Citrus Sinensis ID: 015702

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLISSITAGAGSLNCRKGKPC
ccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEcccccccccccccHHHHHHHHccccEEEEEEEcEEEEEccEEEEccccEEEccccEEEEEccccEEEEEEccEEEEccEEcccccccccccccccccccccccccccEEEEEcccEEEEEcccccccccccEEEEEccEEEEEEEEEEEccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEEcEEEccccEEEEcccccEEEEEcEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccc
cHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEcccEEEEEEccEEEEEEEccEEccccccHHHcccccEEEEccEEEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEccccccccccccccccccccHHHHHHHHHccccccccccccc
MAIPLLLWLLLCLLaptfissspvqdpelVVEEVHKSINASrrnlgflscgtgnpiddcwrcdpkweeNRQQLADCAIGfgkqaiggkdgkiyvvtdsgdddpvnpkpgtlryaviqdepLWIIFARDMVITLKEELIMNSFKtidgrgasvhiaggpcitvQYVTNIIIHGinihdckrggnanvrdspshygwrtisdgdgvsifggSHVWvdhcslsncndglidaihgstaitisnnymthhnkvmllghsdtftqdkNMQVTIAFNHFGEGlvqrmprcrhgyfhvvnndythwemyalggsasptinsqgnrfvapndrfnkevtkyedapesewknwnwrsegdlmvngafftpsgagasssyakasslgarpsslISSITagagslncrkgkpc
MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINasrrnlgflscGTGNPIDDCWRCDPKWEENRQQLADCAIGFgkqaiggkDGKIYVVTdsgdddpvnpkpGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVtkyedapesewknwnWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLIssitagagslncrkgkpc
MAIPlllwlllcllAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPsgagasssyakasslgaRPSSLISSITAGAGSLNCRKGKPC
**IPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTD***********GTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSA*******************************EWKNWNWRSEGDLMVNGAFFT******************************************
*AIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVH***************GTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLISSITAGAGSLNCRKGKPC
MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVT********EWKNWNWRSEGDLMVNGAFFTPSG*****************SSLISSITAGAGSLNCRKGKPC
MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSG***************************************
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLISSITAGAGSLNCRKGKPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query402 2.2.26 [Sep-21-2011]
Q9FXD8408 Probable pectate lyase 5 yes no 0.962 0.948 0.863 0.0
Q93Z25432 Probable pectate lyase 22 no no 0.995 0.925 0.789 0.0
Q9C5M8408 Probable pectate lyase 18 no no 0.972 0.958 0.825 0.0
Q944R1470 Probable pectate lyase 15 no no 0.967 0.827 0.696 1e-176
Q9LTZ0412 Putative pectate lyase 11 no no 0.982 0.958 0.752 1e-175
P24396404 Probable pectate lyase P1 N/A no 0.947 0.943 0.766 1e-173
O24554401 Pectate lyase OS=Zinnia e N/A no 0.987 0.990 0.760 1e-173
Q9M8Z8416 Probable pectate lyase 8 no no 1.0 0.966 0.680 1e-166
Q9LJ42440 Probable pectate lyase 10 no no 0.942 0.861 0.721 1e-164
Q940Q1431 Probable pectate lyase 1 no no 0.942 0.879 0.701 1e-162
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function desciption
 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/387 (86%), Positives = 361/387 (93%)

Query: 16  PTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLAD 75
           PTFI+S+PV +PELVV+EV++ INASRRNLG LSCGTGNPIDDCWRCDPKWE+NRQ+LAD
Sbjct: 22  PTFIASTPVSEPELVVQEVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLAD 81

Query: 76  CAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKE 135
           CAIGFGK AIGG+DGKIYVVTDS D D VNPKPGTLR+AVIQDEPLWIIFARDMVI LKE
Sbjct: 82  CAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKE 141

Query: 136 ELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGW 195
           ELIMNSFKTIDGRGASVHIAGG CITVQYVTNIIIHG+NIHDCKR GNA VRDSPSHYGW
Sbjct: 142 ELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRDSPSHYGW 201

Query: 196 RTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHS 255
           RT SDGD VSIFGGSHVWVDHCSLSNC DGLIDAIHGSTAITISNNY++HHNKVMLLGHS
Sbjct: 202 RTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNKVMLLGHS 261

Query: 256 DTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQ 315
           D++T+DKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW+MYA+GGSA+PTINSQ
Sbjct: 262 DSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQ 321

Query: 316 GNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASSSYAKASS 375
           GNRF+APND   KEVTKYEDAP S+WK WNWRSEGDL +NGAFFTPSG GASSSYAKASS
Sbjct: 322 GNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASS 381

Query: 376 LGARPSSLISSITAGAGSLNCRKGKPC 402
           L ARPSSL++S+T+ AG+L CRKG  C
Sbjct: 382 LSARPSSLVASVTSNAGALFCRKGSRC 408

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description
>sp|P24396|PLY18_SOLLC Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1 Back     alignment and function description
>sp|O24554|PLY_ZINEL Pectate lyase OS=Zinnia elegans PE=1 SV=1 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
14289169409 pectate lyase [Salix gilgiana] 0.965 0.948 0.902 0.0
225424562403 PREDICTED: probable pectate lyase 5 [Vit 0.960 0.957 0.901 0.0
225456814458 PREDICTED: probable pectate lyase 5-like 0.962 0.844 0.875 0.0
297733652403 unnamed protein product [Vitis vinifera] 0.962 0.960 0.875 0.0
147781724403 hypothetical protein VITISV_004734 [Viti 0.962 0.960 0.875 0.0
356563159406 PREDICTED: probable pectate lyase 22 iso 0.962 0.953 0.886 0.0
118484987402 unknown [Populus trichocarpa] 1.0 1.0 0.900 0.0
224100109402 predicted protein [Populus trichocarpa] 1.0 1.0 0.900 0.0
345104287411 pectate lyase [Gossypium schwendimanii] 0.955 0.934 0.882 0.0
224121874403 predicted protein [Populus trichocarpa] 0.962 0.960 0.865 0.0
>gi|14289169|dbj|BAB59066.1| pectate lyase [Salix gilgiana] Back     alignment and taxonomy information
 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/388 (90%), Positives = 372/388 (95%)

Query: 15  APTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLA 74
           AP FIS SPVQDPE+VVEEVH+SINASRR LGFLSCGTGNPIDDCWRCDPKW ENRQ+LA
Sbjct: 22  APNFISCSPVQDPEVVVEEVHRSINASRRKLGFLSCGTGNPIDDCWRCDPKWGENRQRLA 81

Query: 75  DCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLK 134
           DCAIGFGK AIGG+DGKIY VTDSGDDDPVNPKPGTLRYAVIQDEPLWI+FARDMVI L+
Sbjct: 82  DCAIGFGKHAIGGRDGKIYAVTDSGDDDPVNPKPGTLRYAVIQDEPLWIVFARDMVIKLR 141

Query: 135 EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYG 194
           EELIMNSFKTIDGRGASVHIAGGPCIT+QYVTNIIIHG+NIHDCKRGGNA+VRDSPSHYG
Sbjct: 142 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNAHVRDSPSHYG 201

Query: 195 WRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGH 254
           WRT+SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNY+THHNKVMLLGH
Sbjct: 202 WRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYLTHHNKVMLLGH 261

Query: 255 SDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINS 314
           SD++ QDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW+MYA+GGSA PTINS
Sbjct: 262 SDSYKQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWKMYAIGGSADPTINS 321

Query: 315 QGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASSSYAKAS 374
           QGNRF+APNDRFNKEVTK+EDAP+S WK WNWRSEGDL++NGAFFT SGAGASSSYAKAS
Sbjct: 322 QGNRFLAPNDRFNKEVTKHEDAPQSAWKGWNWRSEGDLLLNGAFFTASGAGASSSYAKAS 381

Query: 375 SLGARPSSLISSITAGAGSLNCRKGKPC 402
           SLGAR SSL+SSITAGAGSL C+KG  C
Sbjct: 382 SLGARSSSLVSSITAGAGSLVCKKGSRC 409

Source: Salix gilgiana

Species: Salix gilgiana

Genus: Salix

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424562|ref|XP_002285340.1| PREDICTED: probable pectate lyase 5 [Vitis vinifera] gi|296081403|emb|CBI16836.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456814|ref|XP_002275781.1| PREDICTED: probable pectate lyase 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733652|emb|CBI14899.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147781724|emb|CAN76500.1| hypothetical protein VITISV_004734 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563159|ref|XP_003549832.1| PREDICTED: probable pectate lyase 22 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|118484987|gb|ABK94358.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224100109|ref|XP_002311747.1| predicted protein [Populus trichocarpa] gi|222851567|gb|EEE89114.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|345104287|gb|AEN70965.1| pectate lyase [Gossypium schwendimanii] Back     alignment and taxonomy information
>gi|224121874|ref|XP_002318694.1| predicted protein [Populus trichocarpa] gi|222859367|gb|EEE96914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.965 0.950 0.822 1.4e-183
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 0.962 0.948 0.792 1.7e-178
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.952 0.886 0.780 1.8e-174
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.957 0.934 0.734 3.8e-165
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.937 0.802 0.686 2.7e-155
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.942 0.908 0.703 1.9e-154
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.942 0.911 0.690 2e-152
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 0.942 0.861 0.687 1.6e-150
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 0.942 0.879 0.667 3.3e-150
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.952 0.847 0.643 1.4e-144
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1781 (632.0 bits), Expect = 1.4e-183, P = 1.4e-183
 Identities = 319/388 (82%), Positives = 347/388 (89%)

Query:    15 APTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLA 74
             +PTFI+S+PV +PELVV+EV++ INASRRNLG LSCGTGNPIDDCWRCDPKWE+NRQ+LA
Sbjct:    21 SPTFIASTPVSEPELVVQEVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLA 80

Query:    75 DCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLK 134
             DCAIGFGK AIGG+DGKIYVVTDS D D VNPKPGTLR+AVIQDEPLWIIFARDMVI LK
Sbjct:    81 DCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLK 140

Query:   135 EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYG 194
             EELIMNSFKTIDGRGASVHIAGG CITVQYVTNIIIHG+NIHDCKR GNA VRDSPSHYG
Sbjct:   141 EELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRDSPSHYG 200

Query:   195 WRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGH 254
             WRT SDGD VSIFGGSHVWVDHCSLSNC DGLIDAIHGSTAITISNNY++HHNKVMLLGH
Sbjct:   201 WRTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNKVMLLGH 260

Query:   255 SDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINS 314
             SD++T+DKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW+MYA+GGSA+PTINS
Sbjct:   261 SDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINS 320

Query:   315 QGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXXXXXXXX 374
             QGNRF+APND   KEVTKYEDAP S+WK WNWRSEGDL +NGAFFTP             
Sbjct:   321 QGNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKAS 380

Query:   375 XXXXRPSSLISSITAGAGSLNCRKGKPC 402
                 RPSSL++S+T+ AG+L CRKG  C
Sbjct:   381 SLSARPSSLVASVTSNAGALFCRKGSRC 408
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LTZ0PLY11_ARATH4, ., 2, ., 2, ., 20.75250.98250.9587nono
P40972PLY_TOBAC4, ., 2, ., 2, ., 20.54770.87810.8891N/Ano
P40973PLY_LILLO4, ., 2, ., 2, ., 20.56620.93530.8663N/Ano
Q93Z25PLY22_ARATH4, ., 2, ., 2, ., 20.78960.99500.9259nono
Q9FXD8PLY5_ARATH4, ., 2, ., 2, ., 20.86300.96260.9485yesno
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.76070.98750.9900N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.76620.94770.9430N/Ano
Q9LJ42PLY10_ARATH4, ., 2, ., 2, ., 20.72170.94270.8613nono
Q9C5M8PLY18_ARATH4, ., 2, ., 2, ., 20.82530.97260.9583nono
Q940Q1PLY1_ARATH4, ., 2, ., 2, ., 20.70180.94270.8793nono
Q93WF1PLY20_ARATH4, ., 2, ., 2, ., 20.73220.94270.9088nono
P15721PLY56_SOLLC4, ., 2, ., 2, ., 20.50780.93030.9396N/Ano
P15722PLY59_SOLLC4, ., 2, ., 2, ., 20.59450.90290.8084N/Ano
Q9SVQ6PLY14_ARATH4, ., 2, ., 2, ., 20.73560.94270.8652nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.983
4th Layer4.2.2.20.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
smart00656190 smart00656, Amb_all, Amb_all domain 7e-83
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 7e-76
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 4e-25
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  251 bits (642), Expect = 7e-83
 Identities = 104/207 (50%), Positives = 125/207 (60%), Gaps = 28/207 (13%)

Query: 128 DMVITLK--EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNAN 185
           D+ ITL     +I+NS KTIDGRG+ V I GG  +T++ V+N+II  + IHD K      
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVYG-- 57

Query: 186 VRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC---------NDGLIDAIHGSTAI 236
                        SDGD +SI G S+VW+DH SLS C          DGLID  +GST +
Sbjct: 58  -------------SDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 237 TISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY 296
           TISNNY  +H KVMLLGHSD+ T D  M+VTIA N+FG  L QR PR R GY HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 297 THWEMYALGGSASPTINSQGNRFVAPN 323
           T W  YA+GG    TI S+GN F AP 
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 402
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.84
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.41
PLN02218431 polygalacturonase ADPG 98.09
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.93
PLN03003456 Probable polygalacturonase At3g15720 97.9
PLN02793443 Probable polygalacturonase 97.89
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.88
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.84
PLN02155394 polygalacturonase 97.74
PLN03010409 polygalacturonase 97.63
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.57
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.48
PLN02218431 polygalacturonase ADPG 97.42
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.39
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.21
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.1
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.06
PLN02155394 polygalacturonase 97.0
PLN03003456 Probable polygalacturonase At3g15720 96.97
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.94
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 96.86
PLN02197588 pectinesterase 96.74
PLN02480343 Probable pectinesterase 96.7
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.69
PLN03010409 polygalacturonase 96.69
smart00656190 Amb_all Amb_all domain. 96.63
PLN02793443 Probable polygalacturonase 96.55
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.09
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.07
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 96.03
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.17
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.88
PLN02432293 putative pectinesterase 94.49
PLN02301548 pectinesterase/pectinesterase inhibitor 94.48
PLN02416541 probable pectinesterase/pectinesterase inhibitor 94.45
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 94.23
PLN02176340 putative pectinesterase 94.18
PLN02682369 pectinesterase family protein 94.13
PLN02773317 pectinesterase 93.69
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.67
PLN02314586 pectinesterase 93.62
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.53
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.5
PLN02634359 probable pectinesterase 93.3
PLN02201520 probable pectinesterase/pectinesterase inhibitor 93.27
PLN02488509 probable pectinesterase/pectinesterase inhibitor 93.26
PLN02665366 pectinesterase family protein 93.11
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 92.99
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 92.98
PLN02304379 probable pectinesterase 92.72
PLN02916502 pectinesterase family protein 92.61
PLN02484587 probable pectinesterase/pectinesterase inhibitor 92.53
PLN02217670 probable pectinesterase/pectinesterase inhibitor 92.44
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 92.35
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.34
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 91.87
PLN02497331 probable pectinesterase 91.26
PLN02671359 pectinesterase 91.26
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.14
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 90.76
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.36
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 90.13
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 89.93
PRK10531422 acyl-CoA thioesterase; Provisional 88.34
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 88.29
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 87.6
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 85.7
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 80.64
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-57  Score=441.00  Aligned_cols=270  Identities=29%  Similarity=0.364  Sum_probs=219.7

Q ss_pred             CCcCCCCCeeEEEcCCCCCCCCCCCchhHHHhhhcCCCEEEEEeeeeEEeeC------ceEEeecCeeEeecCCceEEeC
Q 015702           83 QAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLK------EELIMNSFKTIDGRGASVHIAG  156 (402)
Q Consensus        83 ~ttGG~gG~vy~VT~~~D~~~~~~~pGtLr~av~~~~P~~IvF~~~g~I~L~------~~L~v~snkTI~G~ga~~~I~~  156 (402)
                      +||||.||++++|++.+|          |..++...+|.++|.-+.|+|++.      .+|.+.|||||.|.|++++|. 
T Consensus        47 GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~-  115 (345)
T COG3866          47 GTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV-  115 (345)
T ss_pred             CcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE-
Confidence            799999999999999998          788889999996666667888876      467789999999999999998 


Q ss_pred             CceEEEEeeecEEEEeeEEeecccCCCcccccCCCCCCCccccCCCcEEE-eCCceEEEEeeEecC--------CCCCee
Q 015702          157 GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSI-FGGSHVWVDHCSLSN--------CNDGLI  227 (402)
Q Consensus       157 G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~~~g~~~~~~gDaI~i-~gs~nVWIDHcs~s~--------~~Dgli  227 (402)
                      |++|+|+.+.|||||||+|++...++                ...|+|+| .+++|||||||+|+.        ..||++
T Consensus       116 g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~  179 (345)
T COG3866         116 GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV  179 (345)
T ss_pred             eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence            77999999999999999999865321                12699999 579999999999999        799999


Q ss_pred             EeeeCCceEEEEcceecccCeeeecCCCCcc-cCCCcceEEEEceeecCCCcCCCccccCceEEEEcCeeeCCc--ceee
Q 015702          228 DAIHGSTAITISNNYMTHHNKVMLLGHSDTF-TQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWE--MYAL  304 (402)
Q Consensus       228 Dv~~~s~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~vTihhN~f~~~~~~R~Pr~R~G~~Hv~NN~y~~~~--~yai  304 (402)
                      ||++++++||||||+|++|+|.+|+|.+|+. .+|++.+||+||||| +|+.||+||+|||.+||+||||....  .||+
T Consensus       180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~  258 (345)
T COG3866         180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI  258 (345)
T ss_pred             EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence            9999999999999999999999999999984 457889999999999 79999999999999999999999654  4666


Q ss_pred             ccCCCceEEEEccEEecCCCCcccccccccCCCcccccCceeeccCceEEeCeEEecCCCCC------CCCCCCCCcccc
Q 015702          305 GGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGA------SSSYAKASSLGA  378 (402)
Q Consensus       305 gg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~~------~~~~~~~~~~~~  378 (402)
                      +-+..++|++|+|||+....+..---+++.  +      ..|.     +-+|++|..++...      +..++..++|++
T Consensus       259 ~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--~------GY~~-----~d~gsy~~~s~~~~~~~~G~~w~ps~~Y~Ytv  325 (345)
T COG3866         259 TIGTSAKIYVENNYFENGSEGLGFLDTKGT--S------GYAN-----QDSGSYLNSSKSMSVRAGGVTWNPSSYYSYTV  325 (345)
T ss_pred             eeccceEEEEecceeccCCCCceeeecCCc--c------ceEE-----eccCceecccCCcccccCCccCCCCCCccccc
Confidence            655569999999999997554321112211  0      1121     03466666555432      334666788999


Q ss_pred             CCCch-HhhhhcccCC
Q 015702          379 RPSSL-ISSITAGAGS  393 (402)
Q Consensus       379 ~~~~~-v~~~t~~AG~  393 (402)
                      +|.+. .+.+|++||+
T Consensus       326 d~~~dVks~Vt~yAGa  341 (345)
T COG3866         326 DPPEDVKSFVTNYAGA  341 (345)
T ss_pred             CChHHhhhhhhccccc
Confidence            97765 5778899995

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 6e-88
3zsc_A340 Catalytic Function And Substrate Recognition Of The 1e-15
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 3e-14
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 3e-14
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 2e-13
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 2e-13
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 4e-13
3krg_A399 Structural Insights Into Substrate Specificity And 8e-13
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 1e-12
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 8e-11
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 1e-08
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 2e-08
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 2e-08
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 5e-06
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 3e-04
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 8e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  321 bits (822), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 162/315 (51%), Positives = 216/315 (68%), Gaps = 16/315 (5%)
Query: 54  NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRY 113
           NPID CWR D  W++NR +LADCA+GFG   +GGK G  Y VT S DD+PVNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 114 AVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA-GGPCITVQYVTNIIIHG 172
              +++ LWIIF+++M I LK  L +   KTIDGRGA VH+  GGPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 173 INIHDCKRG--GNANVRDS----PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGL 226
           ++IH C     G+  V +S    P H       DGD +++   ++ W+DH SLS+C+DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 227 IDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH 286
           ID   GST ITISNN+  +H+KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR R+
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY 235
Query: 287 GYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYE--DAPESEWKNW 344
           G  HV NN+Y  W +YA+GGS++PTI S+GN F AP++ + KEVTK    ++P S   NW
Sbjct: 236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESP-SACANW 294
Query: 345 NWRSEGDLMVNGAFF 359
            WRS  D  +NGA+F
Sbjct: 295 VWRSTRDAFINGAYF 309
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-143
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 5e-97
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 6e-91
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 2e-86
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 7e-86
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 3e-74
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 1e-73
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 4e-72
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 3e-70
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 6e-70
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 2e-61
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 3e-06
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-06
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 5e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  410 bits (1054), Expect = e-143
 Identities = 163/345 (47%), Positives = 220/345 (63%), Gaps = 5/345 (1%)

Query: 54  NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRY 113
           NPID CWR D  W++NR +LADCA+GFG   +GGK G  Y VT + DD+PVNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 114 AVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHG 172
              +++ LWIIF+++M I LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 173 INIHDCKRGGNANVRDSPSHYGW-RTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIH 231
           ++IH C      +V  S S         DGD +++   ++ W+DH SLS+C+DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 232 GSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHV 291
           GST ITISNN+  +H+KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 292 VNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDA-PESEWKNWNWRSEG 350
            NN+Y  W +YA+GGS++PTI S+GN F AP++ + KEVTK       S   NW WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 351 DLMVNGAFFTPSGAGAS-SSYAKASSLGARPSSLISSITAGAGSL 394
           D  +NGA+F  SG     + Y    +      +    +T  AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.4
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.37
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.09
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.01
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.98
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.95
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.89
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.88
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.86
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.85
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.84
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.84
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.8
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.77
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.76
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.76
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.72
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.7
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.69
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.67
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.65
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.49
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.49
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.46
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.45
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.28
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.23
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.16
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.13
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.12
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.1
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.03
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.86
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.79
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.74
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.72
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 96.6
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.58
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.58
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.49
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.47
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.47
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.43
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.4
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.39
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.32
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.32
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.09
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.73
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.17
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.01
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 90.9
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 82.87
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=8.2e-104  Score=790.12  Aligned_cols=342  Identities=47%  Similarity=0.877  Sum_probs=326.5

Q ss_pred             CCccccccccCccccccccccccCcccccCCCcCCCCCeeEEEcCCCCCCCCCCCchhHHHhhhcCCCEEEEEeeeeEEe
Q 015702           53 GNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIT  132 (402)
Q Consensus        53 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~vy~VT~~~D~~~~~~~pGtLr~av~~~~P~~IvF~~~g~I~  132 (402)
                      +||||+||||+|+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+||++++||||||+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999999977 6899999999999999999999999999999


Q ss_pred             eCceEEeecCeeEeecCCceEEeC-CceEEEEeeecEEEEeeEEeecccCCCccc-ccCCCCCCCccccCCCcEEEeCCc
Q 015702          133 LKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANV-RDSPSHYGWRTISDGDGVSIFGGS  210 (402)
Q Consensus       133 L~~~L~v~snkTI~G~ga~~~I~~-G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i-~~s~~~~g~~~~~~gDaI~i~gs~  210 (402)
                      |+++|+|.|||||+|||++++|.+ |+||++++++|||||||+|+++.|..++.| |++++|+|++...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999986 689999999999999999999998888877 999989888877899999999999


Q ss_pred             eEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCcCCCccccCceEE
Q 015702          211 HVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFH  290 (402)
Q Consensus       211 nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R~G~~H  290 (402)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+.+.|+.++||||||||+.++.+||||+|+|++|
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~h  239 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEE
Confidence            99999999999999999999999999999999999999999999998888888999999999966899999999999999


Q ss_pred             EEcCeeeCCcceeeccCCCceEEEEccEEecCCCCcccccccccCCC-cccccCceeeccCceEEeCeEEecCCCCCCC-
Q 015702          291 VVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAP-ESEWKNWNWRSEGDLMVNGAFFTPSGAGASS-  368 (402)
Q Consensus       291 v~NN~y~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~-~~~~~~w~w~s~Gd~~~nGa~f~~sg~~~~~-  368 (402)
                      ++||||++|.+|++++++++++++|+|||++++++..|++++|.+++ +.+|++|+|+++||+|+|||+|++||...+. 
T Consensus       240 v~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~  319 (346)
T 1pxz_A          240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCC
Confidence            99999999999999999999999999999999999899999998876 6789999999999999999999999987554 


Q ss_pred             CCCCCCccccCCCchHhhhhcccCCCC
Q 015702          369 SYAKASSLGARPSSLISSITAGAGSLN  395 (402)
Q Consensus       369 ~~~~~~~~~~~~~~~v~~~t~~AG~l~  395 (402)
                      +|+++++|+++|+++|++||++||||.
T Consensus       320 ~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCCcccccccCCHHHHHHHhhhccCCC
Confidence            599999999999999999999999984
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 402
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-147
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-89
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 7e-69
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 8e-68
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-61
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 4e-42
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-05
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 0.002
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 0.003
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  420 bits (1080), Expect = e-147
 Identities = 163/345 (47%), Positives = 220/345 (63%), Gaps = 5/345 (1%)

Query: 54  NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRY 113
           NPID CWR D  W++NR +LADCA+GFG   +GGK G  Y VT + DD+PVNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 114 AVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHG 172
              +++ LWIIF+++M I LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 173 INIHDCKRGGNANVRDSPS-HYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIH 231
           ++IH C      +V  S S         DGD +++   ++ W+DH SLS+C+DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 232 GSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHV 291
           GST ITISNN+  +H+KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR R+G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240

Query: 292 VNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDA-PESEWKNWNWRSEG 350
            NN+Y  W +YA+GGS++PTI S+GN F AP++ + KEVTK       S   NW WRS  
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300

Query: 351 DLMVNGAFFTPSGAGAS-SSYAKASSLGARPSSLISSITAGAGSL 394
           D  +NGA+F  SG     + Y    +      +    +T  AG +
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.15
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.98
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.76
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.75
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.66
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.59
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.49
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.43
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.39
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.39
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.38
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.1
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.1
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.03
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.77
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.74
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.3
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.93
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.58
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.41
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 95.33
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 94.69
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.28
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.17
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 93.59
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 87.98
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 86.5
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=4.7e-97  Score=738.71  Aligned_cols=342  Identities=47%  Similarity=0.880  Sum_probs=311.7

Q ss_pred             CCccccccccCccccccccccccCcccccCCCcCCCCCeeEEEcCCCCCCCCCCCchhHHHhhhcCCCEEEEEeeeeEEe
Q 015702           53 GNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIT  132 (402)
Q Consensus        53 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~vy~VT~~~D~~~~~~~pGtLr~av~~~~P~~IvF~~~g~I~  132 (402)
                      .||||+||||+|||+.+||+||+||||||++||||+||+||+||+++| ++.+|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999988 6889999999999999999999999999999


Q ss_pred             eCceEEeecCeeEeecCCceEEeC-CceEEEEeeecEEEEeeEEeecccCCCcccccCCC-CCCCccccCCCcEEEeCCc
Q 015702          133 LKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPS-HYGWRTISDGDGVSIFGGS  210 (402)
Q Consensus       133 L~~~L~v~snkTI~G~ga~~~I~~-G~~i~i~~a~NVIIrnl~i~~~~~g~~~~i~~s~~-~~g~~~~~~gDaI~i~gs~  210 (402)
                      |+++|.|+|||||+|||+|++|.+ |.+|.++.++|||||||+||++.+...+.++..+. +.+.....++|+|+|.+++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999874 66799999999999999999988765544322221 1122234689999999999


Q ss_pred             eEEEEeeEecCCCCCeeEeeeCCceEEEEcceecccCeeeecCCCCcccCCCcceEEEEceeecCCCcCCCccccCceEE
Q 015702          211 HVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFH  290 (402)
Q Consensus       211 nVWIDHcs~s~~~DgliDv~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~vTihhN~f~~~~~~R~Pr~R~G~~H  290 (402)
                      |||||||+|+|+.||+||+++++++||||||+|++|+|++|+|++++...++.++||||||+|.++..+|+|++|+|.+|
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~h  239 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVH  239 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEE
Confidence            99999999999999999999999999999999999999999999998877888999999999988889999999999999


Q ss_pred             EEcCeeeCCcceeeccCCCceEEEEccEEecCCCCcccccccccCC-CcccccCceeeccCceEEeCeEEecCCCCC-CC
Q 015702          291 VVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDA-PESEWKNWNWRSEGDLMVNGAFFTPSGAGA-SS  368 (402)
Q Consensus       291 v~NN~y~~~~~yaigg~~~~~i~~egN~F~~~~~~~~k~vt~r~~~-~~~~~~~w~w~s~Gd~~~nGa~f~~sg~~~-~~  368 (402)
                      ++||||++|..|++++++++++++|+|||++++.+..|+++++... ...++++|+|++++|+|+||++|.++|... ..
T Consensus       240 v~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~  319 (346)
T d1pxza_         240 VANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETN  319 (346)
T ss_dssp             EESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCC
T ss_pred             EECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccc
Confidence            9999999999999999999999999999999999999999988654 344689999999999999999999998764 34


Q ss_pred             CCCCCCccccCCCchHhhhhcccCCCC
Q 015702          369 SYAKASSLGARPSSLISSITAGAGSLN  395 (402)
Q Consensus       369 ~~~~~~~~~~~~~~~v~~~t~~AG~l~  395 (402)
                      .|.++++|++.|++.|++|+++||||+
T Consensus       320 ~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         320 IYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccCccccccCCHHHHHhhhccCCCCC
Confidence            588899999999999999999999995
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure