccccCCHHHHHHHh
Q 015675            2 AWCELCRVDCNTLEILEQHK   21 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl   21 (403)
                      +.|.+|...|.+...|..|.
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~   21 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQ   21 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHG
T ss_pred             ccCCCCCCcCCCHHHHHHHH
Confidence            57999999999999999997

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=83.20  E-value=1  Score=28.18  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             CCceeccc--CcccccCHHHHHHhhc
Q 015675          151 VIPLICEL--CNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeI--CNV~cnSe~~y~sHL~  174 (403)
                      ...|.|.+  |+..|.....|..|+.
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~   31 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLR   31 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHH
Confidence            45799996  9999999999999974

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=83.14  E-value=0.66  Score=31.72  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=18.6

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|++|+..|.+...|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHHHH
Confidence            5788999999998888888874

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=83.11  E-value=0.78  Score=31.95  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=20.6

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        39 ~~~~C~~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A           39 KVYPCPFCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCeECCCCCCccCCHHHHHHHHH
Confidence            36999999999999999999974

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.90  E-value=0.77  Score=32.56  Aligned_cols=22  Identities=18%  Similarity=0.608  Sum_probs=20.5

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.....|..|+.
T Consensus        37 ~~~C~~C~~~f~~~~~L~~H~~   58 (70)
T 1x5w_A           37 PFKCNYCSFDTKQPSNLSKHMK   58 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CEeCCCCCCccCCHHHHHHHHH
Confidence            5999999999999999999974

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=82.50  E-value=0.66  Score=32.34  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|++|+..|.+...|..|+.
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~   31 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYV   31 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHH
T ss_pred             cceECCCCcchhCCHHHHHHHHH
Confidence            57999999999999999999974

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.45  E-value=0.82  Score=32.72  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.6

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.+...|..|+.
T Consensus        42 ~~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           42 PYKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            6999999999999999999984

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=82.23  E-value=0.85  Score=32.69  Aligned_cols=22  Identities=18%  Similarity=0.579  Sum_probs=20.5

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.+...|..|+.
T Consensus        45 ~~~C~~C~k~f~~~~~L~~H~~   66 (74)
T 2lce_A           45 PYRCNICGAQFNRPANLKTHTR   66 (74)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CEECCCCCchhCCHHHHHHHHH
Confidence            6999999999999999999983

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=81.82  E-value=0.93  Score=26.90  Aligned_cols=22  Identities=18%  Similarity=0.535  Sum_probs=20.0

Q ss_pred             ceecc--cCcccccCHHHHHHhhc
Q 015675          153 PLICE--LCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~Ce--ICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.  .|+..|.....|..|+.
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~   25 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHT
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHH
Confidence            58898  99999999999999974

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=81.80  E-value=0.83  Score=33.57  Aligned_cols=23  Identities=17%  Similarity=0.478  Sum_probs=19.4

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .+|.|++|+..|.....|..|+.
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~   25 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRR   25 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCEeCCHHHHHHHHH
Confidence            46889999999999999988874

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=81.55  E-value=0.98  Score=32.05  Aligned_cols=22  Identities=18%  Similarity=0.535  Sum_probs=20.1

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .|.|.+|+..|.+...|..|+.
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           49 PFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CEECTTTCCEESCHHHHHHHHT
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            5999999999999999999974

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=81.55  E-value=1  Score=30.78  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        29 ~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A           29 KPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHH
Confidence            36999999999999999999975

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=81.35  E-value=0.96  Score=25.89  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=19.0

Q ss_pred             cccccCccccCCHHHHHHHhc
Q 015675            2 AWCELCRVDCNTLEILEQHKN   22 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~   22 (403)
                      +.|.+|...|.+...|..|..
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHH
Confidence            579999999999999999963

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=81.31  E-value=2  Score=30.90  Aligned_cols=23  Identities=13%  Similarity=0.236  Sum_probs=16.4

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.+...|..|+.
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~   39 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRR   39 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCEECCCCCcccCCHHHHHHHHH
Confidence            46777777777777777777763

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=81.31  E-value=2.2  Score=30.17  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=22.0

Q ss_pred             CCCceeccc--CcccccCHHHHHHhhc
Q 015675          150 GVIPLICEL--CNVKCESQVVFDSHLV  174 (403)
Q Consensus       150 ~~~~~~CeI--CNV~cnSe~~y~sHL~  174 (403)
                      ....|.|.+  |+..|.+...|..|+.
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~   40 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTR   40 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHH
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHH
Confidence            456899999  9999999999999984

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=81.25  E-value=1  Score=33.05  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        31 kp~~C~~C~k~F~~~~~L~~H~~   53 (60)
T 4gzn_C           31 RPRSCPECGKCFRDQSEVNRHLK   53 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGG
T ss_pred             cCeECCCCCCCcCCHHHHHHHhC
Confidence            47999999999999999999984

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.91  E-value=1  Score=32.51  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=20.8

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.+|+..|.....|..|+.
T Consensus        37 ~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A           37 LRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH
T ss_pred             cccCCCCCCchhCCHHHHHHHHH
Confidence            36999999999999999999974

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=80.87  E-value=0.82  Score=27.24  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.6

Q ss_pred             Cceecc--cCcccccCHHHHHHhhc
Q 015675          152 IPLICE--LCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~Ce--ICNV~cnSe~~y~sHL~  174 (403)
                      ..|.|.  .|+..|.....|..|+.
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~   26 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKK   26 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHH
Confidence            368999  89999999999999974

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=80.48  E-value=0.87  Score=26.19  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=18.8

Q ss_pred             cccccCccccCCHHHHHHHhc
Q 015675            2 AWCELCRVDCNTLEILEQHKN   22 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~   22 (403)
                      +-|.+|...|.+...|..|..
T Consensus         4 ~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            4 YSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             EECSSSCCEESCHHHHHHHHT
T ss_pred             ccCCCCCcccCCHHHHHHHHH
Confidence            469999999999999999964

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=80.03  E-value=1  Score=34.15  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=22.9

Q ss_pred             CCceecccCcccccCHHHHHHhhchhhHH
Q 015675          151 VIPLICELCNVKCESQVVFDSHLVGKKHL  179 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~GKKHq  179 (403)
                      ...|.|.+|+..|.....|..|+.  .|.
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r--~Ht   37 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEA--QHG   37 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHH--HHT
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhh--hhC
Confidence            357999999999999999999974  453

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	403
d1zu1a2	55	g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF	0.002

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 55

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 156 CELCNVKCESQVVFDSHLVGKKHLANVKR 184
           C +CN+   S VV +SH +GK H+ N++ 
Sbjct: 24  CPVCNMTFSSPVVAESHYIGKTHIKNLRL 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	403
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.82
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.71
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.99
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.97
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.28
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	96.99
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	96.72
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	95.91
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.34
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	93.69
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	93.2
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	92.14
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	91.21
d1fu9a_	36	U-shaped transcription factor, different fingers {	90.64
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	90.44
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	90.23
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	89.83
d1fu9a_	36	U-shaped transcription factor, different fingers {	89.23
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	88.43
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	87.4
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	85.96
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	85.56
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	84.14
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	83.05
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	81.61
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	81.6
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	80.84

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.82  E-value=7.6e-10  Score=82.67  Aligned_cols=32  Identities=31%  Similarity=0.594  Sum_probs=30.0

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTH   33 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L   33 (403)
                      .+|.||+++|+|+.++++||.||+|+|||+..
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            48999999999999999999999999999864

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.71  E-value=4.6e-09  Score=78.39  Aligned_cols=35  Identities=34%  Similarity=0.630  Sum_probs=32.1

Q ss_pred             CceecccCcccccCHHHHHHhhchhhHHHhhhhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLVGKKHLANVKRFH  186 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~  186 (403)
                      ...+|.|||++|+|..+.++|+.||+|.++||+..
T Consensus        20 ~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          20 RSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             chhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            45689999999999999999999999999999764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.5e-06  Score=66.58  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=33.1

Q ss_pred             CcccccCccccCCHHHHHHHhchhHHHHHHHHhhh
Q 015675            1 MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHAD   35 (403)
Q Consensus         1 ~~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~   35 (403)
                      ++||..|...|.|..+|+.|..+|+||++|++|+.
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             EEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            47999999999999999999999999999999865

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.3e-06  Score=66.91  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=35.3

Q ss_pred             CCCceecccCcccccCHHHHHHhhchhhHHHhhhhhcC
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVGKKHLANVKRFHG  187 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~g  187 (403)
                      +.+.|+|-.|+..|.|+.+|+.|+++|||.++||.+..
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            46789999999999999999999999999999999943

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.28  E-value=6.4e-05  Score=58.08  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHHHHHHhhhh
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL   36 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkknl~~L~~~   36 (403)
                      .+|.+|++...|+++-.+||.||||++||+..-.+
T Consensus        33 ~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf~~   67 (72)
T d1zu1a1          33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI   67 (72)
T ss_dssp             SEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999987543

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.99  E-value=0.00016  Score=55.79  Aligned_cols=32  Identities=25%  Similarity=0.471  Sum_probs=30.5

Q ss_pred             eecccCcccccCHHHHHHhhchhhHHHhhhhh
Q 015675          154 LICELCNVKCESQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       154 ~~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l  185 (403)
                      .+|.+|++...|+.+-.+|+.||||.++||..
T Consensus        33 ~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             SEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999985

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00037  Score=52.29  Aligned_cols=33  Identities=21%  Similarity=0.568  Sum_probs=29.4

Q ss_pred             cccccCcccc--CCHHHHHHHhchhHHHHHHHHhh
Q 015675            2 AWCELCRVDC--NTLEILEQHKNGKRHKRNLRTHA   34 (403)
Q Consensus         2 ~~C~LCqV~c--nS~~vl~~Hl~GKKHkknl~~L~   34 (403)
                      +||+.|++.+  +|+++=.+|+.|++|+.|+..-=
T Consensus         4 yyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy   38 (61)
T d2vrda1           4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (61)
T ss_dssp             CEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHT
T ss_pred             hhhhhhcchhccCChhHHHHHhccHHHHHHHHHHH
Confidence            6999999999  57888899999999999997653

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0021  Score=48.10  Aligned_cols=33  Identities=33%  Similarity=0.639  Sum_probs=29.1

Q ss_pred             ceecccCccccc--CHHHHHHhhchhhHHHhhhhh
Q 015675          153 PLICELCNVKCE--SQVVFDSHLVGKKHLANVKRF  185 (403)
Q Consensus       153 ~~~CeICNV~cn--Se~~y~sHL~GKKHqkkLK~l  185 (403)
                      .|+|+-|++.++  |..+=..|++|+||+.+++..
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~y   37 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHH
Confidence            699999999994  567778999999999999875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.0055  Score=39.67  Aligned_cols=28  Identities=25%  Similarity=0.549  Sum_probs=26.0

Q ss_pred             ceecccCcccccCHHHHHHhhchhhHHH
Q 015675          153 PLICELCNVKCESQVVFDSHLVGKKHLA  180 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~GKKHqk  180 (403)
                      +|.|..||-.|.....|-.||..|-|.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CcccceeeeeEeeccchhHhhhhhhhcc
Confidence            4899999999999999999999998865

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.69  E-value=0.022  Score=37.88  Aligned_cols=29  Identities=28%  Similarity=0.594  Sum_probs=24.9

Q ss_pred             CCCceecccCcccccCHHHHHHhhchhhHHH
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVGKKHLA  180 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~GKKHqk  180 (403)
                      +..+|.|++|+..|.....|..|+  +.|..
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~--r~Ht~   32 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHL--KVHTD   32 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHH--GGGTS
T ss_pred             CCccccCCCCCCcccChHHHHHHc--cccCC
Confidence            456899999999999999999998  46643

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.014  Score=41.89  Aligned_cols=35  Identities=29%  Similarity=0.671  Sum_probs=32.1

Q ss_pred             ecccCcccccCHHHHHHhhchhhHHHhhhhhcCCc
Q 015675          155 ICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHR  189 (403)
Q Consensus       155 ~CeICNV~cnSe~~y~sHL~GKKHqkkLK~l~g~~  189 (403)
                      -|.+|++.+.+....+.|+-.+.|..+||..-+.+
T Consensus         8 eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~v~~q   42 (48)
T d2yrka1           8 ECTLCGVKYSARLSIRDHIFSKQHISKVRETVGSQ   42 (48)
T ss_dssp             CCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCSS
T ss_pred             cCcccceeeeeecchHhhhhhHHHHHHHHHHHHhH
Confidence            69999999999999999999999999999875543

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.047  Score=36.15  Aligned_cols=26  Identities=19%  Similarity=0.528  Sum_probs=22.9

Q ss_pred             CCCceecccCcccccCHHHHHHhhch
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVG  175 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~G  175 (403)
                      +..+|.|++|+..|.....|..|+.-
T Consensus         5 gekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCCEeCCCCcccccchHHHHHHccc
Confidence            45689999999999999999999753

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.21  E-value=0.068  Score=35.35  Aligned_cols=28  Identities=25%  Similarity=0.556  Sum_probs=24.3

Q ss_pred             CCCceecccCcccccCHHHHHHhhchhhHH
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLVGKKHL  179 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~GKKHq  179 (403)
                      +..+|.|.+|+..|.....|..|+  +.|.
T Consensus         8 geKPy~C~~C~k~F~~~~~L~~H~--r~H~   35 (37)
T d1p7aa_           8 GIKPFQCPDCDRSFSRSDHLALHR--KRHM   35 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHH--GGGT
T ss_pred             CccCeEeCCCCCEecCHHHHHHHH--hcCc
Confidence            456899999999999999999997  4564

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.64  E-value=0.049  Score=36.82  Aligned_cols=20  Identities=25%  Similarity=0.644  Sum_probs=18.7

Q ss_pred             cccccCccccCCHHHHHHHh
Q 015675            2 AWCELCRVDCNTLEILEQHK   21 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl   21 (403)
                      .||..|++.|++...|..|.
T Consensus         9 rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           9 KYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHH
T ss_pred             hHHhhCCceehhHHHHHHHH
Confidence            59999999999999999995

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.086  Score=34.69  Aligned_cols=25  Identities=24%  Similarity=0.594  Sum_probs=22.3

Q ss_pred             CCCceecccCcccccCHHHHHHhhc
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      +..+|.|++|+..|.....|..|+.
T Consensus         5 gekPy~C~~C~k~F~~~~~L~~H~r   29 (36)
T d1x6ha2           5 GEKPYACSHCDKTFRQKQLLDMHFK   29 (36)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCEECCCCCCCcCCHhHHHHhCc
Confidence            3468999999999999999999983

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.23  E-value=0.087  Score=33.36  Aligned_cols=23  Identities=17%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .+|.|.+|+..|.-...|..|+.
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCC
Confidence            47999999999999999999974

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=89.83  E-value=0.086  Score=33.44  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.5

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      +|.|.+|+..|.....|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            6999999999999999999984

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.23  E-value=0.11  Score=35.08  Aligned_cols=22  Identities=14%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             CceecccCcccccCHHHHHHhh
Q 015675          152 IPLICELCNVKCESQVVFDSHL  173 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL  173 (403)
                      ...+|..|+|.|++-.+|..|.
T Consensus         7 ~~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           7 MKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHH
T ss_pred             hhhHHhhCCceehhHHHHHHHH
Confidence            4569999999999999999994

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.43  E-value=0.15  Score=33.25  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=22.1

Q ss_pred             CCCceecccCcccccCHHHHHHhhc
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      +..+|.|+.|+..|.....|..|+.
T Consensus         4 gekpy~C~~Cgk~F~~~~~L~~H~r   28 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSSILVQHQR   28 (33)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCCeeCCCCCCEeCchHHhHhhcc
Confidence            3468999999999999999999963

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.18  Score=33.99  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.6

Q ss_pred             CCceecccCcccccCHHHHHHhhc
Q 015675          151 VIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       151 ~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ..+|.|++|+..|.....|..|++
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCCcCChHHhhccCc
Confidence            358999999999999999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.96  E-value=0.24  Score=32.70  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=22.2

Q ss_pred             CCCceecccCcccccCHHHHHHhhc
Q 015675          150 GVIPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       150 ~~~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      ...+|.|+.|+..|.....|..|..
T Consensus         9 ~ekpy~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCCEecCCCCceeeCHHHHHHhCc
Confidence            3468999999999999999999974

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.56  E-value=0.21  Score=31.98  Aligned_cols=23  Identities=22%  Similarity=0.637  Sum_probs=20.7

Q ss_pred             ceecccCcccccCHHHHHHhhch
Q 015675          153 PLICELCNVKCESQVVFDSHLVG  175 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~G  175 (403)
                      .|.|+-|++.|.-..+|+.|+..
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRT   23 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CccccccCcccCCHHHHHHHHHH
Confidence            38999999999999999999853

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.14  E-value=0.17  Score=32.09  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             ceecccCcccccCHHHHHHhhc
Q 015675          153 PLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       153 ~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      +|.|.+|+..|.....|..|+.
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHH
T ss_pred             CEECCcCCCeecchHHhhhhcC
Confidence            6899999999999999999974

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.05  E-value=0.098  Score=33.67  Aligned_cols=27  Identities=26%  Similarity=0.497  Sum_probs=24.9

Q ss_pred             cccccCccccCCHHHHHHHhchhHHHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHKR   28 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHkk   28 (403)
                      +.|..|+.+|-++-.|..|...|-|.|
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cccceeeeeEeeccchhHhhhhhhhcc
Confidence            579999999999999999999998865

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.61  E-value=0.35  Score=32.96  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.8

Q ss_pred             CceecccCcccccCHHHHHHhhc
Q 015675          152 IPLICELCNVKCESQVVFDSHLV  174 (403)
Q Consensus       152 ~~~~CeICNV~cnSe~~y~sHL~  174 (403)
                      .+|.|.+|+..|.....|..|+.
T Consensus        29 kpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1          29 RPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CSEECTTTSCEESSSHHHHHHHT
T ss_pred             cCCcCCCcCCEecCHHHHHHHHh
Confidence            47999999999999999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.60  E-value=0.33  Score=31.90  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             cccccCccccCCHHHHHHHhchhHHH
Q 015675            2 AWCELCRVDCNTLEILEQHKNGKRHK   27 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~GKKHk   27 (403)
                      +.|.+|...|+....|..|.  +.|.
T Consensus         8 y~C~~C~k~F~~~~~L~~H~--r~Ht   31 (35)
T d1srka_           8 FVCRICLSAFTTKANCARHL--KVHT   31 (35)
T ss_dssp             EECSSSCCEESSHHHHHHHH--GGGT
T ss_pred             ccCCCCCCcccChHHHHHHc--cccC
Confidence            57999999999999999997  5674

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.84  E-value=0.45  Score=30.39  Aligned_cols=21  Identities=24%  Similarity=0.545  Sum_probs=19.2

Q ss_pred             cccccCccccCCHHHHHHHhc
Q 015675            2 AWCELCRVDCNTLEILEQHKN   22 (403)
Q Consensus         2 ~~C~LCqV~cnS~~vl~~Hl~   22 (403)
                      +.|.-|++.|..+++|+.|..
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIR   22 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIR   22 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH
T ss_pred             ccccccCcccCCHHHHHHHHH
Confidence            579999999999999999974