Citrus Sinensis ID: 015704
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 402 | 2.2.26 [Sep-21-2011] | |||||||
| O22285 | 694 | Probable methyltransferas | yes | no | 0.987 | 0.572 | 0.806 | 0.0 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.965 | 0.568 | 0.809 | 0.0 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.965 | 0.592 | 0.765 | 0.0 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.910 | 0.599 | 0.488 | 1e-104 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.890 | 0.588 | 0.490 | 1e-103 | |
| Q0WT31 | 770 | Probable methyltransferas | no | no | 0.932 | 0.487 | 0.471 | 1e-103 | |
| Q9SD39 | 895 | Probable methyltransferas | no | no | 0.950 | 0.426 | 0.470 | 1e-101 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.905 | 0.584 | 0.485 | 1e-101 | |
| Q8L7V3 | 829 | Probable methyltransferas | no | no | 0.932 | 0.452 | 0.465 | 1e-101 | |
| Q6NPR7 | 770 | Probable methyltransferas | no | no | 0.935 | 0.488 | 0.475 | 1e-101 |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/397 (80%), Positives = 353/397 (88%)
Query: 6 TWIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 65
T+ + +RV MD GCGVASFGAYLL R+V+TMS+APKDVHENQIQFALERG PAM AAFAT
Sbjct: 298 TFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFAT 357
Query: 66 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 125
RRL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A EE
Sbjct: 358 RRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQ 417
Query: 126 WKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDL 185
W EML+LT LCW+LVKKEGY+AIW+KP NN CYL+REAGT PPLCD D+PDNVWY +L
Sbjct: 418 WTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNL 477
Query: 186 KACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYV 245
K CI+R+PE GYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII YV
Sbjct: 478 KPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYV 537
Query: 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 305
RAL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL+GVM
Sbjct: 538 RALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVM 597
Query: 306 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDE 365
HDWCEPFDTYPRTYD LHA+GLFS+E KRC MSTI+LEMDR+LRPGG YIRDSIDVMDE
Sbjct: 598 HDWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDE 657
Query: 366 LQEIGKAMGWHVTLRETAEGPHASYRILTADKRLLHA 402
+QEI KAMGWH +LR+T+EGPHASYRILT +KRLL A
Sbjct: 658 IQEITKAMGWHTSLRDTSEGPHASYRILTCEKRLLRA 694
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/388 (80%), Positives = 350/388 (90%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
RVV+D GCGVASFGAYL+ RNV+TMSIAPKDVHENQIQFALERG PAMVAAF TRRL YP
Sbjct: 276 RVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYP 335
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
SQAFDL+HCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHE+A EE W+EML+
Sbjct: 336 SQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLN 395
Query: 132 LTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITR 191
LTTRLCW LVKKEGYIAIW+KP NN+CYL+R AG PPLC+ +D+PDNVWYVDLKACITR
Sbjct: 396 LTTRLCWVLVKKEGYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITR 455
Query: 192 LPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWK 251
+ ENGYGAN++ WP RL T PDRLQ+IQ+D++IARKELF AESKYW EII +YV ALHWK
Sbjct: 456 IEENGYGANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWK 515
Query: 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 311
++ LRNVLDMRAGFGGFAAAL E K DCWV+NV+PVSG NTLPVIYDRGL+GVMHDWCEP
Sbjct: 516 QIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEP 575
Query: 312 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK 371
FDTYPRTYDLLHAAGLFS+E KRCNM+T+MLEMDR+LRPGG VYIRD+I+V ELQEIG
Sbjct: 576 FDTYPRTYDLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGN 635
Query: 372 AMGWHVTLRETAEGPHASYRILTADKRL 399
AM WH +LRETAEGPH+SYR+L +KR
Sbjct: 636 AMRWHTSLRETAEGPHSSYRVLLCEKRF 663
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/388 (76%), Positives = 341/388 (87%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
RV +D GCGVASFGA+L+ RN T+S+APKDVHENQIQFALERG PAMVA FATRRL YP
Sbjct: 268 RVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYP 327
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
SQ+F++IHCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHE+ +E WKEMLD
Sbjct: 328 SQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLD 387
Query: 132 LTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITR 191
LT R+CWEL+KKEGYIA+W+KP NNSCY++REAGT PPLC PDD+PD+VWYVD+K CITR
Sbjct: 388 LTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITR 447
Query: 192 LPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWK 251
LP+NGYGANVS WP RL P+RLQSIQ+DA+I+RKE+ KAES++W E++ESYVR WK
Sbjct: 448 LPDNGYGANVSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRFWLEVVESYVRVFRWK 507
Query: 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 311
+ KLRNVLDMRAGFGGFAAAL + DCWVMN+VPVSGFNTLPVIYDRGL G MHDWCEP
Sbjct: 508 EFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEP 567
Query: 312 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK 371
FDTYPRTYDL+HAA LFSVE KRCN++ IMLEMDRMLRPGGHVYIRDS+ +MD+LQ++ K
Sbjct: 568 FDTYPRTYDLIHAAFLFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAK 627
Query: 372 AMGWHVTLRETAEGPHASYRILTADKRL 399
A+GW + +T EGPHAS RIL DKR+
Sbjct: 628 AIGWTAGVHDTGEGPHASVRILICDKRI 655
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 252/379 (66%), Gaps = 13/379 (3%)
Query: 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 70
LR +D GCGVASFG YLL ++TMS+AP DVH+NQIQFALERG PA + T+RLPY
Sbjct: 211 LRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY 270
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
PS++F+L HCSRCRI+W + DGILLLE++R+LR GGYFA+++ Y +E W+EM
Sbjct: 271 PSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMS 330
Query: 131 DLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACIT 190
L R+CW + K IW+KP N CYL RE GT PPLC+ D +PD V+ V+++ACIT
Sbjct: 331 ALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACIT 390
Query: 191 RLPENGY---GANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRA 247
+ ++ + G+ ++ WP RL + P RL F ++F+ +++ W + +++Y
Sbjct: 391 QYSDHDHKTKGSGLAPWPARLTSPPPRLAD-----FGYSTDIFEKDTETWRQRVDTYWDL 445
Query: 248 LHWKKMK--LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 305
L K +RN++DM+A G FAAAL E+ D WVMNVVP G NTL +IYDRGL+G +
Sbjct: 446 LSPKIQSDTVRNIMDMKASMGSFAAALKEK--DVWVMNVVPEDGPNTLKLIYDRGLMGAV 503
Query: 306 HDWCEPFDTYPRTYDLLHAAGLFSVESKR-CNMSTIMLEMDRMLRPGGHVYIRDSIDVMD 364
H WCE F TYPRTYDLLHA + S KR C+ ++LEMDR+LRP G + IRD V+D
Sbjct: 504 HSWCEAFSTYPRTYDLLHAWDIISDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVD 563
Query: 365 ELQEIGKAMGWHVTLRETA 383
+++ KA+ W +TA
Sbjct: 564 LVKKYLKALHWEAVETKTA 582
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/371 (49%), Positives = 251/371 (67%), Gaps = 13/371 (3%)
Query: 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 70
LR V D GCGVASFG YLL +++TMS+AP DVH+NQIQFALERG PA + T+RLPY
Sbjct: 208 LRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPY 267
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
PS++F+L HCSRCRI+W + DGILLLE++R+LR GGYFA+++ Y +E W+EM
Sbjct: 268 PSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMS 327
Query: 131 DLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACIT 190
L R+CW++ K IW+KP N CYL RE GT PPLC D++PD VW V+++ACIT
Sbjct: 328 ALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACIT 387
Query: 191 RLPENGY---GANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESY--V 245
++ + G+ ++ WP RL + P RL F +F+ +++ W + +++Y +
Sbjct: 388 SYSDHDHKTKGSGLAPWPARLTSPPPRLAD-----FGYSTGMFEKDTELWRQRVDTYWDL 442
Query: 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 305
+ + +RN++DM+A G FAAAL E+ D WVMNVVP G NTL +IYDRGL+G +
Sbjct: 443 LSPRIESDTVRNIMDMKASMGSFAAALKEK--DVWVMNVVPEDGPNTLKLIYDRGLMGAV 500
Query: 306 HDWCEPFDTYPRTYDLLHAAGLFS-VESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMD 364
H WCE F TYPRTYDLLHA + S ++ K C+ ++LEMDR+LRP G + IRD V+D
Sbjct: 501 HSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVD 560
Query: 365 ELQEIGKAMGW 375
+++ KA+ W
Sbjct: 561 FVKKYLKALHW 571
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/388 (47%), Positives = 252/388 (64%), Gaps = 13/388 (3%)
Query: 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 66
W RV++D GCGVASFG YL R+V+ +S APKD HE Q+QFALERG PAM+ T+
Sbjct: 361 WGNRTRVILDVGCGVASFGGYLFERDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTK 420
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126
RLP+P FDLIHC+RCR+ W + G LLLE+NR LR GG+F W+A PVY+ E W
Sbjct: 421 RLPFPGSVFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIW 480
Query: 127 KEMLDLTTRLCWELVK------KEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNV 180
K M +LT +CW+LV E AI++KPT+N CY N+ PPLC D+ +
Sbjct: 481 KAMSELTKAMCWKLVTIKKDKLNEVGAAIYQKPTSNKCY-NKRPQNEPPLCKDSDDQNAA 539
Query: 181 WYVDLKACITRLPENGYGANV---SLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYW 237
W V L+AC+ ++ E+ ++WPER+ T+P+ L S + E F A+ + W
Sbjct: 540 WNVPLEACMHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKW 599
Query: 238 NEII-ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI 296
I+ ++Y+ + +RNV+DMRA +GGFAAAL + K WVMNVVPV +TLP+I
Sbjct: 600 KTIVSKAYLNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKL--WVMNVVPVDAPDTLPII 657
Query: 297 YDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 356
Y+RGL G+ HDWCE F+TYPRTYDLLHA LFS KRCN+ ++M E+DR+LRP G I
Sbjct: 658 YERGLFGIYHDWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFII 717
Query: 357 RDSIDVMDELQEIGKAMGWHVTLRETAE 384
RD ++ + E++++ K+M W V + ++ +
Sbjct: 718 RDDMETLGEVEKMVKSMKWKVKMTQSKD 745
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/404 (47%), Positives = 260/404 (64%), Gaps = 22/404 (5%)
Query: 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 66
W + RV++D GCGVASFG +L R+VI MS+APKD HE Q+QFALER PA+ A ++
Sbjct: 492 WGKRTRVILDVGCGVASFGGFLFERDVIAMSLAPKDEHEAQVQFALERKIPAISAVMGSK 551
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126
RLP+PS+ FDLIHC+RCR+ W + G+LLLE+NRMLR GGYF W+A PVY+ E + W
Sbjct: 552 RLPFPSRVFDLIHCARCRVPWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLEEDVQIW 611
Query: 127 KEMLDLTTRLCWELV-----KKEGY-IAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNV 180
KEM LT LCWELV K G AI++KP N CY R+ PPLC +D+ +
Sbjct: 612 KEMSALTKSLCWELVTINKDKLNGIGAAIYQKPATNECYEKRKHNK-PPLCKNNDDANAA 670
Query: 181 WYVDLKACITRLPEN--GYGANVSL-WPERLRTSPDRLQSIQLDAF-IARKELFKAESKY 236
WYV L+AC+ ++P N G+ + WP RL+T P L S Q+ + F + ++
Sbjct: 671 WYVPLQACMHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEH 730
Query: 237 WNEIIES-YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPV 295
W ++ Y+ + +RNV+DMRA +GGFAAAL + WVMNVV ++ +TLP+
Sbjct: 731 WKHVVSKVYMNEIGISWSNVRNVMDMRAVYGGFAAAL--KDLQVWVMNVVNINSPDTLPI 788
Query: 296 IYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY 355
IY+RGL G+ HDWCE F TYPR+YDLLHA LFS RCN+ +M E+DR++RPGG +
Sbjct: 789 IYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLI 848
Query: 356 IRDSIDVMDELQEIGKAMGW--HVTLRETAEGPHASYRILTADK 397
+RD +V+ E++ + K++ W H+T + EG IL+A K
Sbjct: 849 VRDESNVIREVENMLKSLHWDVHLTFSKHQEG------ILSAQK 886
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/377 (48%), Positives = 254/377 (67%), Gaps = 13/377 (3%)
Query: 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 70
LR V+D GCGVASFGAYLL +++TMS+AP DVH+NQIQFALERG PA + T+RLPY
Sbjct: 216 LRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY 275
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
PS++F+ HCSRCRI+W + DG+LLLE++R+LR GGYFA+++ Y +E + WKEM
Sbjct: 276 PSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMS 335
Query: 131 DLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACIT 190
L R+CW + K +W+KP +N CYL RE GT PPLC D +PD V V ++ACIT
Sbjct: 336 ALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACIT 395
Query: 191 RLPENGY---GANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESY--V 245
++ + G+ ++ WP RL +SP RL F ++F+ +++ W + ++SY +
Sbjct: 396 PYSKHDHKTKGSGLAPWPARLTSSPPRLAD-----FGYSTDMFEKDTELWKQQVDSYWNL 450
Query: 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 305
+ K +RN++DM+A G FAAAL ++ D WVMNVV G NTL +IYDRGLIG
Sbjct: 451 MSSKVKSNTVRNIMDMKAHMGSFAAALKDK--DVWVMNVVSPDGPNTLKLIYDRGLIGTN 508
Query: 306 HDWCEPFDTYPRTYDLLHAAGLFS-VESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMD 364
H+WCE F TYPRTYDLLHA +FS ++SK C+ +++EMDR+LRP G V IRD V++
Sbjct: 509 HNWCEAFSTYPRTYDLLHAWSIFSDIKSKGCSAEDLLIEMDRILRPTGFVIIRDKQSVVE 568
Query: 365 ELQEIGKAMGWHVTLRE 381
+++ +A+ W E
Sbjct: 569 SIKKYLQALHWETVASE 585
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/389 (46%), Positives = 252/389 (64%), Gaps = 14/389 (3%)
Query: 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 66
W + RVV+D GCGVASFG +L R+VITMS+APKD HE Q+QFALERG PA+ A T
Sbjct: 419 WGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGTT 478
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126
RLP+P + FD++HC+RCR+ W + G LLLE+NR+LR GG+F W+A PVY+ + E W
Sbjct: 479 RLPFPGRVFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEIW 538
Query: 127 KEMLDLTTRLCWELVKKEG------YIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNV 180
K M +L ++CWELV +A ++KPT+N CY NR + +PP+C D+P+
Sbjct: 539 KAMSELIKKMCWELVSINKDTINGVGVATYRKPTSNECYKNR-SEPVPPICADSDDPNAS 597
Query: 181 WYVDLKACITRLPENGYGANVS---LWPERLRTSPDRLQSIQLDAF-IARKELFKAESKY 236
W V L+AC+ PE+ WP RL +P L S Q + A E F A+ ++
Sbjct: 598 WKVPLQACMHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEH 657
Query: 237 WNEII-ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPV 295
W ++ +SY+ L +RNV+DMRA +GGFAAAL + K WVMNVVP+ +TL +
Sbjct: 658 WKRVVTKSYLNGLGINWASVRNVMDMRAVYGGFAAALRDLKV--WVMNVVPIDSPDTLAI 715
Query: 296 IYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY 355
IY+RGL G+ HDWCE F TYPR+YDLLHA LFS +RCN++ ++ E+DR+LRP G +
Sbjct: 716 IYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLI 775
Query: 356 IRDSIDVMDELQEIGKAMGWHVTLRETAE 384
+RD + + +++ + KAM W V + + E
Sbjct: 776 VRDDAETIQQVEGMVKAMKWEVRMTYSKE 804
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/389 (47%), Positives = 247/389 (63%), Gaps = 13/389 (3%)
Query: 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 66
W RV++D GCGVASFG YL R+V+ +S APKD HE Q+QFALERG PAM T+
Sbjct: 361 WGNRTRVILDVGCGVASFGGYLFDRDVLALSFAPKDEHEAQVQFALERGIPAMSNVMGTK 420
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126
RLP+P FDLIHC+RCR+ W + G LLLE+NR LR GG+F W+A PVY+ E W
Sbjct: 421 RLPFPGSVFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKTEEDVGIW 480
Query: 127 KEMLDLTTRLCWEL--VKK----EGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNV 180
K M LT +CWEL +KK E AI++KP +N CY N + PPLC D+ +
Sbjct: 481 KAMSKLTKAMCWELMTIKKDELNEVGAAIYQKPMSNKCY-NERSQNEPPLCKDSDDQNAA 539
Query: 181 WYVDLKACITRLPENGYGANV---SLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYW 237
W V L+ACI ++ E+ WPER+ T P L S + +E F A+ + W
Sbjct: 540 WNVPLEACIHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERW 599
Query: 238 NEII-ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI 296
I+ +SY+ + +RNV+DMRA +GGFAAAL + K WVMNVVP+ +TLP+I
Sbjct: 600 KTIVSKSYLNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKL--WVMNVVPIDSPDTLPII 657
Query: 297 YDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 356
Y+RGL G+ HDWCE F TYPRTYDLLHA LFS KRCN+ +M E+DR+LRP G +
Sbjct: 658 YERGLFGIYHDWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIV 717
Query: 357 RDSIDVMDELQEIGKAMGWHVTLRETAEG 385
RD ++ + E++++ K+M W+V + + +G
Sbjct: 718 RDDMETIGEIEKMVKSMKWNVRMTHSKDG 746
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 402 | ||||||
| 255566464 | 673 | ATP binding protein, putative [Ricinus c | 0.967 | 0.578 | 0.843 | 0.0 | |
| 224101039 | 664 | predicted protein [Populus trichocarpa] | 0.975 | 0.590 | 0.831 | 0.0 | |
| 297827583 | 689 | dehydration-responsive family protein [A | 0.987 | 0.576 | 0.806 | 0.0 | |
| 18405149 | 694 | putative methyltransferase PMT11 [Arabid | 0.987 | 0.572 | 0.806 | 0.0 | |
| 449465844 | 678 | PREDICTED: probable methyltransferase PM | 0.972 | 0.576 | 0.818 | 0.0 | |
| 297806625 | 681 | hypothetical protein ARALYDRAFT_487406 [ | 0.965 | 0.569 | 0.809 | 0.0 | |
| 15239326 | 682 | putative methyltransferase PMT12 [Arabid | 0.965 | 0.568 | 0.809 | 0.0 | |
| 356553821 | 664 | PREDICTED: probable methyltransferase PM | 0.967 | 0.585 | 0.812 | 0.0 | |
| 356499127 | 658 | PREDICTED: probable methyltransferase PM | 0.967 | 0.591 | 0.807 | 0.0 | |
| 449476436 | 679 | PREDICTED: probable methyltransferase PM | 0.972 | 0.575 | 0.828 | 0.0 |
| >gi|255566464|ref|XP_002524217.1| ATP binding protein, putative [Ricinus communis] gi|223536494|gb|EEF38141.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/389 (84%), Positives = 356/389 (91%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
RVV+D GCGVASFGAYLL RNV+TMS+APKDVHENQIQFALERG PAMV AFAT RL YP
Sbjct: 283 RVVLDVGCGVASFGAYLLSRNVLTMSVAPKDVHENQIQFALERGVPAMVVAFATHRLLYP 342
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
SQAF++IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE EE W+EML+
Sbjct: 343 SQAFEIIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEAILEEQWEEMLN 402
Query: 132 LTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITR 191
LTTRLCW LVKKEGYIAIW+KP NNSCYL+RE GT PPLCDPDDNPDNVWYVDLKACITR
Sbjct: 403 LTTRLCWTLVKKEGYIAIWQKPINNSCYLSREEGTKPPLCDPDDNPDNVWYVDLKACITR 462
Query: 192 LPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWK 251
LPE+GYGAN++ WP RL T PDRLQSIQLDA+I+RKELFKAESKYW EII YVRA HWK
Sbjct: 463 LPEDGYGANITTWPARLHTPPDRLQSIQLDAYISRKELFKAESKYWYEIIAGYVRAWHWK 522
Query: 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 311
K KLRNVLDM+AGFGGFAAALI+Q+FDCWV+NVVP+SG NTLPVIYDRGL+GVMHDWCEP
Sbjct: 523 KFKLRNVLDMKAGFGGFAAALIDQQFDCWVLNVVPISGPNTLPVIYDRGLLGVMHDWCEP 582
Query: 312 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK 371
FDTYPRTYDLLHA GLFS+E KRC++STIMLEMDR+LRPGG YIRD++DVMDELQE K
Sbjct: 583 FDTYPRTYDLLHANGLFSIEKKRCSISTIMLEMDRILRPGGRAYIRDTLDVMDELQETAK 642
Query: 372 AMGWHVTLRETAEGPHASYRILTADKRLL 400
AMGWHV L +T+EGPHASYRILT DKRLL
Sbjct: 643 AMGWHVALHDTSEGPHASYRILTCDKRLL 671
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101039|ref|XP_002312116.1| predicted protein [Populus trichocarpa] gi|222851936|gb|EEE89483.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/392 (83%), Positives = 357/392 (91%)
Query: 9 RLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL 68
R RVV+D GCGVASFGAYLL R+V+TMSIAPKDVHENQIQFALERG PAMVAAFAT RL
Sbjct: 271 RHTRVVLDVGCGVASFGAYLLSRDVMTMSIAPKDVHENQIQFALERGVPAMVAAFATHRL 330
Query: 69 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKE 128
PYPSQAF+LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHE+ EE W+E
Sbjct: 331 PYPSQAFELIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEQVLEEQWEE 390
Query: 129 MLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKAC 188
ML+LTTRLCWELVKKEGYIAIW+KP NNSCYL+R+ G P LCD DD+PDNVWYVDLKAC
Sbjct: 391 MLNLTTRLCWELVKKEGYIAIWQKPLNNSCYLSRDTGAKPHLCDSDDDPDNVWYVDLKAC 450
Query: 189 ITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRAL 248
I+RLPENGYGANVS+WP RL T PDRLQSIQ ++FIARKEL KAE+K+W+E I YVRA
Sbjct: 451 ISRLPENGYGANVSMWPSRLHTPPDRLQSIQYESFIARKELLKAENKFWSETIAGYVRAW 510
Query: 249 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDW 308
HWKK KLRNV+DM+AGFGGFAAALIEQ FDCWV+NVVPVSG NTLPV+YDRGL+GVMHDW
Sbjct: 511 HWKKFKLRNVMDMKAGFGGFAAALIEQGFDCWVLNVVPVSGSNTLPVLYDRGLLGVMHDW 570
Query: 309 CEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQE 368
CEPFDTYPRTYDLLHAAGLFSVE KRCNMSTIMLEMDR+LRPGG YIRD++DVMDELQ+
Sbjct: 571 CEPFDTYPRTYDLLHAAGLFSVERKRCNMSTIMLEMDRILRPGGRAYIRDTLDVMDELQQ 630
Query: 369 IGKAMGWHVTLRETAEGPHASYRILTADKRLL 400
I K +GW T+R+T+EGPHASYRILT DKRLL
Sbjct: 631 IAKVVGWEATVRDTSEGPHASYRILTCDKRLL 662
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827583|ref|XP_002881674.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297327513|gb|EFH57933.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/397 (80%), Positives = 355/397 (89%)
Query: 6 TWIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 65
T+ + +RV MD GCGVASFGAYLL R+V+T+S+APKDVHENQIQFALERG PAM AAFAT
Sbjct: 293 TFGKHIRVAMDVGCGVASFGAYLLSRDVLTLSVAPKDVHENQIQFALERGVPAMAAAFAT 352
Query: 66 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 125
RRL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A EE
Sbjct: 353 RRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQ 412
Query: 126 WKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDL 185
W EML+LTT LCW+LVKKEGY+AIW+KP NN CYL+REAGT PPLCD ++PDNVWY +L
Sbjct: 413 WTEMLNLTTSLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESEDPDNVWYTNL 472
Query: 186 KACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYV 245
K CI+R+PENGYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII YV
Sbjct: 473 KPCISRIPENGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYV 532
Query: 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 305
RAL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL+GVM
Sbjct: 533 RALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVM 592
Query: 306 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDE 365
HDWCEPFDTYPRTYD LHA+GLFS+E KRC MSTI+LEMDR+LRPGG YIRDSIDVMDE
Sbjct: 593 HDWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDE 652
Query: 366 LQEIGKAMGWHVTLRETAEGPHASYRILTADKRLLHA 402
+QEI KAMGWH +LR+T+EGPHASYRILT +KRLL A
Sbjct: 653 IQEITKAMGWHTSLRDTSEGPHASYRILTCEKRLLRA 689
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18405149|ref|NP_030521.1| putative methyltransferase PMT11 [Arabidopsis thaliana] gi|75097411|sp|O22285.1|PMTB_ARATH RecName: Full=Probable methyltransferase PMT11 gi|2642157|gb|AAB87124.1| expressed protein [Arabidopsis thaliana] gi|15450749|gb|AAK96646.1| At2g39750/T5I7.5 [Arabidopsis thaliana] gi|21700885|gb|AAM70566.1| At2g39750/T5I7.5 [Arabidopsis thaliana] gi|330254624|gb|AEC09718.1| putative methyltransferase PMT11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/397 (80%), Positives = 353/397 (88%)
Query: 6 TWIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 65
T+ + +RV MD GCGVASFGAYLL R+V+TMS+APKDVHENQIQFALERG PAM AAFAT
Sbjct: 298 TFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFAT 357
Query: 66 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 125
RRL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A EE
Sbjct: 358 RRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQ 417
Query: 126 WKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDL 185
W EML+LT LCW+LVKKEGY+AIW+KP NN CYL+REAGT PPLCD D+PDNVWY +L
Sbjct: 418 WTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNL 477
Query: 186 KACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYV 245
K CI+R+PE GYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII YV
Sbjct: 478 KPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYV 537
Query: 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 305
RAL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL+GVM
Sbjct: 538 RALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVM 597
Query: 306 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDE 365
HDWCEPFDTYPRTYD LHA+GLFS+E KRC MSTI+LEMDR+LRPGG YIRDSIDVMDE
Sbjct: 598 HDWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDE 657
Query: 366 LQEIGKAMGWHVTLRETAEGPHASYRILTADKRLLHA 402
+QEI KAMGWH +LR+T+EGPHASYRILT +KRLL A
Sbjct: 658 IQEITKAMGWHTSLRDTSEGPHASYRILTCEKRLLRA 694
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465844|ref|XP_004150637.1| PREDICTED: probable methyltransferase PMT11-like [Cucumis sativus] gi|449516433|ref|XP_004165251.1| PREDICTED: probable methyltransferase PMT11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/391 (81%), Positives = 355/391 (90%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
RVV+D GCGVASFGAYLL RNV+TMSIAPKDVHENQIQFALERG PAMVAAF+TRRL YP
Sbjct: 288 RVVLDIGCGVASFGAYLLSRNVVTMSIAPKDVHENQIQFALERGVPAMVAAFSTRRLLYP 347
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
SQAFDLIHCSRCRINWTRDDG+LLLEV+RMLRAGGYFAWAAQPVYKHEEA E+ W+EM++
Sbjct: 348 SQAFDLIHCSRCRINWTRDDGVLLLEVDRMLRAGGYFAWAAQPVYKHEEALEQQWEEMIN 407
Query: 132 LTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITR 191
LTTRLCW+ VKK+GYIAIW+KP NNSCYL R+A PPLCD DD+PD VWYV LK CITR
Sbjct: 408 LTTRLCWKFVKKDGYIAIWQKPMNNSCYLTRDAEVKPPLCDIDDDPDKVWYVKLKPCITR 467
Query: 192 LPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWK 251
LPENG+G NV+ WP RL+T PDRLQSIQ DA+I+R ELF AESKYWNEII SYVRALHWK
Sbjct: 468 LPENGFGRNVTKWPARLQTPPDRLQSIQYDAYISRNELFTAESKYWNEIIGSYVRALHWK 527
Query: 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 311
K++LRNV+DMRAGFGGFAAALI+ K D WVMNVVPVSG NTLPVIYDRGL+GV+HDWCEP
Sbjct: 528 KIRLRNVMDMRAGFGGFAAALIDHKLDSWVMNVVPVSGPNTLPVIYDRGLLGVLHDWCEP 587
Query: 312 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK 371
FDTYPRTYDLLHAAGLFSVE +RC+MSTIMLEMDR+LRPGG VY+RD++ VMDELQ IGK
Sbjct: 588 FDTYPRTYDLLHAAGLFSVEMRRCSMSTIMLEMDRILRPGGRVYVRDTVAVMDELQAIGK 647
Query: 372 AMGWHVTLRETAEGPHASYRILTADKRLLHA 402
AMGW V+LR+T+EGPHASYRIL +KRLLH
Sbjct: 648 AMGWRVSLRDTSEGPHASYRILIGEKRLLHT 678
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806625|ref|XP_002871196.1| hypothetical protein ARALYDRAFT_487406 [Arabidopsis lyrata subsp. lyrata] gi|297317033|gb|EFH47455.1| hypothetical protein ARALYDRAFT_487406 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/388 (80%), Positives = 352/388 (90%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
RVV+D GCGVASFGAYL+ RNV+TMSIAPKDVHENQIQFALERG PAMVAAF TRRL YP
Sbjct: 275 RVVLDIGCGVASFGAYLISRNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYP 334
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
SQAFDL+HCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHE+A EE W+EML+
Sbjct: 335 SQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLN 394
Query: 132 LTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITR 191
LTTRLCW LVKKEGYIAIW+KP NN+ YL+R AG PPLC+ +D+PDNVWYVDLKACITR
Sbjct: 395 LTTRLCWVLVKKEGYIAIWQKPVNNTRYLSRGAGLTPPLCNSEDDPDNVWYVDLKACITR 454
Query: 192 LPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWK 251
+ ENGYGAN++ WP RL+T PDRLQ+IQ+D+++ARKELF AESKYW EII +YV ALHWK
Sbjct: 455 IEENGYGANLAPWPARLQTPPDRLQTIQIDSYVARKELFVAESKYWKEIISNYVNALHWK 514
Query: 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 311
++ LRNVLDMRAGFGGFAAAL E K DCWV+NV+PVSG NTLPVIYDRGL+GVMHDWCEP
Sbjct: 515 QIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEP 574
Query: 312 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK 371
FDTYPR+YDLLHAAGLFS+E KRCNM+T+MLEMDR+LRPGG VYIRD+I+VM ELQEIG
Sbjct: 575 FDTYPRSYDLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVMSELQEIGN 634
Query: 372 AMGWHVTLRETAEGPHASYRILTADKRL 399
AM WH +LRETAEGPHASYR+L +KRL
Sbjct: 635 AMRWHTSLRETAEGPHASYRVLVCEKRL 662
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239326|ref|NP_196224.1| putative methyltransferase PMT12 [Arabidopsis thaliana] gi|75262411|sp|Q9FG39.1|PMTC_ARATH RecName: Full=Probable methyltransferase PMT12 gi|10257485|dbj|BAB10206.1| ankyrin-like protein [Arabidopsis thaliana] gi|51536506|gb|AAU05491.1| At5g06050 [Arabidopsis thaliana] gi|58652086|gb|AAW80868.1| At5g06050 [Arabidopsis thaliana] gi|110740549|dbj|BAE98380.1| ankyrin like protein [Arabidopsis thaliana] gi|332003576|gb|AED90959.1| putative methyltransferase PMT12 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/388 (80%), Positives = 350/388 (90%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
RVV+D GCGVASFGAYL+ RNV+TMSIAPKDVHENQIQFALERG PAMVAAF TRRL YP
Sbjct: 276 RVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYP 335
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
SQAFDL+HCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHE+A EE W+EML+
Sbjct: 336 SQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLN 395
Query: 132 LTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITR 191
LTTRLCW LVKKEGYIAIW+KP NN+CYL+R AG PPLC+ +D+PDNVWYVDLKACITR
Sbjct: 396 LTTRLCWVLVKKEGYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITR 455
Query: 192 LPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWK 251
+ ENGYGAN++ WP RL T PDRLQ+IQ+D++IARKELF AESKYW EII +YV ALHWK
Sbjct: 456 IEENGYGANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWK 515
Query: 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 311
++ LRNVLDMRAGFGGFAAAL E K DCWV+NV+PVSG NTLPVIYDRGL+GVMHDWCEP
Sbjct: 516 QIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEP 575
Query: 312 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK 371
FDTYPRTYDLLHAAGLFS+E KRCNM+T+MLEMDR+LRPGG VYIRD+I+V ELQEIG
Sbjct: 576 FDTYPRTYDLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGN 635
Query: 372 AMGWHVTLRETAEGPHASYRILTADKRL 399
AM WH +LRETAEGPH+SYR+L +KR
Sbjct: 636 AMRWHTSLRETAEGPHSSYRVLLCEKRF 663
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553821|ref|XP_003545250.1| PREDICTED: probable methyltransferase PMT11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/389 (81%), Positives = 350/389 (89%)
Query: 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 70
+RV +D GCGVASFGAYLL RNVITMS+APKDVHENQIQFALERG PAMVAA+AT+RL Y
Sbjct: 275 IRVALDVGCGVASFGAYLLSRNVITMSVAPKDVHENQIQFALERGVPAMVAAYATKRLLY 334
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHEE EE WKEML
Sbjct: 335 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEEVLEEQWKEML 394
Query: 131 DLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACIT 190
+LTTRLCW+L+KK+GY+AIW+KP+ NSCYLNREA T PPLCD D+PDNVWYV+LK CI+
Sbjct: 395 NLTTRLCWKLLKKDGYVAIWQKPSENSCYLNREARTQPPLCDQSDDPDNVWYVNLKPCIS 454
Query: 191 RLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHW 250
+LPENGYGANV+ WP RL T PDRLQSI+ DAFI+R ELF+AESKYW+EII YVRAL W
Sbjct: 455 QLPENGYGANVARWPVRLHTPPDRLQSIKFDAFISRNELFRAESKYWHEIIGGYVRALRW 514
Query: 251 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCE 310
KKM+LRNV+DMRAGFGGFAAALI+Q D WVMNVVP+SG NTLPVIYDRGLIGVMHDWCE
Sbjct: 515 KKMRLRNVMDMRAGFGGFAAALIDQSMDSWVMNVVPISGPNTLPVIYDRGLIGVMHDWCE 574
Query: 311 PFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIG 370
PFDTYPRTYDLLHAA L SVE KRCN+S+IMLEMDR+LRPGG YIRD++ +MDEL EIG
Sbjct: 575 PFDTYPRTYDLLHAANLLSVEKKRCNLSSIMLEMDRILRPGGRAYIRDTLAIMDELIEIG 634
Query: 371 KAMGWHVTLRETAEGPHASYRILTADKRL 399
KAMGW V+LR+TAEGPHASYR+L DK L
Sbjct: 635 KAMGWQVSLRDTAEGPHASYRVLVCDKHL 663
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499127|ref|XP_003518394.1| PREDICTED: probable methyltransferase PMT11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/389 (80%), Positives = 349/389 (89%)
Query: 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 70
+RV +D GCGVASFGAYLL RNVITMS+APKDVHENQIQFALERG PAMVAAF+TR L Y
Sbjct: 269 IRVALDVGCGVASFGAYLLSRNVITMSVAPKDVHENQIQFALERGVPAMVAAFSTRCLLY 328
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHEE EE WKEML
Sbjct: 329 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEEVLEEQWKEML 388
Query: 131 DLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACIT 190
+LT RLCW+L+KK+GY+AIW+KP++NSCYLNREAGT PPLCDP D+ DNVWYV+LK+CI+
Sbjct: 389 NLTNRLCWKLLKKDGYVAIWQKPSDNSCYLNREAGTQPPLCDPSDDLDNVWYVNLKSCIS 448
Query: 191 RLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHW 250
+LPENGYGANV+ WP RL T PDRLQSI+ DAFI+R ELF+AESKYW EII YVR L W
Sbjct: 449 QLPENGYGANVARWPARLHTPPDRLQSIKFDAFISRNELFRAESKYWGEIIGGYVRVLRW 508
Query: 251 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCE 310
KKM+LRNV+DMRAGFGGFAAALI+Q D WVMNVVPVSG NTLPVIYDRGLIGVMHDWCE
Sbjct: 509 KKMRLRNVMDMRAGFGGFAAALIDQSMDSWVMNVVPVSGPNTLPVIYDRGLIGVMHDWCE 568
Query: 311 PFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIG 370
PFDTYPRTYDLLHAA L SVE KRCN+S+IMLEMDR+LRPGG YIRD++ +MDEL EIG
Sbjct: 569 PFDTYPRTYDLLHAANLLSVEKKRCNLSSIMLEMDRILRPGGRAYIRDTLAIMDELMEIG 628
Query: 371 KAMGWHVTLRETAEGPHASYRILTADKRL 399
KAMGW ++L++TAEGP ASYR+L DKRL
Sbjct: 629 KAMGWQMSLQDTAEGPRASYRVLVCDKRL 657
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449476436|ref|XP_004154736.1| PREDICTED: probable methyltransferase PMT11-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/391 (82%), Positives = 354/391 (90%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
RVV+D GCGVASFGAYLL RNVITMSIAPKDVHENQIQFALERG PAMV+AFAT RL YP
Sbjct: 289 RVVLDIGCGVASFGAYLLSRNVITMSIAPKDVHENQIQFALERGVPAMVSAFATHRLLYP 348
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE EE W+EML+
Sbjct: 349 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEVLEEQWEEMLN 408
Query: 132 LTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACITR 191
LTTRLCWE VKK+GYIAIW+KP NNSCYLNREA T PPLCD +D+PD VW V+LK CI+R
Sbjct: 409 LTTRLCWEFVKKDGYIAIWRKPLNNSCYLNREAATKPPLCDQNDDPDRVWNVNLKPCISR 468
Query: 192 LPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWK 251
LPE+G+G N+S WP RL T P RLQ+IQ DA+I+R ELFKAESKYWNEII+SYVRA HWK
Sbjct: 469 LPEDGFGGNISDWPARLHTPPGRLQTIQYDAYISRNELFKAESKYWNEIIDSYVRAFHWK 528
Query: 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 311
+LRNV+DM+AGFGGFAAALI+ K DCWV+NVVPVSG NTLPVIYDRGLIGVMHDWCEP
Sbjct: 529 SFRLRNVMDMKAGFGGFAAALIDLKLDCWVLNVVPVSGSNTLPVIYDRGLIGVMHDWCEP 588
Query: 312 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK 371
FDTYPRTYDLLHAAGLFSVE KRCNMSTIMLEMDR+LRPGG VYIRDS+ VMDELQ+IGK
Sbjct: 589 FDTYPRTYDLLHAAGLFSVERKRCNMSTIMLEMDRILRPGGRVYIRDSVAVMDELQDIGK 648
Query: 372 AMGWHVTLRETAEGPHASYRILTADKRLLHA 402
AMGWHV +R+T+EGPHASY+I+ ADK LL A
Sbjct: 649 AMGWHVNVRDTSEGPHASYKIMMADKILLKA 679
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 402 | ||||||
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.987 | 0.572 | 0.783 | 1.8e-174 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.962 | 0.567 | 0.790 | 2.4e-172 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.965 | 0.592 | 0.742 | 2.6e-166 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.902 | 0.582 | 0.478 | 6.3e-92 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.950 | 0.625 | 0.463 | 8.1e-92 | |
| TAIR|locus:2040864 | 770 | AT2G34300 [Arabidopsis thalian | 0.932 | 0.487 | 0.466 | 1.7e-91 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.890 | 0.588 | 0.474 | 2.1e-91 | |
| TAIR|locus:2080823 | 895 | AT3G51070 [Arabidopsis thalian | 0.932 | 0.418 | 0.463 | 5.7e-91 | |
| TAIR|locus:2160806 | 829 | AT5G64030 [Arabidopsis thalian | 0.932 | 0.452 | 0.460 | 2.5e-90 | |
| TAIR|locus:2013628 | 770 | AT1G29470 [Arabidopsis thalian | 0.935 | 0.488 | 0.465 | 8.3e-90 |
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1695 (601.7 bits), Expect = 1.8e-174, P = 1.8e-174
Identities = 311/397 (78%), Positives = 343/397 (86%)
Query: 6 TWIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT 65
T+ + +RV MD GCGVASFGAYLL R+V+TMS+APKDVHENQIQFALERG PAM AAFAT
Sbjct: 298 TFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQIQFALERGVPAMAAAFAT 357
Query: 66 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 125
RRL YPSQAFDLIHCSRCRINWTRDDGILLLE+NRMLRAGGYFAWAAQPVYKHE A EE
Sbjct: 358 RRLLYPSQAFDLIHCSRCRINWTRDDGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQ 417
Query: 126 WKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDL 185
W EML+LT LCW+LVKKEGY+AIW+KP NN CYL+REAGT VWY +L
Sbjct: 418 WTEMLNLTISLCWKLVKKEGYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNL 477
Query: 186 KACITRLPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYV 245
K CI+R+PE GYG NV LWP RL T PDRLQ+I+ D++IARKELFKAESKYWNEII YV
Sbjct: 478 KPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYV 537
Query: 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 305
RAL WKKMKLRNVLDMRAGFGGFAAAL + K DCWV++VVPVSG NTLPVIYDRGL+GVM
Sbjct: 538 RALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVM 597
Query: 306 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDE 365
HDWCEPFDTYPRTYD LHA+GLFS+E KRC MSTI+LEMDR+LRPGG YIRDSIDVMDE
Sbjct: 598 HDWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDE 657
Query: 366 LQEIGKAMGWHVTLRETAEGPHASYRILTADKRLLHA 402
+QEI KAMGWH +LR+T+EGPHASYRILT +KRLL A
Sbjct: 658 IQEITKAMGWHTSLRDTSEGPHASYRILTCEKRLLRA 694
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1675 (594.7 bits), Expect = 2.4e-172, P = 2.4e-172
Identities = 306/387 (79%), Positives = 339/387 (87%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
RVV+D GCGVASFGAYL+ RNV+TMSIAPKDVHENQIQFALERG PAMVAAF TRRL YP
Sbjct: 276 RVVLDIGCGVASFGAYLMSRNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYP 335
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
SQAFDL+HCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHE+A EE W+EML+
Sbjct: 336 SQAFDLVHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLN 395
Query: 132 LTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITR 191
LTTRLCW LVKKEGYIAIW+KP NN+CYL+R AG VWYVDLKACITR
Sbjct: 396 LTTRLCWVLVKKEGYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITR 455
Query: 192 LPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWK 251
+ ENGYGAN++ WP RL T PDRLQ+IQ+D++IARKELF AESKYW EII +YV ALHWK
Sbjct: 456 IEENGYGANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWK 515
Query: 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 311
++ LRNVLDMRAGFGGFAAAL E K DCWV+NV+PVSG NTLPVIYDRGL+GVMHDWCEP
Sbjct: 516 QIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEP 575
Query: 312 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK 371
FDTYPRTYDLLHAAGLFS+E KRCNM+T+MLEMDR+LRPGG VYIRD+I+V ELQEIG
Sbjct: 576 FDTYPRTYDLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGN 635
Query: 372 AMGWHVTLRETAEGPHASYRILTADKR 398
AM WH +LRETAEGPH+SYR+L +KR
Sbjct: 636 AMRWHTSLRETAEGPHSSYRVLLCEKR 662
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1618 (574.6 bits), Expect = 2.6e-166, P = 2.6e-166
Identities = 288/388 (74%), Positives = 330/388 (85%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
RV +D GCGVASFGA+L+ RN T+S+APKDVHENQIQFALERG PAMVA FATRRL YP
Sbjct: 268 RVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAMVAVFATRRLLYP 327
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
SQ+F++IHCSRCRINWTRDDGILLLEVNRMLRAGGYF WAAQPVYKHE+ +E WKEMLD
Sbjct: 328 SQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEDNLQEQWKEMLD 387
Query: 132 LTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACITR 191
LT R+CWEL+KKEGYIA+W+KP NNSCY++REAGT VWYVD+K CITR
Sbjct: 388 LTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWYVDMKPCITR 447
Query: 192 LPENGYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWK 251
LP+NGYGANVS WP RL P+RLQSIQ+DA+I+RKE+ KAES++W E++ESYVR WK
Sbjct: 448 LPDNGYGANVSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRFWLEVVESYVRVFRWK 507
Query: 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEP 311
+ KLRNVLDMRAGFGGFAAAL + DCWVMN+VPVSGFNTLPVIYDRGL G MHDWCEP
Sbjct: 508 EFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDRGLQGAMHDWCEP 567
Query: 312 FDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK 371
FDTYPRTYDL+HAA LFSVE KRCN++ IMLEMDRMLRPGGHVYIRDS+ +MD+LQ++ K
Sbjct: 568 FDTYPRTYDLIHAAFLFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDSLSLMDQLQQVAK 627
Query: 372 AMGWHVTLRETAEGPHASYRILTADKRL 399
A+GW + +T EGPHAS RIL DKR+
Sbjct: 628 AIGWTAGVHDTGEGPHASVRILICDKRI 655
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 181/378 (47%), Positives = 244/378 (64%)
Query: 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 70
LR V+D GCGVASFGAYLL +++TMS+AP DVH+NQIQFALERG PA + T+RLPY
Sbjct: 216 LRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY 275
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
PS++F+ HCSRCRI+W + DG+LLLE++R+LR GGYFA+++ Y +E + WKEM
Sbjct: 276 PSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSSPEAYAQDEENLKIWKEMS 335
Query: 131 DLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACIT 190
L R+CW + K +W+KP +N CYL RE GT V V ++ACIT
Sbjct: 336 ALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQPPLCRSDADPDAVAGVSMEACIT 395
Query: 191 RLPENGY---GANVSLWPERLRTSPDRLQSI--QLDAFIARKELFKAE-SKYWNEIIESY 244
++ + G+ ++ WP RL +SP RL D F EL+K + YWN ++ S
Sbjct: 396 PYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMFEKDTELWKQQVDSYWN-LMSSK 454
Query: 245 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGV 304
V K +RN++DM+A G FAAAL ++ D WVMNVV G NTL +IYDRGLIG
Sbjct: 455 V-----KSNTVRNIMDMKAHMGSFAAALKDK--DVWVMNVVSPDGPNTLKLIYDRGLIGT 507
Query: 305 MHDWCEPFDTYPRTYDLLHAAGLFS-VESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVM 363
H+WCE F TYPRTYDLLHA +FS ++SK C+ +++EMDR+LRP G V IRD V+
Sbjct: 508 NHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGCSAEDLLIEMDRILRPTGFVIIRDKQSVV 567
Query: 364 DELQEIGKAMGWHVTLRE 381
+ +++ +A+ W E
Sbjct: 568 ESIKKYLQALHWETVASE 585
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 184/397 (46%), Positives = 250/397 (62%)
Query: 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 70
LR +D GCGVASFG YLL ++TMS+AP DVH+NQIQFALERG PA + T+RLPY
Sbjct: 211 LRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPY 270
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
PS++F+L HCSRCRI+W + DGILLLE++R+LR GGYFA+++ Y +E W+EM
Sbjct: 271 PSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMS 330
Query: 131 DLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACIT 190
L R+CW + K IW+KP N CYL RE GT V+ V+++ACIT
Sbjct: 331 ALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDAVYGVNMEACIT 390
Query: 191 RLPENGY---GANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRA 247
+ ++ + G+ ++ WP RL + P RL F ++F+ +++ W + +++Y
Sbjct: 391 QYSDHDHKTKGSGLAPWPARLTSPPPRLAD-----FGYSTDIFEKDTETWRQRVDTYWDL 445
Query: 248 LHWKKMK--LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 305
L K +RN++DM+A G FAAAL E+ D WVMNVVP G NTL +IYDRGL+G +
Sbjct: 446 LSPKIQSDTVRNIMDMKASMGSFAAALKEK--DVWVMNVVPEDGPNTLKLIYDRGLMGAV 503
Query: 306 HDWCEPFDTYPRTYDLLHAAGLFSVESKR-CNMSTIMLEMDRMLRPGGHVYIRDSIDVMD 364
H WCE F TYPRTYDLLHA + S KR C+ ++LEMDR+LRP G + IRD V+D
Sbjct: 504 HSWCEAFSTYPRTYDLLHAWDIISDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQSVVD 563
Query: 365 ELQEIGKAMGWHVTLRETA-EGPHASYR-ILTADKRL 399
+++ KA+ W +TA E S IL K+L
Sbjct: 564 LVKKYLKALHWEAVETKTASESDQDSDNVILIVQKKL 600
|
|
| TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 181/388 (46%), Positives = 249/388 (64%)
Query: 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 66
W RV++D GCGVASFG YL R+V+ +S APKD HE Q+QFALERG PAM+ T+
Sbjct: 361 WGNRTRVILDVGCGVASFGGYLFERDVLALSFAPKDEHEAQVQFALERGIPAMLNVMGTK 420
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126
RLP+P FDLIHC+RCR+ W + G LLLE+NR LR GG+F W+A PVY+ E W
Sbjct: 421 RLPFPGSVFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKNEEDSGIW 480
Query: 127 KEMLDLTTRLCWELV--KKEGY----IAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXV 180
K M +LT +CW+LV KK+ AI++KPT+N CY N+
Sbjct: 481 KAMSELTKAMCWKLVTIKKDKLNEVGAAIYQKPTSNKCY-NKRPQNEPPLCKDSDDQNAA 539
Query: 181 WYVDLKACITRLPENGY--GAN-VSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYW 237
W V L+AC+ ++ E+ GA ++WPER+ T+P+ L S + E F A+ + W
Sbjct: 540 WNVPLEACMHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKW 599
Query: 238 NEII-ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI 296
I+ ++Y+ + +RNV+DMRA +GGFAAAL + K WVMNVVPV +TLP+I
Sbjct: 600 KTIVSKAYLNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKL--WVMNVVPVDAPDTLPII 657
Query: 297 YDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 356
Y+RGL G+ HDWCE F+TYPRTYDLLHA LFS KRCN+ ++M E+DR+LRP G I
Sbjct: 658 YERGLFGIYHDWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFII 717
Query: 357 RDSIDVMDELQEIGKAMGWHVTLRETAE 384
RD ++ + E++++ K+M W V + ++ +
Sbjct: 718 RDDMETLGEVEKMVKSMKWKVKMTQSKD 745
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 176/371 (47%), Positives = 241/371 (64%)
Query: 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 70
LR V D GCGVASFG YLL +++TMS+AP DVH+NQIQFALERG PA + T+RLPY
Sbjct: 208 LRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPASLGVLGTKRLPY 267
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
PS++F+L HCSRCRI+W + DGILLLE++R+LR GGYFA+++ Y +E W+EM
Sbjct: 268 PSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWREMS 327
Query: 131 DLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXVWYVDLKACIT 190
L R+CW++ K IW+KP N CYL RE GT VW V+++ACIT
Sbjct: 328 ALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGVNMEACIT 387
Query: 191 RLPENGY---GANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRA 247
++ + G+ ++ WP RL + P RL F +F+ +++ W + +++Y
Sbjct: 388 SYSDHDHKTKGSGLAPWPARLTSPPPRLAD-----FGYSTGMFEKDTELWRQRVDTYWDL 442
Query: 248 L--HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM 305
L + +RN++DM+A G FAAAL E+ D WVMNVVP G NTL +IYDRGL+G +
Sbjct: 443 LSPRIESDTVRNIMDMKASMGSFAAALKEK--DVWVMNVVPEDGPNTLKLIYDRGLMGAV 500
Query: 306 HDWCEPFDTYPRTYDLLHAAGLFS-VESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMD 364
H WCE F TYPRTYDLLHA + S ++ K C+ ++LEMDR+LRP G + IRD V+D
Sbjct: 501 HSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVVD 560
Query: 365 ELQEIGKAMGW 375
+++ KA+ W
Sbjct: 561 FVKKYLKALHW 571
|
|
| TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 182/393 (46%), Positives = 250/393 (63%)
Query: 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 66
W + RV++D GCGVASFG +L R+VI MS+APKD HE Q+QFALER PA+ A ++
Sbjct: 492 WGKRTRVILDVGCGVASFGGFLFERDVIAMSLAPKDEHEAQVQFALERKIPAISAVMGSK 551
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126
RLP+PS+ FDLIHC+RCR+ W + G+LLLE+NRMLR GGYF W+A PVY+ E + W
Sbjct: 552 RLPFPSRVFDLIHCARCRVPWHNEGGMLLLELNRMLRPGGYFVWSATPVYQKLEEDVQIW 611
Query: 127 KEMLDLTTRLCWELV-----KKEGY-IAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXV 180
KEM LT LCWELV K G AI++KP N CY R+
Sbjct: 612 KEMSALTKSLCWELVTINKDKLNGIGAAIYQKPATNECYEKRKHNK-PPLCKNNDDANAA 670
Query: 181 WYVDLKACITRLPENGY--GANVSL-WPERLRTSPDRLQSIQLDAF--IARKELFKAESK 235
WYV L+AC+ ++P N G+ + WP RL+T P L S Q+ + A ++ F + +
Sbjct: 671 WYVPLQACMHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRD-FTTDYE 729
Query: 236 YWNEIIES-YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLP 294
+W ++ Y+ + +RNV+DMRA +GGFAAAL + WVMNVV ++ +TLP
Sbjct: 730 HWKHVVSKVYMNEIGISWSNVRNVMDMRAVYGGFAAAL--KDLQVWVMNVVNINSPDTLP 787
Query: 295 VIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHV 354
+IY+RGL G+ HDWCE F TYPR+YDLLHA LFS RCN+ +M E+DR++RPGG +
Sbjct: 788 IIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKL 847
Query: 355 YIRDSIDVMDELQEIGKAMGW--HVTLRETAEG 385
+RD +V+ E++ + K++ W H+T + EG
Sbjct: 848 IVRDESNVIREVENMLKSLHWDVHLTFSKHQEG 880
|
|
| TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 179/389 (46%), Positives = 248/389 (63%)
Query: 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 66
W + RVV+D GCGVASFG +L R+VITMS+APKD HE Q+QFALERG PA+ A T
Sbjct: 419 WGKRSRVVLDVGCGVASFGGFLFDRDVITMSLAPKDEHEAQVQFALERGIPAISAVMGTT 478
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126
RLP+P + FD++HC+RCR+ W + G LLLE+NR+LR GG+F W+A PVY+ + E W
Sbjct: 479 RLPFPGRVFDIVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKKTEDVEIW 538
Query: 127 KEMLDLTTRLCWELVK--KE---GY-IAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXV 180
K M +L ++CWELV K+ G +A ++KPT+N CY NR +
Sbjct: 539 KAMSELIKKMCWELVSINKDTINGVGVATYRKPTSNECYKNRSE-PVPPICADSDDPNAS 597
Query: 181 WYVDLKACITRLPENGY--GAN-VSLWPERLRTSPDRLQSIQLDAF-IARKELFKAESKY 236
W V L+AC+ PE+ G+ WP RL +P L S Q + A E F A+ ++
Sbjct: 598 WKVPLQACMHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEH 657
Query: 237 WNEII-ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPV 295
W ++ +SY+ L +RNV+DMRA +GGFAAAL + K WVMNVVP+ +TL +
Sbjct: 658 WKRVVTKSYLNGLGINWASVRNVMDMRAVYGGFAAALRDLKV--WVMNVVPIDSPDTLAI 715
Query: 296 IYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY 355
IY+RGL G+ HDWCE F TYPR+YDLLHA LFS +RCN++ ++ E+DR+LRP G +
Sbjct: 716 IYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLI 775
Query: 356 IRDSIDVMDELQEIGKAMGWHVTLRETAE 384
+RD + + +++ + KAM W V + + E
Sbjct: 776 VRDDAETIQQVEGMVKAMKWEVRMTYSKE 804
|
|
| TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 181/389 (46%), Positives = 242/389 (62%)
Query: 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATR 66
W RV++D GCGVASFG YL R+V+ +S APKD HE Q+QFALERG PAM T+
Sbjct: 361 WGNRTRVILDVGCGVASFGGYLFDRDVLALSFAPKDEHEAQVQFALERGIPAMSNVMGTK 420
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126
RLP+P FDLIHC+RCR+ W + G LLLE+NR LR GG+F W+A PVY+ E W
Sbjct: 421 RLPFPGSVFDLIHCARCRVPWHIEGGKLLLELNRALRPGGFFVWSATPVYRKTEEDVGIW 480
Query: 127 KEMLDLTTRLCWEL--VKKEGY----IAIWKKPTNNSCYLNREAGTIXXXXXXXXXXXXV 180
K M LT +CWEL +KK+ AI++KP +N CY N +
Sbjct: 481 KAMSKLTKAMCWELMTIKKDELNEVGAAIYQKPMSNKCY-NERSQNEPPLCKDSDDQNAA 539
Query: 181 WYVDLKACITRLPENGY--GAN-VSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYW 237
W V L+ACI ++ E+ GA WPER+ T P L S + +E F A+ + W
Sbjct: 540 WNVPLEACIHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERW 599
Query: 238 NEII-ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI 296
I+ +SY+ + +RNV+DMRA +GGFAAAL + K WVMNVVP+ +TLP+I
Sbjct: 600 KTIVSKSYLNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKL--WVMNVVPIDSPDTLPII 657
Query: 297 YDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 356
Y+RGL G+ HDWCE F TYPRTYDLLHA LFS KRCN+ +M E+DR+LRP G +
Sbjct: 658 YERGLFGIYHDWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIV 717
Query: 357 RDSIDVMDELQEIGKAMGWHVTLRETAEG 385
RD ++ + E++++ K+M W+V + + +G
Sbjct: 718 RDDMETIGEIEKMVKSMKWNVRMTHSKDG 746
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O22285 | PMTB_ARATH | 2, ., 1, ., 1, ., - | 0.8060 | 0.9875 | 0.5720 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 402 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-08 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 6e-06 | |
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 9e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.002 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 662 bits (1710), Expect = 0.0
Identities = 230/393 (58%), Positives = 276/393 (70%), Gaps = 10/393 (2%)
Query: 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY 70
+R +D GCGVASFGAYLL R+V+TMS APKDVHE Q+QFALERG PAM+ TRRLPY
Sbjct: 118 VRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPY 177
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVY-KHEEAQEEHWKEM 129
PS++FD+ HCSRC I W +DGILLLEV+R+LR GGYF + PVY + EE +E WK M
Sbjct: 178 PSRSFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAM 237
Query: 130 LDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAGTIPPLCDPDDNPDNVWYVDLKACI 189
L LCW+LV K+G IAIW+KP NNSCY RE G PPLC D+PD WYV ++ACI
Sbjct: 238 EALAKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACI 297
Query: 190 TRLPEN---GYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVR 246
T LPE G + WPERL P RL S Q E FKA+++ W + Y R
Sbjct: 298 TPLPEVSHEVGGGWLEKWPERLTAVPPRLASGQ--IGGVSAEAFKADTELWKRRVSKYKR 355
Query: 247 ALH--WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGV 304
L K ++RNV+DM AGFGGFAAALI+ WVMNVVPV +TLPVIYDRGLIG+
Sbjct: 356 LLKLLIDKGRVRNVMDMNAGFGGFAAALIDDP--VWVMNVVPVDSPDTLPVIYDRGLIGI 413
Query: 305 MHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMD 364
HDWCEPF TYPRTYDLLHA LFS+ KRCN+ I+LEMDR+LRPGG V IRD +DV+D
Sbjct: 414 YHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDVDVLD 473
Query: 365 ELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397
++++I KAM W V + +T +GPH +IL A K
Sbjct: 474 KVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-08
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 16 DAGCGVASFGAYLLPRNVIT-MSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQA 74
D GCG L R + D+ + A +R V A LP+P ++
Sbjct: 2 DVGCGTGLLAEALARRGGARVTGV---DLSPEMLALARKRAPRKFVVGDAED-LPFPDES 57
Query: 75 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 109
FD++ S ++ D L E+ R+L+ GG
Sbjct: 58 FDVVVSSLV-LHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 6e-06
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 15 MDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALER------GAPAMVAAFATRRL 68
+D GCG + LL D+ ++ A ER V +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTG-VDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59
Query: 69 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYF 108
+FD++ S ++ D +L + R+L+ GG
Sbjct: 60 DLDPGSFDVVVASNV-LHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 34/152 (22%)
Query: 239 EIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGF-NTLPVIY 297
+ + + + W ++R LD+ G F A L+ + D M+ P +
Sbjct: 103 DFLAQMIPDIAWGG-RVRTALDVGCGVASFGAYLLSR--DVLTMSFAPKDVHEAQVQFAL 159
Query: 298 DRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC------NMSTIMLEMDRML 348
+RG+ +GV+ P+ + R++D+ H + RC N ++LE+DR+L
Sbjct: 160 ERGVPAMLGVLGTRRLPYPS--RSFDMAHCS--------RCLIPWHANDGILLLEVDRVL 209
Query: 349 RPGGH-------VYIRDSIDVMDELQEIGKAM 373
RPGG+ VY RD ++LQE KAM
Sbjct: 210 RPGGYFVLSGPPVYARD----EEDLQEEWKAM 237
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.002
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAP------AMVAAFATRR 67
++D GCG L +++ D+ + ++ A ER +VA R
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGV--DISKEALELAKERLRDKGPKVRFVVADA--RD 56
Query: 68 LPYPSQAFDLIHCSRCRIN-WTRDDGILLL-EVNRMLRAGG 106
LP+ +FDL+ C+ ++ + LL E R+LR GG
Sbjct: 57 LPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 402 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.96 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.92 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.71 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.65 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.65 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.64 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.62 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.59 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.57 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.55 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.51 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.5 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.48 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.47 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.46 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.45 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.45 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.45 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.44 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.43 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.41 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.41 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.41 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.4 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.4 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.4 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.39 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.39 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.39 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.39 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.38 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.38 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.38 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.37 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.37 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.37 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.37 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.35 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.35 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.32 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.32 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.32 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.32 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.31 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.31 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.31 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.31 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.3 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.3 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.3 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.29 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.29 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.29 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.28 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.28 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.28 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.27 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.26 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.26 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.26 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.25 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.24 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.24 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.23 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.23 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.21 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.21 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.21 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.21 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.2 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.2 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.19 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.19 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.19 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.18 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.17 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.17 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.16 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.16 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.16 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.16 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.15 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.15 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.14 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.14 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.13 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.13 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.13 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.13 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.13 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.12 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.12 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.12 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.12 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.11 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.11 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.11 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.1 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.09 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.08 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.08 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.08 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.07 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.07 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.07 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.07 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.07 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.06 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.06 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.06 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.06 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.05 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.05 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.05 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.04 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.04 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.03 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.03 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.03 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.02 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.02 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.01 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.01 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.01 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.01 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.99 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.99 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.99 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.98 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.98 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.98 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.97 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.97 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.97 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.97 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.96 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.96 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.96 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.95 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.94 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.94 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.94 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.94 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.93 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.92 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.92 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.92 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.92 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.92 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.92 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.92 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.92 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.91 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.91 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.9 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.9 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.9 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.9 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.89 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.88 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.88 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.88 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.88 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.87 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.87 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.86 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.86 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.85 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.85 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.85 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.85 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.83 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.83 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.82 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.82 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.82 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.82 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.81 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.81 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.79 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.79 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.79 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.78 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.78 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.77 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.77 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.75 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.75 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.75 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.75 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.75 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.73 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.73 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.73 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.72 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.72 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.71 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.69 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.69 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.68 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.68 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.68 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.67 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.67 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.65 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.65 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.64 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.63 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.62 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.61 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.61 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.6 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.6 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.58 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.58 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.56 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.56 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.56 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.56 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.55 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.55 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.55 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.54 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.54 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.54 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.54 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.53 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.52 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.52 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.52 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.52 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.52 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.5 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.5 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.5 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.5 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.49 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.47 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.45 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.45 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.45 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.44 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.42 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.42 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.42 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.4 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.39 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.38 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.37 | |
| PLN02366 | 308 | spermidine synthase | 98.37 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.36 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.36 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.34 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.34 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.33 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.32 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.32 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.3 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.3 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.29 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.28 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.26 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.26 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.26 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.24 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.24 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.22 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.22 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.22 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.21 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.21 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.21 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.19 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.18 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.18 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.18 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.17 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.17 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.16 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.16 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.13 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.12 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.12 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.08 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.08 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.08 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.08 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.06 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.04 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.02 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.0 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.99 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 97.99 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.99 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.98 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.96 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.95 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.93 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.93 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.92 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.91 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.9 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.9 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.85 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.85 | |
| PLN02366 | 308 | spermidine synthase | 97.85 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.85 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.84 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.84 | |
| PLN02476 | 278 | O-methyltransferase | 97.84 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.83 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.82 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.82 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.8 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.78 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.78 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.77 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.76 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 97.75 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.75 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.75 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.74 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.73 | |
| PLN02476 | 278 | O-methyltransferase | 97.73 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.71 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.7 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.69 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.69 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.69 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.68 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.68 | |
| PLN02823 | 336 | spermine synthase | 97.68 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.67 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.67 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.66 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.66 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.62 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.57 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.57 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.57 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.56 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.56 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.55 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.54 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.54 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.53 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.53 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.53 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.5 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.49 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.48 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.46 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 97.44 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.44 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.43 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.43 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.43 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.42 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.4 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.4 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.38 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.36 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.34 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.34 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.34 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.32 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.31 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.28 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.27 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.22 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.22 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.21 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.2 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.19 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.18 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.16 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.16 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.13 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.11 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.07 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.05 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.03 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.99 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.92 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.9 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.85 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.83 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.83 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.83 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.82 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.78 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.77 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.72 | |
| PLN02823 | 336 | spermine synthase | 96.72 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.71 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.71 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.64 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.62 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.62 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 96.62 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.6 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.6 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.54 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.53 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.51 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.5 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.49 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.46 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.4 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.4 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.36 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.3 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.28 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.25 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 96.22 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.14 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.13 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.07 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.02 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.01 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.0 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.96 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.96 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.92 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 95.92 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.91 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.86 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 95.86 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.83 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 95.81 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.74 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.66 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.65 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.62 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.6 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 95.57 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 95.56 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.54 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 95.5 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.47 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.45 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.21 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.18 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 95.14 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.11 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.06 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 94.95 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.95 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 94.87 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.85 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.84 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.82 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 94.82 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 94.78 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 94.77 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.75 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 94.74 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.73 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.72 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 94.66 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 94.54 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.53 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 94.48 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 94.43 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.33 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.04 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 93.97 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 93.94 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 93.92 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 93.84 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.83 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.78 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 93.61 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.58 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.57 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 93.52 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.49 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 93.42 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.21 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 92.69 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 92.61 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 92.57 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 92.56 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 92.52 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 92.34 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 92.3 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 91.84 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 91.71 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 91.66 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 91.6 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 91.57 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 91.01 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 90.25 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 89.78 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 89.77 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 89.42 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 89.17 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 89.17 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-87 Score=649.32 Aligned_cols=387 Identities=57% Similarity=1.072 Sum_probs=364.5
Q ss_pred cCCCCCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++..+.+||+|||+|+|+.+|.+++|+.+.+++.+.++++.++|.++|++..+.......|||++++||+|+|+.+...
T Consensus 114 ~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 114 WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhccccccc
Confidence 44566789999999999999999999999999999999999999999999888777667899999999999999999999
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeCCCC-CChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhhhhhcC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQPVY-KHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREAG 165 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~~~~-~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 165 (402)
|..+...+|-++.|+|||||+|+++.+|.+ .+..++.+.|..++++++.+||+.+.+.+.+.+|+||..+.|+..++.+
T Consensus 194 W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~ 273 (506)
T PF03141_consen 194 WHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPG 273 (506)
T ss_pred chhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCC
Confidence 998878899999999999999999998888 6777899999999999999999999999999999999999999998888
Q ss_pred CCCCCCCCCCCCCCcccccccceeecCCCC---CCCCCCCCCCcccCCCCcccccccccccccchhhhHHhhHHHHHHHH
Q 015704 166 TIPPLCDPDDNPDNVWYVDLKACITRLPEN---GYGANVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIE 242 (402)
Q Consensus 166 f~~~~~~~~~~~~~~~y~~~~~~l~~l~~~---ga~~~~~~Wp~rl~~~~~rl~~~~~~~~~~~~~~~~~~~~~w~~~~~ 242 (402)
-.|++|...++++..||.++++||+.++.. .++.++.+||+||..+|+|++...... .+.+.|.+|+++|+.+++
T Consensus 274 ~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g--~~~e~F~~Dt~~Wk~~V~ 351 (506)
T PF03141_consen 274 KSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPG--ISPEEFKEDTKHWKKRVS 351 (506)
T ss_pred CCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCC--CCHHHHHHHHHHHHHHHH
Confidence 899999988999999999999999999875 466789999999999999999855332 356999999999999999
Q ss_pred HHHHhcc--cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCCCCCCccc
Q 015704 243 SYVRALH--WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYD 320 (402)
Q Consensus 243 ~y~~~~~--~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~~sfD 320 (402)
.|++.++ +.++++||||||++|+|||||+|.++ +||||||+|...++++.++++|||||++|+|||+|+|||+|||
T Consensus 352 ~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 352 HYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDD--PVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYD 429 (506)
T ss_pred HHHHhhcccccccceeeeeeecccccHHHHHhccC--CceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchh
Confidence 9998877 78999999999999999999999998 4799999999999999999999999999999999999999999
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
+||++++|+++.++|+++++|.||||||||||++||||..+++.++++++++|||++.++++|+++.++||+|+|+|
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=247.76 Aligned_cols=195 Identities=17% Similarity=0.336 Sum_probs=154.3
Q ss_pred ccceeecCCCCCCCCCCCCCCcccCC------CCcccccccccccccchhhhHHhhHH---------HHHHHHHHHHhc-
Q 015704 185 LKACITRLPENGYGANVSLWPERLRT------SPDRLQSIQLDAFIARKELFKAESKY---------WNEIIESYVRAL- 248 (402)
Q Consensus 185 ~~~~l~~l~~~ga~~~~~~Wp~rl~~------~~~rl~~~~~~~~~~~~~~~~~~~~~---------w~~~~~~y~~~~- 248 (402)
...|+-+.+.... ...+||++++. +++++...+..+ +|++.++++ |...++.|.+.+
T Consensus 34 ~~~CLVp~P~gYk--~P~~WP~SRd~iW~~Nvph~~L~~~K~~q-----nWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~ 106 (506)
T PF03141_consen 34 RLRCLVPPPKGYK--TPIPWPKSRDYIWYANVPHTKLAEEKADQ-----NWVRVEGDKFRFPGGGTMFPHGADHYIDQIA 106 (506)
T ss_pred CCccccCCCccCC--CCCCCCcccceeeecccCchHHhhhcccc-----cceeecCCEEEeCCCCccccCCHHHHHHHHH
Confidence 3456666553222 46899999864 888888888776 787766665 445667776444
Q ss_pred ---cc--CCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhHHhcCcccccccC-CCCCCCCC-Cccc
Q 015704 249 ---HW--KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGLIGVMHDW-CEPFDTYP-RTYD 320 (402)
Q Consensus 249 ---~~--~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~rg~~~~~~~~-~~~~~~~~-~sfD 320 (402)
+. ..+.+|.+||+|||+|+||++|.++| |.+|++.|.+. ++++|+|.|||+..++... ... .||| ++||
T Consensus 107 ~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~r-LPfp~~~fD 183 (506)
T PF03141_consen 107 EMIPLIKWGGGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQR-LPFPSNAFD 183 (506)
T ss_pred HHhhccccCCceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhcCcchhhhhhcccc-ccCCccchh
Confidence 44 56899999999999999999999995 69999999984 7899999999995554433 233 5677 9999
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC----------hhhHHHHHHHHHhcCceEEEeecCCCCCCce
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------IDVMDELQEIGKAMGWHVTLRETAEGPHASY 390 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~----------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 390 (402)
+|||+..+..+.... ..+|.|++|||||||||++|.+ .++++.|+.++++|||+...++.+
T Consensus 184 mvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~------- 254 (506)
T PF03141_consen 184 MVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD------- 254 (506)
T ss_pred hhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCC-------
Confidence 999999888776443 4799999999999999999954 367899999999999999988875
Q ss_pred EEEEEEecC
Q 015704 391 RILTADKRL 399 (402)
Q Consensus 391 ~~l~~~k~~ 399 (402)
+.+-||+.
T Consensus 255 -~aIwqKp~ 262 (506)
T PF03141_consen 255 -TAIWQKPT 262 (506)
T ss_pred -EEEEeccC
Confidence 78888864
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-25 Score=223.96 Aligned_cols=310 Identities=18% Similarity=0.222 Sum_probs=163.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEecccc--CCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR--RLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~--~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.. .........+...|+. .+|+++++||+|+|+.+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 4569999999999999998875 78999999877754321 1111112345555653 4678889999999988766
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhhhhhc
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREA 164 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 164 (402)
|+.++ ...+++++.++|||||++++........ ..+.. ......|.. ......++.++
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-~~~~~-------------------~~~~~~~~~-~~~~~~~f~~~ 173 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-GDSKR-------------------KNNPTHYRE-PRFYTKVFKEC 173 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-Ccccc-------------------cCCCCeecC-hHHHHHHHHHh
Confidence 66533 4789999999999999999974211110 00000 000011111 11222233344
Q ss_pred CCCCCCCCCCCCCCCcccccccceeecCCCCCCCCCCCCCCcc-cCCC-Ccccccccc-ccc----ccchhhhHHhhHHH
Q 015704 165 GTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANVSLWPER-LRTS-PDRLQSIQL-DAF----IARKELFKAESKYW 237 (402)
Q Consensus 165 Gf~~~~~~~~~~~~~~~y~~~~~~l~~l~~~ga~~~~~~Wp~r-l~~~-~~rl~~~~~-~~~----~~~~~~~~~~~~~w 237 (402)
||...... .......+|..+....- + ..+-++..++.+ ++.. ..++...-. -+| +...+.|-...-.+
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~g~~~~v 248 (475)
T PLN02336 174 HTRDEDGN-SFELSLVGCKCIGAYVK--N--KKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVFGEGFVS 248 (475)
T ss_pred eeccCCCC-EEEEEEEEeechhhhhh--c--cCCcceEEEEEEeecCCcchhHHHHhhhhccccccHHHHHHHhCCCCCC
Confidence 44211000 00000011111100000 0 000011111110 0000 000000000 000 00011111111111
Q ss_pred HHHHH---HHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc--Cc---cccccc
Q 015704 238 NEIIE---SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR--GL---IGVMHD 307 (402)
Q Consensus 238 ~~~~~---~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r--g~---~~~~~~ 307 (402)
...+. ...+.+.. +.-.+|||+|||+|.++..|++. ++ .|+++| ++.++..+.++ ++ +...+.
T Consensus 249 ~~~v~~te~l~~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~-----~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~ 321 (475)
T PLN02336 249 TGGLETTKEFVDKLDL--KPGQKVLDVGCGIGGGDFYMAENFDV-----HVVGIDLSVNMISFALERAIGRKCSVEFEVA 321 (475)
T ss_pred CchHHHHHHHHHhcCC--CCCCEEEEEeccCCHHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHhhcCCCceEEEEc
Confidence 11111 12222222 23346999999999999999876 33 566666 56777777554 22 333332
Q ss_pred CCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 308 WCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 308 ~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
-... .++| ++||+|+|..++.|+.+ ++.+|.|+.|+|||||.+++++
T Consensus 322 d~~~-~~~~~~~fD~I~s~~~l~h~~d---~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 322 DCTK-KTYPDNSFDVIYSRDTILHIQD---KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred Cccc-CCCCCCCEEEEEECCcccccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 2222 3466 79999999999999875 5899999999999999999986
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-17 Score=154.59 Aligned_cols=165 Identities=20% Similarity=0.288 Sum_probs=122.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..+... .++++|+++.++ +.++++.....+...|++.+|+++++||+|+|+.+ +||
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPML-----AQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHH-----HHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhh
Confidence 4679999999999998888765 788999887655 44444433334667788889999899999998765 788
Q ss_pred ccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecC-CChhhhhhhhcCC
Q 015704 88 TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKP-TNNSCYLNREAGT 166 (402)
Q Consensus 88 ~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~aGf 166 (402)
..++..++.++.++|+|||.++++++ ...+..++.+.|..+..... ..+.. ..+...++++.++
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~~~-~~~~~~el~~~~~~~~~~~~--------------~~~~~~~~~l~~~l~~~~~ 180 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFTTL-VQGSLPELHQAWQAVDERPH--------------ANRFLPPDAIEQALNGWRY 180 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeC-CCCchHHHHHHHHHhccCCc--------------cccCCCHHHHHHHHHhCCc
Confidence 88999999999999999999999974 56778888888865532111 11111 1223345555555
Q ss_pred CCCCCCCCCCCCCcccccccceeecCCCCCCCCC
Q 015704 167 IPPLCDPDDNPDNVWYVDLKACITRLPENGYGAN 200 (402)
Q Consensus 167 ~~~~~~~~~~~~~~~y~~~~~~l~~l~~~ga~~~ 200 (402)
. .+.+..+.+|+++.++++++|.+|+++.
T Consensus 181 ~-----~~~~~~~~~f~~~~~~l~~lk~~G~~~~ 209 (251)
T PRK10258 181 Q-----HHIQPITLWFDDALSAMRSLKGIGATHL 209 (251)
T ss_pred e-----eeeeEEEEECCCHHHHHHHHHHhCCCCC
Confidence 3 2456778899999999999999988764
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.8e-15 Score=149.31 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=68.1
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+.. ..+...|... +++.++||+|+||..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~-~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP 215 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAK-SNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPP 215 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHH-HHHHHcCCccceeeeecchhh-hCcCCCccEEEECCC
Confidence 3468999999999988877642 7999999988776665 334444442 2344445322 234568999999764
Q ss_pred cccccc---------------------C----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTR---------------------D----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~---------------------d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+.... + ...+++++.++|+|||.+++..
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 332111 1 1246778889999999999974
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-16 Score=140.95 Aligned_cols=102 Identities=21% Similarity=0.312 Sum_probs=84.8
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||||.++..+++. .++++|+++.|+..+. +.+.+.+.. ..+..+|++.|||++++||+|.++..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~-~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg- 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR-EKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG- 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH-HHhhccCccceEEEEechhhCCCCCCccCEEEeeeh-
Confidence 6889999999999999888865 7999999999887766 333333332 45778899999999999999999887
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++...|.+++|+|++|+|||||.+++..+
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 45555999999999999999999888754
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.7e-16 Score=141.72 Aligned_cols=104 Identities=25% Similarity=0.365 Sum_probs=74.8
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||||.++..++++ .|+++|+++.|+..+..+.......+..+.++|++++|+++++||.|+|+..
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 46779999999999999888764 6899999999987776444432223456788899999999999999999887
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.++. |+.++++|++|+|||||.+++..+
T Consensus 126 lrn~~-d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 LRNFP-DRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GGG-S-SHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhhC-CHHHHHHHHHHHcCCCeEEEEeec
Confidence 55554 899999999999999999998754
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-16 Score=123.03 Aligned_cols=89 Identities=25% Similarity=0.424 Sum_probs=68.8
Q ss_pred EeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcccccccc
Q 015704 259 LDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 259 LD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~ 332 (402)
||+|||+|.++..|+++ +. +|+++| ++.+++.+.++.. +...+...+.+ +|| +|||+|++.++++|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~-----~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA-----SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC-----EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhccCC-----EEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeecc
Confidence 89999999999999999 65 666666 4567777777644 22444445665 567 8999999999999994
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEE
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYI 356 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~ 356 (402)
++..++.|+.|+|||||+++|
T Consensus 75 ---~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 ---DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCcCeEEeC
Confidence 568999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-16 Score=137.51 Aligned_cols=180 Identities=15% Similarity=0.066 Sum_probs=132.8
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.+....++|||||-|.+..++... .++-+|.+..|+..+ +.++..++.......|-+.++|.+++||+|+++ ..
T Consensus 70 kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~--~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS-ls 146 (325)
T KOG2940|consen 70 KKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSC--RDAQDPSIETSYFVGDEEFLDFKENSVDLIISS-LS 146 (325)
T ss_pred hhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHh--hccCCCceEEEEEecchhcccccccchhhhhhh-hh
Confidence 456678999999999999999877 566677776655322 222223334446677889999999999999976 45
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCC-hhhhhhhh
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTN-NSCYLNRE 163 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 163 (402)
+||.+|++..+.++...|||+|.|+-+. .+.+++.|++-+..-.+.. +.-+ -..++.++... +...++.+
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fiasm-lggdTLyELR~slqLAelE-R~GG-------iSphiSPf~qvrDiG~LL~r 217 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASM-LGGDTLYELRCSLQLAELE-REGG-------ISPHISPFTQVRDIGNLLTR 217 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHH-hccccHHHHHHHhhHHHHH-hccC-------CCCCcChhhhhhhhhhHHhh
Confidence 9999999999999999999999999985 4788999998775322211 1111 11233333333 35569999
Q ss_pred cCCCCCCCCCCCCCCCcccccccceeecCCCCCCCCCC
Q 015704 164 AGTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGANV 201 (402)
Q Consensus 164 aGf~~~~~~~~~~~~~~~y~~~~~~l~~l~~~ga~~~~ 201 (402)
|||. +...+.+...+-|+.+.++|.+|+++|.++..
T Consensus 218 AGF~--m~tvDtDEi~v~Yp~mfeLm~dLq~MgEsn~~ 253 (325)
T KOG2940|consen 218 AGFS--MLTVDTDEIVVGYPRMFELMEDLQGMGESNAA 253 (325)
T ss_pred cCcc--cceecccceeecCchHHHHHHHHHhhcccchh
Confidence 9995 56667888889999999999999988877643
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-15 Score=117.84 Aligned_cols=90 Identities=27% Similarity=0.454 Sum_probs=69.4
Q ss_pred EEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccccccc
Q 015704 15 MDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 89 (402)
Q Consensus 15 LDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~ 89 (402)
||+|||+|..+..+++. .++++|+++.++ +.++++.. ...+...+.+.+|+++++||+|+++.+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-----~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-----EQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-----HHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-----HHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999888876 688888887655 44444322 2237777899999999999999998876665 6
Q ss_pred ChHHHHHHHHHhcCCCeEEEE
Q 015704 90 DDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 90 d~~~~l~e~~r~LkpgG~li~ 110 (402)
++..+++++.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 889999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-15 Score=135.58 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=82.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||+|-++..+++.. -...|+.+| +++||..+.+|-. +..++...|.+| || +|||+|.++..|
T Consensus 54 ~vLDva~GTGd~a~~~~k~~---g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fgl 129 (238)
T COG2226 54 KVLDVACGTGDMALLLAKSV---GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGL 129 (238)
T ss_pred EEEEecCCccHHHHHHHHhc---CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehh
Confidence 49999999999999999884 145788888 7899999998854 445677778877 88 899999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.++.| ++.+|+||.|||||||.+++-|
T Consensus 130 rnv~d---~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 130 RNVTD---IDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hcCCC---HHHHHHHHHHhhcCCeEEEEEE
Confidence 99774 6999999999999999999886
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-14 Score=130.25 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=86.9
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
-++.+|||+|||.|.++..+++. .|+++|+++..+..++ ..+.+.+....+....++++....++||+|+|..+++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 36789999999999999999987 8999999998887776 55666666655555566777666689999999999888
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.. |+..+++.+.+++||||.+++||.
T Consensus 137 v~-dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 137 VP-DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred cC-CHHHHHHHHHHHcCCCcEEEEecc
Confidence 76 999999999999999999999984
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=130.11 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHH--HcCC-CcEEEeccccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFAL--ERGA-PAMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~--~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|.++..+++. .++++|+++.|+..+..+... .... ...+...|++.+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 5679999999999988877643 689999999888666532211 1112 3446778889999999999999998
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.+++++ +++..++++++|+|||||.+++..+.
T Consensus 153 ~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 153 YGLRNV-VDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred cccccC-CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 775554 58999999999999999999998653
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=132.15 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=81.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||||||+|.++..+++. .|+++|+++.++..+... +...+. ...+...+++++++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4569999999999999888765 799999998877655522 222221 34466677788888888999999998866
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. ++..+++++.++|||||.+++++.
T Consensus 210 Hv~-d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 210 HVA-NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hcC-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 665 899999999999999999999974
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=132.83 Aligned_cols=103 Identities=19% Similarity=0.374 Sum_probs=84.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+.+.+. ...+...|...+|+++++||+|+|..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 35679999999999999888764 7899999988776554 34444444 245677788889999999999999888
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+. +...++++++|+|||||.+++.+.
T Consensus 196 ~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 196 GEHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hhccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 77765 889999999999999999999863
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-14 Score=131.19 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=73.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+++|. +|+.+| ++.+++.+.++ |+ +..++...+.+++++ ++||+|+|+.
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4799999999999999999987 566666 56777666554 43 233333333444455 8999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|+|+.+ +..+|.++.|+|||||++++..
T Consensus 121 vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 121 VLEWVAD---PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9999874 5899999999999999999864
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-14 Score=129.82 Aligned_cols=96 Identities=26% Similarity=0.344 Sum_probs=70.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.|||+|||+|-++..|+++.. ....|+++| +++|++.+.+| +. +..+...++.+| || +|||+|.|+..|
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~--~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVG--PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCSFGL 126 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEES-G
T ss_pred EEEEeCCChHHHHHHHHHHCC--CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHHhhH
Confidence 599999999999999987621 334788888 78999988876 22 455556667754 77 899999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.++++ +..+|.||.|||||||.+++-|
T Consensus 127 rn~~d---~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 127 RNFPD---RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GG-SS---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhCC---HHHHHHHHHHHcCCCeEEEEee
Confidence 88775 6899999999999999999986
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-13 Score=129.87 Aligned_cols=103 Identities=19% Similarity=0.175 Sum_probs=78.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHH-cCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE-RGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~-~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
..+.+|||||||+|.++..++.. .|+|+|.++.++.......... ......+...+++.+|+ +++||+|+|..++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 35689999999999999888765 5999999987664332111111 12234566678888888 7899999998876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|. .++..+++++++.|+|||.+++.+.
T Consensus 200 ~H~-~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 200 YHR-RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred hcc-CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 665 5899999999999999999999863
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-14 Score=132.24 Aligned_cols=125 Identities=19% Similarity=0.229 Sum_probs=89.9
Q ss_pred hhhHHhhHHHHHHHHHHHHhccc---CC---------------CCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC
Q 015704 228 ELFKAESKYWNEIIESYVRALHW---KK---------------MKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS 288 (402)
Q Consensus 228 ~~~~~~~~~w~~~~~~y~~~~~~---~~---------------~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~ 288 (402)
..|.++++|-...+..|...++. .+ ..-..|||+|||+|..+..|+.. ++ .|+.+|
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~-----~v~giD 82 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGA-----HVHGVD 82 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCC-----EEEEEE
Confidence 56777777777777777776651 11 12245999999999999999765 33 566666
Q ss_pred -CCCChhhHHhcCc----ccccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 289 -GFNTLPVIYDRGL----IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 289 -~~~~~~~~~~rg~----~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++++++.+.++.. +.....-.+. .+|| ++||+|++..++.|+.. .++..+|.|+.|+|||||+++++|.
T Consensus 83 ~s~~~~~~a~~~~~~~~~i~~~~~D~~~-~~~~~~~FD~V~s~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 83 ICEKMVNIAKLRNSDKNKIEFEANDILK-KDFPENTFDMIYSRDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCHHHHHHHHHHcCcCCceEEEECCccc-CCCCCCCeEEEEEhhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5677777776532 3333322222 3467 79999999999999762 3568999999999999999999974
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.3e-14 Score=134.57 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=75.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
+|||+|||.|.++..|+..|+ +|+++| ++.+++.+..+. + +..++...+.++..+++||+|.|..||
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 699999999999999999886 677777 567777776542 1 334444445544323799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+|+.+ +..+|.|+.|+|||||.+++++.+
T Consensus 209 eHv~d---~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 209 EHVAN---PAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HhcCC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99885 689999999999999999999643
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-13 Score=124.33 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=75.9
Q ss_pred EEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-----ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 258 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-----IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 258 vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-----~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
|||+|||-|.++..||..|+ +|+++| ++.+++.|..+.. +.......|++. .. .+||+|.|..|++|
T Consensus 63 vLDvGCGgG~Lse~mAr~Ga-----~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 63 VLDVGCGGGILSEPLARLGA-----SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred EEEecCCccHhhHHHHHCCC-----eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 99999999999999999998 889988 6778877775544 222223333333 23 69999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+++ +..++++..+.+||||.+++|..+
T Consensus 137 v~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 VPD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 885 689999999999999999999754
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-13 Score=125.21 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=76.7
Q ss_pred CCCCCeEEEECCccchhHHHHcc------CCceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEE
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIH 79 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~------~~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~ 79 (402)
..++.+|||+|||+|..+..+++ ..++++|+++.++..+...... .+. ...+...++..+|++ .+|+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~D~vv 130 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVV 130 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCChhhCCCC--CCCEEe
Confidence 34667999999999998876654 2799999999888777644433 232 344666777777764 589999
Q ss_pred ecCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++.+++++..+ ...++++++++|||||.++++.
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 88775555432 3689999999999999999985
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-13 Score=124.50 Aligned_cols=97 Identities=25% Similarity=0.358 Sum_probs=75.0
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.++++.....+...|+..++ ++++||+|+|+.+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-----~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~- 102 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-----AEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS- 102 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-
Confidence 35679999999999998888753 689999987665 444444333445666766554 4469999999876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+||..+...+++++.++|||||.+++..
T Consensus 103 l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 103 LQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 6667788999999999999999999985
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-13 Score=119.83 Aligned_cols=94 Identities=26% Similarity=0.426 Sum_probs=70.0
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~ 331 (402)
.-.+|||+|||+|.++..|++.|+ .++.+| ++.++.. +......+. ...+.+| ++||+|+|.++|+|+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~-----~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~ 91 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF-----EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHL 91 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS-----EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC-----EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhc
Confidence 344699999999999999999987 555555 3333333 222222221 1123345 899999999999999
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
++ +..+|.+|.|+|||||++++++..
T Consensus 92 ~d---~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 92 PD---PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SH---HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred cc---HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 85 689999999999999999999875
|
... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-13 Score=125.38 Aligned_cols=96 Identities=25% Similarity=0.263 Sum_probs=75.0
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcC-------c--ccccccCCCCCCCCC-CcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG-------L--IGVMHDWCEPFDTYP-RTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg-------~--~~~~~~~~~~~~~~~-~sfD~v~ 323 (402)
.+|||+|||+|.++..|+++ +. ..+|+++| +++|++.+.+|. . +..+....+.+ +|| ++||+|+
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~---~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~ 150 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGS---DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAIT 150 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEE
Confidence 35999999999999999876 31 12677877 678998887652 1 33344444554 477 7999999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++.+++|+++ +..+|.|+.|+|||||++++.|
T Consensus 151 ~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 151 MGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EecccccCCC---HHHHHHHHHHHcCcCcEEEEEE
Confidence 9999999874 6899999999999999999986
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=117.50 Aligned_cols=104 Identities=22% Similarity=0.213 Sum_probs=84.7
Q ss_pred CCCeEEEECCccchhHHHHccC----------CceEEeCCccchHHHHHHHHHHcCCC----cEEEeccccCCCCCCCCe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----------~v~~vdi~~~~~~~a~~~~a~~~~~~----~~~~~~d~~~lp~~~~sf 75 (402)
.+.++||++||||.++..+.+. +|+..|+++.++..+. +.+.++++. ..+..+|+++|||++++|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 5579999999999888766542 6899999999998776 444444432 357778999999999999
Q ss_pred eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCC
Q 015704 76 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPV 115 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~ 115 (402)
|.....+..-.+. ++++.++|++|+|||||.|.+-.++-
T Consensus 179 D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 179 DAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred eeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 9999887766665 99999999999999999999876543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=106.92 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=75.1
Q ss_pred CCCeEEEECCccchhHHHHcc--C--CceEEeCCccchHHHHHHHHHHcC-CCcEEEeccc-cCCCCCCCCeeEEEecC-
Q 015704 10 LLRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQFALERG-APAMVAAFAT-RRLPYPSQAFDLIHCSR- 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~--~--~v~~vdi~~~~~~~a~~~~a~~~~-~~~~~~~~d~-~~lp~~~~sfDlI~s~~- 82 (402)
++.+|||+|||+|.++..+++ . +++++|+++.++..++........ ....+...|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 467999999999999988887 3 899999999888777644423222 2344666676 22332 35699999987
Q ss_pred cccccc--cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWT--RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~--~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...++. ++...+++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 333232 345789999999999999999985
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-13 Score=123.37 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=109.2
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.+.+|||+|||+|.++..+++. .++++|+++.++..+ +++.. ...+...|....++++++||+|+++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~- 107 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA-----KTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA- 107 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH-----HHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-
Confidence 3468999999999998888764 568888887655333 32221 234566788888888899999999876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhhhhhc
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNREA 164 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 164 (402)
+|+..++..++.++.++|+|||.++++++ ......++...+... .. .+ .+......++..+
T Consensus 108 l~~~~~~~~~l~~~~~~L~~~G~l~~~~~-~~~~~~~~~~~~~~~-----~~-----------~~--~~~~~~~~~l~~~ 168 (240)
T TIGR02072 108 LQWCDDLSQALSELARVLKPGGLLAFSTF-GPGTLHELRQSFGQH-----GL-----------RY--LSLDELKALLKNS 168 (240)
T ss_pred hhhccCHHHHHHHHHHHcCCCcEEEEEeC-CccCHHHHHHHHHHh-----cc-----------CC--CCHHHHHHHHHHh
Confidence 56666899999999999999999999963 445555444443210 00 00 0112334455555
Q ss_pred CCCCCCCCCCCCCCCcccccccceeecCCCCCCCC
Q 015704 165 GTIPPLCDPDDNPDNVWYVDLKACITRLPENGYGA 199 (402)
Q Consensus 165 Gf~~~~~~~~~~~~~~~y~~~~~~l~~l~~~ga~~ 199 (402)
|.. ..........+|.+...+++.++.+|+++
T Consensus 169 -f~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 200 (240)
T TIGR02072 169 -FEL--LTLEEELITLSFDDPLDVLRHLKKTGANG 200 (240)
T ss_pred -cCC--cEEEEEEEEEeCCCHHHHHHHHHHhccCc
Confidence 643 22234455667888888999888777654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=111.93 Aligned_cols=102 Identities=21% Similarity=0.313 Sum_probs=81.5
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp--~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++ ..++++|+++.++..+. +.+++.+.+ ..+...|+.+++ ++ +.||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEE
Confidence 3567999999999999988883 27999999998887666 444555555 457778888877 66 89999999
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.++ ++..++..+++++.+.|++||.+++...
T Consensus 80 ~~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 80 NGVL-HHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ESTG-GGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCch-hhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 8775 5555888999999999999999999863
|
... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-12 Score=121.87 Aligned_cols=96 Identities=24% Similarity=0.256 Sum_probs=75.0
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
...+|||+|||+|.++..|++.+. .|+.+| ++.+++.+.++.. ...+..-.+.+ +|+ ++||+|+|+.++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-----~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-----QVTALDLSPPMLAQARQKDAADHYLAGDIESL-PLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCCEEEcCcccC-cCCCCcEEEEEECchhhh
Confidence 456799999999999999998876 566666 5678888877653 22233333443 366 79999999988887
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.. ++..+|.|+.|+|||||+++++.
T Consensus 116 ~~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 116 CG---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cC---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 65 46899999999999999999985
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=113.71 Aligned_cols=95 Identities=29% Similarity=0.561 Sum_probs=73.8
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..+.+. +++++|+++.++.. ........+....+.++++||+|+|+.+++|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence 56789999999999999999776 78899998765533 1122222222344556789999999988666
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.. ++..+++++.++|||||+++++++.
T Consensus 91 ~~-d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 91 LP-DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SS-HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred cc-cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 55 8999999999999999999999753
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-12 Score=117.27 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+.. ..+...|...+++++++||+|+++.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKV-KDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence 4679999999999988877642 7899999987776555333 233333 34566677788888899999998766
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++.+++..+++++.++|+|||.+++...
T Consensus 124 -l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 -LRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred -cccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 55556889999999999999999998754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=123.49 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=79.7
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|..+..++.. .++++|+++.++..+..... . .....+...|+...|+++++||+|++..+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~-~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS-D-KNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC-c-CCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 35679999999999988887653 78999998876654442211 1 1234466678778889889999999987777
Q ss_pred cccc-ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTR-DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~-d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+.. ++..++++++++|||||.++++..
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7753 678999999999999999999854
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=120.03 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||||.++..+.+. .++++|+++.|+..+ +++. .....+.+.+|+++++||+|+++.++ |
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a-----~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l-~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMN-----LVAD---DKVVGSFEALPFRDKSFDVVMSSFAL-H 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH-----Hhcc---ceEEechhhCCCCCCCEEEEEecChh-h
Confidence 4679999999999999888765 788999988777544 3321 23566888999999999999998875 5
Q ss_pred cccChHHHHHHHHHhcCCCe
Q 015704 87 WTRDDGILLLEVNRMLRAGG 106 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG 106 (402)
+.+|+..++++++|+|||.+
T Consensus 122 ~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 122 ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ccCCHHHHHHHHHHHhcCce
Confidence 55689999999999999953
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=122.80 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=74.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCCCcccEEEEcccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKR 334 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~ 334 (402)
..|||+|||+|.++..|+++.. ...|+++| ++.|++.+.++++ ..++.-.+.++ .+.+||+|+|+.+|+|+++
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p---~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d- 104 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWP---GAVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNAALQWVPE- 104 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCC---CCEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEehhhhhCCC-
Confidence 5699999999999999998731 12577777 5789998888775 23332233332 2379999999999999874
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEe
Q 015704 335 CNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 335 ~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+..+|.++.|+|||||++++..
T Consensus 105 --~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 105 --HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred --HHHHHHHHHHhCCCCcEEEEEc
Confidence 5899999999999999999974
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=122.99 Aligned_cols=105 Identities=21% Similarity=0.257 Sum_probs=81.2
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC-CCCCCeeEEEe
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHC 80 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp-~~~~sfDlI~s 80 (402)
.++.++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+.+.+.. ..+...++.+++ +++++||+|+|
T Consensus 40 ~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~-~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 40 ELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAK-QAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred hcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 34456679999999999999988876 7999999998887665 334444432 345666666553 56789999999
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+ +++..++..+++++.++|||||.+++..
T Consensus 119 ~~v-l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 119 HAV-LEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hhH-HHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 877 4555588999999999999999999874
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=116.29 Aligned_cols=100 Identities=17% Similarity=0.254 Sum_probs=75.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..|+++ .|+++|+++.++..+. +.+...+.. ......|...++++ ++||+|+|+.++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~-~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLE-RIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 4579999999999999999876 7899999998876665 334444443 34555676666664 67999999877554
Q ss_pred ccc-ChHHHHHHHHHhcCCCeEEEEE
Q 015704 87 WTR-DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 87 ~~~-d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+.. +...+++++.++|||||++++.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 442 3578999999999999996554
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=116.34 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=75.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..++++ .|+++|+++.++..+. +.+...+........|....+++ ++||+|+|+.+++++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence 4579999999999999999876 7999999998776655 34445555544555565555554 579999998776655
Q ss_pred cc-ChHHHHHHHHHhcCCCeEEEEE
Q 015704 88 TR-DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 88 ~~-d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.. +...++++++++|+|||++++.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 42 3578999999999999996554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-12 Score=121.26 Aligned_cols=96 Identities=25% Similarity=0.396 Sum_probs=75.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.+++++ ..+...|++.++ ++++||+|+|+.+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-----~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~- 98 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-----AAARERG--VDARTGDVRDWK-PKPDTDVVVSNAA- 98 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHhcC--CcEEEcChhhCC-CCCCceEEEEehh-
Confidence 35679999999999999888754 689999987665 4444443 345566776664 4579999999876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+||.+++..++++++++|||||.+++..+
T Consensus 99 l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 99 LQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 55666899999999999999999999853
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-12 Score=125.86 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=71.5
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCCCCCCCCC-CcccEEE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDTYP-RTYDLLH 323 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~~~~~~~~-~sfD~v~ 323 (402)
.-.+|||+|||+|.++..|+++ ++ +|+++| ++.+++.+.+ +|+ +..+..-.+.+ +|+ ++||+|+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~-----~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA-----NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEE
Confidence 3456999999999999999986 55 555555 4555654433 344 33333333333 466 8999999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|..+++|+.+ ...+|.|+.|+|||||.+++.+
T Consensus 192 s~~~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999875 5799999999999999999975
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-12 Score=111.02 Aligned_cols=101 Identities=20% Similarity=0.357 Sum_probs=79.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.++||+|||.|+.+.+|+++ .|+++|.++..+.... +.+.+.+++......|+....++ +.||+|+|..++.++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFL 107 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence 4679999999999999999998 7999999998876653 67777888877777788777775 689999987666666
Q ss_pred ccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 88 TRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 88 ~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+ .+..++.+...++|||++++.+
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 3688999999999999998864
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-12 Score=116.61 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=76.2
Q ss_pred CCCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcC--CCcEEEeccccCCCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERG--APAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++. +++++|+++.++..+.... ...+ ....+...|+..++++ .+|+|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI-AAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHH-HhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 46679999999999988777542 6999999998886665333 2222 2345667788777765 5899998
Q ss_pred cCccccccc-ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~-d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.+++++.. +...++++++++|+|||.++++..
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 877555542 357899999999999999999953
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-13 Score=106.64 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=54.9
Q ss_pred EEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CC-CCCCeeEEEecCcccccc
Q 015704 15 MDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PY-PSQAFDLIHCSRCRINWT 88 (402)
Q Consensus 15 LDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-p~-~~~sfDlI~s~~~~~~~~ 88 (402)
||+|||+|.++..+.+. +++++|+++.++..+..+.................+. .. ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999988877654 7899999999985555344332222222222222221 11 22599999999886666
Q ss_pred cChHHHHHHHHHhcCCCeEE
Q 015704 89 RDDGILLLEVNRMLRAGGYF 108 (402)
Q Consensus 89 ~d~~~~l~e~~r~LkpgG~l 108 (402)
+++..++++++++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 78999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-12 Score=120.74 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=76.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHH---cCCCcEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE---RGAPAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~---~~~~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++++|||+|||+|.++..++.. .++|+|.++.++..+. .++. ......+...+++++|.. .+||+|+|+.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~--~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g 196 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFE--AVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG 196 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHH--HHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc
Confidence 35689999999999988777654 5899999987765432 1111 112234555677777754 4899999998
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|+ .++..++++++++|||||.|++.+.
T Consensus 197 vL~H~-~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 197 VLYHR-KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hhhcc-CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 86665 4899999999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.3e-12 Score=127.75 Aligned_cols=103 Identities=18% Similarity=0.307 Sum_probs=80.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|..+..++.. .++++|+++.++..+.. .+........+...|...+++++++||+|+|..+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALE-RAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 35679999999999888777754 68999999877655442 222222234566778888888888999999988866
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. ++..++++++++|||||.++++.+
T Consensus 344 h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 344 HIQ-DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ccC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 664 899999999999999999999864
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-12 Score=116.82 Aligned_cols=95 Identities=19% Similarity=0.305 Sum_probs=67.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCcccccccCCCCCC--CCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGLIGVMHDWCEPFD--TYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~~~~~~~~~~~~~--~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||.|.++..|+++|. +|+++| ++.+++.+. .+++ ..++..+.++. +++.+||+|+|..++
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~-----~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF-----DVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFILSTVVL 105 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----EEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEEEecch
Confidence 4599999999999999999987 566666 455554433 3344 11211112222 235789999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.|++ ..+...++.++.|+|||||++++-
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 8876 345789999999999999996553
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-12 Score=104.25 Aligned_cols=92 Identities=28% Similarity=0.485 Sum_probs=69.3
Q ss_pred EEEECCccchhHHHHcc-------CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc-cc
Q 015704 14 VMDAGCGVASFGAYLLP-------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC-RI 85 (402)
Q Consensus 14 VLDiGcG~G~~~~~L~~-------~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~-~~ 85 (402)
|||+|||+|..+..+.+ ..++++|+++.++..+. +...+.+....+.+.|..++++.+++||+|+|+.. +.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~-~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAK-KRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHH-HHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHH-HhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999988887763 37889999988886665 33333456777888899999988899999999555 55
Q ss_pred ccccC-hHHHHHHHHHhcCCCe
Q 015704 86 NWTRD-DGILLLEVNRMLRAGG 106 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG 106 (402)
|+.++ ...+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 54433 4789999999999998
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=107.87 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=78.8
Q ss_pred CeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCC-CCCCCeeEEEecCcccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp-~~~~sfDlI~s~~~~~~ 86 (402)
..||++|||||..-....-. +|+++|.++.|-+-+....+..+..... +..++.+++| ++++|+|.|+|..++..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCS 157 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCS 157 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEec
Confidence 36799999999877666532 8999999988765555444444333443 6777889998 88999999999877444
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+++.+.|+++.|+|||||.+++-.+
T Consensus 158 -ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 -VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred -cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 45899999999999999999999854
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-12 Score=122.18 Aligned_cols=109 Identities=21% Similarity=0.397 Sum_probs=72.7
Q ss_pred HHHHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChh----hHHhcCcccccccCCCCCCC
Q 015704 241 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLP----VIYDRGLIGVMHDWCEPFDT 314 (402)
Q Consensus 241 ~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~----~~~~rg~~~~~~~~~~~~~~ 314 (402)
++.+.+.+.+.+|. +|||+|||.|+++.+++++ |+ +|++++ +.++.. .+.++|+...+.-.+.++..
T Consensus 51 ~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~-----~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 51 LDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGC-----HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCc-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 34556666677664 5999999999999999999 65 455554 445554 44566763222222334445
Q ss_pred CCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 315 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 315 ~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++.+||-|+|-.+|+|+.. .+....+.++.|+|||||.+++.
T Consensus 124 ~~~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ---S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred cCCCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 5679999999999999974 46789999999999999999987
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-11 Score=106.19 Aligned_cols=114 Identities=24% Similarity=0.342 Sum_probs=84.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..++... ....|+++| ++.+++.+.+ .|+ +..++...+.+.. +++||+|+|..+
T Consensus 47 ~~VLDiGcGtG~~al~la~~~---~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIAR---PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHC---CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc-
Confidence 459999999999999888642 123677777 4566654443 344 4445544444443 569999999741
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 380 (402)
.+++.++.++.|+|||||++++-+..-....+.++...+.|.+..+
T Consensus 122 ------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 ------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 3568999999999999999999988878888999999999997665
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=115.54 Aligned_cols=103 Identities=23% Similarity=0.272 Sum_probs=78.8
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|..+..++.. .++++|+++.++..+.. .....+.. ..+...+++.+|+++++||+|+++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~-~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA-NARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH-HHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 35779999999999766544432 58999999887766553 33334443 3456678888898888999999876
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+ +|+..+...+++++.++|||||.++++..
T Consensus 155 v-~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 155 V-INLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred c-ccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5 55666888999999999999999999864
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=117.85 Aligned_cols=102 Identities=20% Similarity=0.322 Sum_probs=75.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-------CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-------~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
.+..+|||+|||+|.++..+.+. .++++|+++.++ +.++++.....+...|...+|+++++||+|++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-----~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-----KYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-----HHHHHhCCCCeEEEeecccCCCcCCceeEEEEe
Confidence 35578999999999988877643 368888887655 444444444556777888899999999999975
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHH
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 124 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~ 124 (402)
.. ...++++.|+|||||++++.+ |....+.+++.
T Consensus 159 ~~--------~~~~~e~~rvLkpgG~li~~~-p~~~~l~el~~ 192 (272)
T PRK11088 159 YA--------PCKAEELARVVKPGGIVITVT-PGPRHLFELKG 192 (272)
T ss_pred cC--------CCCHHHHHhhccCCCEEEEEe-CCCcchHHHHH
Confidence 32 134689999999999999996 45555555543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-12 Score=115.16 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=79.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCc-ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
..|||+|||+|.++..|+++|. .|+++| ++.+++.+. +.|+ +.....-... .+++.+||+|+|+.+|+
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDINA-AALNEDYDFIFSTVVFM 105 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchh-ccccCCCCEEEEecccc
Confidence 3699999999999999999987 555555 455665443 3344 1111111111 23457899999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeC--------------hhhHHHHHHHHHhcCceEEEeecC
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDS--------------IDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~--------------~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
|+.. .+...++.++.|+|||||++++-+- ......+...+.. |++...++.
T Consensus 106 ~~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~e~ 170 (195)
T TIGR00477 106 FLQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYNEA 170 (195)
T ss_pred cCCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEeecc
Confidence 8863 3568999999999999999554310 0224556666654 877766643
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=117.43 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+..... .....+...|.+.+++++++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 35679999999999988777542 68899998877655442211 112345667888889988999999998776
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++. ++...++++.++|||||.+++..
T Consensus 189 ~~~~-d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 189 EYWP-DPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred hhCC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 5554 78899999999999999998874
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-12 Score=104.03 Aligned_cols=90 Identities=24% Similarity=0.367 Sum_probs=52.8
Q ss_pred EeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCC-CCCCC-CcccEEEEccccc
Q 015704 259 LDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEP-FDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 259 LD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~-~~~~~-~sfD~v~~~~~~~ 329 (402)
||+|||+|.++..++++. ....++.+| ++.+++.+.+| +. ...+.-...+ +...+ ++||+|++.+||+
T Consensus 1 LdiGcG~G~~~~~l~~~~---~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 899999999999999883 344666766 56666444443 21 1112211122 22223 5999999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEE
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHV 354 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~ 354 (402)
|+. ++..+|..+.++|||||.+
T Consensus 78 ~l~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLE---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S----HHHHHHHHTTT-TSS-EE
T ss_pred hhh---hHHHHHHHHHHHcCCCCCC
Confidence 994 5789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7e-12 Score=119.81 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=80.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhH----HhcCcccccccCCCCCC--CCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVI----YDRGLIGVMHDWCEPFD--TYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~----~~rg~~~~~~~~~~~~~--~~~~sfD~v~~~~~~~ 329 (402)
+|||+|||+|.++..|+++|+ .|+++| ++.+++.+ .+.++ .+...+.++. .++++||+|+|..+|+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhh
Confidence 599999999999999999987 556666 44555433 34455 1111111222 2357999999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe---Ch-----------hhHHHHHHHHHhcCceEEEeec
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD---SI-----------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~---~~-----------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
|+.. .++..++.+|.|+|||||++++-. .. .....+++.+.. |++....+
T Consensus 196 ~l~~-~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e 259 (287)
T PRK12335 196 FLNR-ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNE 259 (287)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEec
Confidence 9873 467899999999999999966532 10 225567777766 99887643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-12 Score=104.52 Aligned_cols=97 Identities=25% Similarity=0.369 Sum_probs=69.5
Q ss_pred eEEeccccchHHHHHHhh--cCCCceEEEeccCC-CCCChhhHHhcC----c---ccccccCCCCCCCCCCcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVS-GFNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~--~~~~~~~~~v~~~~-~~~~~~~~~~rg----~---~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
+|||+|||+|.++..|++ .++ .|+++| ++.+++.+.++- . +..++.-......++..||+|++..
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGA-----RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTS-----EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCC-----EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 599999999999999999 666 566666 456776665553 3 4444432211134456899999999
Q ss_pred -ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 -LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 -~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+.++.+..+...+|.++.+.|||||++++++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44444332356799999999999999999985
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=113.90 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=70.1
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEcccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~ 332 (402)
.+|||+|||+|.++..|+++ +. +|+++| +++|++.+.++.- .++...+.+ +|+ +|||+|+|+.+++|..
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~-----~v~gvD~S~~Ml~~a~~~~~--~~~~d~~~l-p~~d~sfD~v~~~~~l~~~~ 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKY-----YVVALDYAENMLKMNLVADD--KVVGSFEAL-PFRDKSFDVVMSSFALHASD 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCC-----EEEEECCCHHHHHHHHhccc--eEEechhhC-CCCCCCEEEEEecChhhccC
Confidence 46999999999999999988 33 788888 7899999887642 344445664 477 8999999999998866
Q ss_pred ccCCHHHHHHHhhhhccCCc
Q 015704 333 KRCNMSTIMLEMDRMLRPGG 352 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG 352 (402)
+++.+|.||.|+|||.+
T Consensus 125 ---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 ---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CHHHHHHHHHHHhcCce
Confidence 46899999999999954
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=117.39 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=66.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhh---HHh----cCcccccccCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPV---IYD----RGLIGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~---~~~----rg~~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
+.|||+|||+|.++..++..|+. .|+++| +..++.. +.. .+.+.......+.++ ++.+||+|+|.++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~----~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~~~~FD~V~s~gv 197 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK----SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-ELYAFDTVFSMGV 197 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC----EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-CCCCcCEEEEcch
Confidence 46999999999999999988752 345555 3444432 111 111222222223333 2369999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+.|.. ++..+|.|+.|+|||||.+++.+
T Consensus 198 L~H~~---dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 198 LYHRK---SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred hhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence 99976 57899999999999999999873
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=119.27 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=67.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhh--HHhc--C---cccccccCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPV--IYDR--G---LIGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~--~~~r--g---~~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
+.|||+|||+|.++..|+..|+. .|+++| ++.++.. +..+ + -+..+..-.+.++. +++||+|+|..+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~----~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK----LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC----EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 46999999999999999998752 255555 3333321 1111 1 13333333344443 689999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++|.. ++..+|.++.|+|||||.+++.+
T Consensus 199 l~H~~---dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 199 LYHRR---SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred hhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 99965 57899999999999999999873
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-11 Score=116.55 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.+...+....+...|....++ +++||+|+++.++++.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 3469999999999999988876 7999999988876554 4555556655555556655554 5789999998775554
Q ss_pred cc-ChHHHHHHHHHhcCCCeEEEEE
Q 015704 88 TR-DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 88 ~~-d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.. +...+++++.++|+|||++++.
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 42 3578999999999999997664
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-11 Score=109.30 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=77.5
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccc-cCCC--CCCCCeeEE
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT-RRLP--YPSQAFDLI 78 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~-~~lp--~~~~sfDlI 78 (402)
+..+..+|||+|||+|.++..+++. .++++|+++.++..+... +...+.. ..+...|+ +.++ +++++||+|
T Consensus 37 ~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 37 FGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKK-IEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred cCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHH-HHHcCCCCEEEEecCHHHHHHHHcCccccceE
Confidence 3456789999999999988877653 699999999888666533 3333433 34666676 6666 777899999
Q ss_pred EecCccccccc--------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++.. .+|.. ....+++++.++|||||.+++++
T Consensus 116 ~~~~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 116 YLNFP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEECC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 98654 33322 13678999999999999999986
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-11 Score=112.98 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=74.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------------ccccccCCCCCCCCCCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------------IGVMHDWCEPFDTYPRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------------~~~~~~~~~~~~~~~~sfD~v 322 (402)
++|||+|||.|-.+..|+..|+ +|+++| +..+++.|.+..- +...+.-. ...-..||.|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-----~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~---E~~~~~fDaV 162 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-----QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV---EGLTGKFDAV 162 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-----eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch---hhccccccee
Confidence 4599999999999999999998 888888 6788888877621 11222222 2233469999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
.|+.|++|..+ +...+.-+.+.|||||.++|++-+
T Consensus 163 vcsevleHV~d---p~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 163 VCSEVLEHVKD---PQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeHHHHHHHhC---HHHHHHHHHHHhCCCCceEeeehh
Confidence 99999999774 689999999999999999999643
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-11 Score=105.72 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
...+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+.. ..+...|... +.++++||+|+||..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCccccccccccccc-cccccceeEEEEccch
Confidence 5679999999999999888875 4899999987776554 444455555 4445555322 2346899999999774
Q ss_pred cccccC----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRD----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.-..+ ...++++..+.|+|||.+++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 433321 36789999999999999987743
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-12 Score=112.23 Aligned_cols=122 Identities=23% Similarity=0.321 Sum_probs=80.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCCC--CCCcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDT--YPRTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~--~~~sfD~v~~~~~~~~~~~ 333 (402)
..+||+|||.|.-+.+||++|++|..+++.+..-....++|.++++- ++..+.++.. +++.||+|+|..||.|++
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~- 108 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQ- 108 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS--
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCC-
Confidence 46999999999999999999995444444443323344667677771 2222233333 457999999999999999
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEe---Ch-----------hhHHHHHHHHHhcCceEEEeec
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRD---SI-----------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~---~~-----------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+..+..++..|..-+||||++++-. .. .....++..+. .|++....+
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 5578899999999999999988842 11 11235556555 499876543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-11 Score=124.30 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=78.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++|+|+++.++..+... ....+....+..+|...+| +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Arar-l~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKK-KQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-hhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 4679999999999888777643 799999999888666533 2223334445666777777 78899999999877
Q ss_pred ccccc------------cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWT------------RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~------------~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++++. .+...++++++++|||||.+++..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 66552 245789999999999999999985
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.6e-11 Score=111.33 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=80.2
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEcccccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 332 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~ 332 (402)
-.+|||+|||+|.++..|+++.. ..+|+++| ++.+++.+.++-- +..+..-.+.+. .+++||+|+|+.+|+|+.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWP---AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLP 107 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCC
Confidence 35699999999999999998731 12566766 5677777766531 222222222221 237999999999999987
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEEEeCh----hhHHHHHHHHHhcCceEE
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYIRDSI----DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~~~~~----~~~~~~~~~~~~~~w~~~ 378 (402)
+ +..+|.++.|+|||||++++..+. .....++++.....|...
T Consensus 108 d---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 108 D---HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred C---HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 4 589999999999999999997422 122345555555556543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=104.21 Aligned_cols=97 Identities=20% Similarity=0.144 Sum_probs=75.4
Q ss_pred CCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|..+..++. ..|+++|.++.++..+. +.+++.+.+ ..+...+...++. .++||+|+|+.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 478999999999988877764 27999999998887665 444445554 4466667777766 67999999863
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..+...++++++++|||||.+++...
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 23678899999999999999999853
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-11 Score=109.14 Aligned_cols=98 Identities=21% Similarity=0.311 Sum_probs=70.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|++... ...+|+.+| ++++++.+.++ ++ +..++...+.+ ++| ++||+|++..+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVG--PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFG 123 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEecc
Confidence 4699999999999999987621 112566666 45666555543 22 33344333443 366 79999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|+.+ +..+|.|+.|+|||||++++.+.
T Consensus 124 l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVPD---YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 988764 57999999999999999998763
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-11 Score=108.84 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=73.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEcccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKR 334 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~ 334 (402)
+|||+|||.|.+.++|.+.. +|. +.+++ .+..+..+.+||+--...+.-+.+..|| +|||.|+++++++++.+
T Consensus 16 rVLDLGCGdG~LL~~L~~~k-~v~---g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~- 90 (193)
T PF07021_consen 16 RVLDLGCGDGELLAYLKDEK-QVD---GYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR- 90 (193)
T ss_pred EEEecCCCchHHHHHHHHhc-CCe---EEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence 49999999999999999852 333 33444 3556888899999434446667778899 89999999999999874
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 335 CNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 335 ~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
|+.+|.||.|| |...|++=+
T Consensus 91 --P~~vL~EmlRV---gr~~IVsFP 110 (193)
T PF07021_consen 91 --PDEVLEEMLRV---GRRAIVSFP 110 (193)
T ss_pred --HHHHHHHHHHh---cCeEEEEec
Confidence 68999999877 678888843
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-11 Score=105.31 Aligned_cols=99 Identities=20% Similarity=0.368 Sum_probs=73.3
Q ss_pred ceEEeccccchHHHHHHhh-cCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-CCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIE-QKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~-~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++ .+. ...++.+| ++.+++.+..+ ++ +..++...+.++. |++.||+|++..
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~---~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNP---GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTT---TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CEEEEecCcCcHHHHHHHHhcCC---CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 3599999999999999994 321 12577777 57788777663 44 3444433333221 458999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
++.|..+ +..+|.++.|.|||||.+++++..
T Consensus 82 ~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 9988764 579999999999999999999876
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-11 Score=111.34 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=73.4
Q ss_pred CCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc----E--EEeccccCCCCCCCCeeEEEecC
Q 015704 11 LRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA----M--VAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~----~--~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+.+|||+|||+|.++..|++. .|+|+|++..++..+....+...-... . +.+.+.+.+ .+.||.|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeeeHH
Confidence 467999999999999999876 899999998877666543111110011 1 222233333 34599999999
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|.. |++.++..+.+.|||||.+++++.
T Consensus 167 vleHV~-dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 VLEHVK-DPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHh-CHHHHHHHHHHHhCCCCceEeeeh
Confidence 977765 999999999999999999999973
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-11 Score=112.56 Aligned_cols=118 Identities=23% Similarity=0.297 Sum_probs=81.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.|||+|||.|.++..+++...++ +|+++| ++++++.+.++ |+ +..+..-.+.. +++.+||+|++.+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~~~~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-PFPDTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-CCCCCCCEeehHHHH
Confidence 59999999999999998874222 444554 45666555543 44 23333222221 356799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeChh----------------hHHHHHHHHHhcCceEEEee
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------VMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~----------------~~~~~~~~~~~~~w~~~~~~ 381 (402)
+|+.+ ...+|.++.|+|||||++++.+... ....+..++.+-.+++....
T Consensus 78 ~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 78 HHIKD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HhCCC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 99875 5899999999999999999986421 13456666777777765543
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.6e-11 Score=108.04 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=83.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCc---eEEEeccCC-CCCChhhHHhcC----c-----ccccccCCCCCCCCC-CcccE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDC---WVMNVVPVS-GFNTLPVIYDRG----L-----IGVMHDWCEPFDTYP-RTYDL 321 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~---~~~~v~~~~-~~~~~~~~~~rg----~-----~~~~~~~~~~~~~~~-~sfD~ 321 (402)
-++||++||+|-+|-.+.+.-.+. ...+|+-.| ++.||..+..|. + +..+-..+|.+| || ++||+
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~s~D~ 180 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDDSFDA 180 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCCccee
Confidence 569999999998888887662210 114666666 678886666554 4 222333457766 99 89999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhH-HHHHHHHHhcCce
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVM-DELQEIGKAMGWH 376 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~-~~~~~~~~~~~w~ 376 (402)
...+.-+.... +++.+|+|++|||||||.|.+-+=..+. ..++.++..--.+
T Consensus 181 yTiafGIRN~t---h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 181 YTIAFGIRNVT---HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred EEEecceecCC---CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 99998777765 4699999999999999999998755444 5666665544333
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.9e-11 Score=108.17 Aligned_cols=101 Identities=24% Similarity=0.320 Sum_probs=76.9
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++..+..+... .........+...|...+++++++||+|++..++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 5679999999999988877643 688999988666444322 1111223445666777788888999999998775
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.++. ++..+++++.++|+|||.+++..
T Consensus 98 ~~~~-~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE-DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC-CHHHHHHHHHHHhcCCcEEEEEe
Confidence 5554 89999999999999999999985
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.7e-11 Score=114.16 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=73.7
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
..+|||+|||+|.++..++++ .++++|+++.++..+.. .....+....+...|... ..+++||+|+|+..+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~-nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRA-TLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCEEEEccccc--ccCCCccEEEECCCccC
Confidence 458999999999999888764 68999999888876653 334455555555445432 23578999999887554
Q ss_pred ccc----ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTR----DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~----d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
... ....+++++.+.|||||.+++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 221 236899999999999999999864
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-09 Score=103.33 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=81.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-----ccccccCCCCCCCCC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-----IGVMHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-----~~~~~~~~~~~~~~~-~sfD~v~~ 324 (402)
..|||+|||+|.++..+++++. ...|+.+| ++.+++.+.+. +. +..+.+. .+..++ .+||+|+|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P---~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D--~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNP---QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINN--ALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcc--ccccCCCCCEEEEEE
Confidence 4699999999999999998852 23566666 44566555432 11 2233221 123344 69999999
Q ss_pred cccccccccc--CCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 325 AGLFSVESKR--CNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 325 ~~~~~~~~~~--~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
.--|+..... .....++.+..|+|||||.+++--+. .....+++++. ++.... +..+.+|+-++|.
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va----~~~kf~vl~a~k~ 374 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIA----TNNKFVVLKAVKL 374 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEc----cCCCEEEEEEEeC
Confidence 7666433211 12357899999999999999998432 33455555443 222222 2347889988883
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-11 Score=106.92 Aligned_cols=138 Identities=15% Similarity=0.200 Sum_probs=92.4
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc----ccccccCCCCCCC-CC-CcccE
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----IGVMHDWCEPFDT-YP-RTYDL 321 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~----~~~~~~~~~~~~~-~~-~sfD~ 321 (402)
.++..+++++||+|||.|.|++.|+.+.- .++.+| ++..++.|.+|-- |..++ -.++. .| .+||+
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd-----~LlavDis~~Al~~Ar~Rl~~~~~V~~~~---~dvp~~~P~~~FDL 109 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCD-----RLLAVDISPRALARARERLAGLPHVEWIQ---ADVPEFWPEGRFDL 109 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEE-----EEEEEES-HHHHHHHHHHTTT-SSEEEEE---S-TTT---SS-EEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhC-----ceEEEeCCHHHHHHHHHhcCCCCCeEEEE---CcCCCCCCCCCeeE
Confidence 47888999999999999999999999953 677776 5677888877733 32232 12233 36 89999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------hhHHHHHHHHHhcCceEEEeecCCCCCCceE
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------DVMDELQEIGKAMGWHVTLRETAEGPHASYR 391 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 391 (402)
|+++.|+.|+.+..++..++..+...|+|||.+|+-.-. .-.+.|.+++.+.-=++.-..-..++ ..|-
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS-PNED 188 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-TTSE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-CCCc
Confidence 999999999987667788999999999999999997432 12456666666655555544443322 3444
Q ss_pred EEEE
Q 015704 392 ILTA 395 (402)
Q Consensus 392 ~l~~ 395 (402)
-|.+
T Consensus 189 ~~~~ 192 (201)
T PF05401_consen 189 CLLA 192 (201)
T ss_dssp EEEE
T ss_pred eEee
Confidence 4444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-10 Score=107.52 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=73.7
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++|||+|||+|.++..+++. .++++|+++.++..+.. .....+.. ..+...|....|++ ++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~-~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRE-RIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 47999999999988877653 68899998776655542 33333332 24555666555654 5899999887766
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|. .+...+++++.++|||||.+++...
T Consensus 79 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HI-KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hC-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 65 4789999999999999999999863
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-11 Score=112.05 Aligned_cols=99 Identities=7% Similarity=0.095 Sum_probs=72.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+++.. -...+++++| +++++..+.++ +. +..++. ++..+| ..+|+|+|+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~-~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNIN-QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN---DIRHVEIKNASMVILNF 130 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcC-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC---ChhhCCCCCCCEEeeec
Confidence 3599999999999999987521 0123677777 57788777654 21 223332 223344 5799999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+++|+.+. +...+|.++.|+|||||.++++|.
T Consensus 131 ~l~~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPE-DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHH-HHHHHHHHHHHhcCCCeEEEEeec
Confidence 99998742 467999999999999999999975
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=104.83 Aligned_cols=105 Identities=17% Similarity=0.261 Sum_probs=76.6
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC---CCCCCeeEE
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP---YPSQAFDLI 78 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp---~~~~sfDlI 78 (402)
++....+|||||||+|.++..++.+ .++++|++..++..+. +.+...+.. ..+...|+..++ ++++++|.|
T Consensus 13 f~~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~-~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 13 FGNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAAN-NKANKLGLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred hCCCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 3445679999999999998888764 7899999988776665 333444444 345666765443 456799999
Q ss_pred EecCcccccccCh--------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++.. .+|.... ..++++++++|||||.+++.+.
T Consensus 92 ~~~~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 92 FLNFP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEECC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 97654 4554321 5789999999999999999963
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-11 Score=113.04 Aligned_cols=98 Identities=8% Similarity=0.160 Sum_probs=71.9
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|..+..|+.. .. ....|+.+| ++.|++.+.++ |+ +..+.. ++..+| ..||+|++.
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~---d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG---DIRDIAIENASMVVLN 132 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeC---ChhhCCCCCCCEEehh
Confidence 35999999999999888762 00 123677777 57888777665 22 333322 223344 579999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+++|+.+ .+...++.||.|+|||||.++++|.
T Consensus 133 ~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999874 3467999999999999999999973
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.4e-11 Score=105.07 Aligned_cols=97 Identities=26% Similarity=0.337 Sum_probs=80.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|.|+|||+|..+..|+++ .++|+|.|+.|+ ..|+++..+..+..+|+.... ++..+|++++|. .+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-----a~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vl 102 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-----AKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VL 102 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-----HHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hh
Confidence 5679999999999999988876 677777776555 556677777778788876664 457899999765 59
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
||.+|-..+|.++...|.|||.+.+..+
T Consensus 103 qWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 103 QWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hhccccHHHHHHHHHhhCCCceEEEECC
Confidence 9999999999999999999999999954
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.7e-11 Score=116.38 Aligned_cols=93 Identities=24% Similarity=0.406 Sum_probs=71.3
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcC--c-ccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG--L-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg--~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
+|||+|||+|+++..++++ |+ .|+++| ++.+++.+.++. + +... ..+....+.+||.|++..+|+|+
T Consensus 170 rVLDIGcG~G~~a~~la~~~g~-----~V~giDlS~~~l~~A~~~~~~l~v~~~---~~D~~~l~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 170 RVLDIGCGWGGLARYAAEHYGV-----SVVGVTISAEQQKLAQERCAGLPVEIR---LQDYRDLNGQFDRIVSVGMFEHV 241 (383)
T ss_pred EEEEeCCCccHHHHHHHHHCCC-----EEEEEeCCHHHHHHHHHHhccCeEEEE---ECchhhcCCCCCEEEEeCchhhC
Confidence 5999999999999999976 44 677777 577888777653 2 1111 12222335799999999999998
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+ .++..++.++.|+|||||++++.+
T Consensus 242 g~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 242 GP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred Ch-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 64 356799999999999999999974
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=105.66 Aligned_cols=103 Identities=14% Similarity=0.025 Sum_probs=75.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHH------------HcCCCcEEEeccccCCCCC-CCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL------------ERGAPAMVAAFATRRLPYP-SQA 74 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~------------~~~~~~~~~~~d~~~lp~~-~~s 74 (402)
++.+|||+|||.|..+..|+++ .|+|+|+|+..+..++.+... .++....+.++|...++.. .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 5579999999999999999988 899999999877643211100 0122334567777666532 357
Q ss_pred eeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 75 FDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
||.|+...+++|+.++. ...++.+.++|||||.+++.+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 99999877777776554 679999999999999866664
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.7e-11 Score=109.88 Aligned_cols=97 Identities=19% Similarity=0.284 Sum_probs=72.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc--ccccccCCCCCCCCC-CcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL--IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~ 331 (402)
..|||+|||+|.++..|++.+..+ .++.+| ++.+++.+.++.. +..+..-.+.++ ++ ++||+|+|+.+++|.
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDAEKLP-LEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCC-CCCCceeEEEEhhhhhhc
Confidence 569999999999999999986432 355555 4566666655532 223333233433 45 899999999999997
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+ +..+|.++.|+|||||++++.+.
T Consensus 112 ~~---~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 112 DD---LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred cC---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 64 68999999999999999999863
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=104.28 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=70.7
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..+.+. .++|+|+++.++. .++++.....+...++.. |+++++||+|+++.+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~-----~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVE-----KAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHH-----HHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 5678999999999988877653 6888988876664 343332233455566666 88889999999998877
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.++ ...+++++.|++ ++++++..
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 87533 478999999998 46777764
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-10 Score=106.61 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=77.4
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHc-CCCc-E-EEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER-GAPA-M-VAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~-~~~~-~-~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
-.+++|||||||+|.++..++.+ .|+|+|.+..... +...+++. +... . .....++.+|. .++||+|+|..
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~--QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG 190 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYL--QFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG 190 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHH--HHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee
Confidence 46789999999999999888766 6889988765432 22333322 2222 2 22246788887 78999999998
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
++.|.. +|-..|.+++..|+|||.+++.|..
T Consensus 191 VLYHrr-~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 191 VLYHRR-SPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred ehhccC-CHHHHHHHHHHhhCCCCEEEEEEee
Confidence 877755 9999999999999999999998753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-11 Score=103.96 Aligned_cols=103 Identities=26% Similarity=0.446 Sum_probs=75.8
Q ss_pred cccccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CCCCCCeeEE
Q 015704 3 QINTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PYPSQAFDLI 78 (402)
Q Consensus 3 li~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-p~~~~sfDlI 78 (402)
.|..+-.++.+|||+|||.|.+..+|.+. ...|+|+++ +.+..+.++|++......+ +.+ .|++++||.|
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~-----~~v~~cv~rGv~Viq~Dld-~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP-----DNVAACVARGVSVIQGDLD-EGLADFPDQSFDYV 79 (193)
T ss_pred HHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCH-----HHHHHHHHcCCCEEECCHH-HhHhhCCCCCccEE
Confidence 46667778899999999999999999874 456677665 3446677788775444433 344 3899999999
Q ss_pred EecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCC
Q 015704 79 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVY 116 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~ 116 (402)
+.+.+ ++...+|..+|+|+.|+ |...+++ +|+.
T Consensus 80 Ilsqt-LQ~~~~P~~vL~EmlRV---gr~~IVs-FPNF 112 (193)
T PF07021_consen 80 ILSQT-LQAVRRPDEVLEEMLRV---GRRAIVS-FPNF 112 (193)
T ss_pred ehHhH-HHhHhHHHHHHHHHHHh---cCeEEEE-ecCh
Confidence 99887 44455899999999777 5566666 5544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.8e-10 Score=99.68 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=71.5
Q ss_pred CCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..++. ..++++|.++.++..+. +.+++.+.. ..+...|++.++ ..++||+|+|+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--
Confidence 467999999999988777653 26999999998775554 334444543 446667777664 357899999764
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. .+...+++.+.++|+|||.+++..
T Consensus 118 ~---~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 L---ASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence 2 256678899999999999999884
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=109.24 Aligned_cols=100 Identities=22% Similarity=0.334 Sum_probs=70.8
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+++.+|||||||.|.++..++++ .|+++.+|......+. +.+++.++. ..+...|..+++ .+||.|+|..+
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~ 136 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEM 136 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTSSSTEEEEES-GGG------S-SEEEEESE
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEeeccccC---CCCCEEEEEec
Confidence 46789999999999999999887 7888888765554433 344455654 335555655554 38999999999
Q ss_pred cccccc-ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTR-DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~-d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.|... +...+++++.++|||||.+++.+
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred hhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 888853 46899999999999999999875
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2e-10 Score=111.26 Aligned_cols=120 Identities=17% Similarity=0.166 Sum_probs=85.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..+++... ..+|+.+| ++++++.+.++.- +..++...+.+ +|+ ++||+|++.++++|
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~---~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVD---AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhh
Confidence 3699999999999988877521 12566666 5677877766521 33344333443 356 79999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeChh-----------------hHHHHHHHHHhcCceEEEeec
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-----------------VMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~-----------------~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+.+ +..+|.|+.|+|||||.+++.+... ..+.+.+.+++..++.....+
T Consensus 191 ~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 191 WPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 775 5789999999999999998875321 235666777777787554433
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-11 Score=98.90 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=65.6
Q ss_pred EEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c-ccccccCCCCCCCCC-CcccEEEEc-cccc
Q 015704 258 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L-IGVMHDWCEPFDTYP-RTYDLLHAA-GLFS 329 (402)
Q Consensus 258 vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~-~~~~~~~~~~~~~~~-~sfD~v~~~-~~~~ 329 (402)
|||+|||+|..+..+++.........++++| +++++..+.++. . +..++.-.+.++ ++ ++||+|+|+ .++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 7999999999999999773100124788888 678888887776 3 344444344433 33 699999995 5599
Q ss_pred cccccCCHHHHHHHhhhhccCCc
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGG 352 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG 352 (402)
|+.+ ...+.+|.++.++|||||
T Consensus 80 ~~~~-~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSP-EELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSH-HHHHHHHHHHHHTEEEEE
T ss_pred CCCH-HHHHHHHHHHHHHhCCCC
Confidence 9774 467899999999999998
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-10 Score=98.12 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=73.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+.... ...+....+...|....+ .++||+|+++..+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 4578999999999999888876 5899999998876665333 334444445555654433 4589999998776554
Q ss_pred ccC--------------------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 88 TRD--------------------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 88 ~~d--------------------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+ ...+++++.++|+|||.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 321 2467999999999999999985
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.7e-10 Score=108.94 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=71.7
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccCCCCCCCCeeEEEe
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlI~s 80 (402)
.+..++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+..++.... ....+ ..+..+++||+|++
T Consensus 155 ~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~-~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVva 231 (288)
T TIGR00406 155 DLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESAR-KNAELNQVSDRLQVKLIY--LEQPIEGKADVIVA 231 (288)
T ss_pred hhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHcCCCcceEEEecc--cccccCCCceEEEE
Confidence 34456789999999999888776643 6899999998886665 33444444332 22222 23344678999998
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.. . .....++.++.++|||||+++++..
T Consensus 232 n~~-~---~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 232 NIL-A---EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ecC-H---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 754 2 1346789999999999999999963
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-10 Score=104.54 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=71.0
Q ss_pred ceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
..|||+|||+|.++..|++. +. +++++| ++++++.+.++.- +..++.... .+++ ++||+|+|..+|+|
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~-----~v~giDiS~~~l~~A~~~~~~~~~~~~d~~--~~~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFK-----HIYGVEINEYAVEKAKAYLPNINIIQGSLF--DPFKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCC-----eEEEEECCHHHHHHHHhhCCCCcEEEeecc--CCCCCCCEEEEEECChhhh
Confidence 45999999999999999886 33 677777 6788888877422 223332222 2566 79999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+. +.++..++.||.|++ ++++++.+
T Consensus 118 l~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 118 IN-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CC-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 96 456789999999998 57888875
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-10 Score=109.33 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=84.1
Q ss_pred hhhHHhhHHHHHHHHHHHHhc-c-cCCCCcceEEeccccchH----HHHHHhhcCCC--ceEEEeccCC-CCCChhhHHh
Q 015704 228 ELFKAESKYWNEIIESYVRAL-H-WKKMKLRNVLDMRAGFGG----FAAALIEQKFD--CWVMNVVPVS-GFNTLPVIYD 298 (402)
Q Consensus 228 ~~~~~~~~~w~~~~~~y~~~~-~-~~~~~~~~vLD~g~g~G~----~~~~l~~~~~~--~~~~~v~~~~-~~~~~~~~~~ 298 (402)
..|-++...|....+.....+ . ...++--+|+|+|||+|. +|..|++.+.. -+...|+++| ++.+++.|.+
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 445555566665555433221 1 112233469999999995 56566654321 1345788888 6788887765
Q ss_pred cCc----------------------------------ccc-cccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHH
Q 015704 299 RGL----------------------------------IGV-MHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIML 342 (402)
Q Consensus 299 rg~----------------------------------~~~-~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~ 342 (402)
. . +.. .|+..+ +++| ++||+|+|.+||.|+++ .+...++.
T Consensus 151 ~-~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~ 226 (264)
T smart00138 151 G-IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDE-PTQRKLLN 226 (264)
T ss_pred C-CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCH-HHHHHHHH
Confidence 2 1 111 223222 2345 79999999999999974 34568999
Q ss_pred HhhhhccCCcEEEEEeCh
Q 015704 343 EMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 343 e~~RvLrpgG~~~~~~~~ 360 (402)
++.|+|||||++++-...
T Consensus 227 ~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 227 RFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHhCCCeEEEEECcc
Confidence 999999999999998655
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-10 Score=106.03 Aligned_cols=105 Identities=16% Similarity=0.235 Sum_probs=80.4
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+++.+|||||||.|.++.+++++ .|+|+++|......+. +.+++.+.. ..+...|..++ .+.||-|+|..+
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~gl~~~v~v~l~d~rd~---~e~fDrIvSvgm 146 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARGLEDNVEVRLQDYRDF---EEPFDRIVSVGM 146 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcCCCcccEEEecccccc---ccccceeeehhh
Confidence 47889999999999999999876 7889999887766555 444456665 23334444444 345999999999
Q ss_pred ccccccC-hHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 015704 84 RINWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYK 117 (402)
Q Consensus 84 ~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~~~~~ 117 (402)
+.|+... ...+|+.+.++|+|||.+++-+.....
T Consensus 147 fEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 147 FEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 8888754 589999999999999999998654444
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-10 Score=101.17 Aligned_cols=101 Identities=20% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
...++||+|||.|.++..|+.+ .++++|+++..+..+..+.+. .....+...++... .|+++||+|+++.+++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 3468999999999999999988 889999987665444322211 12234566665443 467899999999987776
Q ss_pred cc--ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 88 TR--DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 88 ~~--d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+ +...++..+...|+|||.+++.+.
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 53 346789999999999999999863
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-10 Score=101.85 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=70.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-----c-cc-ccccCCCCCCCCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----L-IG-VMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-----~-~~-~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.||.+|||+|.---++-... ...|+.+| +++|-+++..+- + +. .++...|.++..+ .|+|.|+|.-+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p----~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKP----INSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ceEEecccCCCCcccccCCC----CceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 38999999998776665331 12555555 356665544331 1 33 6777788888888 79999999888
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
|--.. +++.+|+|+.|+|||||.+++-+-
T Consensus 155 LCSve---~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 155 LCSVE---DPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred EeccC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 75533 579999999999999999999864
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=97.45 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=89.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.+|||+|||+|.++..++..+. .|+.+| ++.+++.+.++ ++ +..++.-.. ...+.+||+|++...+.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~--~~~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLF--KGVRGKFDVILFNPPYL 93 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccc--cccCCcccEEEECCCCC
Confidence 3599999999999999999874 566666 45566544442 22 222322111 11237999999998776
Q ss_pred cccccC------------------CHHHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHhcCceEEEeecCCCCCCce
Q 015704 330 VESKRC------------------NMSTIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRETAEGPHASY 390 (402)
Q Consensus 330 ~~~~~~------------------~~~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 390 (402)
+..+.. .+..+|.++.|+|||||.+++.+.... ...+.+.+++..|+........ -+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~---~~~ 170 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG---LFF 170 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee---cCc
Confidence 654310 145789999999999999999876544 6677788888888888776532 244
Q ss_pred EEEEEEe
Q 015704 391 RILTADK 397 (402)
Q Consensus 391 ~~l~~~k 397 (402)
.-|++-|
T Consensus 171 ~~~~~~~ 177 (179)
T TIGR00537 171 EELFAIK 177 (179)
T ss_pred eEEEEEE
Confidence 4555555
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-10 Score=101.79 Aligned_cols=116 Identities=15% Similarity=0.298 Sum_probs=77.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|+..+. ...|+++| ++++++.+. +.|+ +..++...+.++ .+++||+|+|.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~---~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARP---ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCC---CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h
Confidence 3699999999999998876542 12566666 455554332 2344 444444344432 247999999975 2
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHh---cCceEEEeec
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKA---MGWHVTLRET 382 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~---~~w~~~~~~~ 382 (402)
.++..++.++.|+|||||.+++.........+..+.++ ..-+....+.
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccc
Confidence 23568899999999999999999877666666666666 3344444443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.2e-10 Score=101.70 Aligned_cols=98 Identities=21% Similarity=0.269 Sum_probs=73.3
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+..+. ...+. ...+...|+..++ ++||+|+++.+++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~-~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRA-QGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 4679999999999999988865 7899999988876665333 22332 3345666666654 7899999988877
Q ss_pred cccc-ChHHHHHHHHHhcCCCeEEEEE
Q 015704 86 NWTR-DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 86 ~~~~-d~~~~l~e~~r~LkpgG~li~~ 111 (402)
|+.. +...+++++.+++++++++.+.
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 7753 3578899999999987766654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-10 Score=107.02 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEccccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~ 331 (402)
..+|||+|||+|.++..|++...+.....|+++| ++++++.+.++.- +..+....+.+ +|+ ++||+|++...
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEEecC----
Confidence 3569999999999999998763221123678888 6788888877642 33333223343 466 79999998521
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
...+.|+.|+|||||++++..+.
T Consensus 161 ------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 161 ------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ------CCCHHHHHhhccCCCEEEEEeCC
Confidence 13468999999999999998765
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.6e-11 Score=120.37 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=73.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c-ccccccCCCCCCC-CC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L-IGVMHDWCEPFDT-YP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~-~~~~~~~~~~~~~-~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|+++. ...+|+++| ++.|++.+.++. . +..+...+..++. |+ ++||+|+++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~---P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET---EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 469999999999999998763 234777777 567787776542 1 2223333334442 56 89999999988
Q ss_pred ccccc----------ccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVES----------KRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~----------~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|+. +..++..+|.++.|+|||||.+++.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 87652 123568999999999999999999974
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-10 Score=106.70 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=78.9
Q ss_pred HhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCcccccccCCCCCCCCCCccc
Q 015704 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGLIGVMHDWCEPFDTYPRTYD 320 (402)
Q Consensus 246 ~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~~~~~~~~~~~~~~~~~sfD 320 (402)
+.+.+.+|. +|||||||.|+++.++|++. +| +|++++ |.++.. .+.++|+-..++-..++..+++..||
T Consensus 66 ~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y-~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD 139 (283)
T COG2230 66 EKLGLKPGM--TLLDIGCGWGGLAIYAAEEY-GV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD 139 (283)
T ss_pred HhcCCCCCC--EEEEeCCChhHHHHHHHHHc-CC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence 445666664 39999999999999999983 23 555555 445553 45566884344333344456666699
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
-|+|-.+|+|+.. .+....+.-++++|+|||.+++-.
T Consensus 140 rIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 140 RIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEE
Confidence 9999999999984 578899999999999999999863
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.9e-10 Score=101.41 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=70.8
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+....+...|... .+++++||+|+++..+..
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 4579999999999988877653 6899999987775554 3333344444455556543 345678999999854332
Q ss_pred cccC--------------------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 87 WTRD--------------------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~~d--------------------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
-... ...+++++.++|||||.+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2110 2457888999999999999874
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.3e-10 Score=108.89 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=69.8
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC----cEEEeccccCCCCCCCCeeEEEecC
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~----~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
..+|||+|||+|.++..++++ .++++|+++.++..++... ...+.. ..+...|... .+++++||+|+||.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~-~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNP 306 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV-ETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNP 306 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCcccCceEEEEEccccc-cCCCCCEEEEEECc
Confidence 359999999999999888764 7999999987776655333 233321 2333334321 13446899999987
Q ss_pred cccccc--cC--hHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWT--RD--DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~--~d--~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.++.-. .+ ..++++++.++|+|||.+++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 754321 11 2578999999999999999995
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=90.42 Aligned_cols=98 Identities=18% Similarity=0.105 Sum_probs=69.3
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC-CCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-LPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~-lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++..+..+.. .+...+.. ..+...+... ++...++||.|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER-NARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH-HHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 4569999999999998888764 68999999877765553 33333333 3344444433 3333468999998643
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. .....+++++.+.|+|||.+++..
T Consensus 98 ~----~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 G----GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred c----hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 1 134689999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-10 Score=103.87 Aligned_cols=98 Identities=24% Similarity=0.382 Sum_probs=71.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc--Cc---ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR--GL---IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r--g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.+|||+|||.|.++..+++... ...+++.+| ++.+++.+..+ +. +.....-.+.+ +++ .+||+|++.+++
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~--~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVG--PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL-PFPDGSFDAVRSDRVL 97 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC-CCCCCCceEEEEechh
Confidence 4699999999999999987631 112566666 56667777665 11 22222222222 355 799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|+.+ +..++.++.++|||||++++.+.
T Consensus 98 ~~~~~---~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 98 QHLED---PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hccCC---HHHHHHHHHHHhcCCcEEEEEec
Confidence 99875 68999999999999999998763
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.5e-08 Score=94.43 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=81.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCcccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
+|||+|||+|.++..+++++.. ..|+.+| +..+++.+.+ .++-..+.. ...+...+++||+|+|.--|++.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~---~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~-~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK---IRLTLSDVSAAALESSRATLAANGLEGEVFA-SNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCEEEE-cccccccCCCccEEEECCCccCC
Confidence 5999999999999999988532 2455665 4455554433 243222211 11122234799999998877653
Q ss_pred cc--cCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 332 SK--RCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 332 ~~--~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
.+ ....+.++.++.|.|||||.++|-.+. --...+++.... .++...+ .+.+|+-++|.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~--~~~la~~------~~f~v~~a~~~ 337 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS--HEVLAQT------GRFKVYRAIMT 337 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC--eEEEEeC------CCEEEEEEEcc
Confidence 21 123578999999999999999987643 113344444432 2444322 36889888873
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-10 Score=103.70 Aligned_cols=126 Identities=19% Similarity=0.191 Sum_probs=84.1
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
..+|||+|||.|.++..+++. .++-+|++...+..++ .....++... .+...+ ...+..+ +||+|+||..++
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar-~Nl~~N~~~~~~v~~s~-~~~~v~~-kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR-KNLAANGVENTEVWASN-LYEPVEG-KFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH-HhHHHcCCCccEEEEec-ccccccc-cccEEEeCCCcc
Confidence 348999999999999988875 6777888876665554 3444455555 333333 2233333 999999998866
Q ss_pred ccccCh----HHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhccee
Q 015704 86 NWTRDD----GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWE 139 (402)
Q Consensus 86 ~~~~d~----~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~ 139 (402)
.-..-. .+++.+..+.|++||.|.+...........+.+.|...+.+++.-+|.
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~la~~~gf~ 293 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVLAKNGGFK 293 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEEEeCCCEE
Confidence 543222 388999999999999999997533344455566665555444444443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=99.46 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sf 75 (402)
.++.+|||+|||+|.++..+++. .|+++|+++. . ......+..+|+...+ +.+++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~----------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D----------PIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c----------CCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 45679999999999998887664 6899999871 1 1112446666766642 567899
Q ss_pred eEEEecCcccccccCh-----------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 76 DLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~-----------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|+|+.+ .++..++ ..+++++.++|||||.|++..+
T Consensus 119 D~V~S~~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 119 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CEEecCCC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99998643 4444332 3588999999999999999864
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-10 Score=107.14 Aligned_cols=105 Identities=22% Similarity=0.318 Sum_probs=74.7
Q ss_pred cccccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC-CCeeEE
Q 015704 3 QINTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-QAFDLI 78 (402)
Q Consensus 3 li~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~-~sfDlI 78 (402)
.+..+.+++.+|||+|||+|-++...+.. .++|+|+++..+..++ +.++.++............+..+. ++||+|
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvI 233 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVELLVQAKGFLLLEVPENGPFDVI 233 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCchhhhcccccchhhcccCcccEE
Confidence 34556678999999999999877666543 7999999998886665 666666665311111111222233 589999
Q ss_pred EecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++|-.+. -...+..++.+.|||||++++|.
T Consensus 234 VANILA~----vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 234 VANILAE----VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred EehhhHH----HHHHHHHHHHHHcCCCceEEEEe
Confidence 9985321 23688899999999999999996
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.6e-10 Score=107.67 Aligned_cols=101 Identities=17% Similarity=0.273 Sum_probs=78.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC--CCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL--PYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~l--p~~~~sfDlI~s~~ 82 (402)
.+..+||||||+|.++..++.+ .++|+|++..++..+. +.+...++.+. +...|+..+ .++++++|.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~-~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVL-KQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4568999999999999888864 7999999998887666 44455565543 566665443 47789999999865
Q ss_pred cccccccCh------HHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDD------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~------~~~l~e~~r~LkpgG~li~~~ 112 (402)
. .+|.... ..++.+++|+|+|||.+.+.|
T Consensus 201 P-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 P-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred C-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4 5565332 578999999999999999997
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5e-10 Score=103.69 Aligned_cols=99 Identities=11% Similarity=0.163 Sum_probs=70.6
Q ss_pred CcceEEeccccchHHHHHHhhc----CCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCCCCCCcccEEEEc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~----~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~~~~~sfD~v~~~ 325 (402)
+-.+|||+|||+|.++..|++. | ...+|+++| ++++++.+.++.. +......++.++.-+++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDG---LRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCC---CCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 4457999999999998888752 3 234788888 6888988877632 122222223333323799999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+|+|+.+. +...+|.||.|++| |.+++.|
T Consensus 137 ~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 999999863 35689999999999 5555554
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-10 Score=108.19 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=68.0
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
+|||+|||.|..+..++.. +. ...|+.+| ++.+++.+.++ |+ +..++...+.+ +++ ++||+|++..+
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g~---~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVGP---TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-PVADNSVDVIISNCV 155 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhCC---CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-CCCCCceeEEEEcCc
Confidence 6999999999877665543 32 12466666 46777776654 32 22233223333 366 79999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++|..+ ...++.|+.|+|||||++++++
T Consensus 156 ~~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 988764 5799999999999999999975
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=99.74 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=74.9
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++..+..+..... ......+...++..+++++++||+|+++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 5679999999999988877653 57888888755543332211 1122345666777788777899999987764
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+...++..+++++.+.|+|||.+++...
T Consensus 117 -~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 -RNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred -CCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4455889999999999999999998754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=105.42 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=92.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc------CCCcEEEeccccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER------GAPAMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~------~~~~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|.++..+++. .|+++|+++.++..+..+. ... .....+...|.+.+ +++||+|+|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~-~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRA-KEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 4679999999999999888876 6999999998887666433 222 11223445554433 4789999999
Q ss_pred CcccccccCh-HHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhh
Q 015704 82 RCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYL 160 (402)
Q Consensus 82 ~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
.+++|+..+. ..+++.+.+ +.+||. +++..+... . ...++.+... |. ........|..+..+...+
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~-~---~~~l~~~g~~-----~~--g~~~~~r~y~~s~eel~~l 286 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTL-Y---YDILKRIGEL-----FP--GPSKATRAYLHAEADVERA 286 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcch-H---HHHHHHHHhh-----cC--CCCcCceeeeCCHHHHHHH
Confidence 8888876543 345666665 455555 445333211 1 1111111110 10 0011122343344567778
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccccce
Q 015704 161 NREAGTIPPLCDPDDNPDNVWYVDLKAC 188 (402)
Q Consensus 161 l~~aGf~~~~~~~~~~~~~~~y~~~~~~ 188 (402)
++++||.+..+. ......||.-+.+|
T Consensus 287 L~~AGf~v~~~~--~~~~~~y~~~l~~~ 312 (315)
T PLN02585 287 LKKAGWKVARRE--MTATQFYFSRLLEA 312 (315)
T ss_pred HHHCCCEEEEEE--EeecceeHHhhhhh
Confidence 999999754332 33334445544443
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-10 Score=105.58 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=72.8
Q ss_pred CCCeEEEECCccch----hHHHHcc---------CCceEEeCCccchHHHHHHHH---HHcCC-----------------
Q 015704 10 LLRVVMDAGCGVAS----FGAYLLP---------RNVITMSIAPKDVHENQIQFA---LERGA----------------- 56 (402)
Q Consensus 10 ~~~~VLDiGcG~G~----~~~~L~~---------~~v~~vdi~~~~~~~a~~~~a---~~~~~----------------- 56 (402)
++.+|+|+|||+|. ++..+.+ ..++|+|+++.++..+....- .-++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 3433332 268899999887765543110 00000
Q ss_pred -------CcEEEeccccCCCCCCCCeeEEEecCccccccc-ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 57 -------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 57 -------~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~-d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+...|+...+++.++||+|+|.++++|+.. +...++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 234556677777777889999999988777753 23689999999999999999984
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.1e-10 Score=109.50 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=72.1
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||||||+|.++..+++. .|+++|+++.++..+... + .+....+...|...+ +++||.|++..++.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~-~--~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~e 239 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQER-C--AGLPVEIRLQDYRDL---NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h--ccCeEEEEECchhhc---CCCCCEEEEeCchh
Confidence 35679999999999999888764 688899887666444322 1 123333444454443 47899999987766
Q ss_pred cccc-ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTR-DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~-d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|... +...+++++.++|||||.+++.+.
T Consensus 240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred hCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 6542 357899999999999999999863
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=97.08 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=84.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..++.++.+ ..|+.+| ++.+++.+.++ ++ +..+.... ...++.+||+|++....
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~--~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPS---LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA--PIELPGKADAIFIGGSG 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc--hhhcCcCCCEEEECCCc
Confidence 36999999999999999887421 2566665 34555555432 32 22222211 12345789999998654
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCceE-EEee------------cCCCCCCceEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHV-TLRE------------TAEGPHASYRILT 394 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w~~-~~~~------------~~~~~~~~~~~l~ 394 (402)
. .+..++.++.|+|||||++++.. .......+.+++++..|+. ..+. .-+++..|.-+++
T Consensus 108 ~------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (187)
T PRK08287 108 G------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSLTPLGAGHYFKPNNPTFIIS 181 (187)
T ss_pred c------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEeeeEcCcceeeccCCCEEEEE
Confidence 3 34678999999999999999976 3444666777787777752 2111 1133555666667
Q ss_pred EEec
Q 015704 395 ADKR 398 (402)
Q Consensus 395 ~~k~ 398 (402)
++|+
T Consensus 182 ~~~~ 185 (187)
T PRK08287 182 CQKE 185 (187)
T ss_pred EEcC
Confidence 7763
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-10 Score=101.72 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=80.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCC-CCCCC-CC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWC-EPFDT-YP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~-~~~~~-~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|+++.. ..+|+++| ++.+++.+.++ ++ +..++... +.++. ++ .+||+|++.
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p---~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANP---DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCC---CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5699999999999999988632 12566766 56666655442 33 33344333 33332 55 799999986
Q ss_pred ccccc-----ccccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCceEEEee
Q 015704 326 GLFSV-----ESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 326 ~~~~~-----~~~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
..... -..+.....+|.++.|+|||||++++.. .......+.+.+.+-.|.+...+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSEA 180 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccccc
Confidence 43221 1111224789999999999999999975 44555566666666677777443
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-09 Score=98.44 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=76.0
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++. ..++++|+++..+..+........ .....+...|...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 457999999999998877654 368899998876655543322211 12234566677777777789999998876
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++ ..++...+.++.++|+|||.+++...
T Consensus 131 l~~-~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRN-VPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccc-CCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 444 45889999999999999999988753
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-11 Score=105.28 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=93.8
Q ss_pred cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCccccc-ccCCCCCCC-C-CCcccEEEEc
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVM-HDWCEPFDT-Y-PRTYDLLHAA 325 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~-~~~~~~~~~-~-~~sfD~v~~~ 325 (402)
...+.++.+||+|||+|-++..|.+.-. .++++| |.||+..|.++|+...+ +.-...|.. . ++.||+|.+.
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~-----~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMAD-----RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAA 195 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHh-----hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhh
Confidence 3456699999999999999999988754 788999 89999999999993222 111122332 2 3799999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------hhHHHHHHHHHhcCceEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------~~~~~~~~~~~~~~w~~~~~ 380 (402)
.||.|+.+ ++.++.=..+.|.|||.|++|... -....++..+.+-..++...
T Consensus 196 DVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 196 DVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred hHHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 99999885 588999999999999999999421 11446677777777776554
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=7e-10 Score=102.71 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=68.5
Q ss_pred CCCCeEEEECCccchhHHHHcc--------CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~--------~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..|++ ..++++|+++.++..+... ....+ ..+...+.+.++.++++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~-~~~~~--~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARAN-PRRPG--VTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhc-cccCC--CeEEEEecccccccCCCccEEEE
Confidence 3567999999999998877753 1688999988776544322 11112 23334455566667789999999
Q ss_pred cCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.+++|+.++ ...+++++.|+++ |.+++..
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 9887776532 3579999999998 5555553
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=92.72 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=84.4
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
....+|||+|||+|.+...|++. ..+|+|.++..+.-|+ ..|+..+.+ ..+.+.|+..-.+..+.||+|+--.
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecC
Confidence 34459999999999999999876 4778888887776554 667777766 4577778766566678888887422
Q ss_pred cc--cccccC-----hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHH
Q 015704 83 CR--INWTRD-----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWK 127 (402)
Q Consensus 83 ~~--~~~~~d-----~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~ 127 (402)
.+ +.++++ +...+..+.++|+|||+|+|++ +..+..|+.+.+.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--CN~T~dELv~~f~ 194 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--CNFTKDELVEEFE 194 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe--cCccHHHHHHHHh
Confidence 21 112222 2457889999999999999995 7788888877653
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-09 Score=96.63 Aligned_cols=136 Identities=14% Similarity=0.134 Sum_probs=75.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccc-cCCCCC------CCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMH-DWCEPF------DTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~-~~~~~~------~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|+++..++++... ...|..+|...+. ...++ ..+. +..+.- ..++ ++||+|++...
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~--~~~v~~vDis~~~---~~~~i-~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGG--KGRVIAVDLQPMK---PIENV-DFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCC--CceEEEEeccccc---cCCCc-eEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 35999999999999998876321 1123444421111 11122 1121 221110 1245 68999998543
Q ss_pred --------cccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecCCC-CCCceEEEEEEe
Q 015704 328 --------FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEG-PHASYRILTADK 397 (402)
Q Consensus 328 --------~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~l~~~k 397 (402)
+.|....++.+.+|.++.|+|||||++++.... .....+-..++..=|.+...+.-.+ ....|++++|+.
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKR 187 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEec
Confidence 222221223468999999999999999995321 1122222222222366666655444 444599999963
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=104.53 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=77.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
.+|||+|||+|.++..+++.|. ..|.++| ++.+++.+.++ ++-..+.........++ .+||+|+|..+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~----~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA----AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 4699999999999999888764 1566666 45666655543 22111111111123344 7999999974432
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeec
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+ +..++.++.|+|||||+++++.-. +..+.+.+.+++. |++....+
T Consensus 237 ~------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 237 V------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred H------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeEec
Confidence 2 357899999999999999999743 3455666766766 87765544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=99.26 Aligned_cols=98 Identities=14% Similarity=0.055 Sum_probs=73.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC----------------CcEEEeccccCCCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA----------------PAMVAAFATRRLPYP 71 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~----------------~~~~~~~d~~~lp~~ 71 (402)
++.+|||+|||.|..+..|+++ .|+|+|+++..+..++ ++++. ...+.++|+..++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~----~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF----AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH----HHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 4569999999999999999987 8999999987775443 22222 233556676666432
Q ss_pred -CCCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEE
Q 015704 72 -SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 72 -~~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~ 111 (402)
.+.||+|+...+++++..+. ..+++.+.++|+|||.+++.
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 35899999877777776543 68999999999999975554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=97.34 Aligned_cols=134 Identities=12% Similarity=0.115 Sum_probs=76.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCC-------CCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFD-------TYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~-------~~~-~sfD~v~~~~~ 327 (402)
..|||+|||+|.++..++++..+ ...|+++|-..+... .++ ..++.-.+... .++ .+||+|+|.-.
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~--~~~V~aVDi~~~~~~---~~v-~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGD--KGRVIACDILPMDPI---VGV-DFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCC--CceEEEEecccccCC---CCc-EEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 36999999999999999887311 113444442112111 122 22322222211 244 79999999755
Q ss_pred cccccccC-C-------HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhc--CceEEEeecCCC--CCCceEEEEE
Q 015704 328 FSVESKRC-N-------MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAM--GWHVTLRETAEG--PHASYRILTA 395 (402)
Q Consensus 328 ~~~~~~~~-~-------~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~--~w~~~~~~~~~~--~~~~~~~l~~ 395 (402)
.....+.. + .+.+|.++.|+|||||.|++..-. -+.+.+++..+ +|+......... +.-.|.+++|
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~--~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~ 204 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ--GEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVA 204 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec--CcCHHHHHHHHHhCceEEEEECCccccccCceeEEEe
Confidence 44432210 1 246899999999999999997533 22333344443 555443332222 3345999998
Q ss_pred Ee
Q 015704 396 DK 397 (402)
Q Consensus 396 ~k 397 (402)
+.
T Consensus 205 ~~ 206 (209)
T PRK11188 205 TG 206 (209)
T ss_pred ec
Confidence 64
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=101.76 Aligned_cols=135 Identities=18% Similarity=0.288 Sum_probs=85.4
Q ss_pred CCCCCCcccCCCCcccccccccccccchhhhHHhhHHHHHHHHHHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCc
Q 015704 200 NVSLWPERLRTSPDRLQSIQLDAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDC 279 (402)
Q Consensus 200 ~~~~Wp~rl~~~~~rl~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~ 279 (402)
.+.||-+ -|=.+-.+.++. || +..-+|+....++. .-.| +.|||||||.|.+.-.|+.+|+.
T Consensus 78 ~l~PWRK----GPf~l~gi~IDt-----EW--rSd~KW~rl~p~l~----~L~g--k~VLDIGC~nGY~~frM~~~GA~- 139 (315)
T PF08003_consen 78 ALMPWRK----GPFSLFGIHIDT-----EW--RSDWKWDRLLPHLP----DLKG--KRVLDIGCNNGYYSFRMLGRGAK- 139 (315)
T ss_pred hhCCccc----CCcccCCEeecc-----cc--cccchHHHHHhhhC----CcCC--CEEEEecCCCcHHHHHHhhcCCC-
Confidence 3567733 334454455543 65 23335555444442 2234 35999999999999999999873
Q ss_pred eEEEeccCCCCCChhhHHhcCccc------ccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcE
Q 015704 280 WVMNVVPVSGFNTLPVIYDRGLIG------VMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGH 353 (402)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~rg~~~------~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~ 353 (402)
.|+.+.|..- -.+|+.+-+.+++ .+--.-|.++. .++||+|+|.+||-|.. +|...|.++...|||||.
T Consensus 140 ~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr---~Pl~~L~~Lk~~L~~gGe 214 (315)
T PF08003_consen 140 SVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRR---SPLDHLKQLKDSLRPGGE 214 (315)
T ss_pred EEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccC---CHHHHHHHHHHhhCCCCE
Confidence 4555555432 1223222222211 11112244444 58999999999999955 579999999999999999
Q ss_pred EEEE
Q 015704 354 VYIR 357 (402)
Q Consensus 354 ~~~~ 357 (402)
+|+-
T Consensus 215 LvLE 218 (315)
T PF08003_consen 215 LVLE 218 (315)
T ss_pred EEEE
Confidence 9987
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-09 Score=98.89 Aligned_cols=95 Identities=22% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
..++.+|||+|||+|.++..+... .++++|+++.++..+. +.+..++....+. ++..+.+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~-~n~~~~~~~~~~~------~~~~~~~fD~Vvani~- 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAR-ENAELNGVELNVY------LPQGDLKADVIVANIL- 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHcCCCceEE------EccCCCCcCEEEEcCc-
Confidence 356789999999999888776654 4899999998876665 3333444321111 1111227999998743
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. .....++.++.++|||||.++++..
T Consensus 189 ~---~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 189 A---NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred H---HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1 1246789999999999999999953
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=96.90 Aligned_cols=96 Identities=19% Similarity=0.081 Sum_probs=67.9
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
.++.+|||+|||+|..+..+++ ..++++|+++.+...+. +.....+.. ..+...|........++||.|+++
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~-~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA-QNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 3567999999999998877654 26899999987776554 333344443 345556655543345789999987
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....+. ..++.+.|+|||.+++..
T Consensus 150 ~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 664333 257889999999998874
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-09 Score=100.98 Aligned_cols=95 Identities=25% Similarity=0.370 Sum_probs=67.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+..... ..+. ...+...| ++..+++||+|+++.+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP-EAGLAGNITFEVGD---LESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCccCcEEEEcC---chhccCCcCEEEEcchhh
Confidence 4679999999999999888765 78999999888766654332 2333 23344444 444568899999988877
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEE
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYF 108 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~l 108 (402)
|+..+ ....++++.+.+++++.+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEE
Confidence 76633 467888888877544443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.7e-10 Score=100.22 Aligned_cols=120 Identities=16% Similarity=0.097 Sum_probs=75.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhH-HhcCccc--------------ccccCCCCCCCCC---
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVI-YDRGLIG--------------VMHDWCEPFDTYP--- 316 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~-~~rg~~~--------------~~~~~~~~~~~~~--- 316 (402)
++|||+|||.|..+.+||++|+ +|+++| ++..++.+ .+.|+.. .+.-.+.++..++
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~-----~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH-----RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC-----eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3699999999999999999999 455555 34444432 2333210 0111122222222
Q ss_pred -CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE---eC-------h--hhHHHHHHHHHhcCceEEEeec
Q 015704 317 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR---DS-------I--DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 317 -~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~---~~-------~--~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
..||.|+...+|.|++ ......++..|.|+|||||++++- .. . ...+.+.+.+. -+|++..-+.
T Consensus 111 ~~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 111 LGPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred CCCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence 4799999999999997 345578999999999999974443 11 1 12344555443 3677776554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-09 Score=101.12 Aligned_cols=102 Identities=8% Similarity=0.149 Sum_probs=74.5
Q ss_pred CCCeEEEECCccchhHHHHcc------CCceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLP------RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~------~~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
++++|+|||||.|.++..+.. ..++++|+++.++..++....+..++. ..+...|+.+.+-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998855433322 158899999988776663332334432 346666665543234789999988
Q ss_pred Ccccccc-cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWT-RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~-~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++++|. .+..++++++++.|+|||.+++.+
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 777774 578999999999999999999985
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-09 Score=97.78 Aligned_cols=102 Identities=17% Similarity=0.305 Sum_probs=75.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCC-CCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYP-SQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~-~~sfDlI~s~~~~~ 85 (402)
.+.+|||+|||+|.++..+++. .++++|+++.++..+... ....+. ...+...+....+.+ +++||+|+++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLH-AKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHH-HHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4679999999999988877654 688999988776555432 223333 244555565555543 37899999887644
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+ ..++..+++++.++|+|||.+++++.
T Consensus 124 ~-~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 124 H-VPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred h-CCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 4 45889999999999999999999853
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=98.33 Aligned_cols=102 Identities=16% Similarity=0.317 Sum_probs=74.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-CCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp-~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+.+. .++++|+++..+..+.... ...+....+...+....+ ..+++||+|+++.++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 5679999999999998877765 6888999877665444222 222333344445555443 34578999999877555
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. .++..+++.+.+.|+|||.++++.+
T Consensus 127 ~-~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 127 V-PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 4 4888999999999999999999864
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-09 Score=92.21 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=68.3
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+.. ..+...+.. .++ .++||+|++....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~-~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIK-ENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCc
Confidence 5679999999999998877653 7899999988776655 333333333 234444432 233 3589999986532
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.....++.++.+.|+|||.+++..
T Consensus 108 ----~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 108 ----GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 235678999999999999999874
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-09 Score=103.82 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=72.3
Q ss_pred cccccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEE
Q 015704 3 QINTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIH 79 (402)
Q Consensus 3 li~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~ 79 (402)
++..+..++.+|||+|||||-++...+.. .|+++|+++..+..+. +.+..++....+...... ....+.||+|+
T Consensus 154 ~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~v~~~~--~~~~~~~dlvv 230 (295)
T PF06325_consen 154 LLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIEVSLSE--DLVEGKFDLVV 230 (295)
T ss_dssp HHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEEESCTS--CTCCS-EEEEE
T ss_pred HHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEEEEEec--ccccccCCEEE
Confidence 45566677889999999999776555443 7999999998776665 556666665544332222 23348999999
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|.... -....+..+.++|+|||++++|..
T Consensus 231 ANI~~~----vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 231 ANILAD----VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EES-HH----HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred ECCCHH----HHHHHHHHHHHhhCCCCEEEEccc
Confidence 875411 236788889999999999999964
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-10 Score=102.69 Aligned_cols=97 Identities=24% Similarity=0.345 Sum_probs=73.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEecccc-CCC-CCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RLP-YPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~-~lp-~~~~sfDlI~s~~~~~ 85 (402)
+..++||+|||||..+..|... +++|+|+|. +|+..+.+++.-....+.+.. .++ ..++.||+|++..+ +
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~-----nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l 198 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISE-----NMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-L 198 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhH-----HHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH-H
Confidence 4789999999999998888765 666666664 555777787765444444332 222 45678999998887 4
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+..+++.++.-+...|+|||.|.||.
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 445589999999999999999999995
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-09 Score=98.29 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=67.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc------EEEeccccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA------MVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~------~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
..+.++|+|||+|..++.++.. +|+++|+++.|+ +.+.+..... .....+...|--.++|.|+|+|.
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL-----~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAML-----KVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhhhheeecCCHHHH-----HHhhcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 3348999999999777777765 899999887655 4554432111 11222233333348999999988
Q ss_pred CcccccccChHHHHHHHHHhcCCCe-EEEEE
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGG-YFAWA 111 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG-~li~~ 111 (402)
.+ .||. |.++++++++|+||+.| .+.+-
T Consensus 108 qa-~HWF-dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 108 QA-VHWF-DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hh-HHhh-chHHHHHHHHHHcCCCCCEEEEE
Confidence 76 8898 89999999999999877 54443
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-09 Score=96.77 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=72.1
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-------ccccccCCCCCCCCCCcccEEEEcc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-------IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-------~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
-.+|||+|||.|.++..|++++. .|+++| +++++..+.++.. +...+. ++...+++||+|.+..
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~-----~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~~~fD~ii~~~ 127 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA-----IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVN---DLLSLCGEFDIVVCMD 127 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC---ChhhCCCCcCEEEEhh
Confidence 45699999999999999998875 566666 5677777766521 222322 2233348999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++.|.+. .++..++.++.|+++||+++.+...
T Consensus 128 ~l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 128 VLIHYPA-SDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HHHhCCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 9999863 4578999999999999988887643
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.2e-09 Score=91.93 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=85.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccc-cccCCCCCCCCC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGV-MHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~-~~~~~~~~~~~~-~sfD~v~~ 324 (402)
.+|||+|||.|.++..|+.++. +|+.+| +++++..+.++ ++ +.. ..++. ..++ .+||+|.+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~d~vi~ 96 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF---EPFRGDKFDVILF 96 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc---ccccccCceEEEE
Confidence 3699999999999999999876 556655 45555554322 22 112 22333 3345 58999998
Q ss_pred ccccccccc------------------cCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecCCC
Q 015704 325 AGLFSVESK------------------RCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 325 ~~~~~~~~~------------------~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~ 385 (402)
...+.+..+ ...+..++.++.|+|||||.+++-.+. .....+...+.+..|++.......-
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 176 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKF 176 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeeccc
Confidence 755433110 112457899999999999998886543 2356788888888998766544333
Q ss_pred CCCceEEEEEEe
Q 015704 386 PHASYRILTADK 397 (402)
Q Consensus 386 ~~~~~~~l~~~k 397 (402)
..+.-.++..+|
T Consensus 177 ~~~~~~~~~~~~ 188 (188)
T PRK14968 177 PFEELIVLELVK 188 (188)
T ss_pred CCceEEEEEEeC
Confidence 333444444443
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-09 Score=89.76 Aligned_cols=101 Identities=27% Similarity=0.379 Sum_probs=70.5
Q ss_pred CCeEEEECCccchhHHHHcc---CCceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCC--CCCCCeeEEEecCc
Q 015704 11 LRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP--YPSQAFDLIHCSRC 83 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~---~~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp--~~~~sfDlI~s~~~ 83 (402)
+.+|||+|||+|.++..+++ ..++++|+++.....+..... ..+. ...+...|....+ +++++||+|+++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP-RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH-HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH-HccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 45899999999988877664 478999999876654443322 2332 3456667765554 67899999999877
Q ss_pred ccccccC-------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRD-------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d-------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.....+ ...+++++.++|||||.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6543211 2578999999999999999875
|
... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=93.82 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=67.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++. .|+++|+++.++.... +.++++ .+......|... .+++ ++||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 35679999999999999888765 5999999998776544 444433 223444555443 1223 56999996
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
... . ......+++++.++|||||.++++
T Consensus 148 d~~-~--p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA-Q--PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC-C--hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 422 1 111245689999999999999996
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.6e-09 Score=97.73 Aligned_cols=119 Identities=15% Similarity=0.086 Sum_probs=77.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhh-HHhcCccc--------------ccccCCCCCCCC---C-
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPV-IYDRGLIG--------------VMHDWCEPFDTY---P- 316 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~-~~~rg~~~--------------~~~~~~~~~~~~---~- 316 (402)
+|||+|||.|..+.+||++|+ +|+++| ++..++. +.++|+.. .+.-++.++..+ +
T Consensus 40 rvL~~gCG~G~da~~LA~~G~-----~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH-----EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC-----eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 699999999999999999998 566665 4444443 23445411 111112222222 3
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEE-Ee---Ch--------hhHHHHHHHHHhcCceEEEeec
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI-RD---SI--------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~-~~---~~--------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
.+||.|+-+.+|.|++ ......++..|.++|||||++++ +- +. ...+.+.+.+. -+|++.....
T Consensus 115 ~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~~~~ 190 (218)
T PRK13255 115 ADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIELLER 190 (218)
T ss_pred CCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEEeee
Confidence 5899999999999997 34567999999999999996443 31 11 12445555553 3388776543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.2e-10 Score=99.39 Aligned_cols=87 Identities=23% Similarity=0.335 Sum_probs=62.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccc-cCCCCCCCCC-CcccEEEEccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMH-DWCEPFDTYP-RTYDLLHAAGLFSVESK 333 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~-~~~~~~~~~~-~sfD~v~~~~~~~~~~~ 333 (402)
+|||+|||+|.++..|++.+. + +++++| ++.++..+..+++- .++ +..+.+++++ ++||+|+|+.+|+|+.+
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~-~---~~~giD~s~~~i~~a~~~~~~-~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQ-V---RGYGIEIDQDGVLACVARGVN-VIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccC-C---cEEEEeCCHHHHHHHHHcCCe-EEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 599999999999999986531 1 345555 46677777777652 222 2222244566 79999999999999875
Q ss_pred cCCHHHHHHHhhhhccCC
Q 015704 334 RCNMSTIMLEMDRMLRPG 351 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpg 351 (402)
+..+|.||.|+++++
T Consensus 91 ---~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 91 ---PEEILDEMLRVGRHA 105 (194)
T ss_pred ---HHHHHHHHHHhCCeE
Confidence 689999998887753
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-08 Score=88.65 Aligned_cols=149 Identities=15% Similarity=0.254 Sum_probs=90.0
Q ss_pred hhhHHhhHHHHHHHHHHHHhcc-cCC-------------CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCCh
Q 015704 228 ELFKAESKYWNEIIESYVRALH-WKK-------------MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTL 293 (402)
Q Consensus 228 ~~~~~~~~~w~~~~~~y~~~~~-~~~-------------~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~ 293 (402)
+.|+++-+.|..+-+.|.+... |+. ..--.|-|+|||.+.+|..+... ..|.-.++++.... +
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~~V~SfDLva~n~~--V 108 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-HKVHSFDLVAPNPR--V 108 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S----EEEEESS-SSTT--E
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-ceEEEeeccCCCCC--E
Confidence 6788899999999999987643 221 12235999999999999887533 34566666665421 0
Q ss_pred hhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhh---HHHHHHH
Q 015704 294 PVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV---MDELQEI 369 (402)
Q Consensus 294 ~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~---~~~~~~~ 369 (402)
- ..++ .. .|.+ .|.|++++...|+- .+..+.|.|..|||||||.++|.|-... .+..-+.
T Consensus 109 t-------acdi----a~-vPL~~~svDv~VfcLSLMG----Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~ 172 (219)
T PF05148_consen 109 T-------ACDI----AN-VPLEDESVDVAVFCLSLMG----TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKA 172 (219)
T ss_dssp E-------ES-T----TS--S--TT-EEEEEEES---S----S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHH
T ss_pred E-------EecC----cc-CcCCCCceeEEEEEhhhhC----CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHH
Confidence 0 0111 11 2345 79999999855544 3568999999999999999999985533 4455567
Q ss_pred HHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 370 GKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 370 ~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
++++..+....|..+. -..++..+|.
T Consensus 173 ~~~~GF~~~~~d~~n~---~F~~f~F~K~ 198 (219)
T PF05148_consen 173 LKKLGFKLKSKDESNK---HFVLFEFKKI 198 (219)
T ss_dssp HHCTTEEEEEEE--ST---TEEEEEEEE-
T ss_pred HHHCCCeEEecccCCC---eEEEEEEEEc
Confidence 8899999999876532 4555555553
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=96.87 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=77.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC---CcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP---RTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~---~sfD~v~~~~~~~~~ 331 (402)
.+|||+|||+|..+..+++.|+. .|+++| ++.+++.+.++.-...+. .. ..++ .+||+|+|....+
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~----~v~giDis~~~l~~A~~n~~~~~~~---~~-~~~~~~~~~fD~Vvani~~~-- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK----KVLAVDIDPQAVEAARENAELNGVE---LN-VYLPQGDLKADVIVANILAN-- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC----eEEEEECCHHHHHHHHHHHHHcCCC---ce-EEEccCCCCcCEEEEcCcHH--
Confidence 45999999999999998888752 356666 456666655542111110 00 1122 2799999973221
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecC
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
.+..++.++.|+|||||++++++-. +....+...+++..+++....++
T Consensus 191 ----~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 191 ----PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred ----HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe
Confidence 2457899999999999999999743 34667777888888988766553
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.7e-09 Score=94.74 Aligned_cols=102 Identities=22% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC--CCCCCeeEEEecC
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP--YPSQAFDLIHCSR 82 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp--~~~~sfDlI~s~~ 82 (402)
..+|||+|||+|.++..++++ .++++|+.+.+...+....+. +.+. ..+...|+..+. ....+||+|+||.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 679999999999999999876 688888888776665544433 2222 235566765553 3345799999987
Q ss_pred ccccccc-----------------ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTR-----------------DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~-----------------d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.++.-.. +.+.+++...++|||||.+.+..+
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 6554322 235778889999999999999964
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=93.73 Aligned_cols=142 Identities=17% Similarity=0.133 Sum_probs=79.0
Q ss_pred HhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCcccccc-cCCCC--CCCCCC
Q 015704 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGLIGVMH-DWCEP--FDTYPR 317 (402)
Q Consensus 246 ~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~~~~~~-~~~~~--~~~~~~ 317 (402)
+.+.+..+. .|||+|||+|.++..|++... ...|.++| ++.|++ .+.++.-+..+. +..++ ...++.
T Consensus 66 ~~l~i~~g~--~VlD~G~G~G~~~~~la~~v~---~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~ 140 (226)
T PRK04266 66 KNFPIKKGS--KVLYLGAASGTTVSHVSDIVE---EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVE 140 (226)
T ss_pred hhCCCCCCC--EEEEEccCCCHHHHHHHHhcC---CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccc
Confidence 345555553 599999999999999998721 11455555 344544 333332222222 22211 112356
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE------eCh----hhHHHHHHHHHhcCceEEEeecCCCCC
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR------DSI----DVMDELQEIGKAMGWHVTLRETAEGPH 387 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~------~~~----~~~~~~~~~~~~~~w~~~~~~~~~~~~ 387 (402)
+||+|++.. .+......+|.|+.|+|||||+++|+ |.. .......+.+++-..+.....+-..-.
T Consensus 141 ~~D~i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~ 215 (226)
T PRK04266 141 KVDVIYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYH 215 (226)
T ss_pred cCCEEEECC-----CChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCc
Confidence 899998651 11111235689999999999999993 321 112223355555566665544422112
Q ss_pred CceEEEEEEe
Q 015704 388 ASYRILTADK 397 (402)
Q Consensus 388 ~~~~~l~~~k 397 (402)
..+..++++|
T Consensus 216 ~~h~~~v~~~ 225 (226)
T PRK04266 216 KDHAAVVARK 225 (226)
T ss_pred CCeEEEEEEc
Confidence 2455666665
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.5e-09 Score=100.51 Aligned_cols=104 Identities=22% Similarity=0.168 Sum_probs=76.5
Q ss_pred CCCCeEEEECCccchhHHHHcc--CCceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP--RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~--~~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|.++...+. ..++++|+++.++..+.. .++..+... .+...|+.++|+++++||+|+++..+.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~-nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARI-NLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHH-HHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 3567999999999988765543 378999999988766553 334444443 466778888888888999999875421
Q ss_pred cc-------ccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NW-------TRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~-------~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.. ..+ ...+++++.++|+|||++++..+
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 11 101 36889999999999999999864
|
This family is found exclusively in the Archaea. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-09 Score=100.20 Aligned_cols=96 Identities=17% Similarity=0.303 Sum_probs=69.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
..|||+|||.|.++..+++.++ +++.+| ++.++..+.++ +. +...+...+.++..+ .+||+|++++++
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLGA-----DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-----eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 3599999999999999998876 466665 45555555443 32 222222222333233 799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|..+ +..+|.++.|+|+|||+++++..
T Consensus 125 ~~~~~---~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPD---PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hccCC---HHHHHHHHHHHcCCCcEEEEEec
Confidence 99874 57899999999999999999864
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.7e-09 Score=95.30 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=67.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++. .++++|+++.+...+.. ..+..+.. ..+...|......+.++||+|++..
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~-~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK-TLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 36689999999999988766542 78999999877766553 33334443 4466667655555567899999865
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+ ....+.+.|||||.+++..
T Consensus 154 ~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred Cccc-------chHHHHHhhCCCcEEEEEE
Confidence 4322 2346677899999998873
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-09 Score=94.65 Aligned_cols=99 Identities=18% Similarity=0.298 Sum_probs=73.9
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.+.-|||||||+|..+..|.+. ..+++|+|+.|++.++. +.+.. ...+.--+.+||++++||-+++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 4568999999999888888776 68899999998876653 21221 222222388999999999999754 467
Q ss_pred cccC-------h----HHHHHHHHHhcCCCeEEEEEeCC
Q 015704 87 WTRD-------D----GILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 87 ~~~d-------~----~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
|.-+ | ..++..++.+|++|+..++...|
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 7432 2 35788899999999999999543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-08 Score=104.98 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=75.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCC-CCCCCCCCcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWC-EPFDTYPRTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~-~~~~~~~~sfD~v~~~ 325 (402)
++|||+|||+|+|+.+++..|+. .|+.+| ++.+++.+.+. |+ +..++.-+ +.+..++++||+|++.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~----~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK----STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 46999999999999999998762 466666 45556544432 33 12222111 1111124689999985
Q ss_pred c-ccccc-------cccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEee
Q 015704 326 G-LFSVE-------SKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 326 ~-~~~~~-------~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
- .|... ....+...++....|+|+|||.++++............+..-.+++....
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 1 11100 00113467888889999999999987655444444666666677777654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=89.02 Aligned_cols=102 Identities=20% Similarity=0.197 Sum_probs=70.5
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++.. .++++|+++.++..+... ....+.. ..+...|... ++.+++||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCN-AKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHH-HHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 35678999999999998888765 889999998777655433 3333332 3344445333 344558999998765
Q ss_pred cccccc--------------------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTR--------------------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~--------------------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.+..+ ....+++++.++|||||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 433110 12467999999999999998875
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=95.24 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
..+.+|||+|||+|.++..++.. .++++|+++.++..+. ..+...+.. ..+...|... ++++++||+|+|+..
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR-KNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPP 163 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCC
Confidence 34569999999999998888764 7899999988776555 333444444 3455556543 456789999999765
Q ss_pred ccccc------cC-------------------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWT------RD-------------------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~------~d-------------------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.... .+ ...+++++.++|+|||.+++..
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 33211 00 1357889999999999999985
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-09 Score=93.17 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=98.8
Q ss_pred cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-----ccccccCCCCCCCCC-CcccEE
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-----IGVMHDWCEPFDTYP-RTYDLL 322 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-----~~~~~~~~~~~~~~~-~sfD~v 322 (402)
++.-+.+.|.|+|||+|.-++.|+.+= ....|+++| +..|+..|..|.. .+++++|+ | +.+|++
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~Rw---P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~------p~~~~dll 96 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRW---PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK------PEQPTDLL 96 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhC---CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC------CCCccchh
Confidence 556678889999999999999999982 234788899 5899999998877 58888887 4 788999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----hhHHHHHHHHHhcCceEEEee
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----~~~~~~~~~~~~~~w~~~~~~ 381 (402)
++.-||+-+++ ...+|.-.---|.|||++.+.-+. .....|++.+++.-|......
T Consensus 97 faNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~ 156 (257)
T COG4106 97 FANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGG 156 (257)
T ss_pred hhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCc
Confidence 99999999885 478999999999999999998432 346788999998888765543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=98.58 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=70.4
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHc-CCCcEEEeccccC-CCCCCC----CeeE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRR-LPYPSQ----AFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~-~~~~~~~~~d~~~-lp~~~~----sfDl 77 (402)
+++.+|||+|||+|..+..|++. .++++|+|+.++..++.+..... +.......+|+.+ ++++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 35678999999999988877644 68999999998877765544322 2333445667554 344332 2334
Q ss_pred EEecCccccccc-ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTR-DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~-d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++..++.++.+ +...+|++++++|+|||.|++..
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 444444444442 24679999999999999999985
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-09 Score=94.02 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=68.2
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++. .|+++|+++..+..+. +...+.+.. ..+...|........++||+|++..
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 35679999999999999887754 3899999987776555 344444543 3455556554433456899999765
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. ......+.+.|+|||++++..
T Consensus 155 ~~-------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 155 AG-------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred Cc-------ccccHHHHHhcCcCcEEEEEE
Confidence 42 233456789999999999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-09 Score=98.01 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=68.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCC-CCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTY-PRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~-~~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..+++.++ .++.+| ++.++..+.++ ++ +.......+.++.. +.+||+|++.++
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~-----~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGA-----NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 4699999999999999998876 355555 34555554442 22 22222222222222 379999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|.. ++..+|.++.++|+|||.+++++.
T Consensus 122 l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 122 LEHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 99976 468999999999999999999864
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-09 Score=96.62 Aligned_cols=97 Identities=25% Similarity=0.358 Sum_probs=69.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc----ccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----IGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~----~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
.+|||+|||.|.++..+++.+.+ ..+++.+| ++.++..+.++.- +..++......+ ++ .+||+|+++.+++
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~--~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPD--RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCC--CceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeeeC
Confidence 46999999999999999887531 12455555 3455655555431 233332223323 45 7999999999988
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|.. ++..+|+++.++|||||++++.+
T Consensus 118 ~~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NVT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Ccc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 866 46899999999999999999875
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-09 Score=94.20 Aligned_cols=92 Identities=25% Similarity=0.265 Sum_probs=64.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-C-CCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-L-PYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~-l-p~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.+++++. .+...++.. + ++++++||+|+|+.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-----~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-----LACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-----HHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 45679999999999999888654 567888876544 34444443 234445443 4 467789999999877
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
++| ..++..+++++.|.++ ..+++
T Consensus 85 l~~-~~d~~~~l~e~~r~~~---~~ii~ 108 (194)
T TIGR02081 85 LQA-TRNPEEILDEMLRVGR---HAIVS 108 (194)
T ss_pred hHc-CcCHHHHHHHHHHhCC---eEEEE
Confidence 554 5588999999988765 34555
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=79.86 Aligned_cols=98 Identities=23% Similarity=0.310 Sum_probs=68.3
Q ss_pred eEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcC-CCcEEEeccccCCCC-CCCCeeEEEecCccccc
Q 015704 13 VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRRLPY-PSQAFDLIHCSRCRINW 87 (402)
Q Consensus 13 ~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~-~~~~~~~~d~~~lp~-~~~sfDlI~s~~~~~~~ 87 (402)
+|+|+|||+|.++..+... .++++|+++.....+.. ...... ....+...+..+... ..++||+|+++.++.++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 5899999999998888762 78888988765543331 111111 123344555544442 45789999998774443
Q ss_pred ccChHHHHHHHHHhcCCCeEEEEE
Q 015704 88 TRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 88 ~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.......++.+.+.|+|||.++++
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 556789999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.9e-09 Score=99.06 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=71.6
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+..+|||+|||+|.++..++++ +++++|+ +..+..+. +.+.+.+.. ..+...|....+++ .+|+|+++.+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh
Confidence 4579999999999998888765 5778886 44443333 344444543 23556676555554 3699988887
Q ss_pred ccccccCh-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|.++. ..+++++++.|+|||.+++...
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 77776443 6799999999999999999854
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-09 Score=97.78 Aligned_cols=111 Identities=21% Similarity=0.242 Sum_probs=79.0
Q ss_pred cccccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHc------CCCcEEEecc------ccC
Q 015704 3 QINTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER------GAPAMVAAFA------TRR 67 (402)
Q Consensus 3 li~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~------~~~~~~~~~d------~~~ 67 (402)
||..+.+++..++|+|||-|.-+..+... .++++||+...+.+++.+.-.-. -.+..+..+| .+.
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 57778888999999999998665555443 78999999888877765433211 1234455554 233
Q ss_pred CCCCCCCeeEEEecCcccccccC---hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 68 LPYPSQAFDLIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 68 lp~~~~sfDlI~s~~~~~~~~~d---~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++++.+||+|-|.+++|+--.+ ...+|+++.+.|+|||+||-+.|
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 55666679999998775443333 35789999999999999999853
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-09 Score=102.03 Aligned_cols=101 Identities=14% Similarity=0.248 Sum_probs=68.9
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHH----hcCc---ccccccCCCCCCCCCCcccEEEEc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIY----DRGL---IGVMHDWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~----~rg~---~~~~~~~~~~~~~~~~sfD~v~~~ 325 (402)
...+.|||+|||+|.++..++++..++ +++..|.+.+++.+. +.|+ +..+..-... .++| .+|+|+++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~---~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~-~~~~-~~D~v~~~ 222 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYK-ESYP-EADAVLFC 222 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCC---EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccC-CCCC-CCCEEEeE
Confidence 445679999999999999999885322 444445445555443 3354 2223221111 1244 47999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++++++.+ .....+|+++.|.|||||.+++-|.
T Consensus 223 ~~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 223 RILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99888764 2346899999999999999999863
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=95.49 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=85.8
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC-C-cccEEEEcc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-R-TYDLLHAAG 326 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~-~-sfD~v~~~~ 326 (402)
.-++|||+|||+|.++-+.++.|+. .|.++| .+..++.+++. |+-...+...-..+..+ + .||+|+|.-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~----~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK----KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc----eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 4567999999999999999999884 344444 24445444443 33211222222224455 4 999999983
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
| .+ -+..+..++.|.|||||++|+|-=. +..+.+...+.+-.|.+..+... .|++.+.-|
T Consensus 238 -L---A~--vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~-----~eW~~i~~k 298 (300)
T COG2264 238 -L---AE--VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER-----EEWVAIVGK 298 (300)
T ss_pred -h---HH--HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec-----CCEEEEEEE
Confidence 2 21 1347788899999999999999632 33667777888889998888775 355555443
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=83.46 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=61.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCC-CCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTY-PRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~-~~sfD~v~~~~~~ 328 (402)
.|||+|||+|.++..++++... ..|+++| ++.+++.+.. .++ +..+....+...++ +.+||.|++....
T Consensus 22 ~vldlG~G~G~~~~~l~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 22 VLWDIGAGSGSITIEAARLVPN---GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred EEEEeCCCCCHHHHHHHHHCCC---ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 6999999999999999987321 3566666 4555554432 233 22222211111222 3799999998644
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.+ ...++.++.|+|||||++++.
T Consensus 99 ~~------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 GL------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hh------HHHHHHHHHHHcCCCCEEEEE
Confidence 33 358999999999999999986
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.8e-08 Score=93.16 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.++..+.. ..+...|... ++++++||+|+|+..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~-~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE-INIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 4568999999999998888754 6999999998876665 444445543 3455556422 234568999999754
Q ss_pred ccccc----------cC--------------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWT----------RD--------------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~----------~d--------------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..... .+ ...+++++.++|+|||.+++..
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 32110 01 1456888999999999999985
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.2e-09 Score=92.60 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=73.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCC--CCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFD--TYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~--~~~-~sfD~v~~~ 325 (402)
+.|||+|||.|.++..|+.+..+ .+++++| +..++..+.. .|+ +..++.....++ .+| .+||.|+++
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~---~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD---KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC---CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 46999999999999999988532 3566666 4556554433 343 333333222222 255 599999987
Q ss_pred cccc-----cccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHH-HHhcCceEE
Q 015704 326 GLFS-----VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEI-GKAMGWHVT 378 (402)
Q Consensus 326 ~~~~-----~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~-~~~~~w~~~ 378 (402)
.-.. |...+.....+|.++.|+|||||.+++.... .....+.+. ...-+|+..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 3221 2122223368999999999999999987544 334444444 333346654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.1e-09 Score=95.14 Aligned_cols=97 Identities=26% Similarity=0.359 Sum_probs=68.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
..|||+|||.|.++..++..+. ....++.+| ++.+++.+.++- + +..++...+.++ ++ .+||+|+++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVG--KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEec
Confidence 4699999999999999988751 123566666 455655554441 1 233332223322 44 7999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++.|.. ++..+|.++.++|+|||.+++.+
T Consensus 130 ~l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 988866 46899999999999999999865
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=90.07 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCC-C-cEEEeccccC-CCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRR-LPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~-~-~~~~~~d~~~-lp~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|.++..++. .+++++|+++.++..++ +.++..+. . ..+...|..+ ++...++||.|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~-~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR-RNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 567999999999998876543 26899999998776555 33444442 2 3344455443 33334689999975
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. ..++..+++++.++|+|||.+++..
T Consensus 119 ~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 119 GG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 2356889999999999999999864
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=98.55 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=73.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh----hhHHhcCc--ccccccCCCC-CCCCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL----PVIYDRGL--IGVMHDWCEP-FDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~----~~~~~rg~--~~~~~~~~~~-~~~~~-~sfD~v~~~~~ 327 (402)
.+||+|||.|.|+..+|.+..+ .+++++| ...++ ..+..+|+ +..++.-... +..+| ++||.|+++--
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~---~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPN---KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCC---CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 5999999999999999998532 3566666 33444 33444455 3333322222 23467 89999998732
Q ss_pred ccccccc---CCHHHHHHHhhhhccCCcEEEEE-eChhhHHH-HHHHHHhcCceEEE
Q 015704 328 FSVESKR---CNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDE-LQEIGKAMGWHVTL 379 (402)
Q Consensus 328 ~~~~~~~---~~~~~~l~e~~RvLrpgG~~~~~-~~~~~~~~-~~~~~~~~~w~~~~ 379 (402)
..+-..+ -.-...|.|+.|+|||||.+.++ |....... ++.+...-+++...
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~ 258 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI 258 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec
Confidence 2211111 01258999999999999999996 44333333 44444444555533
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-09 Score=95.67 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=67.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCCCcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..|++.+. .|+.+| ++++++.+.++ ++-..++-...+++..+.+||+|+|.++++|
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4699999999999999999875 466766 56777766654 2201111111222322379999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+++. +...++.++.|++++|+.+.+..
T Consensus 140 ~~~~-~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YPQE-DAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CCHH-HHHHHHHHHHhhcCCeEEEEECC
Confidence 7743 56789999999887666655443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-08 Score=92.89 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=63.4
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhcC-C--CceEEEeccCCCCCChhhHHhc-CcccccccCCCCC--CCCCCcccEE
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQK-F--DCWVMNVVPVSGFNTLPVIYDR-GLIGVMHDWCEPF--DTYPRTYDLL 322 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~~-~--~~~~~~v~~~~~~~~~~~~~~r-g~~~~~~~~~~~~--~~~~~sfD~v 322 (402)
.+..+ .+|||+|||+|+++.++++.. . .|+.+++.+....+++..+..| .++..+.+...+. .....+||+|
T Consensus 129 ~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 129 PIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred ccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEE
Confidence 34444 359999999999999999872 1 1333333321112456666554 4444443432221 1112689999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++... .++ ....++.|+.|+|||||+|+|.
T Consensus 207 ~~Dva---~pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVA---QPD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCC---Ccc--hHHHHHHHHHHhccCCCEEEEE
Confidence 99853 121 3356778999999999999995
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-08 Score=87.99 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=63.7
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sf 75 (402)
.++.+|||+|||+|.++..++.. .++++|+++.. ... ...+...|..+.+ ++.++|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~--~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIE--NVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCC--CceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 35679999999999988777543 48999999743 111 2234444544332 456789
Q ss_pred eEEEecCccc---ccccC-------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 76 DLIHCSRCRI---NWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 76 DlI~s~~~~~---~~~~d-------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|+++.+.. +|..+ ...++.++.++|+|||.+++..+
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 9999854311 12111 25789999999999999999753
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.2e-09 Score=92.98 Aligned_cols=145 Identities=14% Similarity=0.198 Sum_probs=96.1
Q ss_pred CCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcC------CCcEEEecccc--CCCCCCCCee
Q 015704 11 LRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERG------APAMVAAFATR--RLPYPSQAFD 76 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~------~~~~~~~~d~~--~lp~~~~sfD 76 (402)
..+||++|||.|.....+++. .+.+.|.++..+ +..+++. ....+...+.+ .-|...+++|
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhccccchhhhcccceeccchhccCCCCcCccc
Confidence 348999999999877766653 577888887554 3222221 11112222222 2356678999
Q ss_pred EEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCC
Q 015704 77 LIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTN 155 (402)
Q Consensus 77 lI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (402)
.|++.+++....++ ...++.+++++|||||.+++.....++-.. ++ +. ..+-+....+.++..+++|-++..
T Consensus 147 ~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq-lR--F~----~~~~i~~nfYVRgDGT~~YfF~~e 219 (264)
T KOG2361|consen 147 IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ-LR--FK----KGQCISENFYVRGDGTRAYFFTEE 219 (264)
T ss_pred eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH-Hh--cc----CCceeecceEEccCCceeeeccHH
Confidence 99998877776655 478999999999999999999643222211 11 11 122234445667788899999988
Q ss_pred hhhhhhhhcCCC
Q 015704 156 NSCYLNREAGTI 167 (402)
Q Consensus 156 ~~~~~l~~aGf~ 167 (402)
....++.+|||.
T Consensus 220 eL~~~f~~agf~ 231 (264)
T KOG2361|consen 220 ELDELFTKAGFE 231 (264)
T ss_pred HHHHHHHhcccc
Confidence 877788899994
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5e-08 Score=92.39 Aligned_cols=134 Identities=11% Similarity=0.088 Sum_probs=82.1
Q ss_pred CcceEEeccccchHHHHHHhh--cCCCceEEEeccCC-CCCChhhHHh-----cCc---ccccc-cCCCCCCCCCCcccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVS-GFNTLPVIYD-----RGL---IGVMH-DWCEPFDTYPRTYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~--~~~~~~~~~v~~~~-~~~~~~~~~~-----rg~---~~~~~-~~~~~~~~~~~sfD~ 321 (402)
.-++|+|+|||.|++++.+.. ...+ ..++.+| ++.+.+.|.. .|+ +.+.. +..+ ..+....||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~---~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPT---TSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCE
Confidence 557799999999988776544 2222 2344444 2333332222 344 22222 2222 1111268999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHh-------cCceEEEeecCCCCCCceEEEE
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKA-------MGWHVTLRETAEGPHASYRILT 394 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~~~~~~~~~~~l~ 394 (402)
|+|. ++.+.. +.+...+|..+.|.|||||+++++-.. .++.++.. -.|++...-+..++ .-..+.|
T Consensus 199 VF~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~----G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~ 271 (296)
T PLN03075 199 VFLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAH----GARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVII 271 (296)
T ss_pred EEEe-cccccc-cccHHHHHHHHHHhcCCCcEEEEeccc----chHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEE
Confidence 9999 887775 346799999999999999999999521 11111111 08998887775432 4466788
Q ss_pred EEec
Q 015704 395 ADKR 398 (402)
Q Consensus 395 ~~k~ 398 (402)
++|.
T Consensus 272 ~r~~ 275 (296)
T PLN03075 272 ARKP 275 (296)
T ss_pred EEee
Confidence 8885
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.1e-08 Score=96.95 Aligned_cols=102 Identities=19% Similarity=0.135 Sum_probs=70.6
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC-CCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY-PSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~-~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..++ +.++..+....+...|.....+ ..++||+|+||...
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar-eNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR-KNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3469999999999998877642 7899999998887665 3444445445566666543322 24579999998754
Q ss_pred ccccc--------------------C----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTR--------------------D----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~--------------------d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..-.. + ...+++++.+.|+|||.+++..
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 32110 1 1256677788999999999875
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-08 Score=88.70 Aligned_cols=97 Identities=20% Similarity=0.107 Sum_probs=66.3
Q ss_pred CCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC-CCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-LPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~-lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++. ..++++|+++.++..++ +.+.+.+.. ..+...|+.. ++.....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR-RNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 567999999999999887753 27999999998776655 333344443 3344455432 222223457665321
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+...+++++.++|+|||.+++.+
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 2345789999999999999999996
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-08 Score=91.89 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=66.8
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
...+|||+|||+|.++..++.+ .++++|+++.++ +.++++.....+...|+..+. .+.+||+|+++..++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-----~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-----RIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 4569999999999888777542 688999987655 334333223456666766554 346899999998877
Q ss_pred ccccC-------------------hHHHHHHHHHhcCCCeEEEEE
Q 015704 86 NWTRD-------------------DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 86 ~~~~d-------------------~~~~l~e~~r~LkpgG~li~~ 111 (402)
+.... ...++.....+|+|+|.+.+.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 64321 134567778888999977666
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.4e-08 Score=90.87 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=67.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC---CCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR---LPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~---lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++. .|+++|+++.+.. .++..+..+ .+......|+.. .+...++||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 46679999999999999888865 5999999965442 333444433 223444455432 2223458999998
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
... .+++...++.++.+.|||||.|++.
T Consensus 209 Dva---~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 209 DVA---QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred eCC---CcchHHHHHHHHHHhccCCCEEEEE
Confidence 643 1323456677899999999999996
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.3e-09 Score=92.68 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=75.7
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccC-------CCCCCCCCCcccEEEEc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDW-------CEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~-------~~~~~~~~~sfD~v~~~ 325 (402)
..|.++|+|||+|--+..++.... +|+++| ++.||+++...--+...|.- .++|..=++|.|+|.|.
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k-----~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK-----EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh-----hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 345799999999955555666655 888888 78899988776544333321 12222225899999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCc-EEEE---EeChhhHHHHHHHHHhcCce
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGG-HVYI---RDSIDVMDELQEIGKAMGWH 376 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG-~~~~---~~~~~~~~~~~~~~~~~~w~ 376 (402)
+.++ +++.+....++.|||||.| .+.+ +|.....-+.-.+..+++|+
T Consensus 108 qa~H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAVH----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhHH----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 7775 4678999999999999999 2222 33322333444444455553
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-08 Score=89.27 Aligned_cols=96 Identities=16% Similarity=0.055 Sum_probs=65.1
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|.++..++.. .++++|+++.++..+. +...+.+.. ..+...|......+.++||+|++.....
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAK-RRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP 155 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHH-HHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence 35679999999999988766654 6899999977665554 333333443 3345555433222347899999865422
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....++.+.|+|||.+++..
T Consensus 156 -------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 156 -------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred -------hhhHHHHHhcCCCcEEEEEE
Confidence 22456789999999999985
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-08 Score=94.42 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=78.4
Q ss_pred ceEEeccccchHHHHHHhhcCCC-ceEEEeccCCCCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~ 333 (402)
.+|||+|||+|..+-+-++.|+. |..+++.|..-..+.+-+...|+-..+.- . .....+ ..||+|.|.-+..-
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~~~~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDLVEGKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCTCCS-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-EecccccccCCEEEECCCHHH---
Confidence 36999999999999888888873 34444444332333334444455222210 0 112344 79999999833222
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEeC-hhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
+..++..+.+.|||||++|+|-= .+..+.+.+.+++ .|++.....++ .=..|.++|+
T Consensus 238 ---L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~----~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ---LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEG----EWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEET----TEEEEEEEE-
T ss_pred ---HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEEC----CEEEEEEEeC
Confidence 24677788999999999999952 2335666777777 88887776652 2334555553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-08 Score=88.77 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=78.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHH------------HHHcCCCcEEEeccccCCCCC---C
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQF------------ALERGAPAMVAAFATRRLPYP---S 72 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~------------a~~~~~~~~~~~~d~~~lp~~---~ 72 (402)
++.+||+.|||.|.-+..|+++ .|+|+|+|+..+.....+. ...++....+.++|..+++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 4579999999999999999987 8999999987765543211 011233456777887777632 2
Q ss_pred CCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 73 QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.||+|+-..++++++++. .+..+.+.++|+|||.+++.++
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 6899999777777877664 6899999999999999888754
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-08 Score=92.63 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=89.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|+....+ ..|+++| ++.+++.+.+. |+ +..++ ++. .+++ ..||+|+|.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~---~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~---~~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN---AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF---EPLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh---ccCcCCCccEEEEC
Confidence 36999999999999999987421 2566666 45666655543 33 22332 333 2345 489999995
Q ss_pred -------------cccccccccC---------CHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHH-hcCce-EEEee
Q 015704 326 -------------GLFSVESKRC---------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGK-AMGWH-VTLRE 381 (402)
Q Consensus 326 -------------~~~~~~~~~~---------~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~-~~~w~-~~~~~ 381 (402)
.++.|.+..+ .+..++.+..+.|+|||++++.-.......+++++. ...|. +....
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~ 269 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGR 269 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEec
Confidence 2333432111 245788999999999999999887777778888766 45664 44544
Q ss_pred cCCCCCCceEEEEEEec
Q 015704 382 TAEGPHASYRILTADKR 398 (402)
Q Consensus 382 ~~~~~~~~~~~l~~~k~ 398 (402)
+.. +.+++++++++
T Consensus 270 D~~---g~~R~~~~~~~ 283 (284)
T TIGR00536 270 DLN---GKERVVLGFYH 283 (284)
T ss_pred CCC---CCceEEEEEec
Confidence 432 47888888764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.9e-08 Score=91.78 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=69.3
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.+|||+|||+|.++..++.. .++++|+++..+..+. +.++..+.. ..+...|... +++.++||+|+|+....
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~-~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE-ENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 68999999999988888753 7999999988776655 344444443 3455556433 34445899999974332
Q ss_pred ccc------------c------------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWT------------R------------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~------------~------------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.-. + ....++.++.+.|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 110 0 12467888999999999999985
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-08 Score=88.74 Aligned_cols=114 Identities=14% Similarity=0.235 Sum_probs=73.3
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCC-CCCCcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFD-TYPRTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~-~~~~sfD~v~~~~ 326 (402)
.|||+|||+|.++..++.. +. ...|+.+| ++.+++.+.++ |+ +..+......+. ..+.+||.|++..
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 5999999999999988754 21 12566666 45566554332 42 222222122212 2236899999853
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCceEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w~~~~ 379 (402)
. ..++..+|.++.|+|||||++++.. ..+...++...++...++..+
T Consensus 120 ---~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 120 ---G---SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEI 167 (198)
T ss_pred ---C---cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEE
Confidence 1 2356899999999999999999843 334556666677776766544
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.9e-08 Score=97.42 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=74.1
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|..+..+++. .++++|+++.++..++ +.+...+....+...|...++ ++.++||.|++..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 35679999999999988877653 6899999998876655 444555555556666766543 3457899999643
Q ss_pred ccc-----------ccccC----------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRI-----------NWTRD----------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~-----------~~~~d----------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
... .|... ...++.++.++|||||.++++|-
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 211 12111 13689999999999999999973
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5e-08 Score=93.93 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=69.9
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.+|||+|||+|.++..++.. .++++|+++.++..+. +.++..+.. ..+...|... ++++++||+|+|+....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~-~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE-INIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 68999999999998888754 7999999998886665 444444543 3455556432 23456899999975432
Q ss_pred cc------------cc--------C----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NW------------TR--------D----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~------------~~--------d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. .+ + ...+++++.+.|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11 00 0 1467899999999999999985
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=97.54 Aligned_cols=104 Identities=20% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHc----------CCCcEEEeccccC------CCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER----------GAPAMVAAFATRR------LPY 70 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~----------~~~~~~~~~d~~~------lp~ 70 (402)
++.+|||+|||-|.-...+... .++|+|++...+.++..+...-. .....+...|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999987655544433 78999999988887776552111 1223344444221 222
Q ss_pred CCCCeeEEEecCcccccccCh---HHHHHHHHHhcCCCeEEEEEeC
Q 015704 71 PSQAFDLIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 71 ~~~sfDlI~s~~~~~~~~~d~---~~~l~e~~r~LkpgG~li~~~~ 113 (402)
....||+|-|..++|+...+. ..+|+.+.+.|+|||+|+.+++
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 235999999988866665554 4689999999999999999974
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=89.93 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..++.. .++++|+++..+..+.............+...|... ++++++||+|+|+....
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 5578999999999988877653 689999998777555433221111223455555422 23357899999975433
Q ss_pred ccc------c-------------------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWT------R-------------------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~------~-------------------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
... . ....+++++.++|+|||++++..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 210 0 01457788889999999999974
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-08 Score=84.94 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=60.3
Q ss_pred eEEeCCccchHHHHHHHHHHc---CCCcEEEeccccCCCCCCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEE
Q 015704 34 ITMSIAPKDVHENQIQFALER---GAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 34 ~~vdi~~~~~~~a~~~~a~~~---~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~ 110 (402)
+|+|+++.|+..+..+..... .....+..+|++++|+++++||+|+++.++ |+..|+..++++++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l-~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGL-RNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchh-hcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 378999888866543222111 112457778899999999999999988764 4445899999999999999999998
Q ss_pred EeCC
Q 015704 111 AAQP 114 (402)
Q Consensus 111 ~~~~ 114 (402)
..+.
T Consensus 80 ~d~~ 83 (160)
T PLN02232 80 LDFN 83 (160)
T ss_pred EECC
Confidence 8643
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-07 Score=88.89 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=75.0
Q ss_pred eEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEecCccccc
Q 015704 13 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 13 ~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
+|||+|||||.++..++.. .|+++|+++..+.-+. +.+...+.... +...| -++--.++||+|+||...+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~d--lf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSD--LFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeee--cccccCCceeEEEeCCCCCCC
Confidence 7999999999999888765 7999999998776665 55556665332 22222 122122489999998766554
Q ss_pred c----------cCh--------------HHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHH
Q 015704 88 T----------RDD--------------GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWK 127 (402)
Q Consensus 88 ~----------~d~--------------~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~ 127 (402)
. .+| ..++.++.+.|+|||.+++.. ..+....+.+.+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~--g~~q~~~v~~~~~ 251 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI--GLTQGEAVKALFE 251 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE--CCCcHHHHHHHHH
Confidence 3 011 256788999999999999985 4455454444443
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=89.69 Aligned_cols=134 Identities=23% Similarity=0.345 Sum_probs=83.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc---Cc---ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR---GL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r---g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..++.... ...++.+| ++.+++.+.+. +. +..++.- .+.+++ .+||+|+|.--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~---~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d--~~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP---DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGD--WFEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcc--ccCcCCCCceeEEEECCC
Confidence 3599999999999999998742 23566666 45566555543 22 2223211 123344 79999998421
Q ss_pred c------c--------cccc---------cCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCce-EEEeecC
Q 015704 328 F------S--------VESK---------RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWH-VTLRETA 383 (402)
Q Consensus 328 ~------~--------~~~~---------~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~ 383 (402)
+ . |.+. ......++.++.++|||||++++.-.......++.++.+..|. +....+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d- 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKD- 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecC-
Confidence 1 1 1100 0113478888999999999999976555566788888777775 333332
Q ss_pred CCCCCceEEEEEEe
Q 015704 384 EGPHASYRILTADK 397 (402)
Q Consensus 384 ~~~~~~~~~l~~~k 397 (402)
. .+..++++++|
T Consensus 264 ~--~~~~r~~~~~~ 275 (275)
T PRK09328 264 L--AGRDRVVLGRR 275 (275)
T ss_pred C--CCCceEEEEEC
Confidence 2 25788888764
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-08 Score=95.48 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=67.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------Cc-ccccccCCCCCCCCCC-----cccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL-IGVMHDWCEPFDTYPR-----TYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------g~-~~~~~~~~~~~~~~~~-----sfD~v 322 (402)
.+|||+|||+|.++..|++... ...+++++| ++.|++.+.++ ++ +..+..-.....+++. ...++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~--~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALR--QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhc--cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4599999999999999988731 124788988 78888877665 12 2112221122122332 23456
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++.+.+.|+. +.+...+|.++.+.|+|||.|+|.
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 6667788876 445678999999999999999986
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.2e-08 Score=90.03 Aligned_cols=120 Identities=23% Similarity=0.346 Sum_probs=78.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..+++... ..+++.+| ++.+++.+.. .|+ +..++... +.+++ ++||+|+|.--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP---DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW--FEPLPGGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch--hccCcCCceeEEEECCC
Confidence 3699999999999999998732 12566666 4555554433 243 23333211 23455 79999999432
Q ss_pred cc------ccccc-----------------CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEe
Q 015704 328 FS------VESKR-----------------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 328 ~~------~~~~~-----------------~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 380 (402)
+. ++... .....++.++.|+|||||.+++.........+++++++-.|+....
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEE
Confidence 21 11110 0023678999999999999999877666778888888888865443
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=88.75 Aligned_cols=103 Identities=13% Similarity=0.066 Sum_probs=69.3
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc-----CCCcEEEeccccC-CCCCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-----GAPAMVAAFATRR-LPYPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~-----~~~~~~~~~d~~~-lp~~~~sfDlI 78 (402)
.++++||++|||+|..+..+++. +++++|+++..+..+...+..-. .....+...|... ++...++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35789999999999999888765 68899999877755543322111 1122344555332 23345789999
Q ss_pred EecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++... .++... ...+++.+.+.|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 97532 333222 1577899999999999999864
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-08 Score=86.08 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=56.4
Q ss_pred CCeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTR 89 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~ 89 (402)
...|.|+|||.+.++..+... .|...|+... ...+..+|+..+|++++++|++++..++ ...
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLSL--MGT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLSL--MGT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhhh--hCC
Confidence 358999999999999887654 6788887653 1235667899999999999999976442 234
Q ss_pred ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 90 DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 90 d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|...++.|+.|+|||||.|.|+.
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcHHHHHHHHheeccCcEEEEEE
Confidence 78999999999999999999985
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.2e-07 Score=82.68 Aligned_cols=136 Identities=16% Similarity=0.293 Sum_probs=92.8
Q ss_pred hhhHHhhHHHHHHHHHHHHhc-ccCCCC-------------cceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCCh
Q 015704 228 ELFKAESKYWNEIIESYVRAL-HWKKMK-------------LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTL 293 (402)
Q Consensus 228 ~~~~~~~~~w~~~~~~y~~~~-~~~~~~-------------~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~ 293 (402)
+-|+++-..+..+-+.|.... .|+.+- -..|-|+|||-+-+|.. ....|..+++++..+.
T Consensus 140 ~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~---~~~kV~SfDL~a~~~~--- 213 (325)
T KOG3045|consen 140 DLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS---ERHKVHSFDLVAVNER--- 213 (325)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc---cccceeeeeeecCCCc---
Confidence 567888888888888776443 333221 12399999999988872 2224788888887643
Q ss_pred hhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChh---hHHHHHHH
Q 015704 294 PVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID---VMDELQEI 369 (402)
Q Consensus 294 ~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~---~~~~~~~~ 369 (402)
=..-++ .. .|.+ +|.|++++-..|+- .++.+.++|..|||||||.++|.+-.. .....-+.
T Consensus 214 ------V~~cDm----~~-vPl~d~svDvaV~CLSLMg----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~ 278 (325)
T KOG3045|consen 214 ------VIACDM----RN-VPLEDESVDVAVFCLSLMG----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRA 278 (325)
T ss_pred ------eeeccc----cC-CcCccCcccEEEeeHhhhc----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHH
Confidence 111111 11 2344 89999888744432 467899999999999999999997442 24456667
Q ss_pred HHhcCceEEEeecCC
Q 015704 370 GKAMGWHVTLRETAE 384 (402)
Q Consensus 370 ~~~~~w~~~~~~~~~ 384 (402)
+.+|.+.+...+..+
T Consensus 279 l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 279 LTKLGFDVKHKDVSN 293 (325)
T ss_pred HHHcCCeeeehhhhc
Confidence 889999988877654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.3e-08 Score=87.94 Aligned_cols=92 Identities=20% Similarity=0.089 Sum_probs=58.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.|||+|||+|.+++.|++.-. ....|+.+| ++++++.+.+ .|+ +..++.-.....+...+||+|++...+
T Consensus 75 ~VLDiG~GsG~~~~~la~~~~--~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 75 KILEVGTGSGYQAAVCAEAIE--RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred EEEEECcCccHHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 599999999999988886510 011455555 3455544443 243 333432222212212699999999777
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.|++ .|+.|+|||||++++...
T Consensus 153 ~~~~---------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 153 STIP---------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred chhh---------HHHHHhcCcCcEEEEEEc
Confidence 6644 478899999999999643
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.9e-08 Score=76.22 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=63.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH---hcCc---ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY---DRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~---~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||.|.++..+++.+ ...+..+| +++.+..+. ..+. +..++.........+ .+||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASGP----GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 38999999999999998731 12455555 333443333 1111 333333223323223 799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++. ......++..+.+.|||||+++++
T Consensus 77 ~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 884 224689999999999999999987
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=93.18 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=85.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccc-cCCCCCCCCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMH-DWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~-~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
+|||+|||+|.++..|+.... ..+|+++| ++.+++.+.++ |. +..++ ++.+...+...+||+|+|.-=..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p---~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERP---DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 699999999999999886521 12566776 56677665543 33 33333 22222111125899999953110
Q ss_pred -----ccc-------------c-cC---CHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEE-EeecCCCC
Q 015704 330 -----VES-------------K-RC---NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT-LRETAEGP 386 (402)
Q Consensus 330 -----~~~-------------~-~~---~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~ 386 (402)
++. . .. .+..++.+..+.|||||++++--..+..+.+++++++..|+.. ...+..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~-- 408 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLA-- 408 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCC--
Confidence 000 0 00 0236677778899999999997777778899999988888643 444332
Q ss_pred CCceEEEEEEe
Q 015704 387 HASYRILTADK 397 (402)
Q Consensus 387 ~~~~~~l~~~k 397 (402)
+.++++++++
T Consensus 409 -G~dR~v~~~~ 418 (423)
T PRK14966 409 -GLDRVTLGKY 418 (423)
T ss_pred -CCcEEEEEEE
Confidence 4788888775
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-07 Score=85.91 Aligned_cols=117 Identities=20% Similarity=0.288 Sum_probs=70.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc-ccccc-cCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL-IGVMH-DWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~-~~~~~-~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
..|||+|||+|.++..++..++ ..|+.+| ++.++..+.+ .|+ +..++ ++. ..++ ++||+|++.--
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~----~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~---~~~~~~~fD~Vi~npP 110 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA----GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWA---RAVEFRPFDVVVSNPP 110 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchh---hhccCCCeeEEEECCC
Confidence 3599999999999999998753 1455555 4455554433 243 22222 222 1245 79999999743
Q ss_pred cccccc------------------cCCHHHHHHHhhhhccCCcEEEEEeChh-hHHHHHHHHHhcCceEEE
Q 015704 328 FSVESK------------------RCNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 328 ~~~~~~------------------~~~~~~~l~e~~RvLrpgG~~~~~~~~~-~~~~~~~~~~~~~w~~~~ 379 (402)
+..-.. ...+..++.++.|+|||||.+++..+.. ....+...+++-.|++..
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 221110 0114568889999999999999853321 233444445555555444
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.5e-08 Score=93.17 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=63.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCccc------ccc-cC-CCCCCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIG------VMH-DW-CEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~------~~~-~~-~~~~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+++|+ +|+++| +++|++.+.++.--. ... .+ +.++..++++||+|.|..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3699999999999999999986 677877 678887777663100 000 00 112233457999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVY 355 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~ 355 (402)
++.|+++. ....++..+.++ .|||.++
T Consensus 221 vL~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 99998752 334566667654 5655544
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.9e-08 Score=85.81 Aligned_cols=104 Identities=25% Similarity=0.356 Sum_probs=71.8
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccC-CC--CCCCCeeEE
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRR-LP--YPSQAFDLI 78 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~-lp--~~~~sfDlI 78 (402)
++.....+||||||.|.+...++.. .++|+|+...-+..+. +.+.+.++.+. +...|+.. ++ ++++++|.|
T Consensus 14 f~~~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 14 FGNDNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp HTSCCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheE
Confidence 3444458999999999998888754 7999999987776665 44445566654 55556544 22 457899999
Q ss_pred EecCcccccccCh--------HHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.+.. -.|+... ..++..++++|+|||.+.+.|
T Consensus 93 ~i~FP-DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 93 YINFP-DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp EEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 97654 5554321 589999999999999999997
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-07 Score=85.50 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-CCC-CCCCeeEEEecCcc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-LPY-PSQAFDLIHCSRCR 84 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~-lp~-~~~sfDlI~s~~~~ 84 (402)
+.+|||+|||+|.++..++.. .++++|+++.++..++ +.+...+. .+...|..+ ++. ..++||+|+++...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~-~N~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCAR-RNLADAGG--TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCC--EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 358999999999998877643 6899999988776655 33333332 345555432 221 13579999998754
Q ss_pred cccc---------------------cC----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWT---------------------RD----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~---------------------~d----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... .+ ...++..+.++|+|||.+++.+.
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4211 01 13667778899999999999863
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.4e-08 Score=87.44 Aligned_cols=91 Identities=22% Similarity=0.057 Sum_probs=57.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.|||+|||+|.+++.|++... ....|+++| ++.+++.+.++ |+ +..++.......+-...||+|++.....
T Consensus 80 ~VLDiG~GsG~~a~~la~~~~--~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 80 KVLEIGTGSGYQAAVLAEIVG--RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP 157 (215)
T ss_pred EEEEECCCccHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCCcc
Confidence 599999999999999998742 112355555 45556555433 43 3333322221111126899999885443
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+ +..++.+.|||||++++.-
T Consensus 158 ~---------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 158 K---------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred c---------ccHHHHHhcCcCcEEEEEE
Confidence 3 4456889999999999863
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-07 Score=82.87 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=65.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCC-CCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEP-FDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~-~~~~~~sfD~v~~~~~~ 328 (402)
.|||+|||+|.++..++.... ...|+.+| ++.+++.+.+ .|+ +..++...+. +......+|.++...
T Consensus 43 ~VLDiG~G~G~~~~~la~~~~---~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 43 VLWDIGAGTGTIPVEAGLLCP---KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred EEEEeCCCCCHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 599999999999999876431 12566666 4556655443 243 2333322211 111223467665531
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhc
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAM 373 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~ 373 (402)
...+..++.++.|+|||||++++.... +....+.+.++.+
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 224679999999999999999998765 2334455555554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=93.06 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEE--EeccccCCCC--CCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAFATRRLPY--PSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~--~~~d~~~lp~--~~~sfDlI~s 80 (402)
.++.+|||+|||+|..+..+++. .++++|+++..+..+. +.++..+....+ ...|....++ +.++||.|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 35679999999999888776653 7999999998776655 444445555333 3444443333 4578999995
Q ss_pred c----C-cccccccC----------------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 S----R-CRINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~----~-~~~~~~~d----------------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. . ..++-.++ ...+|.++.++|||||.++++|-
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2 1 11111111 24689999999999999999974
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-07 Score=86.03 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
...++||||+|.|..+..++.. .|.+.++|..| ....+++|.... +..+..-.+.+||+|.|.++ +.-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M-----r~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNv-LDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM-----RWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNV-LDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH-----HHHHHhCCCeEE----ehhhhhccCCceEEEeehhh-hhc
Confidence 4568999999999999999875 78888888655 355556765432 21223223468999999877 555
Q ss_pred ccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 88 TRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 88 ~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.+|..+|+++++.|+|+|.++++.
T Consensus 164 c~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 164 CDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred cCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 6689999999999999999999984
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=82.25 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=65.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..++++ .++++|+++.++........ . .....+...|+..+++++.+||.|+++.. ++.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~-~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~ 89 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA-A-ADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNI 89 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc-c-CCCEEEEECchhcCCccccCCCEEEECCC-ccc
Confidence 4569999999999999999876 78999999866644432221 1 12344667788888877778999998755 443
Q ss_pred ccChHHHHHHHHHh--cCCCeEEEEE
Q 015704 88 TRDDGILLLEVNRM--LRAGGYFAWA 111 (402)
Q Consensus 88 ~~d~~~~l~e~~r~--LkpgG~li~~ 111 (402)
. ...+..+.+. +.++|.+++.
T Consensus 90 ~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 S---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred H---HHHHHHHHhcCCCcceEEEEEE
Confidence 2 2333333322 4588888887
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.4e-07 Score=86.42 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=71.5
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|..+..+++. .++++|+++..+.... +.++..+... .+...|...++...++||.|++..
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLI-ANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 46679999999999988776542 6999999988776555 3444445443 355556655555556799999632
Q ss_pred ccc-------------cccc--------ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRI-------------NWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~-------------~~~~--------d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
... .+.. ....+|.++.+.|||||+++.+|-
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111 0111 113588999999999999999974
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=85.70 Aligned_cols=92 Identities=18% Similarity=0.302 Sum_probs=71.9
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
+..++||+|||-|+.+..|+..=. .|.+.+ +..|...-.+||. +-...+|.+ -+..||+|-|-|||-.-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~-----~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK-----EVYATEASPPMRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVLDRC 164 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc-----eEEeecCCHHHHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhhhcc
Confidence 566799999999999999987643 566666 5678877778898 323334432 13689999999988663
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
. .|..+|.+|++.|||+|.+++.
T Consensus 165 ~---~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 165 D---RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred C---CHHHHHHHHHHHhCCCCEEEEE
Confidence 3 4789999999999999999998
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=94.25 Aligned_cols=103 Identities=16% Similarity=0.245 Sum_probs=71.8
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEec-
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCS- 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~- 81 (402)
.++.+|||+|||+|..+..+++ ..++++|+++.++..+. +.+++.+... .+...|+..++ ++++||.|++.
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcC
Confidence 3567999999999987766653 26999999998886665 4455556543 45566666554 45789999952
Q ss_pred ---Cccc-------ccccC----------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 ---RCRI-------NWTRD----------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ---~~~~-------~~~~d----------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... .|..+ ...+|.++.+.|||||.++++|.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 1100 11111 13589999999999999999974
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-07 Score=87.26 Aligned_cols=121 Identities=21% Similarity=0.213 Sum_probs=77.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc-
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA- 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~- 325 (402)
.+|||+|||+|.++..++.+.. ...|+++| ++.+++.+.+. |+ +..++.-. +.++| .+||+|+|.
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~---~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFP---EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--FAALPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--hhccCCCCccEEEECC
Confidence 4699999999999999998742 12566666 45666655443 44 33333211 12345 589999995
Q ss_pred -----ccccccc-------cc---------CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeec
Q 015704 326 -----GLFSVES-------KR---------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 326 -----~~~~~~~-------~~---------~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
..+.++. .. .....++.++.++|||||++++.-..+. ..+++++....|.....++
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 1111111 00 0124778999999999999999766544 6788888776665554443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7e-07 Score=79.52 Aligned_cols=109 Identities=18% Similarity=0.162 Sum_probs=76.3
Q ss_pred HHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCccccc--ccCCCCCCCCCCcccE
Q 015704 245 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVM--HDWCEPFDTYPRTYDL 321 (402)
Q Consensus 245 ~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~--~~~~~~~~~~~~sfD~ 321 (402)
.+++..+.+.-+-|||||||+|.-++.|.+.|. ..+++| ++.||+.|.+|-+-|.+ .+--|.+|+=|.|||-
T Consensus 41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-----~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-----QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHhhCCCCCCcEEEEeccCCCcchheeccCCc-----eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 345556654555699999999999999999996 455666 67899999987553222 2445665644599999
Q ss_pred EEEccccccc---cccCC-HH----HHHHHhhhhccCCcEEEEEe
Q 015704 322 LHAAGLFSVE---SKRCN-MS----TIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 322 v~~~~~~~~~---~~~~~-~~----~~l~e~~RvLrpgG~~~~~~ 358 (402)
|++-..+.-+ ...++ |. ..+.-+..+|++|+..++.=
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 9887655432 22222 22 34666889999999999983
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-07 Score=92.31 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC----CCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP----YPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp----~~~~sfDlI 78 (402)
.++.+|||+|||+|..+..+++. .++++|++..++.... +.++..+... .+...|...++ +..++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 35679999999999888777653 6999999988776655 4445556543 45566766655 445789999
Q ss_pred EecCc-----ccccccC----------------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRC-----RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~-----~~~~~~d----------------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++... .++-.++ ...++.++.+.|||||.++.+|-
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 96321 1111111 24679999999999999999974
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.5e-07 Score=91.46 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=72.6
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC-CCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp-~~~~sfDlI~s~ 81 (402)
.++.+|||+|||+|..+.+++.. .++++|+++..+.... +.+.+.+... .+...|...++ +.+++||.|++.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 35679999999999877766542 7999999998886665 4445556543 45566766655 446789999963
Q ss_pred Ccc---cccccC------------------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCR---INWTRD------------------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~---~~~~~d------------------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
... -.+..+ ..++|.++.+.|||||.++++|-
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 111111 14568899999999999999973
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.2e-07 Score=86.41 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcC-CCcEEEeccccC-CCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRR-LPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~-~~~~~~~~d~~~-lp~~~~sfDlI~s~~ 82 (402)
.++.+|||||||+|.++..++.. .++++|+++..+..+...+..... ....+...|... ++-..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45679999999999998877654 688999988766444322211111 122345555322 222246899999753
Q ss_pred cc-ccccc--ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CR-INWTR--DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~-~~~~~--d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.- ..... ....+++++.+.|+|||.+++..
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 11 11111 12689999999999999999963
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-05 Score=76.15 Aligned_cols=129 Identities=19% Similarity=0.319 Sum_probs=78.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCccc--ccccCCCCCCCCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGLIG--VMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~--~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
+|||+|||+|-++..|++++. ...|+-+| +...++.+.+ .++-+ ++++. -+.+-+.+||+|+|.-=|+
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p---~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~--~~~~v~~kfd~IisNPPfh 235 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP---QAKLTLVDVNARAVESARKNLAANGVENTEVWASN--LYEPVEGKFDLIISNPPFH 235 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC---CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEec--ccccccccccEEEeCCCcc
Confidence 799999999999999999963 23444444 2333333322 23322 23321 1122235999999986665
Q ss_pred cccccC--CHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 330 VESKRC--NMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 330 ~~~~~~--~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
--.+.. --..++.+-.+-|+|||.++|--+- .....|++... ++..-... ++.+||-++|.
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k~ 300 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKKA 300 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEecC
Confidence 433210 0137888889999999999887542 33556666555 33333322 36888888873
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=84.64 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
...++||.|+|.|+++..++.. .|-.+|..+..+..+.............+.+..+++...+.++||+|++..++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4568999999999999988765 4444455444333332111111111123444455555444579999999999999
Q ss_pred cccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 87 WTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.++ ...+|+++...|+|+|++++-.
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 8854 5799999999999999999974
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=83.89 Aligned_cols=91 Identities=9% Similarity=0.119 Sum_probs=62.1
Q ss_pred CCeEEEECCccchhHHHHccC-------CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~-------~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+.+|||+|||+|.++..++.+ .++++|+++.++ +.+++......+...|+...++ +++||+|++|..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-----~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-----KLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-----HHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 579999999999988766532 688888887654 4444433334566667655554 468999999977
Q ss_pred cccccc----------C-hHHHHHHHHHhcCCCeE
Q 015704 84 RINWTR----------D-DGILLLEVNRMLRAGGY 107 (402)
Q Consensus 84 ~~~~~~----------d-~~~~l~e~~r~LkpgG~ 107 (402)
+..... . ...++..+.+++++|+.
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 663221 1 24578888887777775
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-07 Score=90.16 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=71.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.|||.|||+|++...++..+. .+.++| ++.+++.+..+ |+ +..++.-...++ ++ ++||+|++.-=+
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~-----~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA-----KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-LSSESVDAIATDPPY 258 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-cccCCCCEEEECCCC
Confidence 599999999999988877776 556666 45555543322 43 223333333333 34 799999995211
Q ss_pred c---ccc---ccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCc
Q 015704 329 S---VES---KRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGW 375 (402)
Q Consensus 329 ~---~~~---~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w 375 (402)
. ... .......+|.|+.|+|||||++++--+.. ..+++.+++-.|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 1 111 01124689999999999999998876652 245567777777
|
This family is found exclusively in the Archaea. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.1e-08 Score=83.70 Aligned_cols=71 Identities=21% Similarity=0.172 Sum_probs=53.9
Q ss_pred cCC-CCCChhhHHhcCc---------ccccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEE
Q 015704 286 PVS-GFNTLPVIYDRGL---------IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHV 354 (402)
Q Consensus 286 ~~~-~~~~~~~~~~rg~---------~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~ 354 (402)
++| +++|++.|.+|.- +..+..-.+.++ |+ ++||+|.+..++.|+.+ +..+|.|+.|+|||||.+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence 345 5778887755411 445555556654 66 79999999999998864 589999999999999999
Q ss_pred EEEeCh
Q 015704 355 YIRDSI 360 (402)
Q Consensus 355 ~~~~~~ 360 (402)
++.|-.
T Consensus 78 ~i~d~~ 83 (160)
T PLN02232 78 SILDFN 83 (160)
T ss_pred EEEECC
Confidence 988743
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-07 Score=84.76 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+++.+|||||||+|+++..++.. .|+++|..+.....+..... ..+.. ..+..+|...-.-+...||.|+++.
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~-~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLA-RLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHH-HHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHH-HhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 46789999999999988777643 47899998865555543333 33443 4456666433222346899999875
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..- +. -..+.+.|++||++++-.
T Consensus 150 a~~----~i---p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 150 AVP----EI---PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp BBS----S-----HHHHHTEEEEEEEEEEE
T ss_pred ccc----hH---HHHHHHhcCCCcEEEEEE
Confidence 532 21 244677799999999974
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-07 Score=83.02 Aligned_cols=118 Identities=23% Similarity=0.366 Sum_probs=68.1
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccc-cCCCCCCCCC-CcccEEEEc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMH-DWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~-~~~~~~~~~~-~sfD~v~~~ 325 (402)
-.+|||+|||+|.++..++.++.+. .|+.+| ++.+++.+.+ .++ +..++ ++. ...+ ..||+|+|.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~---~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~---~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDA---KVTAVDINPDALELAKRNAERNGLENVEVVQSDLF---EALPDGKFDLIVSN 105 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCE---EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT---TTCCTTCEEEEEE-
T ss_pred CCeEEEecCChHHHHHHHHHhCCCC---EEEEEcCCHHHHHHHHHHHHhcCcccccccccccc---ccccccceeEEEEc
Confidence 3459999999999999999987642 255555 3445544433 233 22333 433 3344 899999998
Q ss_pred cccccccc--cCCHHHHHHHhhhhccCCcEEEEE--eChhhHHHHHHHHHhcCceEEEeec
Q 015704 326 GLFSVESK--RCNMSTIMLEMDRMLRPGGHVYIR--DSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 326 ~~~~~~~~--~~~~~~~l~e~~RvLrpgG~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
-=+.--.+ ......++.+..+.|||||.+++- ........+++... ++.....
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~----~~~~~~~ 162 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG----DVEVVAK 162 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS------EEEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC----CEEEEEE
Confidence 44332221 112468899999999999988543 33333333444333 5554443
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-07 Score=87.70 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=66.1
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.++..+... .+...|....+.+.++||+|++...
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG 158 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc
Confidence 5679999999999998888753 3899999987776554 3344445443 3455565544444568999997643
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. .....+.+.|+|||.+++..
T Consensus 159 ~~-------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VD-------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hH-------HhHHHHHHhcCCCCEEEEEe
Confidence 22 22345678999999998863
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-07 Score=88.00 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=71.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+.... ...|+++| ++.+++.+.+. |+ +..++.-. +..+| ++||+|+|.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p---~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP---DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL--FAALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch--hhhCCCCCccEEEECC
Confidence 4699999999999999998732 23566777 56666555443 43 33343211 12345 6899999961
Q ss_pred ------cc-------cccccc---------CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcC
Q 015704 327 ------LF-------SVESKR---------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMG 374 (402)
Q Consensus 327 ------~~-------~~~~~~---------~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~ 374 (402)
-+ .|.+.. .....++.+..++|||||++++.-..+ ...++.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~ 278 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVP 278 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCC
Confidence 11 121110 012478899999999999999975544 345777766543
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-07 Score=86.69 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=72.3
Q ss_pred cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCccccc-ccCCCCCCCCCCcccEEEEcccc
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~-~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
..+++.+.|+|+|+|.|.++..++++..++. ++-.|-+..++.+.+..-+..+ ++.. .++|. +|+++..+||
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~---~~v~Dlp~v~~~~~~~~rv~~~~gd~f---~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLR---ATVFDLPEVIEQAKEADRVEFVPGDFF---DPLPV-ADVYLLRHVL 168 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSE---EEEEE-HHHHCCHHHTTTEEEEES-TT---TCCSS-ESEEEEESSG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCc---ceeeccHhhhhccccccccccccccHH---hhhcc-ccceeeehhh
Confidence 3466788999999999999999998865443 3333434444444443223222 2322 45778 9999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCC--cEEEEEeC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPG--GHVYIRDS 359 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpg--G~~~~~~~ 359 (402)
+++.+. +...+|+.+.+.|+|| |.++|-|.
T Consensus 169 h~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 999863 5689999999999999 99999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.6e-07 Score=80.52 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCC-CCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP-SQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~-~~sfDlI~s~~~~ 84 (402)
+++.+|||||||+|+.+..|++. +|+.+|..+.-...+. +.....+.. ..+.++|.. ..++ ...||.|+.+...
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~-~~L~~lg~~nV~v~~gDG~-~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQAR-RNLETLGYENVTVRHGDGS-KGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHH-HHHHHcCCCceEEEECCcc-cCCCCCCCcCEEEEeecc
Confidence 46789999999999999888775 7888888775443333 223344553 345555532 2233 4789999987553
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
-..+ ..+.+.||+||.+++-.
T Consensus 149 ~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 149 PEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCC-------HHHHHhcccCCEEEEEE
Confidence 3322 34567799999999874
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-07 Score=81.05 Aligned_cols=129 Identities=18% Similarity=0.274 Sum_probs=82.7
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh-----cCccc-ccccCCCCCCCCCCcccEEEEcc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD-----RGLIG-VMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~-----rg~~~-~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
......||.|||.|..+..|...-+ ..++++.. .+..++.|.+ .+-++ .+..-.+.+.|-+..||+|++.=
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp-~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEP-VEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---SEEEEEES--HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CCcceEEecccccchhHHHHHHHhc--CEeEEecc-CHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 3567799999999999999876644 33344333 2344555542 22223 33333445444447999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------hhHHHHHHHHHhcCceEEEeecCCC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------~~~~~~~~~~~~~~w~~~~~~~~~~ 385 (402)
++.||.|. +....|+--..-|||||.+++.|+. -..+.++.+.++=..++...+...+
T Consensus 131 ~lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 131 CLGHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp -GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred hhccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 99999975 7889999999999999999999753 1167888899999999888766544
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.6e-07 Score=83.05 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=77.1
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCC---CCCCCCeeEEEecCc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRL---PYPSQAFDLIHCSRC 83 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~l---p~~~~sfDlI~s~~~ 83 (402)
..+||||||.|.+...++++ .++|+|+...-+..+. +.+.+.++ +..+.+.|+..+ -+++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999888876 7999999987765554 66777788 566776664332 245569999997655
Q ss_pred ccccccCh--------HHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDD--------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~ 112 (402)
-.|+... ..+++.+.++|+|||.|.+.|
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 6665432 478999999999999999997
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-07 Score=83.54 Aligned_cols=92 Identities=20% Similarity=0.086 Sum_probs=57.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.+++.|+.... ....|+.+| ++++++.+.++ |+ +..++..... ...+ ..||+|++...
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~--~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~-~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVG--KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL-GYEENAPYDRIYVTAA 154 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-CCCcCCCcCEEEECCC
Confidence 3599999999999998887621 112455555 34566555443 33 3333332221 1123 69999999865
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+.+ +..++.+.|||||.+++-..
T Consensus 155 ~~~---------~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 155 GPD---------IPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred ccc---------chHHHHHhhCCCcEEEEEEc
Confidence 543 23466779999999999643
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.8e-07 Score=82.34 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=65.2
Q ss_pred CCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccccccC
Q 015704 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 90 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d 90 (402)
...|.|+|||.+.++..- ...|...|+... ...+..+|+.++|+++++.|++++.. --...|
T Consensus 181 ~~vIaD~GCGEakiA~~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CL--SLMgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCL--SLMGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeH--hhhccc
Confidence 457999999999877511 126777777643 22356678999999999999999643 334458
Q ss_pred hHHHHHHHHHhcCCCeEEEEEe
Q 015704 91 DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 91 ~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...++.|++|+|++||.+.+..
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEe
Confidence 8999999999999999999984
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-06 Score=82.69 Aligned_cols=130 Identities=20% Similarity=0.334 Sum_probs=84.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCccc--ccc-cCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGLIG--VMH-DWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~--~~~-~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
+|||+|||+|..|.+|+..+. ..+|+++| ++..+..|.+ .|+.. .++ +|. ...+..||+|+|.=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~---~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf---~~~~~~fDlIVsNP-- 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP---DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF---EPLRGKFDLIVSNP-- 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc---CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc---cccCCceeEEEeCC--
Confidence 799999999999999999864 24566666 5555554433 35411 111 333 33445999999952
Q ss_pred cccccc----------CC--------------HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCc-e-EEEeec
Q 015704 329 SVESKR----------CN--------------MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGW-H-VTLRET 382 (402)
Q Consensus 329 ~~~~~~----------~~--------------~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w-~-~~~~~~ 382 (402)
-|++.. -+ ...++.+..++|+|||.+++.-.-.....+++++....+ . +..+..
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d 264 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKD 264 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEec
Confidence 111111 01 237888899999999999999886678888999888884 3 233332
Q ss_pred CCCCCCceEEEEEEe
Q 015704 383 AEGPHASYRILTADK 397 (402)
Q Consensus 383 ~~~~~~~~~~l~~~k 397 (402)
-.+.+++..+++
T Consensus 265 ---~~g~~rv~~~~~ 276 (280)
T COG2890 265 ---LFGRDRVVLAKL 276 (280)
T ss_pred ---CCCceEEEEEEe
Confidence 224666666654
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-07 Score=82.26 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=78.4
Q ss_pred hcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------ccccccCCCCCCCC---C
Q 015704 247 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTY---P 316 (402)
Q Consensus 247 ~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------~~~~~~~~~~~~~~---~ 316 (402)
+++........||.+|||.|...--|.+...+ ...-|-+.| +++.+.+..++-- -..+++.+.+-... +
T Consensus 64 l~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n-~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~ 142 (264)
T KOG2361|consen 64 LLPVDEKSAETILEVGCGVGNTVFPLLKTSPN-NRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEE 142 (264)
T ss_pred hhCccccChhhheeeccCCCcccchhhhcCCC-CCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCc
Confidence 33433333337999999999988888777543 224555666 6666665555422 34555555443222 3
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.|+|+|.+--||+.+++ ..+..++..+.|+|||||.+++||
T Consensus 143 ~svD~it~IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 143 GSVDIITLIFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred CccceEEEEEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEee
Confidence 79999999999999884 467899999999999999999997
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=87.54 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=73.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCC----CCCCCCeeEEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRL----PYPSQAFDLIH 79 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~l----p~~~~sfDlI~ 79 (402)
++.+|||+|||+|.++...+.. .++++|+++..+..+. +.+..++.. ..+..+|+... ....++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4679999999999987664432 7899999998886665 444445543 34556664332 11246899999
Q ss_pred ecCccccccc--------ChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHH
Q 015704 80 CSRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 123 (402)
Q Consensus 80 s~~~~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~ 123 (402)
++...+.-.. +...++..+.++|+|||.++.++-...-+..++.
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~ 350 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQ 350 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHH
Confidence 9866432211 1234556678999999999987533333333333
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=82.02 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=65.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcC----CCcEEEeccccC-CCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFATRR-LPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~----~~~~~~~~d~~~-lp~~~~sfDlI~ 79 (402)
.++++||++|||+|.++..+++. .++++|+++..+..+...+....+ ....+...|... +....++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 35669999999999988877654 588899988766544432222111 112233333211 222247899999
Q ss_pred ecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+... .+.... ...+++.+.+.|+|||.+++..
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 7543 222212 2578899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.4e-07 Score=89.71 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=70.7
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC--CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp--~~~~sfDlI~s 80 (402)
.++.+|||+|||+|..+..+++. .++++|+++..+..+. +.+...+... .+...|...++ ++ ++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 35679999999999988777653 6999999987775554 4444555543 45556665543 33 68999997
Q ss_pred cCcccc-----------cccC----------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRIN-----------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~-----------~~~d----------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...... |... ...++.++.++|||||.++.+|.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 532110 1101 13578999999999999999863
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=84.27 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=65.6
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHH--HH--HHc---CCCcEEEeccccC-CCCCCCCee
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FA--LER---GAPAMVAAFATRR-LPYPSQAFD 76 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~--~a--~~~---~~~~~~~~~d~~~-lp~~~~sfD 76 (402)
.++.+||++|||+|..++.+++. .++++|+++.++..+... .. ... .....+...|... ++...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45689999999999888877764 688888887666444310 00 000 1122344455332 333457899
Q ss_pred EEEecCccccccc---C--hHHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCRINWTR---D--DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~~~~~~---d--~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|++... ..... . -..+++.+.+.|+|||.++...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9997632 21110 1 1568999999999999998874
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=82.31 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=76.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Ccccccc-cCCCCCCC-CCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMH-DWCEPFDT-YPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~-~~~~~~~~-~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..+++... ...|+.+| ++.+++.+.+. |. ..+. ++.+.++. +..+||+|++.-=+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~---~~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALD---GIELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCC
Confidence 3699999999999999987521 12455665 45555544432 32 2222 22222221 23579999986311
Q ss_pred ------ccccc-------c------CC----HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecC
Q 015704 329 ------SVESK-------R------CN----MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 329 ------~~~~~-------~------~~----~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
..+++ . .+ +..++....++|||||++++.-..+....+...+++..|+..+..++
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcc
Confidence 11110 0 00 23677777899999999999876666778888888777776666554
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=79.04 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=86.7
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCCCCCCC-CC-CcccEEEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDT-YP-RTYDLLHA 324 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~~~~~~-~~-~sfD~v~~ 324 (402)
.+.|||+|||.|..+-.|+++--+ ..|++++ .+.+.+.|.+ .++ +.++|+-...+.. .+ .+||+|+|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~---a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK---AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC---CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 677999999999999999998322 3455544 2333333322 122 4555433222222 34 57999999
Q ss_pred cccc---------------ccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCC
Q 015704 325 AGLF---------------SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAE 384 (402)
Q Consensus 325 ~~~~---------------~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 384 (402)
.-=+ .|..-.|+.+++++=-.++|||||++.+--+.+....+-..+++.+|......-.+
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V~ 196 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVY 196 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEec
Confidence 5221 12233467789999999999999999999999999999999999999977654433
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.5e-08 Score=78.56 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=59.9
Q ss_pred eEEeccccchHHHHHHhhcC-CCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCC-CCC-CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFD-TYP-RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~-~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~-~~~-~sfD~v~~~ 325 (402)
+|||+|||.|.++.++++.+ . +++.+| .+..++.+..+ ++ +..++.....+. .++ ++||+|+++
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~-----~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAA-----RVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTC-----EEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred EEEEcCcchHHHHHHHHHHCCC-----eEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 59999999999999999987 5 444444 23334333332 22 222221111222 355 899999998
Q ss_pred ccccccc-c----cCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 326 GLFSVES-K----RCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 ~~~~~~~-~----~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
--+.... . ......++.++.|+|||||.+++--
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7776421 1 1134588999999999999998754
|
... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=77.56 Aligned_cols=143 Identities=19% Similarity=0.220 Sum_probs=72.7
Q ss_pred cCCCCcceEEeccccchHHHHHHhhcC---CCceEEEeccCCCCCChhhHHhcCccc---ccccCCCCCCCCCCcccEEE
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIEQK---FDCWVMNVVPVSGFNTLPVIYDRGLIG---VMHDWCEPFDTYPRTYDLLH 323 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~~~---~~~~~~~v~~~~~~~~~~~~~~rg~~~---~~~~~~~~~~~~~~sfD~v~ 323 (402)
...+.-.+|||+||++|+|+..+.+++ ..|+.+++.+.+....+... +|-+. ......+.+..-...||+|.
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 445566789999999999999999997 43444454444211111111 11110 01011111111115899999
Q ss_pred Ecccccccccc--------CCHHHHHHHhhhhccCCcEEEEEe-----ChhhHHHHHHHHHhcCceEEEeecCCCCCCce
Q 015704 324 AAGLFSVESKR--------CNMSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETAEGPHASY 390 (402)
Q Consensus 324 ~~~~~~~~~~~--------~~~~~~l~e~~RvLrpgG~~~~~~-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 390 (402)
|........++ ......|.=+.+.|||||.+++.- ..+....++...+.+++- .+.. ..+...|
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~--Kp~~-sr~~s~E 173 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV--KPPS-SRSESSE 173 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE--E-TT-SBTTCBE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE--ECcC-CCCCccE
Confidence 98643322110 011244444457899999999862 234555666655554332 2221 2355679
Q ss_pred EEEEEEe
Q 015704 391 RILTADK 397 (402)
Q Consensus 391 ~~l~~~k 397 (402)
.+|+|+.
T Consensus 174 ~Ylv~~~ 180 (181)
T PF01728_consen 174 EYLVCRG 180 (181)
T ss_dssp EEEESEE
T ss_pred EEEEEcC
Confidence 9999874
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.9e-07 Score=81.08 Aligned_cols=88 Identities=22% Similarity=0.185 Sum_probs=58.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC--CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP--RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~--~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+..+. .|..+| ++++++.+.++ |+ +...+.-. ...++ .+||+|++..
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG--WKGWPAYAPFDRILVTA 152 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc--ccCCCcCCCcCEEEEcc
Confidence 3599999999999998887753 455555 35555555443 33 33333211 12233 6899999986
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+.++ ..++.+.|||||.+++.-.
T Consensus 153 ~~~~~---------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 AAPEI---------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred Cchhh---------hHHHHHhcCCCcEEEEEEc
Confidence 55443 4567899999999998744
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.9e-06 Score=81.62 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=65.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc----CCCcEEEeccccC-CC-CCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFATRR-LP-YPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~~d~~~-lp-~~~~sfDlI 78 (402)
.++++||+||||.|..+..+++. +++.+|+++..+..+...+.... .....+...|... +. .++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 45789999999999999888765 57778888765544432222111 1122344555321 11 235689999
Q ss_pred EecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++... .++... ...+++.+.+.|+|||.++...
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 97532 332221 1468999999999999998753
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=73.06 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=70.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccc-cCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFAT-RRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~-~~lp~~~~sfDlI~s~~ 82 (402)
.++.+++|+|||||+++..++.. +++++|-++..+.... +.+++.+.++. +..+++ +.++ ...+||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEECC
Confidence 46789999999999999887722 8999998887665444 45555566655 344443 2233 112799999654
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. .+.+..++.+...|||||.++...
T Consensus 111 g-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 111 G-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred C-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 3 356899999999999999999984
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.9e-06 Score=81.28 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=64.1
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-Cc------ccccccC-CCCCCCCCCcccEEEE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-GL------IGVMHDW-CEPFDTYPRTYDLLHA 324 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-g~------~~~~~~~-~~~~~~~~~sfD~v~~ 324 (402)
..++|||+|||.|.++..++.... ...|+.+| .+.+++.+.+. ++ +..++.- .+-+...+.+||+|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p---~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP---DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC---CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 345799999999999999987632 23566666 46677766654 21 2222221 1112334578999998
Q ss_pred ccccccc--cccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 325 AGLFSVE--SKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 325 ~~~~~~~--~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.. +... +....-...+.++.++|+|||.+++-
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 52 3211 11111269999999999999999983
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-06 Score=77.86 Aligned_cols=100 Identities=17% Similarity=0.269 Sum_probs=61.9
Q ss_pred CeEEEECCccchhHHHHccC--C--ceEEeCCccchHHHHHHHHHHcCCCcEE--EeccccC--CCC------CCCCeeE
Q 015704 12 RVVMDAGCGVASFGAYLLPR--N--VITMSIAPKDVHENQIQFALERGAPAMV--AAFATRR--LPY------PSQAFDL 77 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~--v~~vdi~~~~~~~a~~~~a~~~~~~~~~--~~~d~~~--lp~------~~~sfDl 77 (402)
.+|||||||||..+.++++. . ..-.|...... ........+.+.+++. ...|+.. .|. ..++||.
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 36999999999888888776 2 21223332211 1112333444443321 1123222 222 3568999
Q ss_pred EEecCcccccccC--hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 78 IHCSRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 78 I~s~~~~~~~~~d--~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|.++ +|+.+- ...+|+.+.++|++||.|++..+
T Consensus 106 i~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 106 IFCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eeehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 999877 666533 36899999999999999999853
|
The function of this family is unknown. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-06 Score=76.72 Aligned_cols=96 Identities=21% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
.++.+|||.|.|+|.++.+|+.. .++..|+.......|..+.. +.++.. .+...|+.+.-+++ .||.|+.-
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~-~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS-EFGLGDRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHH-HhccccceEEEecccccccccc-ccCEEEEc
Confidence 36789999999999999999843 78888888766655543333 334433 34445655554444 89999953
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. ++|..++..+.+.|+|||.+++-.
T Consensus 171 -----m-p~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 171 -----L-PDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred -----C-CChHHHHHHHHHHhCCCcEEEEEc
Confidence 2 388999999999999999999985
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=88.06 Aligned_cols=103 Identities=15% Similarity=0.029 Sum_probs=66.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHH--HHHHc-----CCCcEEEeccccC-CCCCCCCee
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQ--FALER-----GAPAMVAAFATRR-LPYPSQAFD 76 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~--~a~~~-----~~~~~~~~~d~~~-lp~~~~sfD 76 (402)
.++++|||+|||+|..+..+.+. +++.+|+++..+..++.. ...-+ +....+...|... +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45689999999999998887754 688888887666444321 10000 1122344555433 222347899
Q ss_pred EEEecCcccccccCh-----HHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCRINWTRDD-----GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~~~~~~d~-----~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|+++.. .+..... ..+++.+.+.|||||.+++..
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9998643 3322211 468899999999999999975
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-06 Score=77.45 Aligned_cols=102 Identities=16% Similarity=0.326 Sum_probs=65.2
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHH---HcC-CC------------------------
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL---ERG-AP------------------------ 57 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~---~~~-~~------------------------ 57 (402)
.+..+|||||.+|.++..+++. .+.|+||++.-+..|...... ..+ ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4568999999999988888764 799999998766544321100 000 00
Q ss_pred ------cE------EEeccccCCCCCCCCeeEEEecC----cccccccC-hHHHHHHHHHhcCCCeEEEEE
Q 015704 58 ------AM------VAAFATRRLPYPSQAFDLIHCSR----CRINWTRD-DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 58 ------~~------~~~~d~~~lp~~~~sfDlI~s~~----~~~~~~~d-~~~~l~e~~r~LkpgG~li~~ 111 (402)
+. +.....+-+.+....||+|+|-. +.+.|.++ ...+|+.+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 00000011223456799999843 23445544 478999999999999999998
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-06 Score=79.45 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC----------------CcEEEeccccCCCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA----------------PAMVAAFATRRLPYP 71 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~----------------~~~~~~~d~~~lp~~ 71 (402)
++.+||..|||.|.-...|+++ .|+|+|+++..+..+. .+++. ...+.++|.-.++..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~----~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF----EENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH----HHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH----HHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4569999999999999999988 7999999986554332 22221 123456676665533
Q ss_pred C-CCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEE
Q 015704 72 S-QAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 72 ~-~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~ 111 (402)
. ++||+|+=..++..++++. .+..+.+.++|+|||.+++.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 3 5799999766656665553 78999999999999995444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.1e-06 Score=79.11 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=73.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCC--CCChhhHHhcCc--ccccccCCCC-CCC-CC-CcccEEEEcccc-
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG--FNTLPVIYDRGL--IGVMHDWCEP-FDT-YP-RTYDLLHAAGLF- 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~--~~~~~~~~~rg~--~~~~~~~~~~-~~~-~~-~sfD~v~~~~~~- 328 (402)
.+||||||.|.|...+|.+..+...+.|..... ......+..+|+ +..++.-+.. +.. ++ +|+|-|+..-==
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 699999999999999999876544444433321 233455555566 4444432222 111 34 899998875100
Q ss_pred ----ccccccCCHHHHHHHhhhhccCCcEEEEEeC-hhhHHHHHHHHHh--cCceEEE
Q 015704 329 ----SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKA--MGWHVTL 379 (402)
Q Consensus 329 ----~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-~~~~~~~~~~~~~--~~w~~~~ 379 (402)
.|...|=--...|.++.|+|||||.+.+... ....+.+.+.+.. -.++...
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcc
Confidence 1222111114899999999999999999754 4445555555555 4666554
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-06 Score=86.55 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC----CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR----LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~----lp~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+.. ..+...|+.. +++.+++||+|+++.
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~-~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAR-ENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 4579999999999999888865 7899999998887665 444444543 3455666432 335567899999875
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
... .....+..+.+ ++|++.++++..|
T Consensus 376 Pr~----g~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 376 PRA----GAAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred CCc----ChHHHHHHHHh-cCCCeEEEEEeCh
Confidence 422 13355555555 6999999999743
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=69.92 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=78.1
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhH---Hhc-Cc--ccccccC-CCCCCCCCCccc
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVI---YDR-GL--IGVMHDW-CEPFDTYPRTYD 320 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~---~~r-g~--~~~~~~~-~~~~~~~~~sfD 320 (402)
.+.++. .++|+|||+|+.+..++..+ ....|.++|. +..++.+ .+| |+ +..+..+ .+.++..| +||
T Consensus 31 ~~~~g~--~l~DIGaGtGsi~iE~a~~~---p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~d 104 (187)
T COG2242 31 RPRPGD--RLWDIGAGTGSITIEWALAG---PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPD 104 (187)
T ss_pred CCCCCC--EEEEeCCCccHHHHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCC
Confidence 444454 49999999999999998444 3345666652 3333322 222 33 3333333 33344444 899
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCc-eEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGW-HVTLR 380 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w-~~~~~ 380 (402)
.|+-..- -+++.+|......|||||.++..- ..+.....-+.++++.+ ++.-.
T Consensus 105 aiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 105 AIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred EEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEE
Confidence 9999853 246799999999999999999985 34556667777888888 54443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-06 Score=91.45 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~-lp~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+..++.. ..+...|+.+ +.-..++||+|+++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~-~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAE-RNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4679999999999999888864 5999999998887666 344444443 3455666432 111146899999976
Q ss_pred cccccc----------cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWT----------RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~----------~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..+.-. .+...++..+.++|+|||.+++++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 543211 1235678888999999999999863
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-06 Score=82.61 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=60.6
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------Cc-----ccccccCCCCCCCCC-Cccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL-----IGVMHDWCEPFDTYP-RTYD 320 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------g~-----~~~~~~~~~~~~~~~-~sfD 320 (402)
..++|||+|||.|+++..++++. .+.+|+.+| .+.+++.+.+. +. +..++.-...+...+ ++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~---~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP---SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC---CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 45679999999999999998862 122455555 34566555442 11 222222111111123 7999
Q ss_pred EEEEccccccccccC-CHHHHHHHhhhhccCCcEEEEE
Q 015704 321 LLHAAGLFSVESKRC-NMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~-~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+|++...-.+..... --...+.++.|.|+|||.+++.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999863222111100 0146788999999999999986
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-06 Score=77.71 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=65.7
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-----CCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-----YPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp-----~~~~sfD 76 (402)
++++|||+|||+|..+..++.. .++++|+++.....+. +...+.+.. ..+..+|+.+ ++ .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 5779999999999766555432 7999999987665555 333444543 2344555332 12 1246899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+|+.... .+....++..+.+.|+|||.+++.
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9996422 223467899999999999999886
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-06 Score=78.85 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=66.1
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|+|||+|+|.++..++++ +++..|+-. .++.+++ .....+..+|.. -++|. +|+++...++|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~------v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE------VIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH------HHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHh------hhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 4568999999999999888765 556666522 2233333 233456667765 55664 99999999999
Q ss_pred ccccCh-HHHHHHHHHhcCCC--eEEEEEe
Q 015704 86 NWTRDD-GILLLEVNRMLRAG--GYFAWAA 112 (402)
Q Consensus 86 ~~~~d~-~~~l~e~~r~Lkpg--G~li~~~ 112 (402)
.|.++. ..+|+++++.|+|| |.+++..
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 998553 68999999999999 9999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-06 Score=76.03 Aligned_cols=101 Identities=11% Similarity=0.019 Sum_probs=64.9
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC-CCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR-LPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~-lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..++.+ .++++|.++.....+. +.++..+.. ..+...|... ++...++||+|+++..+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~-~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI-KNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 4579999999999999754332 7899999886665444 333334443 3355555433 22234579999998663
Q ss_pred cccccChHHHHHHHHH--hcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNR--MLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r--~LkpgG~li~~~~ 113 (402)
.. .-...++..+.. +|+|+|++++++.
T Consensus 132 ~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RK--GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC--ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22 113455555554 4899999999953
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-06 Score=78.99 Aligned_cols=103 Identities=23% Similarity=0.374 Sum_probs=59.4
Q ss_pred CCCeEEEECCccc----hhHHHHcc------C---CceEEeCCccchHHHHHH------------HHHHc------C--C
Q 015704 10 LLRVVMDAGCGVA----SFGAYLLP------R---NVITMSIAPKDVHENQIQ------------FALER------G--A 56 (402)
Q Consensus 10 ~~~~VLDiGcG~G----~~~~~L~~------~---~v~~vdi~~~~~~~a~~~------------~a~~~------~--~ 56 (402)
+.-+|+.+||++| +++..+.+ . .+.|+|+++..+..|... ...++ + .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 44444444 1 678888887666554320 00000 0 0
Q ss_pred --------CcEEEeccccCCCCCCCCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 57 --------PAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 57 --------~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+...+..+.+.+.+.||+|+|.++++++..+. .++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 11244445444334457899999999988887553 689999999999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.2e-06 Score=77.42 Aligned_cols=94 Identities=9% Similarity=0.069 Sum_probs=66.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh-----------------cCc-ccccccCCCCCCCCC-
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD-----------------RGL-IGVMHDWCEPFDTYP- 316 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~-----------------rg~-~~~~~~~~~~~~~~~- 316 (402)
..||+.|||.|.=+.+|+++|++|..+++.+. .++.+++ +|. +..+ +.++-.++
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~---~gD~f~l~~ 117 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEK----AVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY---VADIFNLPK 117 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHH----HHHHHHHHcCCCcceecccccceeccCceEEE---EccCcCCCc
Confidence 36999999999999999999995555444443 3332222 222 2222 12222221
Q ss_pred -----CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 317 -----RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 317 -----~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
..||+|+=...|.+++. ..-..+..-|.++|||||.+++-
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 47999999999999974 45679999999999999998775
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.2e-06 Score=72.49 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=77.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh----hhHHhcCc---ccccc-cCCCCCCCCCCcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL----PVIYDRGL---IGVMH-DWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~----~~~~~rg~---~~~~~-~~~~~~~~~~~sfD~v~~~~~ 327 (402)
+|||+|||-|.+-..|++.|+. -.++++| ++..+ ++|..+|+ |.+.. +...+ -.++..||+|+=-..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 6999999999999999999863 2377777 65555 34555565 21111 22221 123489999997766
Q ss_pred cccc---cc--cCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCc
Q 015704 328 FSVE---SK--RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGW 375 (402)
Q Consensus 328 ~~~~---~~--~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w 375 (402)
+-.+ ++ ...+..++--+.++|+|||.|+|+.=+-..+.+-+....-..
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNF 198 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCe
Confidence 6442 11 112357888899999999999999887667777666555543
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-06 Score=81.70 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCeEEEECCccc----hhHHHHccC--------CceEEeCCccchHHHHHHH----H--------HHcCC----------
Q 015704 11 LRVVMDAGCGVA----SFGAYLLPR--------NVITMSIAPKDVHENQIQF----A--------LERGA---------- 56 (402)
Q Consensus 11 ~~~VLDiGcG~G----~~~~~L~~~--------~v~~vdi~~~~~~~a~~~~----a--------~~~~~---------- 56 (402)
.-+|+..||.|| +++..+.+. .|+|+|++...+..+.... . +++..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 344444331 5888999887776554310 0 00000
Q ss_pred ---------CcEEEeccccCCCCC-CCCeeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 57 ---------PAMVAAFATRRLPYP-SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 57 ---------~~~~~~~d~~~lp~~-~~sfDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+...+....+++ .+.||+|+|.++++|+..+ ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 012333444443333 5789999999998888644 4789999999999999998884
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.3e-06 Score=73.22 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=60.0
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcC----CCcEEEeccccC-C---CCCCCCee
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFATRR-L---PYPSQAFD 76 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~----~~~~~~~~d~~~-l---p~~~~sfD 76 (402)
.++.+|||+|||+|..+..++.. .|+..|..+ ..+.....++.++ ....+...+-.. . .....+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 46789999999999666555543 788889877 3333334444332 112233322111 1 12346899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|+++.+++ .....+.+++-+.++|+|+|.++++..
T Consensus 122 ~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 999998844 454568899999999999999888853
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-06 Score=85.19 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=67.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEcc--
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAG-- 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~-- 326 (402)
+|||+|||+|+.+.++++.-. -...|+++| ++.+++.+.++ |+ +..++.-...++.+. ++||.|++.-
T Consensus 240 ~VLD~cagpGgkt~~la~~~~--~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMK--DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcC--CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 599999999999999887510 112577777 45666554433 44 233332222333343 7899999731
Q ss_pred -ccccccccCC----------------HHHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHH
Q 015704 327 -LFSVESKRCN----------------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGK 371 (402)
Q Consensus 327 -~~~~~~~~~~----------------~~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~ 371 (402)
-+..+....+ -..+|.+..+.|||||+++.+. +.+-.+.++.+++
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 1111111000 1367999999999999999984 2233445555554
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.7e-06 Score=79.09 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=63.3
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc--------C-c----ccccccCCCC-CCCCCC
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR--------G-L----IGVMHDWCEP-FDTYPR 317 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r--------g-~----~~~~~~~~~~-~~~~~~ 317 (402)
...++||++|||.|+.++.+.+.+ .+..|+.+| .+.+++.|.+. + + +..+++-... +..-++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~---~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE---TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC---CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 345689999999999998888764 233556665 46677777751 1 1 2122211111 111236
Q ss_pred cccEEEEcccccccc---ccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 318 TYDLLHAAGLFSVES---KRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 318 sfD~v~~~~~~~~~~---~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+||+|++.-. .... ..---...+..+.|.|+|||.+++...
T Consensus 226 ~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 226 LYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 8999999821 1000 000014688999999999999988753
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-06 Score=80.19 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC-CCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY-PSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~-~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.++..+.. ..+...|+..+.. ..++||+|+++...-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 4579999999999999988876 7999999998887665 445555554 4466667655432 235799999875411
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.....+.++...++|++.+++++.|
T Consensus 252 ----G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 252 ----GIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred ----CccHHHHHHHHHcCCCeEEEEECCc
Confidence 1222333444447889999998643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.8e-06 Score=85.65 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC--CCCCCCeeEEEe
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL--PYPSQAFDLIHC 80 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~l--p~~~~sfDlI~s 80 (402)
+.....+||||||.|.++..++.. .++|+|+...-+..+. +.+.+.++.+. +...++..+ -++++++|.|+.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 445678999999999998888765 7999999986665554 44455666555 344444322 267889999997
Q ss_pred cCcccccccCh--------HHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~ 112 (402)
++. -.|+... ..++..++++|+|||.+.+.|
T Consensus 424 ~FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 424 LFP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ECC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 755 6665432 588999999999999999997
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.6e-06 Score=84.41 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=71.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC---C-CCcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT---Y-PRTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~---~-~~sfD~v~~~ 325 (402)
.|||+|||+|+.+.+|++... ....|+++| +..+++.+.++ |+ +..++.-...++. + +++||.|++.
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~--~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMG--DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhC--CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 599999999999999987621 112566666 45555444332 44 3333322222221 2 3799999963
Q ss_pred ------ccccccccc------CC-------HHHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHHhc-CceE
Q 015704 326 ------GLFSVESKR------CN-------MSTIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAM-GWHV 377 (402)
Q Consensus 326 ------~~~~~~~~~------~~-------~~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~~~-~w~~ 377 (402)
+++.+-++. .+ -..+|.++.|+|||||+++.++ +.+-...++.++++- .|++
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 344332210 01 2478999999999999999874 223355666666553 3553
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=73.13 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=73.2
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE--EEe----cc-ccCCCCCCCCeeEEE
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM--VAA----FA-TRRLPYPSQAFDLIH 79 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~----~d-~~~lp~~~~sfDlI~ 79 (402)
+..|||+|||+|.++..++.. .++++|.+...+.-+. +.++...+... +.. .+ ....+...+.+|+++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 347999999999888777654 7899999987765554 44444443332 121 12 233345578999999
Q ss_pred ecCcccccccC-------------------------hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHH
Q 015704 80 CSRCRINWTRD-------------------------DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWK 127 (402)
Q Consensus 80 s~~~~~~~~~d-------------------------~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~ 127 (402)
||.....-.+. ...++.-+.|.|+|||++.+... .......+.+.|.
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~-~~~~~~~lv~~~m 299 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV-ERKEHSYLVRIWM 299 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec-ccccCcHHHHHHH
Confidence 98654432110 11345667899999999999963 2233455566664
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-06 Score=86.64 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=65.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCC-CcccEEEEc--
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYP-RTYDLLHAA-- 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~-~sfD~v~~~-- 325 (402)
..|||+|||+|+.+.++++... ....|+++| ++.+++.+.+ .|+ +..+..-...++ + .+||.|++.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~--~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQ--NRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhC--CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcCC
Confidence 3599999999999988876411 112566666 4555544433 354 222322222221 3 689999952
Q ss_pred ----ccccccc------ccCC-------HHHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHh
Q 015704 326 ----GLFSVES------KRCN-------MSTIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKA 372 (402)
Q Consensus 326 ----~~~~~~~------~~~~-------~~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~ 372 (402)
.++.+-+ ...+ -..+|.++.++|||||+++++.- .+-...++.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 2222110 0001 12689999999999999999962 2224445555554
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.3e-06 Score=85.28 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=67.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCC-CC-CcccEEEE---
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDT-YP-RTYDLLHA--- 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~-~~-~sfD~v~~--- 324 (402)
..|||+|||+|+.+..+++++.. ..|+++| ++.+++.+.++ |+ +..+..-...++. ++ .+||.|++
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 35999999999999999987421 3566666 45555544333 33 2222222222222 34 68999994
Q ss_pred -cc--cccccc------ccCC-------HHHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHh
Q 015704 325 -AG--LFSVES------KRCN-------MSTIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKA 372 (402)
Q Consensus 325 -~~--~~~~~~------~~~~-------~~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~ 372 (402)
+. ++.+-+ ...+ ...+|.+..++|||||+++++.- .+-.+.++.++++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 32 222111 0001 13689999999999999998852 2223445555543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=88.13 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=68.2
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC-----------------CcEEEeccccCCC
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-----------------PAMVAAFATRRLP 69 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~-----------------~~~~~~~d~~~lp 69 (402)
+.+|||+|||+|.++..++.. .++++|+++.++..+..+. +.++. ...+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na-~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL-YLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCcccccccccccccccccccEEEEECchhhh-
Confidence 458999999999998888753 6999999998887666433 33211 134555564332
Q ss_pred CCC--CCeeEEEecCcccccc---------------------------------cCh----HHHHHHHHHhcCCCeEEEE
Q 015704 70 YPS--QAFDLIHCSRCRINWT---------------------------------RDD----GILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 70 ~~~--~sfDlI~s~~~~~~~~---------------------------------~d~----~~~l~e~~r~LkpgG~li~ 110 (402)
+.+ ..||+|+||...+.-. .|. .+++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 3699999986533210 110 4677888899999999999
Q ss_pred Ee
Q 015704 111 AA 112 (402)
Q Consensus 111 ~~ 112 (402)
..
T Consensus 277 Ei 278 (1082)
T PLN02672 277 NM 278 (1082)
T ss_pred EE
Confidence 85
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.2e-06 Score=75.91 Aligned_cols=128 Identities=15% Similarity=0.240 Sum_probs=69.5
Q ss_pred hHHhhHHHHHHHHHHH-Hhcc-cCCCCcceEEeccccchH----HHHHHhh--cCCCceEEEeccCC-CCCChhhHHhcC
Q 015704 230 FKAESKYWNEIIESYV-RALH-WKKMKLRNVLDMRAGFGG----FAAALIE--QKFDCWVMNVVPVS-GFNTLPVIYDRG 300 (402)
Q Consensus 230 ~~~~~~~w~~~~~~y~-~~~~-~~~~~~~~vLD~g~g~G~----~~~~l~~--~~~~~~~~~v~~~~-~~~~~~~~~~rg 300 (402)
|-++...|....+... ..+. ...++.-+|+.+||++|. .|..|.+ .+..-+.+.|.++| ++..++.|.. |
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-G 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-T
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-C
Confidence 4445555555555444 2222 122344459999999994 5555555 22122567888887 5566655432 3
Q ss_pred c------------------------------------ccccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHh
Q 015704 301 L------------------------------------IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEM 344 (402)
Q Consensus 301 ~------------------------------------~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~ 344 (402)
. .-..|+..+ ..+.+..||+|+|.|||-|.... .-..++.-+
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l 161 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPE-TQQRVLRRL 161 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HH-HHHHHHHHH
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHH-HHHHHHHHH
Confidence 3 011244444 12223799999999999999743 457999999
Q ss_pred hhhccCCcEEEEEeCh
Q 015704 345 DRMLRPGGHVYIRDSI 360 (402)
Q Consensus 345 ~RvLrpgG~~~~~~~~ 360 (402)
.+.|+|||++++-...
T Consensus 162 ~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGGEEEEEEEEE-TT-
T ss_pred HHHcCCCCEEEEecCc
Confidence 9999999999998654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.13 E-value=6e-06 Score=77.98 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=59.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEc----
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAA---- 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~---- 325 (402)
.|||+|||+|+.+..|++.-. ....|+++| ++.+++.+.++ |+ +..++.-...++....+||.|++.
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~--~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMK--NEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred EEEEECCCchHHHHHHHHHcC--CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 499999999999999887521 011466666 44555443332 43 333332222222222579999863
Q ss_pred --ccccccccc------CC-------HHHHHHHhhhhccCCcEEEEEe
Q 015704 326 --GLFSVESKR------CN-------MSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 --~~~~~~~~~------~~-------~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.++.+-++. .+ -..+|.+..++|||||+++.+.
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 222221110 01 1368999999999999999984
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.7e-06 Score=79.11 Aligned_cols=101 Identities=17% Similarity=0.012 Sum_probs=59.7
Q ss_pred HhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCCCc
Q 015704 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYPRT 318 (402)
Q Consensus 246 ~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~~s 318 (402)
+.+....+ .+|||+|||+|.+++.+++... ....|+.+| ++.+++.+.+ .|+ +..++.-.....+...+
T Consensus 74 ~~L~i~~g--~~VLDIG~GtG~~a~~LA~~~~--~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 74 EWVGLDKG--MRVLEIGGGTGYNAAVMSRVVG--EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HhcCCCCC--CEEEEEeCCccHHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 33444433 3599999999999999987531 001355555 4556655544 243 22333221111111268
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
||+|++...+.+ +...+.+.|||||.+++-..
T Consensus 150 fD~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 150 YDVIFVTVGVDE---------VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ccEEEECCchHH---------hHHHHHHhcCCCCEEEEEeC
Confidence 999999743332 33456789999999988643
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.7e-06 Score=82.21 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=61.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Ccc-cc--cccCCCCCCCC-C-CcccEEEE-
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLI-GV--MHDWCEPFDTY-P-RTYDLLHA- 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~-~~--~~~~~~~~~~~-~-~sfD~v~~- 324 (402)
.+|||+|||+|+.+.++++... ...|+++| ++.+++.+.++ |+- .. ........+.+ + .+||.|++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~---~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP---QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC---CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 4699999999999999987621 12566666 45555444332 441 11 11111111221 4 68999995
Q ss_pred -----cccccccccc---CC----------HHHHHHHhhhhccCCcEEEEEe
Q 015704 325 -----AGLFSVESKR---CN----------MSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 325 -----~~~~~~~~~~---~~----------~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+++.+-++. -. -..+|.+..|+|||||+++++.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 2455443320 01 1479999999999999999983
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.2e-06 Score=77.92 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+++.|||+|||+|-++...++. .|.++|.+... .-..+..+.++...+ +..+.++++.+|.++.|+|+|-..-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 5689999999999887766654 88999988643 333466666776654 4445566666667899999975432
Q ss_pred cccc-cC-hHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWT-RD-DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~-~d-~~~~l~e~~r~LkpgG~li~~ 111 (402)
.... +. ....+-.=.+.|+|||.++=+
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 2211 11 345566667899999987543
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.4e-06 Score=82.49 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=63.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCc-----ccccccCCCCCCCCC-CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGL-----IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~-----~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.++|+|||+|+...+++.-+. .++...+ +...+. .+...++ + .+++ +- ..+|+ ++||.|.+.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~----~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~-~~~~-~~-~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK----AGVVGLDNNAYEAFRANELAKKAYLDNKCNF-VVAD-FG-KMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccCcCcCchhHHHHHhcc----CCccCCCcCHHHHHHHHHHHHHHHhhhhcce-ehhh-hh-cCCCCccccCcEEEE
Confidence 589999999999999887632 2444443 221221 1111122 2 2221 11 13577 899999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+..|.++ ...++.|+.|+++|||+++..+
T Consensus 186 d~~~~~~~---~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 186 EVVCHAPD---LEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred eecccCCc---HHHHHHHHhcccCCCceEEeHH
Confidence 99999885 6899999999999999999875
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=75.75 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=50.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc-CCCcE--EE-eccccCC----CCCCCCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-GAPAM--VA-AFATRRL----PYPSQAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~-~~~~~--~~-~~d~~~l----p~~~~sfDl 77 (402)
...++||||||+|.+...++.+ .++++|+++..+..++.... .+ ++... +. +.+...+ ..+.+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~-~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIIS-ANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHH-hccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 4579999999999777666543 78999999988877764443 34 34322 21 2222221 124578999
Q ss_pred EEecCcccccc
Q 015704 78 IHCSRCRINWT 88 (402)
Q Consensus 78 I~s~~~~~~~~ 88 (402)
|+||..++.-.
T Consensus 193 ivcNPPf~~s~ 203 (321)
T PRK11727 193 TLCNPPFHASA 203 (321)
T ss_pred EEeCCCCcCcc
Confidence 99998755533
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.1e-06 Score=73.38 Aligned_cols=134 Identities=19% Similarity=0.308 Sum_probs=84.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCCh----hhHHhcCcc----cccccCCCC-------CCCCCCccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTL----PVIYDRGLI----GVMHDWCEP-------FDTYPRTYD 320 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~----~~~~~rg~~----~~~~~~~~~-------~~~~~~sfD 320 (402)
.||.||||+|..+++++..= ..+.--|.|- .+.+ ..+.+.|+- ...-|.+.+ .+.++++||
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l---P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL---PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC---CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 69999999999999999873 2235556662 2222 233444551 111111111 111347999
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC-----------h----------------hhHHHHHHHHHhc
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----------I----------------DVMDELQEIGKAM 373 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-----------~----------------~~~~~~~~~~~~~ 373 (402)
.|+|.|+++-.+. ...+.++.+..|+|+|||.+++=-+ + --++.+..++.+-
T Consensus 105 ~i~~~N~lHI~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 105 AIFCINMLHISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eeeehhHHHhcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 9999999877764 4468999999999999999998721 1 1145677777776
Q ss_pred CceEEEeecCCCCCCceEEEEEEe
Q 015704 374 GWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 374 ~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
.++.....+- | ..-++||.+|
T Consensus 184 GL~l~~~~~M--P-ANN~~Lvfrk 204 (204)
T PF06080_consen 184 GLELEEDIDM--P-ANNLLLVFRK 204 (204)
T ss_pred CCccCccccc--C-CCCeEEEEeC
Confidence 6665433221 1 2356676665
|
The function of this family is unknown. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-05 Score=81.87 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=69.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCC-CCCCCcccEEEEc--
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPF-DTYPRTYDLLHAA-- 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~-~~~~~sfD~v~~~-- 325 (402)
.+|||+|||+|+++.++++.-. ....|+++| ++++++.+.+ .|+ +..++.-...+ ..++++||+|++.
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~--~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLK--NTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 4599999999999999987510 112566666 4555544433 244 33333222222 2345799999974
Q ss_pred ----ccccccccc------CCH-------HHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHhc-CceE
Q 015704 326 ----GLFSVESKR------CNM-------STIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKAM-GWHV 377 (402)
Q Consensus 326 ----~~~~~~~~~------~~~-------~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~~-~w~~ 377 (402)
+++.|-++. .++ ..+|.+..|+|||||.++.+.- .+-...++.++++- .|+.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 222221100 011 3589999999999999997631 12234555555553 2443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.6e-06 Score=74.37 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=68.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCC--CCChhhHHhcCc--ccccccCCCC-CCCC-CC-cccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG--FNTLPVIYDRGL--IGVMHDWCEP-FDTY-PR-TYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~--~~~~~~~~~rg~--~~~~~~~~~~-~~~~-~~-sfD~v~~~~~~ 328 (402)
..+|+||||.|.|...+|+++.++-.+.|..... ...++.+.+.|+ +..+..-+.. +..+ |. |.|-|+-. |
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--F 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--C
Confidence 3599999999999999999987654445544432 455567777777 4444322222 2223 44 99988875 2
Q ss_pred c-------cccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 329 S-------VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 329 ~-------~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
. |-..|=--...|.++.|+|||||.+.+....
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 2 2121211248999999999999999997554
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.2e-06 Score=76.38 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=64.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC--CcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP--RTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~--~sfD~v~~~~~~~~~ 331 (402)
.+|||+|||+|.++..++.+.. ..+|+.+| ++.+++.+.++-- +..++. ++..++ ++||+|++.--|.|+
T Consensus 66 grVLDLGcGsGilsl~la~r~~---~~~V~gVDisp~al~~Ar~n~~~v~~v~~---D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK---PEKIVCVELNPEFARIGKRLLPEAEWITS---DVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHhCcCCEEEEC---chhhhcccCCCcEEEEcCCcccc
Confidence 3699999999999998877621 12677777 5678877766421 222222 223333 689999998878775
Q ss_pred ccc--CC---------------HHHHHHHhhhhccCCcEEEEE
Q 015704 332 SKR--CN---------------MSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 332 ~~~--~~---------------~~~~l~e~~RvLrpgG~~~~~ 357 (402)
... .+ +...+....++|+|+|.+++-
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 321 11 356778888999999988765
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.3e-05 Score=70.97 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=66.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-c-EEEeccccCCCCC---CCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-A-MVAAFATRRLPYP---SQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~-~~~~~d~~~lp~~---~~sfDlI 78 (402)
.++.+|||.|.|+|.++..|+.. .|...|+.......+..++. ..++. + .+...|+..-.|+ +..+|.|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~-~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE-RHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH-HcCCCCCceeEecceecccccccccCcccEE
Confidence 47889999999999999888753 68888888766655554433 44553 3 3556676443342 3679999
Q ss_pred EecCcccccccChHHHHHHHHHhc-CCCeEEEEEe
Q 015704 79 HCSRCRINWTRDDGILLLEVNRML-RAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~L-kpgG~li~~~ 112 (402)
+.- ++ +|..++..+.+.| ||||.+++-.
T Consensus 118 fLD-----lp-~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 118 FLD-----LP-DPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EEE-----SS-SGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred EEe-----CC-CHHHHHHHHHHHHhcCCceEEEEC
Confidence 843 23 7788999999999 8999998875
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.9e-06 Score=75.10 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=56.1
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE-EEecccc-----CCCCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATR-----RLPYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~-----~lp~~~~sfDlI~s 80 (402)
++.+|||+|||+|.++..+++. .++++|+++.++.....+ ..... +...++. ..+..-..+|++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 5678999999999999999876 699999998766442211 11111 1111222 22222246887776
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+.. ..+..+.+.|+| |.+++-
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEE
Confidence 532 348889999999 877765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-05 Score=72.09 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=60.1
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-----Cc-----cccccc-CCCCCCCCCCcccEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-----GL-----IGVMHD-WCEPFDTYPRTYDLL 322 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-----g~-----~~~~~~-~~~~~~~~~~sfD~v 322 (402)
-++||++|||.|+++..+++.+ .+.+++.+| ++++++.+.+. +. +..++. ..+-+...+++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~---~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK---SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC---CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 4479999999999999998774 122445544 34455554442 10 111111 111111124799999
Q ss_pred EEccccccccccCC--HHHHHHHhhhhccCCcEEEEEe
Q 015704 323 HAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 323 ~~~~~~~~~~~~~~--~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++........ ... -...+..+.|+|+|||.+++..
T Consensus 150 i~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 150 IVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9875422211 111 2578899999999999999863
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.1e-05 Score=79.64 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC----CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR----LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~----lp~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+..+ .+...|... +++.+++||+|+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~-~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQ-QNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHH-HHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 4579999999999999988865 7999999998876665 4444445443 455666543 223456799999764
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... -...+++.+.+ ++|++.++++..
T Consensus 371 Pr~G---~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 371 PRKG---CAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred CCCC---CCHHHHHHHHh-cCCCEEEEEcCC
Confidence 4211 12556666554 899998888853
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=71.33 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=70.1
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcE--EEe-ccc-cCCC-CCCCCeeEEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM--VAA-FAT-RRLP-YPSQAFDLIH 79 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~-~d~-~~lp-~~~~sfDlI~ 79 (402)
++++|||||++.|.-+..++.. +++++|+++.....++..++ +.+.... ... +|. +.+. ...++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 6789999999999888887754 58999999877766664443 4455442 223 231 2222 3468999999
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. -+...+.+.++..+.++|+|||.+++-.
T Consensus 138 I----DadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 I----DADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred E----eCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 4 3334456899999999999999999973
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0001 Score=64.00 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=72.6
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.+.-+||||||+|..+..|++. .+.++|+++..... ..+.|+.++......+.|... ....++.|+++.|..+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~-Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA-TLETARCNRVHIDVVRTDLLS-GLRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH-HHHHHHhcCCccceeehhHHh-hhccCCccEEEECCCc
Confidence 4667999999999888888765 37789999976643 336666555544444444221 1234899999987654
Q ss_pred cccccC--------------------hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHH
Q 015704 85 INWTRD--------------------DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 123 (402)
Q Consensus 85 ~~~~~d--------------------~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~ 123 (402)
..-.++ ..+++.++-.+|.|.|.+++.+. ..+..+|+-
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~-~~N~p~ei~ 178 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL-RANKPKEIL 178 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh-hhcCHHHHH
Confidence 432211 13567778889999999999863 333344443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.5e-05 Score=71.40 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=56.9
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCC-CCCCC----CC-Ccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWC-EPFDT----YP-RTY 319 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~-~~~~~----~~-~sf 319 (402)
+-++|||+|||+|.-+-.|+..-. ....|+.+| ++.+++.|.+ .|+ +..++.-. +.++. .+ .+|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~--~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALP--EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 345799999999986666654310 112455555 3344443332 344 33333211 11111 12 589
Q ss_pred cEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 320 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 320 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
|+|+... ++.....++.++.|.|||||.+++.
T Consensus 146 D~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999862 2234568899999999999999975
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.93 E-value=3e-05 Score=74.49 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCCCeEEEECCccchhHHHHc--cCCceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLL--PRNVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~--~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+++..|||-=||||.+..... ...++|.|++..++..+..+.. ..++... ....|+..+|+++++||.|++-...
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~-~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLE-YYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhh-hhCcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 466799999999998865443 3377888887776655543332 2233322 3334899999998899999974321
Q ss_pred ccc-----c--cC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INW-----T--RD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~-----~--~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
--- . ++ ...+|..+.++|++||+++|.++
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 110 0 11 25789999999999999999964
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.8e-05 Score=72.71 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=67.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------ccccc--cCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMH--DWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------~~~~~--~~~~~~~~~~-~sfD~v~~~ 325 (402)
..|||+|||+|+|+..|+++|+ -.|+++| +++|+........ ..++. +| +.+. .+ ..||++++|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga----~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~-~~~~-~d~~~~DvsfiS 150 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA----KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTP-ADIF-PDFATFDVSFIS 150 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC----CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCH-hHcC-CCceeeeEEEee
Confidence 3599999999999999999975 2466666 3445543222211 11221 22 1222 13 489999888
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEE-------------------eC---hhhHHHHHHHHHhcCceEEEeec
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR-------------------DS---IDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~-------------------~~---~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
. ..+|..|.+.|+| |.+++- |+ ..+++.+...+.+..|++.....
T Consensus 151 --------~---~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 151 --------L---ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred --------h---HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEE
Confidence 2 3467888888888 777655 21 13355666667778888765544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.5e-06 Score=73.77 Aligned_cols=98 Identities=12% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc---CcccccccCCCCCCCCC-CcccEEEEccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR---GLIGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r---g~~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
..+..++|+||+.|....+|...|. -.++-.| +..|++-+... ++...+....|.+.+|. +|||+|+++..
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v----ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV----EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch----hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh
Confidence 3456799999999999999999863 2344444 45566555443 55444444457778887 89999999965
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++-.. +++.-+....-.|||+|.||-+
T Consensus 147 lHW~N---dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWTN---DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhc---cCchHHHHHHHhcCCCccchhH
Confidence 54433 4578999999999999999987
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.1e-05 Score=66.51 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=59.8
Q ss_pred CCCeEEEECCccchhHHHHc--c-CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLL--P-RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~--~-~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.+++|+|+|||||.++...+ . ..|+++|+++..+..+. +.+.+......+...|+.+.. ..||.++.|..+--
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 56789999999997764433 3 48999999997775544 555554445667777777654 67899998876555
Q ss_pred cccCh-HHHHHHHHHhc
Q 015704 87 WTRDD-GILLLEVNRML 102 (402)
Q Consensus 87 ~~~d~-~~~l~e~~r~L 102 (402)
+.... ..++....+.-
T Consensus 121 ~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 121 QRRHADRPFLLKALEIS 137 (198)
T ss_pred ccccCCHHHHHHHHHhh
Confidence 54332 34555555553
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.4e-05 Score=76.50 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC-CCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP-YPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..++.. .++++|+++..+..+. +.++..+.. ..+...|+.... ...++||+|+++...-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 4579999999999999888865 7999999998776555 445555553 345666654422 1124699999876532
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. -...++..+. .++|++.++++..
T Consensus 312 G---~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 G---IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred C---CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 1 1245555554 4799999999964
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.9e-05 Score=80.28 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=70.1
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-------------cccccccCCCC-CCCCCCc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-------------LIGVMHDWCEP-FDTYPRT 318 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-------------~~~~~~~~~~~-~~~~~~s 318 (402)
+-++|||+|||.|..+..+++++ ++ ..|+.+| ++++++.+.+.- -+..++.-... +...+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v--~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DV--EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-Cc--CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 45679999999999999998774 12 2455555 455666666521 12222221111 1223479
Q ss_pred ccEEEEccccccccc--cCCHHHHHHHhhhhccCCcEEEEEeC-----hhhHHHHHHHHHhcCc
Q 015704 319 YDLLHAAGLFSVESK--RCNMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGW 375 (402)
Q Consensus 319 fD~v~~~~~~~~~~~--~~~~~~~l~e~~RvLrpgG~~~~~~~-----~~~~~~~~~~~~~~~w 375 (402)
||+|++.-.....+. .---+..+.++.|.|||||.+++... .+....+.+.+++...
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 999999732211110 00013678899999999999999532 2334455555666545
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=73.67 Aligned_cols=115 Identities=21% Similarity=0.320 Sum_probs=72.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccc-cCCCCCCC--CC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMH-DWCEPFDT--YP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~-~~~~~~~~--~~-~sfD~v~~ 324 (402)
..|||+|||+|.++..|++.+. .|+++| ++.+++.+.+. |+ +..+. +..+.+.. ++ ++||+|++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~-----~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA-----EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 3599999999999999998865 566666 45666655443 33 22322 22222222 44 68999988
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeec
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
. +++......+..+.+ ++|++.+++|=+...+.+--..+.+-.|++...+-
T Consensus 374 d------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~~i~~ 424 (443)
T PRK13168 374 D------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEAGYRLKRAGM 424 (443)
T ss_pred C------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhCCcEEEEEEE
Confidence 7 334445666766666 69999999995554444333344344588776543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=61.26 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=64.5
Q ss_pred EEEECCccchh--HHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC--CCCCC-CCeeEEEecCccc
Q 015704 14 VMDAGCGVASF--GAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR--LPYPS-QAFDLIHCSRCRI 85 (402)
Q Consensus 14 VLDiGcG~G~~--~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~--lp~~~-~sfDlI~s~~~~~ 85 (402)
++|+|||+|.. ...+... .++++|++..++......... .... ..+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 3444332 567778887666542211111 2211 2344445443 77776 489999 565656
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++.. ....+.++.+.|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6654 78999999999999999999864
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.3e-05 Score=75.36 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=59.5
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc------Cc----ccccccCC-CCCCCCC-CcccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------GL----IGVMHDWC-EPFDTYP-RTYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r------g~----~~~~~~~~-~~~~~~~-~sfD~ 321 (402)
..++||++|||.|+.+..+++.. ++..+.++.+| +.+++.+.+. ++ +..++.-+ +-+...+ +.||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD-~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHS-SVEQIDICEID-KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECC-HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45679999999999999999874 33333343433 3344444332 11 22222211 1112234 68999
Q ss_pred EEEccccccccccC-CHHHHHHHhhhhccCCcEEEEE
Q 015704 322 LHAAGLFSVESKRC-NMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 322 v~~~~~~~~~~~~~-~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
|++...-.+..... --...+..+.|.|+|||.++..
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99863222211100 0136789999999999999874
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=2e-05 Score=74.81 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=38.0
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
..||+|+|.|||.|..+ .....++..+.+.|+|||++++-.+.
T Consensus 222 ~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 222 GPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 79999999999999974 35689999999999999999987654
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.5e-05 Score=69.76 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=66.5
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-----CCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-----YPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp-----~~~~sfD 76 (402)
++++||||||++|..+..++.. .++.+|+++.....+. +..++.+.. ..+..++..+ ++ .+.++||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 5789999999999888888753 7899999886665444 444444543 2344444321 22 1135899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+|+.-. ...+....+..+.++|+|||.+++-
T Consensus 124 ~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 124 FVFIDA----DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEES----TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcc----cccchhhHHHHHhhhccCCeEEEEc
Confidence 999532 2334578899999999999999997
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.5e-05 Score=76.08 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=71.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCC-CCC--CC-CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEP-FDT--YP-RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~-~~~--~~-~sfD~v~~~ 325 (402)
.|||+|||+|.++..|++... .|+++| ++.+++.+.+ .|+ +..++...+. ++. ++ .+||+|++.
T Consensus 295 ~vLDl~cG~G~~sl~la~~~~-----~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQAK-----SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred EEEEcCCCcCHHHHHHHHhCC-----EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 599999999999999998865 455555 3455554443 243 3334332222 222 22 589999976
Q ss_pred cccccccccCC-HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEee
Q 015704 326 GLFSVESKRCN-MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 326 ~~~~~~~~~~~-~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
+++.+ ...++.++.+ |+|+|.++++-+.....+.-..+.+-.|++....
T Consensus 370 ------PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 370 ------PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITWVQ 419 (431)
T ss_pred ------cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEEE
Confidence 22323 3566676665 8999999999666555555555555567765543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.5e-05 Score=71.40 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=67.1
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCC-C----CCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLP-Y----PSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~-~~lp-~----~~~sfD 76 (402)
++++|||+|+++|..+..++.. .++++|.++.....+. +..++.+.. ..+..+++ +.++ + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar-~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK-RYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 5689999999999988877753 5889999987665554 333445554 23444443 2222 1 136899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+|+.-. ...+...++..+.++|+|||.+++-
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999532 2334578899999999999999886
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.1e-05 Score=74.84 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=69.5
Q ss_pred CCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccccccC
Q 015704 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 90 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d 90 (402)
+..++|+|||.|-.+..-....+++.|++..- ...++..+.. .....|+..+|+.+.+||.+++..+.+|+...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l-----~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGL-----LGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchhhhh-----ccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 66899999999965432222245666665432 2444444432 45566889999999999999998888887754
Q ss_pred h--HHHHHHHHHhcCCCeEEEEEeC
Q 015704 91 D--GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 91 ~--~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. ..+++++.|+|+|||...+...
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEe
Confidence 3 6799999999999999777643
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.6e-05 Score=70.28 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC---CcEEEeccccCC--CCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA---PAMVAAFATRRL--PYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~---~~~~~~~d~~~l--p~~~~sfDlI~s 80 (402)
+.+.+|||.+.|-|+.+...+++ .|+.++.++.-+.-+.++- -.+++ ...+..+|+.++ .|++++||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEee
Confidence 35789999999999999887776 6777888776553332110 00111 123444554332 377899999996
Q ss_pred cCcccccccCh--HHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~--~~~l~e~~r~LkpgG~li~~~ 112 (402)
-..-+.....+ ..+.+|++|+|||||.++-.+
T Consensus 212 DPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 212 DPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 44433333332 678999999999999998774
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00023 Score=66.63 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=89.1
Q ss_pred CCCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccC---CCCCCCCeeE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRR---LPYPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~---lp~~~~sfDl 77 (402)
+.+-+||||.||.|+...-.... .+.-.|.++..+.... +..+++++..+ +...|+.+ +.--+...++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 35669999999999765433322 5667788887775554 66667777653 55555322 2212345689
Q ss_pred EEecCcccccccCh--HHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCC
Q 015704 78 IHCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTN 155 (402)
Q Consensus 78 I~s~~~~~~~~~d~--~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (402)
++.+..+..+.++. ...+..+.+.+.|||+++.+..|-...+.-+......- .....|-.. .++..
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsH---r~g~~WvMR---------rRsq~ 280 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSH---RDGKAWVMR---------RRSQA 280 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcc---cCCCceEEE---------ecCHH
Confidence 98887766665432 56799999999999999999765433333222221110 011234332 23334
Q ss_pred hhhhhhhhcCCC
Q 015704 156 NSCYLNREAGTI 167 (402)
Q Consensus 156 ~~~~~l~~aGf~ 167 (402)
++-.+...|||.
T Consensus 281 EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 281 EMDQLVEAAGFE 292 (311)
T ss_pred HHHHHHHHcCCc
Confidence 455578889995
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.4e-05 Score=72.43 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=70.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCC-CCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~-~~~sfD~v~~~~~ 327 (402)
..|||+|||+|.|+..|++++. .|+++| ++.+++.+.+ .|+ +..+..-.+.+.. .+..||+|++.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~-----~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d-- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM-----QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN-- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC--
Confidence 4699999999999999999876 566666 4556654433 344 2233222222221 22579999988
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeChhhH-HHHHHHHHhcCceEEEee
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVM-DELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~ 381 (402)
+++......+.++..-++|++.++++-+.... +.++.+ -.|++..-.
T Consensus 248 ----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 248 ----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred ----CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEE
Confidence 44555555555666668999999999655443 333333 257766543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.8e-05 Score=63.87 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=69.3
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-----CCCCCeeEEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-----YPSQAFDLIH 79 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp-----~~~~sfDlI~ 79 (402)
++.-|||+|.|||-++..++++ .+++++.++. ......+......+..+|+..+. +++..||.|+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d-----F~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD-----FVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH-----HHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEE
Confidence 4568999999999999999887 4566666653 22333333333335555544443 4567899999
Q ss_pred ecCcccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
|...++.++... .+.++++...|.+||.++--+
T Consensus 123 S~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 123 SGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 987777766543 578999999999999988764
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.6e-05 Score=73.57 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=69.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcc---c
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAG---L 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~---~ 327 (402)
+.|||+|||+|.++..-|+.|+ ..|..|...+. .-..+++...|+ |.++...-|.+ ..| ...|+|.+-- .
T Consensus 62 K~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhhhHH
Confidence 3499999999999999999986 56666666552 333466667776 66677666776 577 8999999841 1
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+.| ...+..+|.-=+|.|+|||.++=+
T Consensus 140 Ll~---EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 140 LLY---ESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHH---hhhhhhhhhhhhhccCCCceEccc
Confidence 111 113457788888999999987644
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=66.16 Aligned_cols=132 Identities=22% Similarity=0.298 Sum_probs=83.7
Q ss_pred ceEEeccccchHHHHHHhhcCC-CceEEEeccCCCCCChhhHH----hcCc----ccccc-cCCCCCCCCC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKF-DCWVMNVVPVSGFNTLPVIY----DRGL----IGVMH-DWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~~~----~rg~----~~~~~-~~~~~~~~~~-~sfD~v~~ 324 (402)
.+|||.=.|.|.+|..-+++|+ .|..+.+.| +.++.|. .|++ +..++ +..+.+.+|+ .|||+|+-
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp----~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITVEKDP----NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEEeeCC----CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 3599999999999999999998 333333333 2232221 2232 23333 3345567788 79997754
Q ss_pred c-cccccccccCCHHHHHHHhhhhccCCcEEEEEeC--------hhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEE
Q 015704 325 A-GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS--------IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTA 395 (402)
Q Consensus 325 ~-~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~--------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~ 395 (402)
. -=|++....- -+..-.|+.|||||||.++==.. .+....+.+.+.+..+.+.....+.. -++|
T Consensus 212 DPPRfS~AgeLY-seefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~------gv~A 284 (287)
T COG2521 212 DPPRFSLAGELY-SEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREAL------GVVA 284 (287)
T ss_pred CCCccchhhhHh-HHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhcc------ceEE
Confidence 2 2233322100 15788999999999999875432 25678888889999998776665432 2566
Q ss_pred Eec
Q 015704 396 DKR 398 (402)
Q Consensus 396 ~k~ 398 (402)
+|+
T Consensus 285 ~k~ 287 (287)
T COG2521 285 VKP 287 (287)
T ss_pred ecC
Confidence 663
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=5e-05 Score=71.47 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=50.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.... .. .....+..+|...++++ .||.|++|..
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~-~~-~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDE-IA-AGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHh-cc-CCCEEEEEeccccCCch--hceEEEEcCC
Confidence 5679999999999999999876 7899999987665443222 11 12344666777777665 4899998865
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.6e-05 Score=65.89 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=56.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
.|||+|||+|.++..|++++. .|+++| ++.+++.+.++- -+..++.-...++ ++ .+||.|++.--+ |
T Consensus 16 ~vLEiG~G~G~lt~~l~~~~~-----~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py-~ 88 (169)
T smart00650 16 TVLEIGPGKGALTEELLERAA-----RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPY-N 88 (169)
T ss_pred EEEEECCCccHHHHHHHhcCC-----eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCc-c
Confidence 599999999999999999865 555555 345665554441 1334444333322 44 469999886333 2
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.. ...+..++.+. .+.++|++++...
T Consensus 89 ~~-~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 89 IS-TPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred cH-HHHHHHHHhcC--CCcceEEEEEEHH
Confidence 22 11233333322 2569999999853
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.1e-05 Score=71.22 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=66.4
Q ss_pred CCCeEEEECCccc----hhHHHHccC---------CceEEeCCccchHHHHHH----HHHHcCC-------------C--
Q 015704 10 LLRVVMDAGCGVA----SFGAYLLPR---------NVITMSIAPKDVHENQIQ----FALERGA-------------P-- 57 (402)
Q Consensus 10 ~~~~VLDiGcG~G----~~~~~L~~~---------~v~~vdi~~~~~~~a~~~----~a~~~~~-------------~-- 57 (402)
.+-+|+-+||+|| +++..|.+. +|.|+|++...+..|..- ....+++ .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3669999999999 333333321 678888887766555431 0110111 0
Q ss_pred ----------cEEEeccccCCCCCCCCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 58 ----------AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 58 ----------~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+...+...-++..+.||+|+|-+++.++.... .++++.++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 0122223222222446799999999988887553 689999999999999999984
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.2e-05 Score=72.56 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=51.1
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++++ .++++|+++.++..+..... .....+..+|+..+++++-.+|.|++|..
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 35679999999999999988876 78999999877655432211 12345667787777765433588988754
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.9e-05 Score=75.32 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=61.2
Q ss_pred CCeEEEECCccchhHHHHcc--------CCceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEe
Q 015704 11 LRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~--------~~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
...|||+|||+|.+....++ ..|.+++-++......+ +..+..+. ...+...|++....+ .++|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 56899999999987654432 27899998875543322 33234443 345777888888766 48999997
Q ss_pred cCcccccccC--hHHHHHHHHHhcCCCeEEE
Q 015704 81 SRCRINWTRD--DGILLLEVNRMLRAGGYFA 109 (402)
Q Consensus 81 ~~~~~~~~~d--~~~~l~e~~r~LkpgG~li 109 (402)
-.+ -.+..+ ....|....|.|||||.++
T Consensus 265 ElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 433 333322 2567888899999999865
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.9e-05 Score=74.49 Aligned_cols=124 Identities=16% Similarity=0.279 Sum_probs=67.5
Q ss_pred HHhhHHHH--HHHHHHHHhcccCCCCcceEEeccccchH-HHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC------
Q 015704 231 KAESKYWN--EIIESYVRALHWKKMKLRNVLDMRAGFGG-FAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG------ 300 (402)
Q Consensus 231 ~~~~~~w~--~~~~~y~~~~~~~~~~~~~vLD~g~g~G~-~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg------ 300 (402)
.+.-..|- .+|..|........ .-..|||+|||-|| ..-+...+- -.++++| +...++.|.+|=
T Consensus 38 lR~fNNwvKs~LI~~~~~~~~~~~-~~~~VLDl~CGkGGDL~Kw~~~~i-----~~~vg~Dis~~si~ea~~Ry~~~~~~ 111 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQKYAKKVKQNR-PGLTVLDLCCGKGGDLQKWQKAKI-----KHYVGIDISEESIEEARERYKQLKKR 111 (331)
T ss_dssp HHHHHHHHHHHHHHHHCHCCCCTT-TT-EEEEET-TTTTTHHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHHTS
T ss_pred HHHHhHHHHHHHHHHHHHhhhccC-CCCeEEEecCCCchhHHHHHhcCC-----CEEEEEeCCHHHHHHHHHHHHHhccc
Confidence 33444464 33446654332221 44569999999998 444444332 2455555 344455454442
Q ss_pred ---------c-ccccccCC--CCCC-CCC---CcccEEEEccccccc-cccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 301 ---------L-IGVMHDWC--EPFD-TYP---RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 301 ---------~-~~~~~~~~--~~~~-~~~---~sfD~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
. ...++.-| +.+. .++ ..||+|=|.-.|+|. .........|.-+...|||||+||.+-+.
T Consensus 112 ~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 112 NNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 1 11122111 1111 133 499999999888884 22333457999999999999999999655
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.9e-05 Score=69.99 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=76.7
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhH----HhcCc---ccccccC-CCCCCCC-----CCc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVI----YDRGL---IGVMHDW-CEPFDTY-----PRT 318 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~----~~rg~---~~~~~~~-~~~~~~~-----~~s 318 (402)
+.++||++|+++|..+.+|+.. +.+. .|+.+| .+...+.| .+.|+ +..++.- .+.++.+ +.+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G---~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESG---CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 4567999999999999998863 1111 244444 23333333 33455 3333221 1112222 258
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC------------hhhHHHHHHHHH----hcCceEEEeec
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------IDVMDELQEIGK----AMGWHVTLRET 382 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~------------~~~~~~~~~~~~----~~~w~~~~~~~ 382 (402)
||+|+... ++.+...++....+.|||||.+++.+- ......|+++.+ .=++...+--.
T Consensus 195 FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 195 YDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred CCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 99999882 244567899999999999999998731 111224555444 44566666544
Q ss_pred CCCCCCceEEEEEEec
Q 015704 383 AEGPHASYRILTADKR 398 (402)
Q Consensus 383 ~~~~~~~~~~l~~~k~ 398 (402)
.+ .+++++|.
T Consensus 269 gD------Gl~i~~K~ 278 (278)
T PLN02476 269 GD------GMTICRKR 278 (278)
T ss_pred CC------eeEEEEEC
Confidence 33 37777773
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.3e-05 Score=70.44 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=44.5
Q ss_pred CC-CcccEEEEccccccc-cccCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEE
Q 015704 315 YP-RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 315 ~~-~sfD~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~ 378 (402)
++ .+||+|-|.-+|+|. ..-....-+|+-+.+.|||||+||=|-++ .++.+++.. ...+|--.
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gNd 258 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGND 258 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhcce
Confidence 45 459999998777763 22223357899999999999999999554 566777766 33455433
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=68.53 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHH--HHHHHcC--------------------C-----C--
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQI--QFALERG--------------------A-----P-- 57 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~--~~a~~~~--------------------~-----~-- 57 (402)
+...+||--|||.|+++-.++.+ .+.+.|+|..|+-.... ....+.+ + +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 34579999999999999999987 67778888777533221 1100000 0 0
Q ss_pred -----------cEEEeccccCCCCCC---CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHH--
Q 015704 58 -----------AMVAAFATRRLPYPS---QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA-- 121 (402)
Q Consensus 58 -----------~~~~~~d~~~lp~~~---~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~e-- 121 (402)
.....+|...+..++ ++||.|++. .++.-..+.-..+..+.++|||||+.|=..|..++....
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~ 213 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSI 213 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCC
Confidence 001112222222223 689999865 345555567889999999999999887776544544432
Q ss_pred -----HHHHHHHHHhhhhhcceeeeecc
Q 015704 122 -----QEEHWKEMLDLTTRLCWELVKKE 144 (402)
Q Consensus 122 -----l~~~~~~~~~~~~~~~~~~~~~~ 144 (402)
+.-.|.++..+.+..+|+.+.+.
T Consensus 214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 214 PNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 45567888888888888877633
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0001 Score=61.62 Aligned_cols=94 Identities=24% Similarity=0.307 Sum_probs=55.8
Q ss_pred EEeccccchHH--HHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c--ccccccCCCC-CCCCCC--cccEEEEc
Q 015704 258 VLDMRAGFGGF--AAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L--IGVMHDWCEP-FDTYPR--TYDLLHAA 325 (402)
Q Consensus 258 vLD~g~g~G~~--~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~--~~~~~~~~~~-~~~~~~--sfD~v~~~ 325 (402)
+||+|||.|.. ...+...++ .++++| +..++..+..+. . +..+...... ..+++. +||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGA-----YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCc-----eEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 99999999984 444443322 233343 333333322222 1 1222221111 234443 89999 66
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
....|..+ +...+.++.|+|+|+|.+++.+..
T Consensus 126 ~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 55555443 689999999999999999999754
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0001 Score=67.58 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=58.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCC--CCcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTY--PRTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~--~~sfD~v~~~~~~~~~ 331 (402)
.+|||+|||+|.++..++.+.......+|+++| .+.+++.+...-. +..++ .++..+ +.+||+|+|.==+.-+
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~---~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWIN---ADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEE---cchhcccccCCccEEEECCCCCCc
Confidence 369999999999999988642100123677776 5667776664321 22232 222223 3699999996333211
Q ss_pred c-----c---cCC-HHHHHHHhhhhccCCcEEEEE
Q 015704 332 S-----K---RCN-MSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 332 ~-----~---~~~-~~~~l~e~~RvLrpgG~~~~~ 357 (402)
. . ... ...++....|+++||+. |+=
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP 161 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP 161 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence 1 0 111 33578888898888886 543
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=67.77 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=49.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCee---EEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFD---LIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfD---lI~s~~~~ 84 (402)
++.+|||+|||+|.++..++++ .++++|+++.++..+.... .. .....+...|+..++++ +|| +|+++..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~-~~-~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP- 103 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLL-SL-YERLEVIEGDALKVDLP--DFPKQLKVVSNLP- 103 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHh-Cc-CCcEEEEECchhcCChh--HcCCcceEEEcCC-
Confidence 5679999999999999999876 7899999886664433211 11 12334566677777654 566 8887644
Q ss_pred ccc
Q 015704 85 INW 87 (402)
Q Consensus 85 ~~~ 87 (402)
+++
T Consensus 104 y~i 106 (253)
T TIGR00755 104 YNI 106 (253)
T ss_pred hhh
Confidence 443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=61.42 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=46.0
Q ss_pred ceEEeccccchH-HHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC--CcccEEEEc
Q 015704 256 RNVLDMRAGFGG-FAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP--RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~-~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~--~sfD~v~~~ 325 (402)
..|||+|||+|. ++..|++.|. +|+++| ++..++.+.++++-...-|..+ +++. ..+|+|.+.
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~-----~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysi 84 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF-----DVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSI 84 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC-----EEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEe
Confidence 569999999996 9999999998 566666 4556777888887444444443 2233 689999988
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00041 Score=70.53 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=68.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCC-CCCCCeeEEE--
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP-YPSQAFDLIH-- 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp-~~~~sfDlI~-- 79 (402)
.++.+|||++||.|.=+.++++. .+++.|++..-+.... +...+.+..+. +...|...++ ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 57789999999999766666543 6889999886554333 44455566553 4445554442 2236799999
Q ss_pred --ecCcc---------cccccC--------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 --CSRCR---------INWTRD--------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 --s~~~~---------~~~~~d--------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+..- ..|..+ ...+|..+.+.|||||.++.+|
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 44221 112111 1367888999999999999997
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00025 Score=69.04 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=63.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc----CCCcEEEecccc-CCCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFATR-RLPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~~d~~-~lp~~~~sfDlI~ 79 (402)
..+++||.+|+|.|..+..+++. .++.+|+++..+..+...+.... .....+...|.. -+....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999998877764 57888888765543332211110 112224444422 2233457899999
Q ss_pred ecCcccccccC------hHHHHH-HHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD------DGILLL-EVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d------~~~~l~-e~~r~LkpgG~li~~~ 112 (402)
+- +.-.+... -..+++ .+.+.|+|||.+++..
T Consensus 182 ~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 64 22222111 146777 8999999999998763
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.4e-05 Score=74.20 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=74.9
Q ss_pred CCCCeEEEECCccchhHHHHcc---CCceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~---~~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++..++|+|||.|....+... .++++++.++..+........ ...+. ..+...+.-..|++++.||.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~-~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK-KAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH-HHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 3455899999999987766654 377777777665544442222 22221 22466678888999999999999887
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..|.. ++..+++|++|+++|||+++...
T Consensus 188 ~~~~~-~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 188 VCHAP-DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred cccCC-cHHHHHHHHhcccCCCceEEeHH
Confidence 55544 89999999999999999998873
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00068 Score=63.55 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHH---HHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQI---QFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~---~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++++||=+|.|.|..++.+++. +|+-+|+++..+..+.. ..+.....+..-...... .-..++||+|+.-..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~--~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL--DLDIKKYDLIICLQE 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhh--hccCCcCCEEEEcCC
Confidence 46789999999999999999886 68888888755533321 011101111111111111 112368999996432
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....+.+.+++.|+|||.++..+
T Consensus 149 ------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 ------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred ------CChHHHHHHHHhcCCCcEEEECC
Confidence 34678899999999999999974
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=2e-05 Score=73.22 Aligned_cols=92 Identities=20% Similarity=0.183 Sum_probs=59.1
Q ss_pred EEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccccC
Q 015704 258 VLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRC 335 (402)
Q Consensus 258 vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~ 335 (402)
+||+|||.|-. +... .-..+.+.| ...-+..+...|-....-..+.. .+++ .+||.+.+..|++|+..++
T Consensus 49 ~~d~gCGngky---~~~~----p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~-~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 49 GLDVGCGNGKY---LGVN----PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALK-LPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred eeecccCCccc---CcCC----CcceeeecchhhhhccccccCCCceeehhhhhc-CCCCCCccccchhhhhhhhhhhHH
Confidence 99999999932 2111 111233333 23333344333331111111222 3355 7999999999999999888
Q ss_pred CHHHHHHHhhhhccCCcEEEEE
Q 015704 336 NMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 336 ~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.-..+|.|+.|+|||||...+.
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEE
Confidence 8899999999999999996665
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0003 Score=66.65 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=63.8
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC--------C-cEEEeccc-cCCCCCCCCe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--------P-AMVAAFAT-RRLPYPSQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~--------~-~~~~~~d~-~~lp~~~~sf 75 (402)
++++||-||-|.|..++.+.+. +++.+|+++.-+ +.+++... + ..+...|. +-+.-..++|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-----~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~f 150 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-----ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKF 150 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-----HHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcC
Confidence 3469999999999999999876 678888876544 44444311 1 12333332 2222223489
Q ss_pred eEEEecCcccccccC----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 76 DLIHCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 76 DlI~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|++-.. -...+. -..+++.+++.|+++|+++..+.
T Consensus 151 DvIi~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 151 DVIIVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred CEEEEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 99996432 221110 16899999999999999999853
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00054 Score=60.89 Aligned_cols=110 Identities=22% Similarity=0.168 Sum_probs=67.2
Q ss_pred ccCCCCCeEEEECCccchhHHHH----ccCCceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEe
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYL----LPRNVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L----~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDlI~s 80 (402)
.+.....+++|+|+|.|.-+..| .+.+++-+|....-.. .....+++-++.+. +....++. +....+||+|++
T Consensus 44 ~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a 121 (184)
T PF02527_consen 44 FLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA 121 (184)
T ss_dssp CS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE
T ss_pred hhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe
Confidence 33344448999999999443333 3347788887764321 11233445567644 55555666 555689999997
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHH
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 124 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~ 124 (402)
-.+ .+...++.-+.+.+++||.+++-- +.....|+.+
T Consensus 122 RAv-----~~l~~l~~~~~~~l~~~G~~l~~K--G~~~~~El~~ 158 (184)
T PF02527_consen 122 RAV-----APLDKLLELARPLLKPGGRLLAYK--GPDAEEELEE 158 (184)
T ss_dssp ESS-----SSHHHHHHHHGGGEEEEEEEEEEE--SS--HHHHHT
T ss_pred ehh-----cCHHHHHHHHHHhcCCCCEEEEEc--CCChHHHHHH
Confidence 543 256788999999999999998874 3444444443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00057 Score=61.16 Aligned_cols=100 Identities=14% Similarity=-0.045 Sum_probs=63.4
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-C-C-CCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-Y-P-SQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp-~-~-~~sfDlI~s 80 (402)
.+.+|||++||+|.++..++.+ .++++|.++..+.... +.+...+.. ..+...|+.. +. + . ...||+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4679999999999999988876 6889999987665444 333334443 2355555422 22 1 1 224788886
Q ss_pred cCcccccccChHHHHHHHH--HhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVN--RMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~--r~LkpgG~li~~~ 112 (402)
... +.. ......+..+. .+|+++|.+++..
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 544 221 12345555443 4799999998885
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00039 Score=69.02 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=68.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-CCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~~~sfD~v~~~~~ 327 (402)
++|||++||+|.|+..++.++. .|+++| ++.+++.+.+. |+ +..+....+.+.. ...+||+|++.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~-----~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D-- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT-----QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN-- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC-----eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC--
Confidence 4699999999999999998876 455555 34455444332 33 2223222122111 11469999998
Q ss_pred cccccccCCH-HHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeec
Q 015704 328 FSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 328 ~~~~~~~~~~-~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+++... ..++..+ .-++|++.++++-+.....+--..+ -.|++...+-
T Consensus 308 ----PPr~G~~~~~l~~l-~~~~p~~ivyvsc~p~TlaRDl~~L--~gy~l~~~~~ 356 (374)
T TIGR02085 308 ----PPRRGIGKELCDYL-SQMAPKFILYSSCNAQTMAKDIAEL--SGYQIERVQL 356 (374)
T ss_pred ----CCCCCCcHHHHHHH-HhcCCCeEEEEEeCHHHHHHHHHHh--cCceEEEEEE
Confidence 444443 3444444 4589999999997765544444444 3588776543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.6e-05 Score=67.94 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=77.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH-hcCccccc--------------ccCCCCCCCCC---
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY-DRGLIGVM--------------HDWCEPFDTYP--- 316 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~-~rg~~~~~--------------~~~~~~~~~~~--- 316 (402)
.+||+-|||.|.-+..|+++|+ +|+++| ++..++.++ ++++-... .-++.+|-.++
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~-----~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH-----DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE-----EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CeEEEeCCCChHHHHHHHHCCC-----eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 4599999999999999999998 566666 444555543 34431110 11122333332
Q ss_pred -CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEE-E-e--------Ch--hhHHHHHHHHHhcCceEEEee
Q 015704 317 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI-R-D--------SI--DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 317 -~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~-~-~--------~~--~~~~~~~~~~~~~~w~~~~~~ 381 (402)
..||+|+=...|.-++ ...-.....-|.++|||||.+++ + + +. -..+.+++++. -.|++..-.
T Consensus 114 ~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred cCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 3699999999998887 45678999999999999999433 3 1 11 12566777766 788876643
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00014 Score=69.53 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||||||+|.++..+++. .++++|+++.++..+........ .....+...|+...++ ..||.|++|.. ++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--~~~d~VvaNlP-Y~ 112 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--PYFDVCVANVP-YQ 112 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--cccCEEEecCC-cc
Confidence 5679999999999999988865 79999999877765543333211 1233466667655544 36899998754 55
Q ss_pred cc
Q 015704 87 WT 88 (402)
Q Consensus 87 ~~ 88 (402)
+.
T Consensus 113 Is 114 (294)
T PTZ00338 113 IS 114 (294)
T ss_pred cC
Confidence 44
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00013 Score=73.78 Aligned_cols=129 Identities=21% Similarity=0.246 Sum_probs=70.1
Q ss_pred hhhhHHhhHHHHHHHHHHHHhcc--cCCC----CcceEEeccccchHHHHHHhhcCCC-ceEEEeccCCC-CCChh----
Q 015704 227 KELFKAESKYWNEIIESYVRALH--WKKM----KLRNVLDMRAGFGGFAAALIEQKFD-CWVMNVVPVSG-FNTLP---- 294 (402)
Q Consensus 227 ~~~~~~~~~~w~~~~~~y~~~~~--~~~~----~~~~vLD~g~g~G~~~~~l~~~~~~-~~~~~v~~~~~-~~~~~---- 294 (402)
.+.|+.|.-+...+-+.-.+.+. .... +-..|||+|||.|......++.++. .....|.+++. +++..
T Consensus 153 Ye~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~ 232 (448)
T PF05185_consen 153 YEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQK 232 (448)
T ss_dssp HHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHH
T ss_pred HhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHH
Confidence 37787777766544442222221 1111 2356999999999987554433210 02234555542 22221
Q ss_pred hHHhcCc---ccccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 295 VIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 295 ~~~~rg~---~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.+...|. |..++...+.+. .|.-.|+|++--.=+.+ +.+.+...|.-.+|.|||||.+|=+
T Consensus 233 ~v~~n~w~~~V~vi~~d~r~v~-lpekvDIIVSElLGsfg-~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 233 RVNANGWGDKVTVIHGDMREVE-LPEKVDIIVSELLGSFG-DNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp HHHHTTTTTTEEEEES-TTTSC-HSS-EEEEEE---BTTB-TTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred HHHhcCCCCeEEEEeCcccCCC-CCCceeEEEEeccCCcc-ccccCHHHHHHHHhhcCCCCEEeCc
Confidence 2233343 788887665543 36899999985322222 3445677899999999999988743
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0004 Score=63.84 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=68.3
Q ss_pred cccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cccccc----ccCCCCCCCCCC
Q 015704 248 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVM----HDWCEPFDTYPR 317 (402)
Q Consensus 248 ~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~----~~~~~~~~~~~~ 317 (402)
.++..|. .|||+|.|+|.++++|+.. |. ...|+..+ -+...+.|.+. |+...+ -|.++. .+++
T Consensus 90 ~gi~pg~--rVlEAGtGSG~lt~~La~~vg~---~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~--~~~~ 162 (256)
T COG2519 90 LGISPGS--RVLEAGTGSGALTAYLARAVGP---EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG--IDEE 162 (256)
T ss_pred cCCCCCC--EEEEcccCchHHHHHHHHhhCC---CceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc--cccc
Confidence 3455443 3999999999999999942 21 11344443 23333333322 442211 122221 1347
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCc
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGW 375 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w 375 (402)
.||.|+.. -.+|-.+|..++.+|||||.+++=.+. ++.++.-+.++..+|
T Consensus 163 ~vDav~LD--------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 163 DVDAVFLD--------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ccCEEEEc--------CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 99999988 557889999999999999999997664 333333333344455
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00016 Score=72.15 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=67.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc----cccccc-CCCCCCCC---CCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL----IGVMHD-WCEPFDTY---PRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~----~~~~~~-~~~~~~~~---~~sfD~v 322 (402)
++|||+|||+|+|+.+.+..|+ ..|+.+| ++.+++.+.+ .|+ +..++. ..+.+..+ ..+||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga----~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC----SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 4699999999999988766654 1455555 3455544332 233 112221 11111112 2489999
Q ss_pred EEcccccccccc-------CCHHHHHHHhhhhccCCcEEEEEeC------hhhHHHHHHHHHhcCceEEEe
Q 015704 323 HAAGLFSVESKR-------CNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 323 ~~~~~~~~~~~~-------~~~~~~l~e~~RvLrpgG~~~~~~~------~~~~~~~~~~~~~~~w~~~~~ 380 (402)
++.-=.- ...+ .+...++.-..++|||||.+++... .+..+.+.+.+..-..++.+.
T Consensus 298 ilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l 367 (396)
T PRK15128 298 VMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_pred EECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 9872110 0001 1234556667899999999997532 234555555555555555443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0002 Score=64.32 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=59.5
Q ss_pred CeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC---CCCCeeEEEecCccccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY---PSQAFDLIHCSRCRINW 87 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~---~~~sfDlI~s~~~~~~~ 87 (402)
-++|||||=+......-... .|+.+|+.+... .+...|.-..|. +.++||+|.++.+ +.+
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~---------------~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP---------------GILQQDFMERPLPKNESEKFDVISLSLV-LNF 116 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCC---------------CceeeccccCCCCCCcccceeEEEEEEE-Eee
Confidence 58999998866433222221 577888776321 133345445554 3678999999866 777
Q ss_pred ccCh---HHHHHHHHHhcCCCeE-----EEEEeC
Q 015704 88 TRDD---GILLLEVNRMLRAGGY-----FAWAAQ 113 (402)
Q Consensus 88 ~~d~---~~~l~e~~r~LkpgG~-----li~~~~ 113 (402)
.+++ ...++.+.+.|+|+|. |++..|
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC
Confidence 7676 4789999999999999 888864
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00026 Score=62.84 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=64.1
Q ss_pred CCCeEEEECCccchhHHHHcc--C--C---------ceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLP--R--N---------VITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQA 74 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~--~--~---------v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~s 74 (402)
++..+||.-||+|.+....+. . . +.|.|+++..+..+. +.+...+.. ..+...|...+++.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~-~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR-ENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH-HHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH-HHHHhcccCCceEEEecchhhcccccCC
Confidence 567999999999987744322 2 3 559999998886665 444455543 34566688889977889
Q ss_pred eeEEEecCcccccccC---h----HHHHHHHHHhcCCCeEEEEE
Q 015704 75 FDLIHCSRCRINWTRD---D----GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d---~----~~~l~e~~r~LkpgG~li~~ 111 (402)
+|.|+++..+-.-..+ . ..+++++.++|++...++++
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999998553322211 1 36788999999994444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0007 Score=60.19 Aligned_cols=140 Identities=21% Similarity=0.323 Sum_probs=81.7
Q ss_pred HhhHHHHHHHHHHHHhcccCCCCcceEEeccccchH--HHHHHhhcCCCceEEEeccCCC-CCChh-hHHhcCc--cccc
Q 015704 232 AESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGG--FAAALIEQKFDCWVMNVVPVSG-FNTLP-VIYDRGL--IGVM 305 (402)
Q Consensus 232 ~~~~~w~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~--~~~~l~~~~~~~~~~~v~~~~~-~~~~~-~~~~rg~--~~~~ 305 (402)
...+.|.+++..-...+..-.....+++|+|+|-|- +.-+++.. +..+.=|.+... -+.++ .+.+=|+ +..+
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p--~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARP--DLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-T--TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCC--CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 344566555553333333222211169999999984 33333333 223333333331 22333 3334466 6677
Q ss_pred ccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC---hhhHHHHHHHHHhcCceEEEee
Q 015704 306 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS---IDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 306 ~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~---~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
|...|. ..++.+||+|.|.- ...+..++.-..+.|||||.+++--. .+.....+...+.+.++.....
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRA-------v~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARA-------VAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEES-------SSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred Eeeecc-cccCCCccEEEeeh-------hcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 777777 44568999999983 34567888888899999999988743 3456666777777777766544
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00025 Score=70.38 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=67.5
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEecCccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
..+|||++||+|.++..++.. .|+++|+++..+..+. +.++.++.... +...|+..+....+.||+|+....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 358999999999999887643 5899999987765544 44444455433 555565443211457999997531
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+..++....+.+++||+++++.
T Consensus 135 ---Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 245678888788899999999983
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0002 Score=63.63 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=61.4
Q ss_pred CCCCCeEEEECCccchhHHHHccC----Cc--eEEeCCccchHHHHHHHHHHc----------CCCcEEEeccccCCCCC
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR----NV--ITMSIAPKDVHENQIQFALER----------GAPAMVAAFATRRLPYP 71 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~----~v--~~vdi~~~~~~~a~~~~a~~~----------~~~~~~~~~d~~~lp~~ 71 (402)
-.++.+.||+|+|+|.++..++.. .. .|+|..+.-+..+....-+.- .....+..+|....--+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 457889999999999888766532 22 666666543322221111110 01223455665555556
Q ss_pred CCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 72 ~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
...||.|++.. ......+++...|++||.+++-
T Consensus 160 ~a~YDaIhvGA-------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGA-------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCcceEEEcc-------CccccHHHHHHhhccCCeEEEe
Confidence 67899999863 3455667888899999999886
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00043 Score=65.04 Aligned_cols=107 Identities=16% Similarity=0.267 Sum_probs=71.0
Q ss_pred CcceEEeccccch----HHHHHHhhcCCC--ceEEEeccCC-CCCChhhHH---------hcCc----------------
Q 015704 254 KLRNVLDMRAGFG----GFAAALIEQKFD--CWVMNVVPVS-GFNTLPVIY---------DRGL---------------- 301 (402)
Q Consensus 254 ~~~~vLD~g~g~G----~~~~~l~~~~~~--~~~~~v~~~~-~~~~~~~~~---------~rg~---------------- 301 (402)
+.=+|.-+||++| +.|-.|.+.+.. -+.+.|.++| +...++.|. .+|+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3445999999999 466666655421 2467788877 444443331 1233
Q ss_pred -----------ccccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhh
Q 015704 302 -----------IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV 362 (402)
Q Consensus 302 -----------~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~ 362 (402)
.--.|+...+-+ ++.-||+|+|.||+-+.... .-..++..+...|+|||++++=.+..+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~-~q~~il~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEE-TQERILRRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHH-HHHHHHHHHHHHhCCCCEEEEccCccc
Confidence 011244433322 56889999999999998742 346999999999999999999765533
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00011 Score=64.89 Aligned_cols=99 Identities=21% Similarity=0.295 Sum_probs=57.0
Q ss_pred CCcceEEeccccchHHHHHHhhc--CCCceEEEeccCCCCCChh---hHHhc-C-----c-ccccccCCCCCC-C-CC-C
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVSGFNTLP---VIYDR-G-----L-IGVMHDWCEPFD-T-YP-R 317 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~~~~~~~---~~~~r-g-----~-~~~~~~~~~~~~-~-~~-~ 317 (402)
.+-++||++|||.|-.+-.++.. +. .|+..|.+..++ ...++ + - .-...+|.++.. . .+ +
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~-----~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAA-----RVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-S-----EEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-S
T ss_pred cCCceEEEECCccchhHHHHHhccCCc-----eEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccc
Confidence 34457999999999777777766 44 444444222222 11111 1 1 223347766431 1 23 6
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.||+|+++.++-.- ...+.++.=+.++|+|+|.+++..+
T Consensus 119 ~~D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 119 SFDVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SBSEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCCEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 89999999998763 3467888889999999999888854
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00025 Score=66.02 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=63.9
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCCC------CCCCe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLPY------PSQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~-~~lp~------~~~sf 75 (402)
++++|||||+++|.-+..++.. .++++|.++.....+. +.-.+.+.. ..+..++. +.++- ..++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar-~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL-PVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 5679999999999887777643 6889999875554444 233334433 22344442 22221 13689
Q ss_pred eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 76 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
|+|+.- +........+..+.++|+|||.+++-
T Consensus 158 D~iFiD----adK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVD----ADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEec----CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999953 22334467888889999999999886
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00013 Score=66.17 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=57.0
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCCCCCChhhHHhc----Cc--ccccccCCCCCCCC
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLPVIYDR----GL--IGVMHDWCEPFDTY 315 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~~~~~~~~~~r----g~--~~~~~~~~~~~~~~ 315 (402)
...+.+.+..+. +|||+|||+|-+++-|+.. |....|+.|...+ ...+.|.++ |+ +..++.-.. ..+
T Consensus 63 ~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~--~l~~~A~~~l~~~~~~nv~~~~gdg~--~g~ 136 (209)
T PF01135_consen 63 RMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP--ELAERARRNLARLGIDNVEVVVGDGS--EGW 136 (209)
T ss_dssp HHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH--HHHHHHHHHHHHHTTHSEEEEES-GG--GTT
T ss_pred HHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccH--HHHHHHHHHHHHhccCceeEEEcchh--hcc
Confidence 344455555553 5999999999999999876 3211344444332 233333332 33 334442221 234
Q ss_pred C--CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 316 P--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 316 ~--~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
| ..||.|++.......+ .++.+.|||||.+++--.
T Consensus 137 ~~~apfD~I~v~~a~~~ip---------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEIP---------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGG-SEEEEEESSBBSS-----------HHHHHTEEEEEEEEEEES
T ss_pred ccCCCcCEEEEeeccchHH---------HHHHHhcCCCcEEEEEEc
Confidence 4 5899999985554332 345667999999998543
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00048 Score=57.62 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=59.6
Q ss_pred CCCeEEEECCccch-hHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC-CCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVAS-FGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP-SQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~-~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~-~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|. ++..|.+. .|+++|+++.. .+.+++.+. .....|..+-++. -+.+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~a-----V~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp-- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKA-----VEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP-- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHH-----HHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC--
Confidence 45789999999995 88888775 78899988753 345555543 3444454333322 357999998654
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.+....+.++++.+ |.-+++.+.
T Consensus 87 --p~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 87 --PRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred --CHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 335566677777665 455777643
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.086 Score=51.07 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=59.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCCCCCCcccEEEEccccccccccC
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 335 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~ 335 (402)
..+||+||++|||+-.|+++|. .|+++|...+-+...+.+.|..+-...-.+.+-++.+|+|+|.- .+
T Consensus 213 ~~vlDLGAsPGGWT~~L~~rG~-----~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm-------ve 280 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRRGM-----FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDM-------VE 280 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHcCC-----EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEec-------cc
Confidence 3599999999999999999997 45555533333333444443333221111111136899999983 35
Q ss_pred CHHHHHHHhhhhccCC--cEEEEE
Q 015704 336 NMSTIMLEMDRMLRPG--GHVYIR 357 (402)
Q Consensus 336 ~~~~~l~e~~RvLrpg--G~~~~~ 357 (402)
.|..++.=|.+.|..| ..+|+.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEE
Confidence 5778888889999887 467777
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0021 Score=60.42 Aligned_cols=63 Identities=16% Similarity=0.397 Sum_probs=47.9
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE--------eC-------hh-hHHHHHHHHHhcCceEEEe
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR--------DS-------ID-VMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~--------~~-------~~-~~~~~~~~~~~~~w~~~~~ 380 (402)
++||+|.+.-++--. .++.+.|..|.++|||||++|=- +. .+ ..+.+..+++++.|++...
T Consensus 164 ~~~d~VvT~FFIDTA---~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 164 GSFDVVVTCFFIDTA---ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CcccEEEEEEEeech---HHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 389999888554443 36889999999999999976633 21 11 2789999999999999865
Q ss_pred ec
Q 015704 381 ET 382 (402)
Q Consensus 381 ~~ 382 (402)
+.
T Consensus 241 ~~ 242 (270)
T PF07942_consen 241 ES 242 (270)
T ss_pred EE
Confidence 54
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00034 Score=69.81 Aligned_cols=106 Identities=18% Similarity=0.301 Sum_probs=78.4
Q ss_pred cCCCCC-eEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC
Q 015704 7 WIRLLR-VVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 7 ~~~~~~-~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+-.+.. ++|-+|||.-.+...+.+. .++.+|+|+..+.......+++ .....+...|+..+.|++++||+|+.-.
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-RPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-CcceEEEEecchhccCCCcceeEEEecC
Confidence 334445 8999999999998888765 7888899987775554444422 2233466678899999999999999876
Q ss_pred cccccccCh---------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDD---------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~---------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+.++..+. ...+.+++|+|++||.++..+.
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 656554442 3457899999999999888765
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00025 Score=64.51 Aligned_cols=135 Identities=13% Similarity=0.169 Sum_probs=82.2
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCc---ccccc--cCCCCCCCC-CCcccEE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGL---IGVMH--DWCEPFDTY-PRTYDLL 322 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~---~~~~~--~~~~~~~~~-~~sfD~v 322 (402)
..++||.+|.+.|--+-.|+..=. ...-++.+| .+++.+.|. +-|+ +..+. ++.+.+... ..+||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~--~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALP--DDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCC--CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 566799999999977777765411 022456665 344444443 3355 22333 444444433 4899999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEe---------C-----hhhHHHHHHHHHhcCceEEEeecCCCCCC
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD---------S-----IDVMDELQEIGKAMGWHVTLRETAEGPHA 388 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~---------~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 388 (402)
+.. .++.+.+..+.+..++|||||.+++.+ + ......++.+..-+.|+-...-.- -| .
T Consensus 137 FID------adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~-lP-~ 208 (219)
T COG4122 137 FID------ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVL-LP-L 208 (219)
T ss_pred EEe------CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEE-Ee-c
Confidence 987 335566899999999999999999873 1 123444666666666653222110 01 1
Q ss_pred ceEEEEEEec
Q 015704 389 SYRILTADKR 398 (402)
Q Consensus 389 ~~~~l~~~k~ 398 (402)
+..++++.|.
T Consensus 209 gDGl~v~~k~ 218 (219)
T COG4122 209 GDGLLLSRKR 218 (219)
T ss_pred CCceEEEeec
Confidence 2558888874
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=7e-05 Score=66.22 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=68.2
Q ss_pred cccCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC
Q 015704 5 NTWIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 5 ~~~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+.++..+.++||+|+|.|.++..++.. .|.+.++|. .|+...++.+....... +-.+ .+-+||+|.|.+
T Consensus 107 p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~-----tMr~rL~kk~ynVl~~~-ew~~---t~~k~dli~clN 177 (288)
T KOG3987|consen 107 PAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSW-----TMRDRLKKKNYNVLTEI-EWLQ---TDVKLDLILCLN 177 (288)
T ss_pred CccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhH-----HHHHHHhhcCCceeeeh-hhhh---cCceeehHHHHH
Confidence 345667789999999999999988876 566665554 44455555544332211 1111 234699999876
Q ss_pred cccccccChHHHHHHHHHhcCC-CeEEEEE
Q 015704 83 CRINWTRDDGILLLEVNRMLRA-GGYFAWA 111 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~Lkp-gG~li~~ 111 (402)
. +.-+.++-++++.++.+|+| +|..+++
T Consensus 178 l-LDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 178 L-LDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred H-HHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 5 55556889999999999999 8988887
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00045 Score=66.30 Aligned_cols=95 Identities=20% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCCCCCCCeeEEEecCccccc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~-~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
....+|+|.|.|+.+..+... .+.++++....+.++....+ .+ .....+|. .+.| +-|+|+.-.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~~P----~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQDTP----KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceecccccccCC----CcCeEEEEeecccC
Confidence 468999999999999988875 56566665544333322221 22 22333342 3343 34699999999999
Q ss_pred ccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 88 TRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 88 ~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.++ ..++|++++..|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 854 47999999999999999999853
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00051 Score=61.68 Aligned_cols=99 Identities=22% Similarity=0.239 Sum_probs=62.3
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhHHhc----Cc--ccccccCCCCCCCC
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GL--IGVMHDWCEPFDTY 315 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~r----g~--~~~~~~~~~~~~~~ 315 (402)
.+.+.+....+ -+||+||||+|-.+|-|++..- .|..++. +...+.|..+ |+ +.+.|.- --.-|
T Consensus 63 ~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~-----~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD--G~~G~ 133 (209)
T COG2518 63 RMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVG-----RVVSIERIEELAEQARRNLETLGYENVTVRHGD--GSKGW 133 (209)
T ss_pred HHHHHhCCCCC--CeEEEECCCchHHHHHHHHHhC-----eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC--cccCC
Confidence 55555565555 4599999999999999998854 4444442 2223333222 33 4444421 11336
Q ss_pred C--CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 316 P--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 316 ~--~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
| .-||.|+..-....+++ . +.+-|||||.+++=..
T Consensus 134 ~~~aPyD~I~Vtaaa~~vP~------~---Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAAAPEVPE------A---LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeeccCCCCH------H---HHHhcccCCEEEEEEc
Confidence 6 58999999866666552 2 3457999999998644
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=2.6e-05 Score=65.84 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=39.9
Q ss_pred CCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 313 DTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 313 ~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|. +|.|+|.|.+|++|+.-. .-..+|+|-.|+|||||++-|.-+
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEEcC
Confidence 5565 999999999999999854 346999999999999999999943
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=62.06 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=64.1
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc----CCCcEEEeccccC-CCCCCC-CeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFATRR-LPYPSQ-AFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~~d~~~-lp~~~~-sfDlI 78 (402)
.++++||-||-|.|..+..+.+. .++.+|+++..+..+..-+.... .....+...|... +.-..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 36889999999999999999875 58888888765544432222211 1123344444211 112234 89999
Q ss_pred EecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.-.. -..... -..+++.+.+.|+|||.+++..
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 96432 222211 1689999999999999999975
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00051 Score=75.83 Aligned_cols=120 Identities=14% Similarity=0.151 Sum_probs=72.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-------------------Cc---ccccc-cCCCC
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-------------------GL---IGVMH-DWCEP 311 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-------------------g~---~~~~~-~~~~~ 311 (402)
..|||+|||+|.++-.|+++... ..|+++| ++.+++.|.+. ++ +..++ ++.+.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~---~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP---SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 35999999999999999987421 2566666 45555444221 11 23333 33322
Q ss_pred CCCCCCcccEEEEcc--------------cccccc--------ccCC-------------HHHHHHHhhhhccCCcEEEE
Q 015704 312 FDTYPRTYDLLHAAG--------------LFSVES--------KRCN-------------MSTIMLEMDRMLRPGGHVYI 356 (402)
Q Consensus 312 ~~~~~~sfD~v~~~~--------------~~~~~~--------~~~~-------------~~~~l~e~~RvLrpgG~~~~ 356 (402)
+......||+|+|.- |.+|-+ +.+. +..++.+..++|||||++++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 211012699999852 111110 0111 14788889999999999999
Q ss_pred EeChhhHHHHH-HHHHhcCceEE
Q 015704 357 RDSIDVMDELQ-EIGKAMGWHVT 378 (402)
Q Consensus 357 ~~~~~~~~~~~-~~~~~~~w~~~ 378 (402)
--....-+.+. +++++-.|+..
T Consensus 277 EiG~~q~~~v~~~l~~~~gf~~~ 299 (1082)
T PLN02672 277 NMGGRPGQAVCERLFERRGFRIT 299 (1082)
T ss_pred EECccHHHHHHHHHHHHCCCCee
Confidence 87666677777 57777666653
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00017 Score=65.24 Aligned_cols=133 Identities=18% Similarity=0.161 Sum_probs=75.1
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCCC--CCChhhHHhcCc---ccccccCC-CCCCC----C-CCcccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG--FNTLPVIYDRGL---IGVMHDWC-EPFDT----Y-PRTYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~--~~~~~~~~~rg~---~~~~~~~~-~~~~~----~-~~sfD~ 321 (402)
+.++||++||++|.-+.+|+.. +.+..+..+..... ....+.....|+ |..++.-+ +.++. . +..||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 5667999999999988888853 11123333333221 112233344465 33443221 11121 2 257999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHHHHH----hcCceEEEeecCCC
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGK----AMGWHVTLRETAEG 385 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~~~~----~~~w~~~~~~~~~~ 385 (402)
|+... ++.+....+..+.+.|||||.+++.+-. .....|+++.+ .=+....+-...
T Consensus 125 VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpig-- 196 (205)
T PF01596_consen 125 VFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIG-- 196 (205)
T ss_dssp EEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECST--
T ss_pred EEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeC--
Confidence 99983 3445678899999999999999998421 11222444433 345555555443
Q ss_pred CCCceEEEEEEec
Q 015704 386 PHASYRILTADKR 398 (402)
Q Consensus 386 ~~~~~~~l~~~k~ 398 (402)
..+++++|.
T Consensus 197 ----dGl~l~~K~ 205 (205)
T PF01596_consen 197 ----DGLTLARKR 205 (205)
T ss_dssp ----TEEEEEEE-
T ss_pred ----CeeEEEEEC
Confidence 448888874
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0019 Score=59.83 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=57.8
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-------CcccccccC--CCCCCCCC---CcccEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-------GLIGVMHDW--CEPFDTYP---RTYDLLH 323 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-------g~~~~~~~~--~~~~~~~~---~sfD~v~ 323 (402)
.+||+|||+|.++-.|+..=. ..-|+++| ++.+...|.+. |.+.++|.. .+.+.++| ..+|++.
T Consensus 151 ~ildlgtGSGaIslsll~~L~---~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLP---QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred eEEEecCCccHHHHHHHhcCC---CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 599999999999998876511 22445555 34444333332 446666542 23334454 6999999
Q ss_pred EccccccccccCCHH--------------------------HHHHHhhhhccCCcEEEEEeC
Q 015704 324 AAGLFSVESKRCNMS--------------------------TIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~--------------------------~~l~e~~RvLrpgG~~~~~~~ 359 (402)
|.- -|+.+. |++ .+..=.-|.|+|||.+.+.-.
T Consensus 228 sNP--PYI~~d-D~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 228 SNP--PYIRKD-DNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cCC--Cccccc-chhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 862 111111 111 333344599999999999844
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00062 Score=61.89 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=33.2
Q ss_pred CcccEEEEccccc--cccc-cCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 317 RTYDLLHAAGLFS--VESK-RCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 317 ~sfD~v~~~~~~~--~~~~-~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+-||+|.|-.+=. ||.+ ...+...+..+.|.|.|||++|+--
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 6899999976643 5532 2357899999999999999999974
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00038 Score=62.75 Aligned_cols=124 Identities=13% Similarity=0.187 Sum_probs=64.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||+|.++..++.+++ ..|+.+| ++..+..+.+ .|+ +..++.-...+...+ .+||+|++.-=+
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a----~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA----AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC----CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 599999999999987666653 1455555 2333332222 132 223322111111112 579999998322
Q ss_pred ccccccCC-HHHHHHHhh--hhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 329 SVESKRCN-MSTIMLEMD--RMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 329 ~~~~~~~~-~~~~l~e~~--RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
+.. .+.++.-+. .+|+|+|.++++-.... .+..... .|+... ...+| .-++.+.+|
T Consensus 132 -----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~--~~~~~~~--~~~~~~-~k~yG---~s~~~~~~~ 190 (199)
T PRK10909 132 -----RKGLLEETINLLEDNGWLADEALIYVESEVEN--GLPTVPA--NWQLHR-EKVAG---QVAYRLYIR 190 (199)
T ss_pred -----CCChHHHHHHHHHHCCCcCCCcEEEEEecCCC--CcccCCC--ccEEEE-EecCC---CEEEEEEEE
Confidence 122 234444333 35899999999865421 1111111 366543 33344 456666665
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00095 Score=62.56 Aligned_cols=126 Identities=16% Similarity=0.224 Sum_probs=79.2
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CC----CChhhHHhcCcc---cccccCCCCCCCCC---CcccE
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GF----NTLPVIYDRGLI---GVMHDWCEPFDTYP---RTYDL 321 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~----~~~~~~~~rg~~---~~~~~~~~~~~~~~---~sfD~ 321 (402)
++--+||||.||.|.+--........ -..+|.=.| ++ .-.+.+.+||+- .+.+..|-+...|. -..++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~-~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPE-RPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCC-CCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 44445999999999876665444221 122333333 32 233688899992 33333222222232 35799
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHh----cCceEEE
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKA----MGWHVTL 379 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~----~~w~~~~ 379 (402)
++.+.+++..+|...+...|.=+.+.|.|||++|.+-.. -.++-|...+.+ -.|-..-
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr 276 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR 276 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence 999999999998766677899999999999999999632 124444444433 3565443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00086 Score=63.57 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.|||+|||+|.++...++. .|.+++.+. |...+. +....+++.. .++.+.+++..+| ++.|+|++-.+-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~-~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYAR-KLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHH-HHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4678999999999776555443 788888764 332222 2222233322 2444567777766 689999976543
Q ss_pred cccccCh-HHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTRDD-GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~d~-~~~l~e~~r~LkpgG~li~~ 111 (402)
.-+.++. -...-..++.|+|.|..+=+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 3333221 12233456999999998654
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00066 Score=63.32 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=33.7
Q ss_pred CeeEEEecCcccccccCh---HHHHHHHHHhcCCCeEEEEEe
Q 015704 74 AFDLIHCSRCRINWTRDD---GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 74 sfDlI~s~~~~~~~~~d~---~~~l~e~~r~LkpgG~li~~~ 112 (402)
.||+|++..++.....+. ..+++++.++|||||.|++..
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 599999999988887776 578999999999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0028 Score=62.77 Aligned_cols=109 Identities=15% Similarity=0.067 Sum_probs=73.6
Q ss_pred CCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-C---CCCCCCeeEEEe
Q 015704 11 LRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-L---PYPSQAFDLIHC 80 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~-l---p~~~~sfDlI~s 80 (402)
+++|||+-|=||.++.+.+.. .++.+|+|...+.-+. +...-+++. ..+.+.|+-. + .-...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~-~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWAR-ENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHH-HHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 789999999999988777653 8999999987776555 333334443 2355555322 2 123458999997
Q ss_pred cCccccccc--------ChHHHHHHHHHhcCCCeEEEEEeCCCCCChH
Q 015704 81 SRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQPVYKHEE 120 (402)
Q Consensus 81 ~~~~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~ 120 (402)
-...+.-.. +...++..+.++|+|||.+++++.....+..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~ 344 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSD 344 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHH
Confidence 544333221 2346788899999999999999754444433
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00037 Score=58.32 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCCeEEEECCccchhHHHHc---cCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLL---PRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~---~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.+.+++|+|||.|.+..... ...++|+|+.+..+.-. .+.+.+..++..+.++++.++-+..+.||.++-+..
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf-~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIF-TRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHH-hhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 67899999999997763332 23789999998766433 244555555556777788888777899999997755
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00056 Score=61.57 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=61.2
Q ss_pred CCCCeEEEECCccchhHHHHcc--C--CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP--R--NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~--~--~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|+|+.||.|.++..++. . .|.++|++|...... .+.++.++... .....|...++. .+.||.|+++.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L-~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL-KENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH-HHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH-HHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 4678999999999999988876 3 699999999766443 35555555543 345667666554 68999999753
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEE
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFA 109 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li 109 (402)
. ..-..++..+.+++++||.+-
T Consensus 178 p-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 P-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred h-----HHHHHHHHHHHHHhcCCcEEE
Confidence 2 233468888999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00089 Score=65.92 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=62.1
Q ss_pred CeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCC-C-------C---C-----C
Q 015704 12 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRL-P-------Y---P-----S 72 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~l-p-------~---~-----~ 72 (402)
.+|||++||+|.++..+++. .++++|+++.++..+. +.+...+..+ .+...|+... + + . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 47999999999999988765 7999999998886665 4455555543 3555554331 1 1 0 1
Q ss_pred CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
..||+|+....--. -...+++.+. +|+++++++..|
T Consensus 278 ~~~d~v~lDPPR~G---~~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 278 YNCSTIFVDPPRAG---LDPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred CCCCEEEECCCCCC---CcHHHHHHHH---cCCcEEEEEcCH
Confidence 23799997543111 1244555554 379999999643
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=58.80 Aligned_cols=104 Identities=23% Similarity=0.261 Sum_probs=56.0
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEe--ccccC-CCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAA--FATRR-LPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~--~d~~~-lp~~~~sfDlI~s~ 81 (402)
.+.+|||+||++|.++..+.++ .++++|+.+...... ...-..+..... ..+.. ++-..+.||+|+|-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~----~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQN----VSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TT----EEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccc----eeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 4579999999999999998876 588999987521100 000000011000 01111 11123689999974
Q ss_pred CcccccccC----h-------HHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 82 RCRINWTRD----D-------GILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 82 ~~~~~~~~d----~-------~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
. ......+ . ...+.-+.+.|+|||.+++..+.....
T Consensus 99 ~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 99 M-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred c-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 3 2222221 1 234555667899999999987654443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.001 Score=65.72 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=63.1
Q ss_pred CeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC-C-CC--------------C
Q 015704 12 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL-P-YP--------------S 72 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~l-p-~~--------------~ 72 (402)
.+|||++||+|.++..+++. .|+++|+++.++..+. +.+...+.. ..+...|+... + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988765 7999999998886655 445555554 33555554331 1 10 1
Q ss_pred CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.+||+|+..... ..-...+++.+.+ |+++++++..|
T Consensus 287 ~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 258999976542 1112455555544 78999999754
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0025 Score=61.61 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=67.5
Q ss_pred CCCeEEEECCccchhHHHHccC--------CceEEeCCccchHHHHHHHHHHcCCCcE-E--Eeccc----cCCCC--CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--------NVITMSIAPKDVHENQIQFALERGAPAM-V--AAFAT----RRLPY--PS 72 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--------~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~--~~~d~----~~lp~--~~ 72 (402)
++..++|+|||+|.=+..|++. .++++|+|...+..+..+...+. .+.+ + ..+|. ..++- ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-FSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-CCCeEEEEEEecHHHHHhhccccccc
Confidence 4558999999999755544332 58899999988876665544222 2322 2 33332 11321 12
Q ss_pred CCeeEEEecC-cccccccC-hHHHHHHHHH-hcCCCeEEEEEeCCCCCChHHHHHHH
Q 015704 73 QAFDLIHCSR-CRINWTRD-DGILLLEVNR-MLRAGGYFAWAAQPVYKHEEAQEEHW 126 (402)
Q Consensus 73 ~sfDlI~s~~-~~~~~~~d-~~~~l~e~~r-~LkpgG~li~~~~~~~~~~~el~~~~ 126 (402)
....+++... ++-++.++ ...+|+++++ .|+|||.|++.. ........+..+|
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~-D~~k~~~~l~~AY 210 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL-DGCKDPDKVLRAY 210 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec-CCCCCHHHHHHHh
Confidence 3456666543 33333322 2578999999 999999999984 2333333344444
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00073 Score=60.12 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=62.8
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc--EEEecc-ccCCC---CCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFA-TRRLP---YPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d-~~~lp---~~~~sfDlI~ 79 (402)
-.+.++||+-||+|.++...+++ .++.+|.+........ +....-+... .+...| ...++ ....+||+|+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~-~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK-KNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-HHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-HHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 35789999999999999887776 7888898876553332 3333334332 344444 22222 2467899999
Q ss_pred ecCcccccccChHHHHHHHH--HhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRDDGILLLEVN--RMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~--r~LkpgG~li~~~~ 113 (402)
.-..+.. ......++..+. .+|+++|.+++.+.
T Consensus 120 lDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 120 LDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp E--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 8654222 211266777776 79999999999863
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0042 Score=55.99 Aligned_cols=113 Identities=12% Similarity=0.205 Sum_probs=75.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEcccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKR 334 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~ 334 (402)
++|||||=....+ +...+ ..+|+++|-..+ +-|+ -.+... -++|.-+ +.||+|.||.||.++++.
T Consensus 54 rlLEVGals~~N~--~s~~~----~fdvt~IDLns~-----~~~I~qqDFm~--rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 54 RLLEVGALSTDNA--CSTSG----WFDVTRIDLNSQ-----HPGILQQDFME--RPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred eEEeecccCCCCc--ccccC----ceeeEEeecCCC-----CCCceeecccc--CCCCCCcccceeEEEEEEEEeeCCCH
Confidence 4999999754322 22222 235777773211 2222 111111 1233334 699999999999999987
Q ss_pred CCHHHHHHHhhhhccCCcE-----EEEEeC-------hhh-HHHHHHHHHhcCceEEEeec
Q 015704 335 CNMSTIMLEMDRMLRPGGH-----VYIRDS-------IDV-MDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 335 ~~~~~~l~e~~RvLrpgG~-----~~~~~~-------~~~-~~~~~~~~~~~~w~~~~~~~ 382 (402)
...-..|+-..+.|||+|. ++|--+ .+. .+.++.+..+|.+......+
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEe
Confidence 6667999999999999999 666533 233 56889999999999887654
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0095 Score=54.10 Aligned_cols=151 Identities=20% Similarity=0.250 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHhcccCCCCcceEEeccccchHHHHHHh--hcCCCceEEEeccCCCC----CCh-hhHHhcCc--cc
Q 015704 233 ESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALI--EQKFDCWVMNVVPVSGF----NTL-PVIYDRGL--IG 303 (402)
Q Consensus 233 ~~~~w~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~--~~~~~~~~~~v~~~~~~----~~~-~~~~~rg~--~~ 303 (402)
..+.|.+++-.-.......+....+++|+|+|.|-=+-=|| .... +|+-+|+. +.+ +.+.+=|+ +.
T Consensus 46 ~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~-----~vtLles~~Kk~~FL~~~~~eL~L~nv~ 120 (215)
T COG0357 46 PEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDL-----KVTLLESLGKKIAFLREVKKELGLENVE 120 (215)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCC-----cEEEEccCchHHHHHHHHHHHhCCCCeE
Confidence 34566555543333333222214569999999995444433 3322 46666542 222 33444466 67
Q ss_pred ccccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEE---EEeChhhHHHHHHHHHhcCceEEEe
Q 015704 304 VMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY---IRDSIDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 304 ~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~---~~~~~~~~~~~~~~~~~~~w~~~~~ 380 (402)
.+|...|.+..-+.-||+|.|.- .+.+..++.=....||+||.++ +.-..+.....+.......+.+..+
T Consensus 121 i~~~RaE~~~~~~~~~D~vtsRA-------va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 121 IVHGRAEEFGQEKKQYDVVTSRA-------VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred EehhhHhhcccccccCcEEEeeh-------ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 77777776553221199999972 2333444444568999999874 3344566777888888888887776
Q ss_pred ecCCCC-CCceEEEEE
Q 015704 381 ETAEGP-HASYRILTA 395 (402)
Q Consensus 381 ~~~~~~-~~~~~~l~~ 395 (402)
..-.-+ ...++.|+.
T Consensus 194 ~~~~~p~~~~~r~l~i 209 (215)
T COG0357 194 FSLTVPELDGERHLVI 209 (215)
T ss_pred EEeecCCCCCceEEEE
Confidence 543322 223455543
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0036 Score=60.22 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=66.6
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh--cCcccccccCCCCCCCCCCcccEEEEcccccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD--RGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~--rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~ 330 (402)
..+...+|+|.|.|.....+..+-..|..+|.... ..++.+.. -|+ -|--+.-|-.-| +=|+|++.-+++|
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp---~v~~~a~~~~~gV---~~v~gdmfq~~P-~~daI~mkWiLhd 248 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLP---FVLAAAPYLAPGV---EHVAGDMFQDTP-KGDAIWMKWILHD 248 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHH---HHHhhhhhhcCCc---ceecccccccCC-CcCeEEEEeeccc
Confidence 36778999999999999999885432223332222 12222211 332 222222222223 3369999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+.|. +..++|+-...-|+|||.+++-|+
T Consensus 249 wtDe-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CChH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 9975 779999999999999999999976
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0013 Score=63.59 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=60.4
Q ss_pred CCCeEEEECCccchhHHHHcc-----------CCceEEeCCccchHHHHHHHHHHcCC--C-cEEEeccccCCC-CC-CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----------RNVITMSIAPKDVHENQIQFALERGA--P-AMVAAFATRRLP-YP-SQ 73 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----------~~v~~vdi~~~~~~~a~~~~a~~~~~--~-~~~~~~d~~~lp-~~-~~ 73 (402)
++.+|+|.+||+|.+.....+ ..+.|+|+++....-+...... ++. . ..+...|.-..+ .. ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCEEEES-TTTSHSCTST-
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccccccccccccccccccccc
Confidence 455899999999988765543 2688899987665544433332 221 1 124444432222 22 47
Q ss_pred CeeEEEecCccccc--cc-----------------C-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 74 AFDLIHCSRCRINW--TR-----------------D-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 74 sfDlI~s~~~~~~~--~~-----------------d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.||+|+++..+-.. .. . .-.++..+.+.|++||.+++..+
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 89999998665433 10 0 12578899999999999888754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0029 Score=60.16 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=65.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CC--CCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LP--YPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~-lp--~~~~sfDlI~s 80 (402)
.+++|||+-|=||.++.+.+.. .++.+|.|...+..+..+ +.-++++ ..+...|+.. +. -..++||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N-~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKEN-AALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHH-HHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999998876544 689999998877666643 3334432 2355555322 11 12468999998
Q ss_pred cCccccc-----ccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINW-----TRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~-----~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
-...+.- ..+...++..+.++|+|||.+++++.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 6543321 11235778889999999999998864
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0041 Score=58.99 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=56.9
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCC-CcE-EEec-cccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA-PAM-VAAF-ATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~-~~~-~~~~-d~~~lp~~~~sfDlI~s~ 81 (402)
.+.+|||+|||+|..+....+ ..++++|.++.++..+. ...+.... ... .... -.+..++. ..|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK-RLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH-HHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 567999999999965544432 16778888877664433 22222111 111 0000 01122332 33999999
Q ss_pred CcccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++..+... ...+++.+.+.+.+ .|++..+
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 888877652 24566666666655 8887743
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.016 Score=52.05 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=63.6
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sf 75 (402)
.++.+|+|+|+..|.+++.+++. .|+++|+.+.+.... ..+.+.|+..-+ +....+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~-----------V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPG-----------VIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCC-----------ceEEeeeccCccHHHHHHHHcCCCCc
Confidence 45789999999999999988765 389999998654221 234444432221 234457
Q ss_pred eEEEecCc---ccccccCh-------HHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 76 DLIHCSRC---RINWTRDD-------GILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 76 DlI~s~~~---~~~~~~d~-------~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
|+|+|-.. .-++..|. ..++.-+..+|+|||.+++..+-+...
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 99996321 12222221 245566778999999999997644433
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0039 Score=64.76 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=39.9
Q ss_pred CCCeEEEECCccchhHHHHccC------------CceEEeCCccchHHHHHHHHHHcCCCcEEEecccc-C-C---CCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR------------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-R-L---PYPS 72 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~------------~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~-~-l---p~~~ 72 (402)
...+|||.|||+|.+...++.. .+.++|+++..+..+.............+...+.. . . +-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3468999999999887666532 34555665544433322221111111122222211 0 0 1112
Q ss_pred CCeeEEEecCcccc
Q 015704 73 QAFDLIHCSRCRIN 86 (402)
Q Consensus 73 ~sfDlI~s~~~~~~ 86 (402)
+.||+|++|.....
T Consensus 111 ~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 111 DLFDIVITNPPYGR 124 (524)
T ss_pred CcccEEEeCCCccc
Confidence 57999999876553
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.031 Score=54.07 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEecc-ccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFA-TRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d-~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.++||+||++|.++..+.++ .|+++|..+-+. ... ..........+ ....| +.+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~------~L~-~~~~V~h~~~d~fr~~p-~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ------SLM-DTGQVEHLRADGFKFRP-PRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH------hhh-CCCCEEEEeccCcccCC-CCCCCCEEEEecc--
Confidence 46789999999999999999987 689998554221 111 12223333333 33333 2578999997532
Q ss_pred ccccChHHHHHHHHHhcCCC--eEEEEEe-CCCCCChHHHHHHHHHHHh
Q 015704 86 NWTRDDGILLLEVNRMLRAG--GYFAWAA-QPVYKHEEAQEEHWKEMLD 131 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~Lkpg--G~li~~~-~~~~~~~~el~~~~~~~~~ 131 (402)
..|.+..+-+.+.|..| ..+++.- +|......+.++....+..
T Consensus 280 ---e~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~ 325 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEE 325 (357)
T ss_pred ---cCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35778888888888766 3455542 4555555666666555544
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0054 Score=58.23 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=75.9
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh--cCccccccc-CCCC----CCCCCCcccEEEEc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD--RGLIGVMHD-WCEP----FDTYPRTYDLLHAA 325 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~--rg~~~~~~~-~~~~----~~~~~~sfD~v~~~ 325 (402)
.-++|||+|||+|+-.-+..+. .+ ..-.++.+| +..+++++.. ++.....+. +... ..++ ...|+|.++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~-~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREV-WP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-PPDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHH-hc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC-CCCcEEEEe
Confidence 4557999999999755544432 01 123555666 4555554322 111111111 1111 1122 234999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCceEEEee
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~~~~~~ 381 (402)
++|..+.+ .....++..+.+.+.+ ++||=|+- ..+..+++.+....+.+.++=
T Consensus 110 ~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~APC 167 (274)
T PF09243_consen 110 YVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVAPC 167 (274)
T ss_pred hhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceECCC
Confidence 99999987 6678888888887777 88888753 557788888877777777653
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.014 Score=53.36 Aligned_cols=117 Identities=21% Similarity=0.349 Sum_probs=78.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-cccc-ccCCCCCCC--CCCcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVM-HDWCEPFDT--YPRTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~-~~~~~~~~~--~~~sfD~v~~~~~~~~ 330 (402)
+.+||+|+-+|||+-.|.++|+. .|.++| ..+++.--..... +-.+ ......+.+ |..-.|++.|.-.|--
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gAk----~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFIS 156 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGAK----HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFIS 156 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCCc----EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehhh
Confidence 34999999999999999999873 677777 5666654433333 1111 011111111 2235688888855543
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEE-------------------eC---hhhHHHHHHHHHhcCceEEEeec
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIR-------------------DS---IDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~-------------------~~---~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+ ..+|-.+..+|+|+|-+++- |+ ..++.++...+....|.+.--..
T Consensus 157 L------~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 157 L------KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred H------HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEc
Confidence 3 47899999999999988876 22 24577888899999999776443
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0035 Score=55.33 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=62.5
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.+++|||+|+|+|..+..-+.. .+++.|+.+.-. .+..-.+..++....+...|. + .++..||+++.+.+++.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~--~-g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADL--I-GSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccc--c-CCCcceeEEEeeceecC
Confidence 5689999999999665444432 677888886433 333334445554444444332 2 25678999998876544
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYK 117 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~ 117 (402)
.. ...+++. +.+.|+..|..++..-|...
T Consensus 155 ~~-~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 155 HT-EADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred ch-HHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 32 2355666 77777777766665434433
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0075 Score=56.33 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCcccEEEEccccccc-cccCCHHHHHHHhhhhccCCcEEEEEeC----------------hhhHHHHHHHHHhcCceEE
Q 015704 316 PRTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDS----------------IDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 316 ~~sfD~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~----------------~~~~~~~~~~~~~~~w~~~ 378 (402)
|..||+|.+.-.++.. .+......+|+.|-+.|||||++|+-.- .-..+-|++.+++-...+.
T Consensus 156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256)
T PF01234_consen 156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256)
T ss_dssp -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEE
T ss_pred ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEE
Confidence 4569999999888874 3444556999999999999999999831 0114566677777777777
Q ss_pred EeecCCC--CCCceEEEEEEe
Q 015704 379 LRETAEG--PHASYRILTADK 397 (402)
Q Consensus 379 ~~~~~~~--~~~~~~~l~~~k 397 (402)
..+.... .....-+++|+|
T Consensus 236 ~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 236 DLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEEG-TTTB---EEEEEEEEE
T ss_pred ecccccCcCCCCcEEEEEEeC
Confidence 6664222 334466667776
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.004 Score=63.35 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=58.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh---hhHHhc-Cc--ccccccCCCCCC-CCCCcccEEE----E
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL---PVIYDR-GL--IGVMHDWCEPFD-TYPRTYDLLH----A 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~---~~~~~r-g~--~~~~~~~~~~~~-~~~~sfD~v~----~ 324 (402)
.|||+.||+|+=+.+|++.-. -...|++.| +...+ ....+| |+ +...+.-...+. .+|.+||.|+ |
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~--~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMN--NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 599999999998888887511 011455555 22333 333333 54 222222122222 3567899999 6
Q ss_pred ccc--cccccc------cCCH-------HHHHHHhhhhccCCcEEEEEe
Q 015704 325 AGL--FSVESK------RCNM-------STIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 325 ~~~--~~~~~~------~~~~-------~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|.. |..-++ ..++ ..+|....+.|||||+++.+.
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 632 222110 0001 278888899999999999984
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.01 Score=57.91 Aligned_cols=100 Identities=14% Similarity=0.182 Sum_probs=56.6
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc----------ccccccCCCC-CCCCCCcccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----------IGVMHDWCEP-FDTYPRTYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~----------~~~~~~~~~~-~~~~~~sfD~ 321 (402)
..++||-+|+|.|+.+..+.+.. ++. .|+.+| .+..++.+.+.-- +..+.+-.-. +..-+++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~--~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVE--KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCC--eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 45689999999999999888763 122 344444 3445555544310 1111110101 1111368999
Q ss_pred EEEcccccccc-ccCC---HHHHHH-HhhhhccCCcEEEEE
Q 015704 322 LHAAGLFSVES-KRCN---MSTIML-EMDRMLRPGGHVYIR 357 (402)
Q Consensus 322 v~~~~~~~~~~-~~~~---~~~~l~-e~~RvLrpgG~~~~~ 357 (402)
|++.. ..... ..+. -...+. .+.|.|+|||.+++.
T Consensus 180 Ii~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 99872 11110 0000 025666 789999999999875
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0085 Score=54.32 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=64.5
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcE--EEecc-ccCCC-----CCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM--VAAFA-TRRLP-----YPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d-~~~lp-----~~~~sfD 76 (402)
+++++||+|.=||.-+..++.. +|+++|++........ +..+..+.... +.... .+.++ .+.++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 5679999998888554444432 8999999886655442 33334443322 22222 22221 3468999
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+++. -+|..+-.....++.+++|+||.+++-
T Consensus 152 faFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 9994 556655578899999999999999987
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0024 Score=60.10 Aligned_cols=62 Identities=13% Similarity=0.214 Sum_probs=41.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|++++. .|+++| ++.+++.+.++ +-+..++. ++..++ ..||.|+++
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~-----~v~~vEid~~~~~~l~~~~~~~~~v~ii~~---D~~~~~~~~~d~Vv~N 98 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAK-----KVYAIELDPRLAEFLRDDEIAAGNVEIIEG---DALKVDLPEFNKVVSN 98 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHhccCCCEEEEEe---ccccCCchhceEEEEc
Confidence 4699999999999999999975 455555 34566555543 11333432 223344 468999887
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0026 Score=60.36 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=41.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC---cccccccCCCCCCCCCC-cccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG---LIGVMHDWCEPFDTYPR-TYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg---~~~~~~~~~~~~~~~~~-sfD~v~~~ 325 (402)
..|||+|||+|.++..|++++. .|+++| ++.+++.+.++. -+..++.-...+ +++. .+|.|++.
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~-----~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~-~~~~~~~~~vv~N 112 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA-----KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV-DLSELQPLKVVAN 112 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC-----cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC-CHHHcCcceEEEe
Confidence 3599999999999999999975 566666 466777766542 233333322222 2332 25778776
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0095 Score=52.69 Aligned_cols=103 Identities=21% Similarity=0.155 Sum_probs=62.9
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcC--CCcEEEecccc-CCCCCC--CCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG--APAMVAAFATR-RLPYPS--QAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~--~~~~~~~~d~~-~lp~~~--~sfDlI~s~ 81 (402)
.+.++||+=+|+|.++...+++ .++.+|.+........ +..+.-+ ....+...|+. .++-.. ++||+|+.-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~-~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK-ENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 5689999999999999888877 7888888875543332 2333333 23334444433 222222 259999976
Q ss_pred CcccccccChHHHHHH--HHHhcCCCeEEEEEeC
Q 015704 82 RCRINWTRDDGILLLE--VNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e--~~r~LkpgG~li~~~~ 113 (402)
..+..-.-+....+.. -..+|+|+|.+++.+.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 5533111112333333 4578999999999853
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=58.03 Aligned_cols=110 Identities=13% Similarity=0.197 Sum_probs=63.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-------CC------
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-------YP------ 316 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-------~~------ 316 (402)
.|||++||+|.|+-.|++... .|+++| ++.+++.+.+. |+ +..+....+.+.. ++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~-----~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR-----RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence 399999999999999988754 566665 45556544443 33 2222211111110 10
Q ss_pred ---CcccEEEEccccccccccCCH-HHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHhcCceEEEeec
Q 015704 317 ---RTYDLLHAAGLFSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 317 ---~sfD~v~~~~~~~~~~~~~~~-~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~ 382 (402)
..||+|+.. +++.++ ..++.- +++|++.++++=+... .+-+..+.++ |++..-+-
T Consensus 275 ~~~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~~v~~ 334 (353)
T TIGR02143 275 LKSYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVERFAL 334 (353)
T ss_pred cccCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEEEEEE
Confidence 127988887 445443 244443 4569999999965544 4445544444 88776543
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0037 Score=58.14 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=67.0
Q ss_pred cccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCCC--CCChhhHHhcCc---ccccc-cCCCC-CC-CCCCc
Q 015704 248 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG--FNTLPVIYDRGL---IGVMH-DWCEP-FD-TYPRT 318 (402)
Q Consensus 248 ~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~--~~~~~~~~~rg~---~~~~~-~~~~~-~~-~~~~s 318 (402)
+.+..|.. ||+.|.|+|.++.+|+.. +....+....--+. ....+.....|+ +...| |.|+. |. ...+.
T Consensus 36 l~i~pG~~--VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 36 LDIRPGSR--VLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp TT--TT-E--EEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTS
T ss_pred cCCCCCCE--EEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCc
Confidence 34555543 999999999999999853 21123333222211 112222233355 44444 55532 21 12368
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhc-cCCcEEEEEeCh-hhHHHHHHHHHhcCceE
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRML-RPGGHVYIRDSI-DVMDELQEIGKAMGWHV 377 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvL-rpgG~~~~~~~~-~~~~~~~~~~~~~~w~~ 377 (402)
||.|+-. -.+|-.++..+.++| ||||.+.+=.+. ++..+.-..+++..|.-
T Consensus 114 ~DavfLD--------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 114 FDAVFLD--------LPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp EEEEEEE--------SSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccEEEEe--------CCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 9999887 446779999999999 999999887664 33333344455556754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=53.63 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=74.6
Q ss_pred eEEeccccchHHHHHHhhc----CCCceEEEeccCCCCCChhhHHhcCc-ccccccCCCCCCCCC---CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEPFDTYP---RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~----~~~~~~~~v~~~~~~~~~~~~~~rg~-~~~~~~~~~~~~~~~---~sfD~v~~~~~~ 328 (402)
.||-+|+.+|+...++++- | -|+.+...|....+.+..|..|-- +..+-+-..+ ..|. ...|+|++.-
T Consensus 76 kVLYLGAasGTTVSHvSDIvg~~G-~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P-~~Y~~lv~~VDvI~~DV-- 151 (229)
T PF01269_consen 76 KVLYLGAASGTTVSHVSDIVGPDG-VVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP-EKYRMLVEMVDVIFQDV-- 151 (229)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG-GGGTTTS--EEEEEEE---
T ss_pred EEEEecccCCCccchhhhccCCCC-cEEEEEecchhHHHHHHHhccCCceeeeeccCCCh-HHhhcccccccEEEecC--
Confidence 4999999999999998764 3 245555555444677788888854 6666554322 1132 5889999971
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC----------hhhHHHHHHHHHhcCceEEEeecC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------IDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~----------~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
..+....-++.-...-|||||+++|.=+ .++...-.+.++.-..+...+-+.
T Consensus 152 ---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 152 ---AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp ---SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred ---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 1122345777888899999999999832 233333334455555666655443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0039 Score=58.11 Aligned_cols=76 Identities=16% Similarity=0.082 Sum_probs=51.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCC-CeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ-AFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~-sfDlI~s~~~~~~ 86 (402)
++..|||||+|.|.+|..|+++ .|+++++++.....-. +... ......+..+|+...+++.- .++.|++|.. ++
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~-~~~~-~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP-Y~ 106 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLK-ERFA-PYDNLTVINGDALKFDFPSLAQPYKVVANLP-YN 106 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHH-Hhcc-cccceEEEeCchhcCcchhhcCCCEEEEcCC-Cc
Confidence 4679999999999999999987 7899999875442222 1111 12234466678777777643 6788998754 44
Q ss_pred cc
Q 015704 87 WT 88 (402)
Q Consensus 87 ~~ 88 (402)
..
T Consensus 107 Is 108 (259)
T COG0030 107 IS 108 (259)
T ss_pred cc
Confidence 44
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0085 Score=60.38 Aligned_cols=99 Identities=22% Similarity=0.243 Sum_probs=69.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCC---CCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYP---SQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~---~~sfDlI~s~~~ 83 (402)
++.++||+=||.|.++..|+.+ .|+|+++++.++..+. +.|+.++..+. +..++.+..... ...+|.|+....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 4568999999999999999976 8999999998886665 66667776654 555665555422 357899995432
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
--- -...+++.+. .++|..++++|..
T Consensus 372 R~G---~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 372 RAG---ADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred CCC---CCHHHHHHHH-hcCCCcEEEEeCC
Confidence 100 0134555544 4578889999964
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0047 Score=57.24 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=51.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC----cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~----~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+++..|||+|.|||.++..|++. .|+++++++.++.+-... -+|.+ ..+..+|.-..++| .||.+++|.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~kr---v~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsNl 131 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKR---VQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSNL 131 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHH---hcCCCccceeeEEecccccCCCc--ccceeeccC
Confidence 46779999999999999999886 899999998776544321 12333 23555665555544 799999764
Q ss_pred cccccc
Q 015704 83 CRINWT 88 (402)
Q Consensus 83 ~~~~~~ 88 (402)
. .+..
T Consensus 132 P-yqIS 136 (315)
T KOG0820|consen 132 P-YQIS 136 (315)
T ss_pred C-cccc
Confidence 3 4444
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.017 Score=56.94 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=66.0
Q ss_pred CCCCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC---CCCCCeeE
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP---YPSQAFDL 77 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp---~~~~sfDl 77 (402)
..++.+|||+.++.|.=+.++++. .|+++|+++.-+... .+..++-|..+ .....|...++ ...+.||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l-~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRL-RENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHH-HHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 356789999999999655555543 258999988655333 35555556665 34444444333 22235999
Q ss_pred EEe----cCc-ccc------cccC----------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 78 IHC----SRC-RIN------WTRD----------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 78 I~s----~~~-~~~------~~~d----------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. +.. .++ |... ...+|....+.|||||.++.+|-
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 995 211 111 1111 13678889999999999999973
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0014 Score=59.08 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=52.8
Q ss_pred eEEeccccchHHHHHHhh--cCCCceEEEeccCCCCCChhhHHhcCc---ccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 257 NVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~--~~~~~~~~~v~~~~~~~~~~~~~~rg~---~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
.|+||-||.|.|+-.+++ +++.|+..++.|..-.-+.+-+...++ +..++.-+..+.+ ...||-|++. +
T Consensus 104 ~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~-----l 177 (200)
T PF02475_consen 104 VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN-----L 177 (200)
T ss_dssp EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------
T ss_pred EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC-----C
Confidence 599999999999999998 666556666666542222222222233 4344443433333 4799977776 3
Q ss_pred cccCCHHHHHHHhhhhccCCcEEE
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVY 355 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~ 355 (402)
+.. -...|.+..+++|+||.+-
T Consensus 178 p~~--~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PES--SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSS--GGGGHHHHHHHEEEEEEEE
T ss_pred hHH--HHHHHHHHHHHhcCCcEEE
Confidence 322 2478889999999999863
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0096 Score=55.78 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=28.6
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD 298 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~ 298 (402)
-..|||+|||+|.++..|++++. .|+.+| ++.+++.+.+
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~-----~v~~iE~d~~~~~~l~~ 69 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAK-----KVTAIEIDPRLAEILRK 69 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC-----cEEEEECCHHHHHHHHH
Confidence 35699999999999999999976 355555 3455555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0038 Score=59.31 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=69.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh----cCc---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~----rg~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
+.|||+|||.|.....-+..|+. .|-+++.++|.+.|.. ..+ |.++...-|++. .|+..|++++--.=
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~----~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LPEk~DviISEPMG 253 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAK----KVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-LPEKVDVIISEPMG 253 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcc----eEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc-CchhccEEEeccch
Confidence 45999999999877776666652 4445554566655432 222 555655556643 78999999986322
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC-------hhhHHHHHHHHHhcCce
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-------IDVMDELQEIGKAMGWH 376 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-------~~~~~~~~~~~~~~~w~ 376 (402)
..|-+. .+...-...+|.|||.|..+=+-. .+..--++..-+..-|-
T Consensus 254 ~mL~NE-RMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy 307 (517)
T KOG1500|consen 254 YMLVNE-RMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY 307 (517)
T ss_pred hhhhhH-HHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence 222222 223333445699999999886632 12333455555666664
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.01 Score=53.25 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=62.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEecccc-CC-CCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATR-RL-PYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~-~l-p~~~~sfDlI~s~~~ 83 (402)
.++.+||.+|-|-|.....+.++ .-.-++..+.-+ +.+...+-...-+.++..+.-+ -+ .++++.||-|+- ..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y-DT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY-DT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhcccccccceEEEecchHhhhccccccCcceeEe-ec
Confidence 46889999999999877666655 233456665322 2222222111111222222111 11 246788999994 44
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+-...+|...+.+.+.|+|||+|.+-+-.
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 44555678889999999999999987763
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=53.46 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=63.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC----CCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY----PSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~----~~~sfDlI~ 79 (402)
+++.+||-+|..+|....++.+- .|.++++++... ......|+++. +..-...|+. .|. --+.+|+|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVDVIF 148 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCC-ChHHhhcccccccEEE
Confidence 46789999999999877777642 688999998654 33446776663 2222333432 221 124899999
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+- + ..+++..-++.++...||+||.++++.
T Consensus 149 ~D-V--aQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 149 QD-V--AQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EE----SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec-C--CChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 75 3 223334667888889999999999984
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.011 Score=53.09 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=71.6
Q ss_pred eEEeccccchHHHHHHhhcCCC---ceEEEeccCCCCCChhhHHhcCccccccc--CCCCCCC-CC-CcccEEEEcccc-
Q 015704 257 NVLDMRAGFGGFAAALIEQKFD---CWVMNVVPVSGFNTLPVIYDRGLIGVMHD--WCEPFDT-YP-RTYDLLHAAGLF- 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~rg~~~~~~~--~~~~~~~-~~-~sfD~v~~~~~~- 328 (402)
.|+|+||-+|+.+..++++... |..+++.|.+....+... +| +++. ..+.+.. ++ ..+|+|.|...=
T Consensus 48 ~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~---d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~ 122 (205)
T COG0293 48 VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QG---DITDEDTLEKLLEALGGAPVDVVLSDMAPN 122 (205)
T ss_pred EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--ee---eccCccHHHHHHHHcCCCCcceEEecCCCC
Confidence 4999999999999988877333 677888888743222111 11 2211 0001111 33 346999864211
Q ss_pred -------ccccccCCHHHHHHHhh-hhccCCcEEEEEe-----ChhhHHHHHHHHHhcCceEEEeecCCC-CCCceEEEE
Q 015704 329 -------SVESKRCNMSTIMLEMD-RMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRETAEG-PHASYRILT 394 (402)
Q Consensus 329 -------~~~~~~~~~~~~l~e~~-RvLrpgG~~~~~~-----~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~l~ 394 (402)
.|..-- .+.....||. ++|+|||.|++.. .++.+..++..+++ +.+...... +..+|-+++
T Consensus 123 ~~g~~~~Dh~r~~-~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~----v~~~KP~aSR~~S~E~y~v 197 (205)
T COG0293 123 TSGNRSVDHARSM-YLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRK----VKIFKPKASRKRSREIYLV 197 (205)
T ss_pred cCCCccccHHHHH-HHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhce----eEEecCccccCCCceEEEE
Confidence 121110 1124444444 6999999999984 34445555555444 333332211 233588888
Q ss_pred EEe
Q 015704 395 ADK 397 (402)
Q Consensus 395 ~~k 397 (402)
|.+
T Consensus 198 ~~~ 200 (205)
T COG0293 198 AKG 200 (205)
T ss_pred Eec
Confidence 875
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0011 Score=56.05 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=41.7
Q ss_pred ccCCCCCCCCeeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 65 TRRLPYPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 65 ~~~lp~~~~sfDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
....+|.++|.|+|++..+..|+..+ ...++++++|.|||||++-++.+
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 35567899999999999888888755 36789999999999999999953
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0056 Score=55.49 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=62.9
Q ss_pred cceEEeccc--cchHHHHHH--hhcCCCceEEEeccCCCCCChhhHHhcCc---ccccccCC-CC----CCCCC-CcccE
Q 015704 255 LRNVLDMRA--GFGGFAAAL--IEQKFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWC-EP----FDTYP-RTYDL 321 (402)
Q Consensus 255 ~~~vLD~g~--g~G~~~~~l--~~~~~~~~~~~v~~~~~~~~~~~~~~rg~---~~~~~~~~-~~----~~~~~-~sfD~ 321 (402)
.++.||+|. ||+.++.+| -+.| .|.++++.+..-.-..++....|+ |..++..+ +. +..++ ++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dG-rv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDG-RVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCc-eEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 345999995 555555444 3455 355666665543334566666677 55555332 22 22245 89999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++.. | ++.+......+.-|+|||||.+++..
T Consensus 153 aFvD----a--dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFVD----A--DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEEc----c--chHHHHHHHHHHHhhcccccEEEEec
Confidence 9987 3 34456689999999999999999874
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.017 Score=54.25 Aligned_cols=91 Identities=16% Similarity=0.047 Sum_probs=58.4
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc------Cc----ccccccCCCCCCC-CCCccc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------GL----IGVMHDWCEPFDT-YPRTYD 320 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r------g~----~~~~~~~~~~~~~-~~~sfD 320 (402)
-+..++||=+|.|-|+.++.+.+..- .+..+.+| +..++.+.+- ++ +..+. + +.. .+++||
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID-~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---~~~~~~~~fD 141 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQAD-EKILDSFISFFPHFHEVKNNKNFTHAK-Q---LLDLDIKKYD 141 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECC-HHHHHHHHHHCHHHHHhhcCCCEEEee-h---hhhccCCcCC
Confidence 35678899999999999999999852 22333333 2333333331 12 11111 1 111 137899
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|+....+ .+.....+.|.|+|||.++...
T Consensus 142 VIIvDs~~--------~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 142 LIICLQEP--------DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEEEcCCC--------ChHHHHHHHHhcCCCcEEEECC
Confidence 99998532 2466788999999999999964
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0056 Score=57.05 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCCCCCChh----hHHhcCc---ccccccCC-CCCCC------CCCc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLP----VIYDRGL---IGVMHDWC-EPFDT------YPRT 318 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~~~~~~----~~~~rg~---~~~~~~~~-~~~~~------~~~s 318 (402)
+.++||++|+++|--+-+|+.. +.+..++.+... +...+ .....|+ |..++.-+ +-++. ++.+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 4567999999999877777653 111233333332 22232 3334465 33333211 11111 2368
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
||+|+... ++......+....+.|||||.+++-
T Consensus 157 fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99999982 2445567888888999999998876
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.061 Score=47.10 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=69.5
Q ss_pred cceEEeccccchHHHHHHhhc-CCCc--eEEEeccCCCCCChhhHHhcCc-cccc-ccCCCCCCCCCCcccEEEEccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQ-KFDC--WVMNVVPVSGFNTLPVIYDRGL-IGVM-HDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~-~~~~--~~~~v~~~~~~~~~~~~~~rg~-~~~~-~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
...+|++|||+|-.++.|++. +.++ ..++++|..-..++..|.-.+. +..+ .+....+. +++.|++...-=+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~--~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR--NESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc--cCCccEEEECCCcC
Confidence 334999999999999999887 2122 3444444433344444444433 1111 11111111 26666665542221
Q ss_pred cccccC------------------CHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecC
Q 015704 330 VESKRC------------------NMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 330 ~~~~~~------------------~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
--.+.| -+..+|.-+.-+|-|-|.|++---. -....+-++.++-.|.+.+....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEE
Confidence 111111 1235666777888999999886321 12444555778888887776554
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.027 Score=51.19 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCeEEEECCccchhHHHHc----cCCceEEeCCccchHHHHH-HHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCcc
Q 015704 11 LRVVMDAGCGVASFGAYLL----PRNVITMSIAPKDVHENQI-QFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~----~~~v~~vdi~~~~~~~a~~-~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+.+++|||+|.|.=+..|+ +.+++-+|....-. +.. ....+-++++ .+....++.+.-...-||+|.|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc-
Confidence 6899999999995554433 33676666655322 122 3344557774 4555566666532111999997533
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.+...++.-+...+|+||.++.-
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhh
Confidence 25567888889999999987544
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0063 Score=55.09 Aligned_cols=99 Identities=14% Similarity=0.067 Sum_probs=50.5
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHH--HHHH----HcCC---CcEEEeccccCCCCC---CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQI--QFAL----ERGA---PAMVAAFATRRLPYP---SQ 73 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~--~~a~----~~~~---~~~~~~~d~~~lp~~---~~ 73 (402)
+....+|+|||.|......+.. ..+|+++.+.-...+.. +..+ ..+. +..+..+|..+.++. -.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 5679999999999765444322 48899998754332221 1111 1122 112334443222211 13
Q ss_pred CeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEE
Q 015704 74 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 74 sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~ 110 (402)
..|+|++++.. +.++....+.+....||+|-.++-
T Consensus 122 ~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 122 DADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp C-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred CCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 46999998653 444566778888889998877654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.036 Score=54.35 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=54.7
Q ss_pred ceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcccccccCh-------HHHHHHHHHhcC
Q 015704 33 VITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCRINWTRDD-------GILLLEVNRMLR 103 (402)
Q Consensus 33 v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d~-------~~~l~e~~r~Lk 103 (402)
+.|+|+++.++..|. ..|+..|.. ..+.+.|+..++-+.+.+|+|+||...-.-..+. ..+.+.+.+.++
T Consensus 257 ~~G~Did~r~i~~Ak-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 257 IYGSDIDPRHIEGAK-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EEEecCCHHHHHHHH-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 569999998887665 667777765 3467778777765547899999986532211121 234556678888
Q ss_pred CCeEEEEEeC
Q 015704 104 AGGYFAWAAQ 113 (402)
Q Consensus 104 pgG~li~~~~ 113 (402)
--+.++|++.
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 8888988863
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0077 Score=59.86 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=54.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.|||++||+|.++..++.... +..|+.+| +++.++.+.+ .|+ +..++.-.+.+..-...||+|...- +
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~---~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETG---VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 599999999999999976521 11344554 3334433322 233 1122222111111135799999972 1
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
-.+..+|....+.+||||.+.+|-
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 123567777678899999999993
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.022 Score=56.47 Aligned_cols=113 Identities=19% Similarity=0.222 Sum_probs=67.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCC-----CCCCCC---CcccEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCE-----PFDTYP---RTYDLLH 323 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~-----~~~~~~---~sfD~v~ 323 (402)
.|||+=|-+|+|+.+.+..|+. .|+.+| +...++.+.+. |+-..-|.|-. -+..+. ..||+|+
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~----~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGAS----EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCC----ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 4999999999999999999983 455555 34455444433 44222222211 111122 3999999
Q ss_pred Ecc-ccccc-----cccCCHHHHHHHhhhhccCCcEEEEEeCh------hhHHHHHHHHHhc
Q 015704 324 AAG-LFSVE-----SKRCNMSTIMLEMDRMLRPGGHVYIRDSI------DVMDELQEIGKAM 373 (402)
Q Consensus 324 ~~~-~~~~~-----~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------~~~~~~~~~~~~~ 373 (402)
..- .|.-- .-..+...++....++|+|||.++++... +..+.+.+-+...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~ 357 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAA 357 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhc
Confidence 840 01110 00113458889999999999999999642 3344444544444
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.021 Score=55.46 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=74.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
..+.+|||+=||.|.++..++.. .|.++|++|..+.... +.++-++.... ...+|....+..-+.||-|+.+..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 45889999999999999887765 4899999997764443 55555555443 566777666655588999996532
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+...++....+.+++||.+.+-.+
T Consensus 266 -----~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 266 -----KSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred -----CcchhhHHHHHHHhhcCcEEEEEec
Confidence 2446788889999999999988754
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0015 Score=58.05 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=59.3
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEcccccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 332 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~ 332 (402)
-.++||+|+|-|.++..++..- -.|-+.+ +..|...-..++. +-...+|.+. .=.||+|.|-+++.--
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-----eevyATElS~tMr~rL~kk~ynVl~~~ew~~t----~~k~dli~clNlLDRc- 182 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-----EEVYATELSWTMRDRLKKKNYNVLTEIEWLQT----DVKLDLILCLNLLDRC- 182 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-----HHHHHHHhhHHHHHHHhhcCCceeeehhhhhc----CceeehHHHHHHHHhh-
Confidence 3569999999999998887541 1244444 3334433333333 2223344311 1259999999877532
Q ss_pred ccCCHHHHHHHhhhhccC-CcEEEEE
Q 015704 333 KRCNMSTIMLEMDRMLRP-GGHVYIR 357 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrp-gG~~~~~ 357 (402)
-++-.+|..++-+|+| .|.+|+.
T Consensus 183 --~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 183 --FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred --cChHHHHHHHHHHhccCCCcEEEE
Confidence 2367999999999999 9999998
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.023 Score=56.25 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=65.9
Q ss_pred CeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC-CCCCCCeeEEEecCcc
Q 015704 12 RVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL-PYPSQAFDLIHCSRCR 84 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~l-p~~~~sfDlI~s~~~~ 84 (402)
.+|||+.||+|..+...+.+ .|+++|+++....... +.++.++.. ..+...|...+ ......||+|....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 48999999999988877754 5899999987665443 444444443 33444454332 11235799998642
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
. ..+..++..+.+.+++||.+.++
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 1 24568999999999999999998
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.012 Score=51.92 Aligned_cols=68 Identities=21% Similarity=0.166 Sum_probs=40.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhH---HhcCcccccccCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVI---YDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~---~~rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.|+|+|||+|.++-..+-.|+. .|..|... +.+++++ .++++ +.+--.+.++..|..-||.|+..-=|
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD--~~a~ei~r~N~~~l~-g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGAS-RVLAVDID--PEALEIARANAEELL-GDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCc-EEEEEecC--HHHHHHHHHHHHhhC-CceEEEEcchhhcCCccceEEECCCC
Confidence 3999999999998888888752 33333333 2333332 23322 22222234556677889988886444
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0056 Score=52.38 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=48.9
Q ss_pred CCCCcccEEEEccccccc-----cccCCH---HHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHHHHHhc
Q 015704 314 TYPRTYDLLHAAGLFSVE-----SKRCNM---STIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGKAM 373 (402)
Q Consensus 314 ~~~~sfD~v~~~~~~~~~-----~~~~~~---~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~~~~~~ 373 (402)
.|+++||.+-|-++++|. .|+-++ ...+.++.|+|||||.+++.-+. +-..++-.++.+.
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gf 138 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGF 138 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCc
Confidence 377899999999999994 222222 47788889999999999999543 3355667777777
Q ss_pred CceEEE
Q 015704 374 GWHVTL 379 (402)
Q Consensus 374 ~w~~~~ 379 (402)
.|=-..
T Consensus 139 e~i~tf 144 (177)
T PF03269_consen 139 EWIDTF 144 (177)
T ss_pred EEEeee
Confidence 776553
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.027 Score=50.51 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=72.1
Q ss_pred HHH-HHHHHHHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCc------cccccc
Q 015704 235 KYW-NEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL------IGVMHD 307 (402)
Q Consensus 235 ~~w-~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~------~~~~~~ 307 (402)
-+| ..++..-.+.+.. +=++||.+|-|.|..+..+.+++. ..-.-+.+ .+..++.-.+-|- +-.-..
T Consensus 84 m~WEtpiMha~A~ai~t---kggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~--hp~V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 84 MRWETPIMHALAEAIST---KGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEA--HPDVLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhHHHHHHHHHHhh---CCceEEEeccchHHHHHHHhhcCC-cceEEEec--CHHHHHHHHhcccccccceEEEecc
Confidence 356 3455544444332 334599999999999999888863 22222222 2334444444333 323335
Q ss_pred CCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 308 WCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 308 ~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|-..+++.| .+||-|+-.-.=+|.++ +-..-..+-|+|||||.|..=.
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e~yEd---l~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSELYED---LRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHhhhccccccCcceeEeechhhHHHH---HHHHHHHHhhhcCCCceEEEec
Confidence 655667888 79999988744356553 4567778889999999998763
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.037 Score=54.69 Aligned_cols=110 Identities=14% Similarity=0.235 Sum_probs=63.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCC-CCC-------------
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPF-DTY------------- 315 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~-~~~------------- 315 (402)
.|||++||+|+|+..|++... .|+++| ++.+++.+.+. |+ +..+..-.+.+ ..+
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~-----~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFR-----RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred eEEEEeccccHHHHHHHhhCC-----EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 499999999999999987754 455555 34555444432 43 22222111111 001
Q ss_pred --CCcccEEEEccccccccccCCH-HHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHhcCceEEEeec
Q 015704 316 --PRTYDLLHAAGLFSVESKRCNM-STIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 316 --~~sfD~v~~~~~~~~~~~~~~~-~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~ 382 (402)
...||+|+.. +++.++ +.++.- +.+|++.++++=+... .+.+..+.+ .|++...+-
T Consensus 284 ~~~~~~D~v~lD------PPR~G~~~~~l~~---l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~~v~~ 343 (362)
T PRK05031 284 LKSYNFSTIFVD------PPRAGLDDETLKL---VQAYERILYISCNPETLCENLETLSQ--THKVERFAL 343 (362)
T ss_pred ccCCCCCEEEEC------CCCCCCcHHHHHH---HHccCCEEEEEeCHHHHHHHHHHHcC--CcEEEEEEE
Confidence 1158999987 444332 344433 3458999999965544 444555543 688776543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.059 Score=45.64 Aligned_cols=94 Identities=17% Similarity=0.074 Sum_probs=55.7
Q ss_pred CCCCeEEEECCccchhHHHHcc-----C---CceEEeCCccchHHHHHHHHHHcC--C-C-cEEEeccccCCCCCCCCee
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----R---NVITMSIAPKDVHENQIQFALERG--A-P-AMVAAFATRRLPYPSQAFD 76 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~---~v~~vdi~~~~~~~a~~~~a~~~~--~-~-~~~~~~d~~~lp~~~~sfD 76 (402)
.+..+|+|+|||.|.++..|+. . .|+++|..+.....+. ..+++.+ . . ..+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4567999999999999988887 3 7899999886654443 4443333 1 1 112222222111 134566
Q ss_pred EEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~ 111 (402)
+++. +|-..++ ..+++...+ ++-.+++.
T Consensus 102 ~~vg----LHaCG~Ls~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVG----LHACGDLSDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEE----eecccchHHHHHHHHHH---cCCCEEEE
Confidence 6663 6777776 455665555 55555444
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0058 Score=58.56 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=40.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.|||+|||.|.++..|++++. .|+++| ++.+++.+.++ ++ +..++. ++..++ ..||+|+++
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~~~-----~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~---Dal~~~~~~~d~VvaN 108 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQLAK-----KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG---DALKTEFPYFDVCVAN 108 (294)
T ss_pred EEEEecCchHHHHHHHHHhCC-----cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC---CHhhhcccccCEEEec
Confidence 599999999999999999875 455555 34555544432 22 334443 223344 578998876
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.02 Score=50.94 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=56.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh--hHHhc-----Cc---ccccccCCCCCCCCCCcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP--VIYDR-----GL---IGVMHDWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~--~~~~r-----g~---~~~~~~~~~~~~~~~~sfD~v~~~ 325 (402)
.+-|||||||++...|+....+...+...-.+ .++.++ +-..| |- +++++..+--+ .|+-|-.-..+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kgqLs 140 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKGQLS 140 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhcccc
Confidence 48999999999999999887655444444433 133332 11111 11 45555544222 23444433332
Q ss_pred cccccccccC---------CH-HHHHHHhhhhccCCcEEEEEeCh
Q 015704 326 GLFSVESKRC---------NM-STIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 326 ~~~~~~~~~~---------~~-~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
-.|--.+|.. -+ ...|.|..=+||+||.++.....
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 2222211110 00 27888999999999999876543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.063 Score=51.98 Aligned_cols=121 Identities=18% Similarity=0.141 Sum_probs=71.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cccc--ccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIG--VMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~--~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||==||+|+|.-...-.|+ ++.+.| ...|+.-|... |+-. .+..+.-...+++ ++||.|.|.-=.
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~-----~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGA-----RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred EeecCcCCccHHHHhhhhcCc-----eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 399999999999988877777 677766 34555433211 2211 1112111224478 679999995211
Q ss_pred ccc--cccC----CHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeec
Q 015704 329 SVE--SKRC----NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 329 ~~~--~~~~----~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
--. .... ...++|.++.++|||||++++--+....+...+.-.++.-++....|
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~~~f~v~~~~~~~~H 334 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEELGFKVLGRFTMRVH 334 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhhcCceEEEEEEEeec
Confidence 100 0111 24588999999999999999988854455544444333333333443
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.051 Score=53.74 Aligned_cols=78 Identities=17% Similarity=0.263 Sum_probs=43.6
Q ss_pred CCeEEEECCccchhHHHHccC-------------------CceEEeCCccchHHHHHHHHHH-------------cCCCc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR-------------------NVITMSIAPKDVHENQIQFALE-------------RGAPA 58 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~-------------------~v~~vdi~~~~~~~a~~~~a~~-------------~~~~~ 58 (402)
..+|+|+|||+|.++..+... ++.--|+-..|........... .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 558999999999666443211 3444566666665444332210 01111
Q ss_pred EEEec---cccCCCCCCCCeeEEEecCccccccc
Q 015704 59 MVAAF---ATRRLPYPSQAFDLIHCSRCRINWTR 89 (402)
Q Consensus 59 ~~~~~---d~~~lp~~~~sfDlI~s~~~~~~~~~ 89 (402)
.+..+ ..-.--||.++.++++|+.+ +||..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeecc-ceecc
Confidence 22221 12222378999999998765 78865
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.057 Score=51.20 Aligned_cols=143 Identities=22% Similarity=0.369 Sum_probs=86.7
Q ss_pred hHHhhHHHHHHHHHHHHhcccC---CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh------------
Q 015704 230 FKAESKYWNEIIESYVRALHWK---KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL------------ 293 (402)
Q Consensus 230 ~~~~~~~w~~~~~~y~~~~~~~---~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~------------ 293 (402)
..+.....+..++.-...++.. ..+++ ||==|||.|+.+-.|+..|+.+. +.+ +--|+
T Consensus 124 ~~ERd~~ykpii~~l~~lfp~~~~~r~ki~-iLvPGaGlGRLa~dla~~G~~~q-----GNEfSy~Mli~S~FiLN~~~~ 197 (369)
T KOG2798|consen 124 QRERDQLYKPIIEELNSLFPSRGKERTKIR-ILVPGAGLGRLAYDLACLGFKCQ-----GNEFSYFMLICSSFILNYCKQ 197 (369)
T ss_pred chhhhhhhhhHHHHHHhhCCCccccccCce-EEecCCCchhHHHHHHHhccccc-----ccHHHHHHHHHHHHHHHhhcc
Confidence 3455555666666666555532 12332 89999999999999998886332 111 11111
Q ss_pred ---------------hhHHhcCc----ccccccC------------CCCCCC-CC-C----cccEEEEccccccccccCC
Q 015704 294 ---------------PVIYDRGL----IGVMHDW------------CEPFDT-YP-R----TYDLLHAAGLFSVESKRCN 336 (402)
Q Consensus 294 ---------------~~~~~rg~----~~~~~~~------------~~~~~~-~~-~----sfD~v~~~~~~~~~~~~~~ 336 (402)
+..++-+| +..+|.+ +-+|.. |+ . +||+|..--++-. ..+
T Consensus 198 ~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT---a~N 274 (369)
T KOG2798|consen 198 ENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT---AHN 274 (369)
T ss_pred CCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec---hHH
Confidence 11122222 3333333 122222 34 2 6998887744433 336
Q ss_pred HHHHHHHhhhhccCCcEEEEE--------eC--------hh-hHHHHHHHHHhcCceEEEee
Q 015704 337 MSTIMLEMDRMLRPGGHVYIR--------DS--------ID-VMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 337 ~~~~l~e~~RvLrpgG~~~~~--------~~--------~~-~~~~~~~~~~~~~w~~~~~~ 381 (402)
+-+.|.-|..+|||||++|=- |. .+ ..+.+..+++.+.|.+....
T Consensus 275 ileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 275 ILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 789999999999999998844 21 11 26788889999999998765
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.015 Score=57.20 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=55.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC----------------CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL----------------PY 70 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~l----------------p~ 70 (402)
.+.+|||+-||.|.++..|++. .|+|+|+++.++..+. ..++.+++.+. +...+.+++ ..
T Consensus 196 ~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~ 274 (352)
T PF05958_consen 196 SKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDL 274 (352)
T ss_dssp -TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-G
T ss_pred CCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhh
Confidence 3348999999999999999886 8999999998876665 66666676654 443332221 11
Q ss_pred CCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 71 ~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
....+|+|+.-..---.. ..++..+. ++.=++++|+.
T Consensus 275 ~~~~~d~vilDPPR~G~~---~~~~~~~~---~~~~ivYvSCn 311 (352)
T PF05958_consen 275 KSFKFDAVILDPPRAGLD---EKVIELIK---KLKRIVYVSCN 311 (352)
T ss_dssp GCTTESEEEE---TT-SC---HHHHHHHH---HSSEEEEEES-
T ss_pred hhcCCCEEEEcCCCCCch---HHHHHHHh---cCCeEEEEECC
Confidence 233689988532211111 23444443 34567777753
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.018 Score=51.47 Aligned_cols=96 Identities=8% Similarity=0.056 Sum_probs=53.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCC-CCCCCC--C-CcccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWC-EPFDTY--P-RTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~-~~~~~~--~-~sfD~v~~ 324 (402)
.|||++||+|.++-.++++|+. .|+.+| ++..++.+.+ -|+ +..+..-. +.+..+ . ..||+|+.
T Consensus 52 ~vLDLfaGsG~lglea~srga~----~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSRGAK----VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred EEEEecCCCcHHHHHHHhCCCC----EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 5999999999999999999863 345554 2333332222 122 11222111 111112 1 24899888
Q ss_pred ccccccccccCCHHHHHHHh--hhhccCCcEEEEEeCh
Q 015704 325 AGLFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDSI 360 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~--~RvLrpgG~~~~~~~~ 360 (402)
.-=+.. .....++.-+ ..+|++||.+++....
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 644432 1123333333 4589999999997554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.027 Score=53.49 Aligned_cols=116 Identities=9% Similarity=0.047 Sum_probs=69.8
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCC-------------CCCCCCCCc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWC-------------EPFDTYPRT 318 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~-------------~~~~~~~~s 318 (402)
.+..++||=+|-|.|+.++.+.+.+ ++.-+-++.+| +..+..+++. .+..+..+ +-+..++++
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID-~~Vi~~ar~~--l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~ 149 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEID-PAVIELARKY--LPEPSGGADDPRVEIIIDDGVEFLRDCEEK 149 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcC-HHHHHHHHHh--ccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence 4455799999999999999999986 24333333333 3344444332 11121111 111224569
Q ss_pred ccEEEEccccccccccCCH------HHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCce
Q 015704 319 YDLLHAAGLFSVESKRCNM------STIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWH 376 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~------~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~ 376 (402)
||+|++... |...+ ........|.|+|+|.++..... +....+.+..+++.+.
T Consensus 150 fDvIi~D~t-----dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 150 FDVIIVDST-----DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred CCEEEEcCC-----CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 999999821 11122 58889999999999999998211 2344555556666333
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.14 Score=46.89 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=63.8
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC---CCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~-~~d~~~lp---~~~~sfDlI~s~ 81 (402)
-++..+||+|+-||.|+..++++ .|.++|+.-..++... +........ ..++..+. +. +..|+++|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 46789999999999999999877 7999998876553322 222222221 12222221 22 367899975
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
-++. .....|..+..+++|+|.++.-.
T Consensus 152 vSFI----SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 152 VSFI----SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred eehh----hHHHHHHHHHHhcCCCceEEEEe
Confidence 4322 45789999999999999988764
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.048 Score=52.77 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.3
Q ss_pred CCCcceEEeccccchHHHHHHhhc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQ 275 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~ 275 (402)
.+.-.+|||||||.|.+...|+.+
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~ 135 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVH 135 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhh
Confidence 344456999999999998888776
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.066 Score=47.38 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=54.9
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccch-------HHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDV-------HENQIQFALERGAPAM-VAAFATRRLPYPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~-------~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDl 77 (402)
+++.+|+|+=.|.|.+++.+... .-......+.++ ...+...+++....+. ......-.++ +.+..|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 46789999999999999988764 111222233222 1111122222221111 1111222222 3344555
Q ss_pred EEecCc-------ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 78 IHCSRC-------RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 78 I~s~~~-------~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++.+.. .+| .....++..++++.|||||.+.+..+
T Consensus 126 ~~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 126 VPTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 553221 122 22347889999999999999999854
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.048 Score=48.21 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=65.9
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCCC--CCCh------hhHHhcCc--ccccccCCCCCCCCCC
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG--FNTL------PVIYDRGL--IGVMHDWCEPFDTYPR 317 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~--~~~~------~~~~~rg~--~~~~~~~~~~~~~~~~ 317 (402)
++..+. +|.|+=-|.|-|++-|+.. |....|.++.|.+. .... ..+++.+. +..+..-.-++. -|+
T Consensus 45 Glkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 45 GLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred ccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence 344443 3999999999999998765 44448899999874 2111 23333332 222221111212 236
Q ss_pred cccEEEEccccccccc----cCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 318 TYDLLHAAGLFSVESK----RCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~----~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
-.|++..+++.+-++. .....++-.++.+.|||||.+.+-|
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 6777766544433221 2345689999999999999999986
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.016 Score=49.64 Aligned_cols=105 Identities=12% Similarity=0.221 Sum_probs=58.2
Q ss_pred CCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCC-CcEEEec----c--ccCCCCCCCCeeEE
Q 015704 11 LRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA-PAMVAAF----A--TRRLPYPSQAFDLI 78 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~----d--~~~lp~~~~sfDlI 78 (402)
+.+||++|.|--.++..+... .|...|-+...+ ...+..+..+. .....+. . ..........||.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv--rnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV--RNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH--HHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 468999999965555444433 344444433222 22222222210 0001110 0 11112234689999
Q ss_pred EecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 79 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
+|+.+ ..+.+....+.+.+.++|+|.|..++..|-...+
T Consensus 108 laADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~s 146 (201)
T KOG3201|consen 108 LAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQS 146 (201)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccch
Confidence 99988 4455445788999999999999988875433333
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.027 Score=53.70 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=65.2
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEe-ccccCC-C-CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAA-FATRRL-P-YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~-~d~~~l-p-~~~~sfDlI~s 80 (402)
.++.+|||++++.|.=+.++++. .+++.|++..-+.... ...++.|....... .|.... + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 46779999999999766555542 6889999886553333 44555566555333 443333 1 22346999995
Q ss_pred ----cCcccccccC------------------hHHHHHHHHHhc----CCCeEEEEEeC
Q 015704 81 ----SRCRINWTRD------------------DGILLLEVNRML----RAGGYFAWAAQ 113 (402)
Q Consensus 81 ----~~~~~~~~~d------------------~~~~l~e~~r~L----kpgG~li~~~~ 113 (402)
+.. -.+..+ ..+.|+.+.+.+ ||||+++.+|-
T Consensus 163 DaPCSg~-G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 163 DAPCSGL-GTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp ECSCCCG-GGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCCccch-hhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 211 111111 136788999999 99999999973
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.04 Score=48.77 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=61.3
Q ss_pred eEEeccccchHHHHHHhhcCCCce------EEEeccCC-CCCChhhHHh----cCc---ccccccCCCCCCCCCCcccEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCW------VMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWCEPFDTYPRTYDLL 322 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~------~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~~~~~~~~~sfD~v 322 (402)
.|||-=||+|++.-.-+..+.++. ...+.+.| .+++++.+.+ .|+ +.....-...++..+.++|.|
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~I 110 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAI 110 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEE
T ss_pred EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEE
Confidence 499999999999855443333222 01133444 3344433322 244 222322223334223799999
Q ss_pred EEcccccc-ccc----cCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEee
Q 015704 323 HAAGLFSV-ESK----RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 323 ~~~~~~~~-~~~----~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
+|.-=+-. +.. ..-...++.|+.|+|+|...++++..... ++.+..-.|+.....
T Consensus 111 vtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~~~~ 170 (179)
T PF01170_consen 111 VTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKRKLY 170 (179)
T ss_dssp EEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEEEEE
T ss_pred EECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceEEEE
Confidence 99722211 010 01123778999999999666666665533 344444466665443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.015 Score=55.63 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=30.6
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHH
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHEN 46 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a 46 (402)
.++..++|.+||.|..+..+++. .|+|+|.++.++..+
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~a 60 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAA 60 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHH
Confidence 45679999999999999888765 589999988766444
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.037 Score=48.05 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=42.5
Q ss_pred CeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC-C-CCCCC-eeEEEecC
Q 015704 12 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL-P-YPSQA-FDLIHCSR 82 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~l-p-~~~~s-fDlI~s~~ 82 (402)
..|+|+.||.|..+.+++.. .|+++|+++.-+.-++ ..++-.|.. ..+..+|..++ + +.... ||+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 36999999999999999987 7999999987665444 556556643 34566664332 1 12222 89999763
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.061 Score=46.47 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=63.8
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc--CcccccccCCCC----CCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR--GLIGVMHDWCEP----FDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r--g~~~~~~~~~~~----~~~~~-~sfD~v~~~~~~ 328 (402)
.||.+|.|+|-|+.++.++|. ..-+++.++ +++....-.++ | +.++...... +..++ .-||.|+|.-=+
T Consensus 51 pVlElGPGTGV~TkaIL~~gv--~~~~L~~iE~~~dF~~~L~~~~p~-~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 51 PVLELGPGTGVITKAILSRGV--RPESLTAIEYSPDFVCHLNQLYPG-VNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred eeEEEcCCccHhHHHHHhcCC--CccceEEEEeCHHHHHHHHHhCCC-ccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 499999999999999999974 666777776 33333222211 1 2122222222 23456 799999998655
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
..++-. --..+|.+..--|++||-++.=
T Consensus 128 l~~P~~-~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 128 LNFPMH-RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccCcHH-HHHHHHHHHHHhcCCCCeEEEE
Confidence 544421 2258899999999999998854
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.013 Score=46.93 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=37.1
Q ss_pred ccEEEEccccc--ccccc-CCHHHHHHHhhhhccCCcEEEEEeC--------hhhHHHHHHHHHhcCce
Q 015704 319 YDLLHAAGLFS--VESKR-CNMSTIMLEMDRMLRPGGHVYIRDS--------IDVMDELQEIGKAMGWH 376 (402)
Q Consensus 319 fD~v~~~~~~~--~~~~~-~~~~~~l~e~~RvLrpgG~~~~~~~--------~~~~~~~~~~~~~~~w~ 376 (402)
||+|.|-+|-. ||..- +.+...+..|.+.|||||.||+--. ......+.+-+++|.++
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lr 70 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLR 70 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEC
Confidence 89999988764 54321 3567899999999999999999832 12245566666666665
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.15 Score=48.19 Aligned_cols=102 Identities=11% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCCeEEEECCccchhHHHHcc-C-----CceEEeCCccchHHHHHHHHH-Hc--CCCcEEEeccccCCCCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-R-----NVITMSIAPKDVHENQIQFAL-ER--GAPAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-~-----~v~~vdi~~~~~~~a~~~~a~-~~--~~~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
.+.+|+=||||.=-++..+.. . .+.++|+++.....+. +... .. +....+...|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 456999999998765554443 2 4678899887665543 2222 11 22334666666555555568999996
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....-.-..+..+.+.++.+.++||..+++.+
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 54322222255899999999999999999985
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.17 Score=47.25 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=62.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCC--CCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPY--PSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~--~~~sfDlI~ 79 (402)
.++.+|+|-|.|+|+++.++++. ++...|+...-...+..++ ++.++. ..+...|+....| .+..+|.|+
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEeecccCCccccccccceEE
Confidence 47789999999999988877764 6777777554333333222 233432 2244445444443 356799998
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.- ++ .|-.++..++.+||.+|.-+++
T Consensus 183 LD-----lP-aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 183 LD-----LP-APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred Ec-----CC-ChhhhhhhhHHHhhhcCceEEe
Confidence 43 22 5677888888899998865555
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.066 Score=53.82 Aligned_cols=98 Identities=14% Similarity=0.266 Sum_probs=66.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-----cccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----LIGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-----~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
.+|=+|||--.+..+|-+.|+. +|+-+| ++-.+.....++ ...+...- -.-..|+ +|||+|..-+.+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~----dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d-~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE----DITNIDSSSVVVAAMQVRNAKERPEMQMVEMD-MDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC----CceeccccHHHHHHHHhccccCCcceEEEEec-chhccCCCcceeEEEecCccc
Confidence 6999999999999999999873 666666 344444444443 22111111 1125588 8999999998888
Q ss_pred cccccC-------CHHHHHHHhhhhccCCcEEEEEeC
Q 015704 330 VESKRC-------NMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 330 ~~~~~~-------~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++.... .....+.|+.|+|+|||.++.=.-
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 864221 123678999999999999776543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.084 Score=51.57 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=38.3
Q ss_pred CCCeEEEECCccchhHHHHccC--------------------CceEEeCCccchHHHHHHHHHHc----CCCcEEEe---
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--------------------NVITMSIAPKDVHENQIQFALER----GAPAMVAA--- 62 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--------------------~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~--- 62 (402)
..-+|+|+||.+|..+..+.+. ++.--|+-..|.+.-........ .....+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 3458999999999776544321 34455777777654443222110 12233322
Q ss_pred ccccCCCCCCCCeeEEEecCcccccc
Q 015704 63 FATRRLPYPSQAFDLIHCSRCRINWT 88 (402)
Q Consensus 63 ~d~~~lp~~~~sfDlI~s~~~~~~~~ 88 (402)
+..-.--||+++.|+++|+.+ +||.
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~a-lHWL 120 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYA-LHWL 120 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-
T ss_pred chhhhccCCCCceEEEEEech-hhhc
Confidence 222333378999999998765 7774
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.025 Score=48.47 Aligned_cols=121 Identities=17% Similarity=0.312 Sum_probs=72.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC--CCCChhhHHhcCc--------ccccccCCCCCCCCC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS--GFNTLPVIYDRGL--------IGVMHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~--~~~~~~~~~~rg~--------~~~~~~~~~~~~~~~-~sfD~v~~ 324 (402)
+.||.+|.|+=+.+--|....+++..+-++.-. +-..++-+..+.. +--.|.| .+.+... ++||+|.|
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEEe
Confidence 669999999999998887775544333333221 1123333333332 1011122 1223234 69999999
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEe
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~ 380 (402)
+.-+=.-+. .++++.-|.+.|||-|..++..|. +.+.+....+......+...
T Consensus 110 ADClFfdE~---h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 110 ADCLFFDEH---HESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred ccchhHHHH---HHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEec
Confidence 954433222 268888999999999999998764 45666666666665555544
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.022 Score=54.43 Aligned_cols=77 Identities=17% Similarity=0.065 Sum_probs=49.9
Q ss_pred hcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCCCCCC-C---
Q 015704 247 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYP-R--- 317 (402)
Q Consensus 247 ~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~~~~~-~--- 317 (402)
.+....+. .++|.+||.|+++..+++... ....|.++| .+.+++.+.++- -+..+|+....+..+. .
T Consensus 14 ~L~~~pg~--~vlD~TlG~GGhS~~il~~~~--~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 14 ALAIKPDG--IYVDGTFGGGGHSRAILERLG--PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred hhCCCCCC--EEEEeCcCChHHHHHHHHhCC--CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCC
Confidence 33444443 599999999999999998731 123677777 577777776542 2555665554443332 3
Q ss_pred cccEEEEccc
Q 015704 318 TYDLLHAAGL 327 (402)
Q Consensus 318 sfD~v~~~~~ 327 (402)
+||.|++..-
T Consensus 90 ~vDgIl~DLG 99 (296)
T PRK00050 90 KVDGILLDLG 99 (296)
T ss_pred ccCEEEECCC
Confidence 7998887543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.086 Score=51.01 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=58.9
Q ss_pred eEEeccccchHHHHHHhh----cCCCceEEEeccCC-CCCChhhHHhcC------------cccccccCCCCCCC--CCC
Q 015704 257 NVLDMRAGFGGFAAALIE----QKFDCWVMNVVPVS-GFNTLPVIYDRG------------LIGVMHDWCEPFDT--YPR 317 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~----~~~~~~~~~v~~~~-~~~~~~~~~~rg------------~~~~~~~~~~~~~~--~~~ 317 (402)
.++|+|||.|.=...|.+ .+ .....+|+| +...|+.+..+- +.+.+.+-.+-++. .+.
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~---~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQK---KSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcC---CCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 599999999986654433 32 124678888 556676554431 12222221111111 123
Q ss_pred cccEEEE-ccccccccccCCHHHHHHHhhh-hccCCcEEEEE
Q 015704 318 TYDLLHA-AGLFSVESKRCNMSTIMLEMDR-MLRPGGHVYIR 357 (402)
Q Consensus 318 sfD~v~~-~~~~~~~~~~~~~~~~l~e~~R-vLrpgG~~~~~ 357 (402)
...++.. .+.|-+..+ ......|.+|.+ .|+|||.++|.
T Consensus 156 ~~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSR-PEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCH-HHHHHHHHHHHHhhCCCCCEEEEe
Confidence 3455444 457777663 345689999999 99999999997
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.028 Score=54.00 Aligned_cols=99 Identities=22% Similarity=0.291 Sum_probs=57.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceE--EEeccCCCCCChh---hHHhcCcccccccCC-----CCCCCCC--CcccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWV--MNVVPVSGFNTLP---VIYDRGLIGVMHDWC-----EPFDTYP--RTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~--~~v~~~~~~~~~~---~~~~rg~~~~~~~~~-----~~~~~~~--~sfD~v~~ 324 (402)
.|||+|.|+|+-+-++-+ +|- -+++-++.+..+. ...++.+...-.+|. ++-+++| .+|++++.
T Consensus 116 siLDvG~GPgtgl~A~n~----i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 116 SILDVGAGPGTGLWALND----IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred hhhccCCCCchhhhhhcc----cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 399999999976665532 230 1111122122221 111222211112221 2234566 69999998
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+=|.|-...-.+...+.-..-++.|||.++|-++
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 88777755443455678888899999999999875
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.029 Score=49.30 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=59.7
Q ss_pred CeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc----CCCc-EEEeccccCCCCCCCCeeEEEecCcc
Q 015704 12 RVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER----GAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~----~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
..+.|+|+|+|.++...+.. +|++++.++.-. ..+.++ +..+ .+..+|+....| +..|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 57899999999876555443 899999887532 333333 3223 356667777666 568999985321
Q ss_pred cccc-cChHHHHHHHHHhcCCCeEEEE
Q 015704 85 INWT-RDDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 85 ~~~~-~d~~~~l~e~~r~LkpgG~li~ 110 (402)
-.+. +.....++.+...||-++.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 1112 1235678888888898887754
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.16 Score=50.38 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.6
Q ss_pred CC-CcccEEEEcccccccc
Q 015704 315 YP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 315 ~~-~sfD~v~~~~~~~~~~ 332 (402)
|| +|.+++|++..++-+.
T Consensus 158 fP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred cCCCceEEEEeeccceecc
Confidence 78 8999999999887654
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.21 Score=49.38 Aligned_cols=112 Identities=13% Similarity=0.220 Sum_probs=67.5
Q ss_pred CCCCCeEEEECCccchhHHHHcc----C-CceEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC---CCCCCeeEE
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLP----R-NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLI 78 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~----~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~-~~d~~~lp---~~~~sfDlI 78 (402)
++++.||||+.+..|.=+.+++. . .+.+.|.+..-+. .....+.+-|..+.+. ..|...+| ++. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~-~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLK-SLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHH-HHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 45788999999999954433332 3 5667776654442 2235555667666543 34555544 444 89999
Q ss_pred Ee----cCcccc-------cccC----------hHHHHHHHHHhcCCCeEEEEEeCCCCCChHH
Q 015704 79 HC----SRCRIN-------WTRD----------DGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 121 (402)
Q Consensus 79 ~s----~~~~~~-------~~~d----------~~~~l~e~~r~LkpgG~li~~~~~~~~~~~e 121 (402)
+. +..-.- +... ..++|.....++++||+|+.||-.......|
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENE 380 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhH
Confidence 83 331111 1110 1367788889999999999997433333333
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.26 Score=41.57 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=48.1
Q ss_pred ceEEeCCccchHHHHHHHHHHcCC-C-cEEEeccccCCC--CCCCCeeEEEecCcccccccC-----h---HHHHHHHHH
Q 015704 33 VITMSIAPKDVHENQIQFALERGA-P-AMVAAFATRRLP--YPSQAFDLIHCSRCRINWTRD-----D---GILLLEVNR 100 (402)
Q Consensus 33 v~~vdi~~~~~~~a~~~~a~~~~~-~-~~~~~~d~~~lp--~~~~sfDlI~s~~~~~~~~~d-----~---~~~l~e~~r 100 (402)
|.+.|+....+......... .+. . ..+...+-+.+. .+.+++|+++.|...+.-.+. + -.+++.+.+
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~-~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEE-AGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHH-TT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHh-cCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 67888888777655533333 333 2 233443333333 233589999988665554321 1 367899999
Q ss_pred hcCCCeEEEEEeCCCCCC
Q 015704 101 MLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 101 ~LkpgG~li~~~~~~~~~ 118 (402)
+|+|||.+.+..-++...
T Consensus 81 lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp HEEEEEEEEEEE--STCH
T ss_pred hhccCCEEEEEEeCCCCC
Confidence 999999999997555444
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.17 Score=44.52 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=66.9
Q ss_pred eEEeccccchHHHHHHhhcC-CC--ceEEEeccCCCCCChhhHHhcCc--ccccccCCCCCCCCC-CcccEEEEccc---
Q 015704 257 NVLDMRAGFGGFAAALIEQK-FD--CWVMNVVPVSGFNTLPVIYDRGL--IGVMHDWCEPFDTYP-RTYDLLHAAGL--- 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~-~~--~~~~~v~~~~~~~~~~~~~~rg~--~~~~~~~~~~~~~~~-~sfD~v~~~~~--- 327 (402)
+|||+||.+|+...--.++- .+ |..+++.++....-..+....-+ ...+....|+ .| +-.|+|.+.-.
T Consensus 72 ~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~---lp~r~VdvVlSDMapna 148 (232)
T KOG4589|consen 72 TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEA---LPNRPVDVVLSDMAPNA 148 (232)
T ss_pred EEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHh---CCCCcccEEEeccCCCC
Confidence 49999999999887766651 11 24444444432211111100000 0011111233 35 78899988621
Q ss_pred -----ccccc--ccCCHHHHHHHhhhhccCCcEEEEE-----eChhhHHHHHHHHHhcCceEEEeecC-CCCCCceEEEE
Q 015704 328 -----FSVES--KRCNMSTIMLEMDRMLRPGGHVYIR-----DSIDVMDELQEIGKAMGWHVTLRETA-EGPHASYRILT 394 (402)
Q Consensus 328 -----~~~~~--~~~~~~~~l~e~~RvLrpgG~~~~~-----~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~l~ 394 (402)
..|.. +.| ..+|.=---.++|+|.|++. +.......|+..+..++ ..+.+ .-..-.|.+|+
T Consensus 149 TGvr~~Dh~~~i~LC--~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk----~vKP~Asr~eS~E~y~v 222 (232)
T KOG4589|consen 149 TGVRIRDHYRSIELC--DSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVK----KVKPDASRDESAETYLV 222 (232)
T ss_pred cCcchhhHHHHHHHH--HHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcE----eeCCccccccccceeee
Confidence 11211 122 13333334567899999998 34455666666655443 11111 11223589999
Q ss_pred EEe
Q 015704 395 ADK 397 (402)
Q Consensus 395 ~~k 397 (402)
|.+
T Consensus 223 ~~~ 225 (232)
T KOG4589|consen 223 CLN 225 (232)
T ss_pred eee
Confidence 976
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.074 Score=47.38 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=23.1
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAP 40 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~ 40 (402)
..+.|||||.|.+...|... .+.|++|--
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~ 94 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD 94 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhH
Confidence 46899999999998888765 577777644
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.067 Score=47.95 Aligned_cols=89 Identities=22% Similarity=0.290 Sum_probs=53.4
Q ss_pred EEeccccchHHHHHHhhc-CCCceEEEeccCCC-CCChhhH----------------HhcCcccccccCCCCCCCCC--C
Q 015704 258 VLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVI----------------YDRGLIGVMHDWCEPFDTYP--R 317 (402)
Q Consensus 258 vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~-~~~~~~~----------------~~rg~~~~~~~~~~~~~~~~--~ 317 (402)
.||+|.|+|..++.++-. |. ...+..+++- ++.++.+ +++|-+..+-.-|- --|+ +
T Consensus 86 ~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr--~g~~e~a 161 (237)
T KOG1661|consen 86 FLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR--KGYAEQA 161 (237)
T ss_pred eeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc--ccCCccC
Confidence 999999999888777622 22 2223355552 3333222 23333222222221 1144 6
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
-||.|||- .....+.+|+--.|+|||.+++---
T Consensus 162 ~YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 162 PYDAIHVG---------AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CcceEEEc---------cCccccHHHHHHhhccCCeEEEeec
Confidence 99999998 1235777888889999999998643
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.014 Score=46.67 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=36.2
Q ss_pred EEECCccchhHHHHccC-------CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccC-CC-CCCCCeeEEEecCc
Q 015704 15 MDAGCGVASFGAYLLPR-------NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRR-LP-YPSQAFDLIHCSRC 83 (402)
Q Consensus 15 LDiGcG~G~~~~~L~~~-------~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~-lp-~~~~sfDlI~s~~~ 83 (402)
||+|+..|..+..+++. .++++|..+. .+...+..++.+. ...+...+... ++ ++.++||+|+.- .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD-g 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID-G 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE-S
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC-C
Confidence 68999999877766653 4788888774 1111122322222 23344444221 21 235789999954 3
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
-|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 232234567889999999999999874
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.093 Score=49.80 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=42.2
Q ss_pred CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChH--------HHHHHHHHHHhhhhhcceeeee
Q 015704 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEE--------AQEEHWKEMLDLTTRLCWELVK 142 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~--------el~~~~~~~~~~~~~~~~~~~~ 142 (402)
++||+|+.. .++.-..+.-..+..+..+|||||+++=..|..++... .+.-...++..+.+..+|....
T Consensus 258 ~~~d~VvTc-fFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTC-FFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEE-EEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 469999864 23444445678999999999999998876543322211 2222344455555555555554
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.21 Score=48.52 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=62.1
Q ss_pred CCCCeEEEECCc-cchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG-~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+++++|+=+|+| .|..+..+++. +|+++|.++ ...+.+++-+....+...+.+..+--.+.||+|+.. +
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~-----~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t-v- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE-----EKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT-V- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh-----HHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-C-
Confidence 467899999888 33566666653 788888775 344677777665554432222222112349999954 2
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
. ...+....+.||+||.+++...+
T Consensus 238 -----~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -----G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 56788899999999999999655
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.11 Score=48.92 Aligned_cols=86 Identities=20% Similarity=0.137 Sum_probs=54.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc---CCCcEEEeccccCCCCCC---CCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER---GAPAMVAAFATRRLPYPS---QAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~---~~~~~~~~~d~~~lp~~~---~sfDlI~s~ 81 (402)
++..|||+|+|+|.++..|++. .++++|+++... +..++. .....+...|...+..+. +.-..|++|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~-----~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~N 104 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLA-----KHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGN 104 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHH-----HHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHH-----HHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEE
Confidence 5679999999999999999865 789999987433 333332 233456667777766554 456677776
Q ss_pred CcccccccChHHHHHHHHHhcCC
Q 015704 82 RCRINWTRDDGILLLEVNRMLRA 104 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~Lkp 104 (402)
.. .+. ...++.++...-+.
T Consensus 105 lP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 105 LP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp ET-GTG---HHHHHHHHHHHGGG
T ss_pred ec-ccc---hHHHHHHHhhcccc
Confidence 43 222 24566666553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.16 Score=47.31 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=71.5
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc------C----cccccccCC-CCCCCCCC-cccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------G----LIGVMHDWC-EPFDTYPR-TYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r------g----~~~~~~~~~-~~~~~~~~-sfD~ 321 (402)
..++||=+|-|.|+.+..+.+.. ++..+.++.+| +..++.+.+- + -+..+++-+ .-+...++ .||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD-~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEID-PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES--HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecC-hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 67789999999999999999875 23333444443 3344443221 1 112222111 11122455 9999
Q ss_pred EEEcccccccccc-CCHHHHHHHhhhhccCCcEEEEEe-----ChhhHHHHHHHHHhcCceEEEeec
Q 015704 322 LHAAGLFSVESKR-CNMSTIMLEMDRMLRPGGHVYIRD-----SIDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 322 v~~~~~~~~~~~~-~~~~~~l~e~~RvLrpgG~~~~~~-----~~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
|+....=...... ---...+..+.|.|+|||.+++.- ..+....+...+++..-.+.....
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~ 220 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTA 220 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEE
Confidence 9986322111100 001488899999999999999873 234455666667777666655443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.12 Score=45.56 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--------CCCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--------PYPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l--------p~~~~sf 75 (402)
+++.+|||+||..|++++...++ -+.++|+-....- .|... +...|+.+. ..|+...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~---------~Ga~~-i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP---------EGATI-IQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC---------CCccc-ccccccCCHHHHHHHHHhCCCCcc
Confidence 46789999999999999877665 4778887553221 11111 111111110 1356789
Q ss_pred eEEEecCccccccc----ChH-------HHHHHHHHhcCCCeEEEEEeC
Q 015704 76 DLIHCSRCRINWTR----DDG-------ILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 76 DlI~s~~~~~~~~~----d~~-------~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|+|- ++..-.. |.. .++.-....++|+|.|++-..
T Consensus 138 dvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 138 DVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred cEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 999963 3232211 111 233344566889999999854
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.26 Score=44.60 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=64.4
Q ss_pred EEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE--EEecc-ccCCCCCCC-CeeEEEecCccc
Q 015704 14 VMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM--VAAFA-TRRLPYPSQ-AFDLIHCSRCRI 85 (402)
Q Consensus 14 VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d-~~~lp~~~~-sfDlI~s~~~~~ 85 (402)
|.|+||--|.+..+|.++ .++++|+++..+..+..... ..++... +..+| .+.+ +++ ..|.|+-..+--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~-~~~l~~~i~~rlgdGL~~l--~~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA-KYGLEDRIEVRLGDGLEVL--KPGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTT-TTTEEEEE-SGGGG----GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCcccEEEEECCccccc--CCCCCCCEEEEecCCH
Confidence 689999999999999987 68999999988877765444 4454332 33333 3333 333 378888544311
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeee
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVK 142 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~ 142 (402)
. -....+.+....++..-.|++.. . .....+|+. ....+|..+.
T Consensus 78 ~---lI~~ILe~~~~~~~~~~~lILqP--~-~~~~~LR~~-------L~~~gf~I~~ 121 (205)
T PF04816_consen 78 E---LIIEILEAGPEKLSSAKRLILQP--N-THAYELRRW-------LYENGFEIID 121 (205)
T ss_dssp H---HHHHHHHHTGGGGTT--EEEEEE--S-S-HHHHHHH-------HHHTTEEEEE
T ss_pred H---HHHHHHHhhHHHhccCCeEEEeC--C-CChHHHHHH-------HHHCCCEEEE
Confidence 1 12566777777777777888883 2 333444433 3345666655
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.41 Score=47.11 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=57.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCc--ccccccCCCCCCC---------------
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGL--IGVMHDWCEPFDT--------------- 314 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~--~~~~~~~~~~~~~--------------- 314 (402)
.|||+=||.|+|+-.|++... .|.+++ .+++++ -+...|+ +..++..++.+..
T Consensus 199 ~vlDlycG~G~fsl~la~~~~-----~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~ 273 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK-----KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGID 273 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-
T ss_pred cEEEEeecCCHHHHHHHhhCC-----eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhh
Confidence 599999999999999999976 344443 233333 3333344 2333222222211
Q ss_pred CC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHhcCceEEEee
Q 015704 315 YP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 315 ~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~ 381 (402)
.. ..+|+|+.. ++|.++...+.+.- .++.=.+++|=+... .+-++. +.+ .|++....
T Consensus 274 ~~~~~~d~vilD------PPR~G~~~~~~~~~--~~~~~ivYvSCnP~tlaRDl~~-L~~-~y~~~~v~ 332 (352)
T PF05958_consen 274 LKSFKFDAVILD------PPRAGLDEKVIELI--KKLKRIVYVSCNPATLARDLKI-LKE-GYKLEKVQ 332 (352)
T ss_dssp GGCTTESEEEE---------TT-SCHHHHHHH--HHSSEEEEEES-HHHHHHHHHH-HHC-CEEEEEEE
T ss_pred hhhcCCCEEEEc------CCCCCchHHHHHHH--hcCCeEEEEECCHHHHHHHHHH-Hhh-cCEEEEEE
Confidence 11 257888776 55666555444433 366778888855544 444444 444 68876543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.26 Score=49.97 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=62.2
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCC-C--CC--CCCeeE-EEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRL-P--YP--SQAFDL-IHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~l-p--~~--~~sfDl-I~s 80 (402)
.+..+||+.||||.++..+++. .|+|+++++.++..|. ..|..+++.+. ++++.++++ + +. .++=++ ++.
T Consensus 383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~ii 461 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAII 461 (534)
T ss_pred CCcEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcchhcCccceeeeecchhhccchhcccCCCCCceEEEE
Confidence 3468999999999999999887 8999999998886665 66667777654 555533332 1 00 012232 221
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...--- =...+++.+.+.-++--.++++..
T Consensus 462 DPpR~G---lh~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 462 DPPRKG---LHMKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred CCCccc---ccHHHHHHHHhccCccceEEEEcC
Confidence 111000 014666777666667777777753
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.43 Score=42.67 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=63.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC----CCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY----PSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~----~~~sfDlI~s 80 (402)
+++.+||=+|+.+|....++.+- .+.++++++....+- +..+.++... .-...|+ ..|. --+..|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reL-l~~a~~R~Ni-~PIL~DA-~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMREL-LDVAEKRPNI-IPILEDA-RKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHH-HHHHHhCCCc-eeeeccc-CCcHHhhhhcccccEEEE
Confidence 46789999999999877777653 588999999766444 4666665321 1122232 2231 1246899996
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
--. -++...-+..++..-||+||+++++
T Consensus 152 DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 152 DVA---QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ecC---CchHHHHHHHHHHHhcccCCeEEEE
Confidence 421 1222356778899999999987776
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.31 Score=47.10 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=53.5
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCCCCC-CCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYP-SQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~lp~~-~~sfDlI~s 80 (402)
.+++|||+|.|.|.-..++..- .++-++.++. +.+.....+..-... ........+.++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 4568999999998655444332 2222333331 111111122211111 00111112344443 356888886
Q ss_pred cCcccccccC--hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d--~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..-+++.... ....++.+..++.|||.|++...
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5444443322 24578899999999999999953
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.12 Score=47.54 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=37.3
Q ss_pred CCCCC-CcccEEEEcc---c-ccccccc--------CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCce
Q 015704 312 FDTYP-RTYDLLHAAG---L-FSVESKR--------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWH 376 (402)
Q Consensus 312 ~~~~~-~sfD~v~~~~---~-~~~~~~~--------~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~ 376 (402)
+..+| +|+|+|+++- + +.+...+ .-...++.|+.|||||||.+++--.-.....+...+++..|.
T Consensus 13 l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~ 90 (227)
T PRK13699 13 MARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFS 90 (227)
T ss_pred HHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCE
Confidence 34577 7999998871 1 1110000 113578999999999999998632221123334444554443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.52 E-value=1 Score=40.32 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=82.2
Q ss_pred eEEeccccchHHHHHHhhc---CCCceEEEeccCCCCCChhhHHhcCc-ccccccCCCC--CCCCCCcccEEEEcccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEP--FDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~~~~~~~~~~~rg~-~~~~~~~~~~--~~~~~~sfD~v~~~~~~~~ 330 (402)
.||=+|+..|+...+.++- |. ++.+...|-...+.+..+.+|-- +..+-|-.-+ ...+=...|+|++.
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D----- 152 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD----- 152 (231)
T ss_pred EEEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-----
Confidence 4999999999999988765 32 46666666655677788888854 5555442211 01111456888776
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEE----------eChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIR----------DSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~----------~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
...+...+-+..-++.-||+||++++. |+.++...--+.+..-..++..+-+.+ |.++.-+++..|
T Consensus 153 VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~Le-Pye~DH~~i~~~ 228 (231)
T COG1889 153 VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLE-PYEKDHALIVAK 228 (231)
T ss_pred cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccC-CcccceEEEEEe
Confidence 222333456778889999999988887 233444433334455556666655432 444555555544
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.12 Score=49.38 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=38.1
Q ss_pred CCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCCcE--EE-eccc----cCCCCCCCCeeEEE
Q 015704 11 LRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAM--VA-AFAT----RRLPYPSQAFDLIH 79 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~-~~d~----~~lp~~~~sfDlI~ 79 (402)
..++||||||...+-..|.. -.++|.|+++..+..|.....+..++... +. +.+. ..+..+++.||+..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 45899999998855444433 38899999998887776444433244432 21 1111 11222346899999
Q ss_pred ecCcccccc
Q 015704 80 CSRCRINWT 88 (402)
Q Consensus 80 s~~~~~~~~ 88 (402)
||..++.-.
T Consensus 183 CNPPFy~s~ 191 (299)
T PF05971_consen 183 CNPPFYSSQ 191 (299)
T ss_dssp E-----SS-
T ss_pred cCCccccCh
Confidence 998755433
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.45 Score=48.12 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=76.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCc--ccccccCCCCCCCCC---CcccEEEEccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGL--IGVMHDWCEPFDTYP---RTYDLLHAAGLFSVE 331 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~--~~~~~~~~~~~~~~~---~sfD~v~~~~~~~~~ 331 (402)
.|||+=||.|+|+-.|+++...|..+.+++..-..+.+-|...|+ +.+.-...|.+..=. ..||.|+..
T Consensus 296 ~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD------ 369 (432)
T COG2265 296 RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD------ 369 (432)
T ss_pred EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC------
Confidence 499999999999999998877555555555433334444444455 222223333333321 478999988
Q ss_pred cccCCHH-HHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEE
Q 015704 332 SKRCNMS-TIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 332 ~~~~~~~-~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~ 378 (402)
++|+... .+++++.+ ++|-..+.+|=+.....+--..+.+-++++.
T Consensus 370 PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i~ 416 (432)
T COG2265 370 PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILASTGYEIE 416 (432)
T ss_pred CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhCCeEEE
Confidence 6777777 66666655 6888999999888777766666777666543
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.065 Score=43.04 Aligned_cols=39 Identities=23% Similarity=0.564 Sum_probs=28.1
Q ss_pred CeeEEEecCcc----cccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 74 AFDLIHCSRCR----INWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 74 sfDlI~s~~~~----~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.||+|+|..+. ++|.++ ...+++.+++.|+|||.|++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999986542 223322 3679999999999999999994
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.48 Score=45.60 Aligned_cols=141 Identities=16% Similarity=0.283 Sum_probs=67.8
Q ss_pred ceEEeccccchHHHHHHhhcC----CCceEEEeccCC-CCCChhhHHh----cCc-cc---ccccCCCCCCC--CC--Cc
Q 015704 256 RNVLDMRAGFGGFAAALIEQK----FDCWVMNVVPVS-GFNTLPVIYD----RGL-IG---VMHDWCEPFDT--YP--RT 318 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~----~~~~~~~v~~~~-~~~~~~~~~~----rg~-~~---~~~~~~~~~~~--~~--~s 318 (402)
..|||-.||+|+|..+..++= ......++.+.| .+.++.++.- +|. .. ..+. ..+.. +. ..
T Consensus 48 ~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~--d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 48 DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG--DSLENDKFIKNQK 125 (311)
T ss_dssp EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES---TTTSHSCTST--
T ss_pred ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc--ccccccccccccc
Confidence 359999999999988876520 000123555555 3344444332 233 11 1111 11211 22 58
Q ss_pred ccEEEEccccccc-------c----------ccCCH-HHHHHHhhhhccCCcEEEEEeChhh------HHHHHHHHHhcC
Q 015704 319 YDLLHAAGLFSVE-------S----------KRCNM-STIMLEMDRMLRPGGHVYIRDSIDV------MDELQEIGKAMG 374 (402)
Q Consensus 319 fD~v~~~~~~~~~-------~----------~~~~~-~~~l~e~~RvLrpgG~~~~~~~~~~------~~~~~~~~~~~~ 374 (402)
||+|++.-=|... . ..... ...+..+.+.|||||.+++--+... ...+++.+-.-+
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhc
Confidence 9999996443322 0 00011 1467779999999998655544322 345665443333
Q ss_pred c-eEEEeecC---CCCCCceEEEEEEec
Q 015704 375 W-HVTLRETA---EGPHASYRILTADKR 398 (402)
Q Consensus 375 w-~~~~~~~~---~~~~~~~~~l~~~k~ 398 (402)
+ +..+.-.. .+...+--+|+.+|.
T Consensus 206 ~i~aVI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 206 YIEAVISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp EEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred hhhEEeecccceecccCcCceEEEEeec
Confidence 3 22222211 114455778888774
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.039 Score=47.91 Aligned_cols=88 Identities=17% Similarity=0.330 Sum_probs=42.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCC-C-cccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYP-R-TYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~-~-sfD~v~~ 324 (402)
+.|+|+-||.||-+-++|.... .|.++| .+..++.+... |+ |..++ ++.+.+..+. + .||+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-----~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-----RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC-----eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 3699999999999999999976 455554 23334333222 43 33444 2222222333 2 2899998
Q ss_pred cc-----------cccc--ccccCCHHHHHHHhhhhc
Q 015704 325 AG-----------LFSV--ESKRCNMSTIMLEMDRML 348 (402)
Q Consensus 325 ~~-----------~~~~--~~~~~~~~~~l~e~~RvL 348 (402)
+- +|.- .....+..+++..+.++-
T Consensus 76 SPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 76 SPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp ---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 52 3322 111224556776666664
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.37 Score=45.15 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=49.1
Q ss_pred CCeEEEECCccc--hhHHHH----cc-CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-------------CC
Q 015704 11 LRVVMDAGCGVA--SFGAYL----LP-RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-------------PY 70 (402)
Q Consensus 11 ~~~VLDiGcG~G--~~~~~L----~~-~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-------------p~ 70 (402)
....||||||-- ...-.+ .. .+|+-+|..+.-+..+..-..........+..+|+.+. .+
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 468999999943 222233 22 27888899886553332211111111133555553321 12
Q ss_pred CCCCeeEEEecCccccccc--ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 71 PSQAFDLIHCSRCRINWTR--DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 71 ~~~sfDlI~s~~~~~~~~~--d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+..+-+++ ..++++..+ ++..+++.+...|.||.+|+++..
T Consensus 149 -~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 149 -DRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp -TS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred -CCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 24455555 445444443 368999999999999999999964
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.62 Score=45.32 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=62.5
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc---C-C-Cc--EEEeccccC-CCCCCCCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER---G-A-PA--MVAAFATRR-LPYPSQAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~---~-~-~~--~~~~~d~~~-lp~~~~sfDl 77 (402)
..++||-+|.|.|.-++.+.+. +++-+|++|.+++-+........ + . +. .+...|+-+ +.-..+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 4568999999999988888875 67888888877755442221111 1 1 11 233333221 2223468999
Q ss_pred EEecCcccccccCh-------HHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTRDD-------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~d~-------~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.-.. -+.++ ..+..-+.|.|+++|.+++..
T Consensus 369 vIVDl~---DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 369 VIVDLP---DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEeCC---CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 995321 11111 356777889999999999974
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.31 Score=43.29 Aligned_cols=109 Identities=23% Similarity=0.240 Sum_probs=63.1
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhcCC-CceEEEeccCCCCCChhhHHhcCc-ccccccCCCCCCCCCCccc
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKF-DCWVMNVVPVSGFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYD 320 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD 320 (402)
+|...- ...-+=++|||+|+|+|--+-+-+..|+ .|+..++.|....+.---+...|+ +...|..+ ..-|..||
T Consensus 69 R~i~~~-PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g~~~~~D 144 (218)
T COG3897 69 RYIDDH-PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IGSPPAFD 144 (218)
T ss_pred HHHhcC-ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cCCCccee
Confidence 675432 2333456799999999976655555543 223444444332222222233354 66666533 33248999
Q ss_pred EEEEccccc-cccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 321 LLHAAGLFS-VESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 321 ~v~~~~~~~-~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|.++.+|- |-. -..++.=.+|+...|-.+++=|+
T Consensus 145 l~LagDlfy~~~~----a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 145 LLLAGDLFYNHTE----ADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred EEEeeceecCchH----HHHHHHHHHHHHhCCCEEEEeCC
Confidence 999998884 322 24666656667777777777664
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.13 Score=51.09 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=56.9
Q ss_pred eEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCC-CCcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTY-PRTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~-~~sfD~v~~~~ 326 (402)
+|||+-||+|.++-.++.+ |+ -.|+.+| ++..++.+.+ .++ +..++.-...+... ...||+|...-
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga----~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGV----REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCC----CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 4999999999999999987 32 1445555 3334433322 122 22333222111111 25799999973
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+ -.+...|...-+.+++||++.++
T Consensus 123 -f------Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 -F------GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -C------CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 12358899999999999999999
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.36 Score=40.75 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=59.6
Q ss_pred ccccccCCCCCCCCC-C-cccEEEEcccccccccc--C---CH---HHHHHHhhhhccCCcEEEEEe------ChhhHHH
Q 015704 302 IGVMHDWCEPFDTYP-R-TYDLLHAAGLFSVESKR--C---NM---STIMLEMDRMLRPGGHVYIRD------SIDVMDE 365 (402)
Q Consensus 302 ~~~~~~~~~~~~~~~-~-sfD~v~~~~~~~~~~~~--~---~~---~~~l~e~~RvLrpgG~~~~~~------~~~~~~~ 365 (402)
+..+|+.=|.+..|- . .+|++... |-||+.. . .+ ..+|....++|+|||.+++.- ..+..+.
T Consensus 28 v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~a 105 (140)
T PF06962_consen 28 VTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEA 105 (140)
T ss_dssp EEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHH
T ss_pred EEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHH
Confidence 444555545556653 4 89998887 5666521 1 11 278888899999999999982 3466777
Q ss_pred HHHHHHhc---CceEEEeecCCCCCCceEEEEEEe
Q 015704 366 LQEIGKAM---GWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 366 ~~~~~~~~---~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
+.+.+.++ .|++...+-.+-...|..+++.+|
T Consensus 106 v~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 106 VEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 77777665 678888877776667777777665
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.25 Score=41.46 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=27.9
Q ss_pred eEEEECCccchhHHHHccC----CceEEeCCccchHHHH
Q 015704 13 VVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQ 47 (402)
Q Consensus 13 ~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~ 47 (402)
+++|+|||.|.++..++.. .++++|.++......+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999988877754 5899999987765444
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.42 Score=49.74 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=28.2
Q ss_pred cceEEeccccchHHHHHHhhcCCC-----ceEEEeccCC-CCCChhhHH
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFD-----CWVMNVVPVS-GFNTLPVIY 297 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~-----~~~~~v~~~~-~~~~~~~~~ 297 (402)
..+|||.+||+|+|...++++... ....++...| .+..+..+.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 346999999999999998765311 1235666666 344554443
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.93 Score=42.13 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=30.9
Q ss_pred eeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 75 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
||+|+++.++++ ...+..+..-++..|..+|.+++.++
T Consensus 163 ~DlilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999988554 33678899999999999997777764
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.57 Score=46.18 Aligned_cols=108 Identities=23% Similarity=0.239 Sum_probs=61.4
Q ss_pred hcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh---hhHHhc-Ccc--cccccCCCCCCC-CC-C
Q 015704 247 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL---PVIYDR-GLI--GVMHDWCEPFDT-YP-R 317 (402)
Q Consensus 247 ~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~---~~~~~r-g~~--~~~~~~~~~~~~-~~-~ 317 (402)
.+....| -.|||+-+++|+=+.+|++...+ ....|++.| +..-+ .....| |+. ...+.-...++. ++ .
T Consensus 151 ~L~p~pg--e~VlD~cAAPGGKTthla~~~~~-~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 151 VLDPKPG--ERVLDLCAAPGGKTTHLAELMEN-EGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HcCCCCc--CEEEEECCCCCCHHHHHHHhcCC-CCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc
Confidence 3445555 45999999999988888877431 122367777 33333 333333 542 222211112222 23 2
Q ss_pred -cccEEEEc------ccccc---ccc---cCCH-------HHHHHHhhhhccCCcEEEEE
Q 015704 318 -TYDLLHAA------GLFSV---ESK---RCNM-------STIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 318 -sfD~v~~~------~~~~~---~~~---~~~~-------~~~l~e~~RvLrpgG~~~~~ 357 (402)
.||-|... +++.- ... ..++ ..+|....++|||||.++.+
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 49999862 33311 000 0011 17888899999999999999
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.19 Score=47.91 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=60.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Ccc-cccccCCCCCCCC------CCcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GLI-GVMHDWCEPFDTY------PRTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~~-~~~~~~~~~~~~~------~~sfD~v~~ 324 (402)
++|||+=|-+|+|+.+.+..|+. .|++|.. +...++.+.+. |+- ..+.-.+++...| ...||+|++
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~-~v~~VD~--S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAK-EVVSVDS--SKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTES-EEEEEES---HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CceEEecCCCCHHHHHHHHCCCC-EEEEEeC--CHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46999999999999998888862 3344433 33444433332 431 1111111111111 258999988
Q ss_pred c------cccccccccCCHHHHHHHhhhhccCCcEEEEEeC------hhhHHHHHHHHHhcC
Q 015704 325 A------GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMG 374 (402)
Q Consensus 325 ~------~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~------~~~~~~~~~~~~~~~ 374 (402)
. +-+.- . .+...++.-..++|+|||.+++... ....+.++.....+.
T Consensus 202 DPPsF~k~~~~~-~--~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~ 260 (286)
T PF10672_consen 202 DPPSFAKSKFDL-E--RDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVE 260 (286)
T ss_dssp --SSEESSTCEH-H--HHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCE
T ss_pred CCCCCCCCHHHH-H--HHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccce
Confidence 4 11111 1 1345778888899999999987743 233445555554433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.44 Score=40.25 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=19.7
Q ss_pred CCcceEEeccccchHHHHHHhh
Q 015704 253 MKLRNVLDMRAGFGGFAAALIE 274 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~ 274 (402)
.+...|+|+|||-|.++..|+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH
Confidence 4567799999999999999998
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.3 Score=40.92 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS 288 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~ 288 (402)
+|||+|||.|.++..++..+....+..+.|..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH
Confidence 38999999999999999887643456666654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.73 Score=44.82 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=62.7
Q ss_pred cCCCCcceEEeccccchHHHHHHhh-cCCCceEEEeccCC-CCCChhhHHhcCcccccccCC-CCCCCCCCcccEEEEcc
Q 015704 250 WKKMKLRNVLDMRAGFGGFAAALIE-QKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWC-EPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 250 ~~~~~~~~vLD~g~g~G~~~~~l~~-~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~-~~~~~~~~sfD~v~~~~ 326 (402)
...|.-=.|.=+| |.|..+..+++ .|+ .|++++ +++.++.+.+-|.--.+.... +........||+|+.-
T Consensus 164 ~~pG~~V~I~G~G-GlGh~avQ~Aka~ga-----~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t- 236 (339)
T COG1064 164 VKPGKWVAVVGAG-GLGHMAVQYAKAMGA-----EVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT- 236 (339)
T ss_pred CCCCCEEEEECCc-HHHHHHHHHHHHcCC-----eEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC-
Confidence 4445444466666 78888888888 566 777777 567788888877733333221 1112223459998877
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
. . ...+...-+.||+||.+++--
T Consensus 237 -------v-~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 237 -------V-G-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred -------C-C-hhhHHHHHHHHhcCCEEEEEC
Confidence 2 2 578888999999999999974
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.25 Score=39.52 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=20.9
Q ss_pred CCCeEEEECCccchhHHHHccCCceEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPRNVITM 36 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~~v~~v 36 (402)
+....+|+|||+|.+.-.|.+.++.|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~ 84 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGW 84 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcc
Confidence 456899999999998877777654443
|
; GO: 0008168 methyltransferase activity |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.045 Score=43.69 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=33.2
Q ss_pred EeccccchHHHHHHhhc---CCCceEEEeccCCC-CCChhhHHhcCc---ccccccCC-CCCCCCC-CcccEEEEccccc
Q 015704 259 LDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSG-FNTLPVIYDRGL---IGVMHDWC-EPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 259 LD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~~-~~~~~~~~~rg~---~~~~~~~~-~~~~~~~-~sfD~v~~~~~~~ 329 (402)
|++|+..|..+..|++. +....+..|.+... +...+...+.++ +..+.... +.++.++ .+||+++-.. .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 57899999888777653 11012334444331 122333333333 33333222 1233456 7999999873 3
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|.. .....-+..+.+.|+|||.+++-|
T Consensus 79 H~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 322 123467777889999999999865
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=89.17 E-value=12 Score=34.67 Aligned_cols=172 Identities=12% Similarity=0.121 Sum_probs=73.1
Q ss_pred CCCCeEEEECCccc-hhHHHHcc--CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCCCC-CCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVA-SFGAYLLP--RNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPYP-SQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G-~~~~~L~~--~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~-~~lp~~-~~sfDlI~s~~~ 83 (402)
-.+++||-+|=..- +++..+.. .+++.+|++...+ ....+.|++.+++......|. ..+|-. .++||++++...
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 36789999985543 34444433 3788999987554 333467778888866666563 233321 378999997543
Q ss_pred ccccccChHHHHHHHHHhcCCCe-EEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhhhhhh
Q 015704 84 RINWTRDDGILLLEVNRMLRAGG-YFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNR 162 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG-~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 162 (402)
.. .+...-++.+....||..| ..+++......+ ...|.++......+++..-.--.....|.- .+...-.
T Consensus 122 -yT-~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s----~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~g--a~~i~~~- 192 (243)
T PF01861_consen 122 -YT-PEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS----PDKWLEVQRFLLEMGLVITDIIPDFNRYEG--AEIIGNT- 192 (243)
T ss_dssp -SS-HHHHHHHHHHHHHTB-STT-EEEEEE-TTT------HHHHHHHHHHHHTS--EEEEEEEEEEEB-----S-GGGS-
T ss_pred -CC-HHHHHHHHHHHHHHhCCCCceEEEEEecCcCc----HHHHHHHHHHHHHCCcCHHHHHhhhccccc--chhhccc-
Confidence 11 1234678899999998766 445542111111 334555555444444433221111222221 1111100
Q ss_pred hcCCCCCCCCCCCCCCCcccccccceeecCC
Q 015704 163 EAGTIPPLCDPDDNPDNVWYVDLKACITRLP 193 (402)
Q Consensus 163 ~aGf~~~~~~~~~~~~~~~y~~~~~~l~~l~ 193 (402)
.+. ........+...||.+..--++-++
T Consensus 193 --~~~-~~l~v~~~~~~~~y~s~~~rie~~~ 220 (243)
T PF01861_consen 193 --RFW-QVLPVKKRPEKIWYRSTMPRIETVR 220 (243)
T ss_dssp --HHH-HHSSS----SS---EEEEEEEE--T
T ss_pred --cee-EEeccccccccccccceeEEEEEec
Confidence 000 0111234677889999888887776
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.25 Score=43.84 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=52.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhHHhc----Cccc---ccc-cCCCCCCCC--C-CcccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYDR----GLIG---VMH-DWCEPFDTY--P-RTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~r----g~~~---~~~-~~~~~~~~~--~-~sfD~v~~ 324 (402)
.|||+=||+|.++-...+||+. .|+-+|. ...++.+.+. ++-. .+. +....+... . ..||+|++
T Consensus 45 ~vLDLFaGSGalGlEALSRGA~----~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 45 RVLDLFAGSGALGLEALSRGAK----SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp EEEETT-TTSHHHHHHHHTT-S----EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred eEEEcCCccCccHHHHHhcCCC----eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 3999999999999999999973 4555552 2333222211 2211 111 111112112 3 79999999
Q ss_pred ccccccccccCCHHHHHHHhh--hhccCCcEEEEEeCh
Q 015704 325 AGLFSVESKRCNMSTIMLEMD--RMLRPGGHVYIRDSI 360 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~--RvLrpgG~~~~~~~~ 360 (402)
.==+..-. .+..+|.-+. .+|+|+|.+|+-...
T Consensus 121 DPPY~~~~---~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYAKGL---YYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STTSCH---HHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCcccch---HHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 72111110 0255666665 899999999997543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 402 | |||
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 7e-07 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 2e-06 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 4e-06 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 1e-05 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 2e-05 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 3e-05 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-05 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 4e-05 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 1e-04 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 1e-04 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-04 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 3e-04 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 4e-04 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 4e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 5e-04 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 5e-04 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 5e-04 |
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 21/130 (16%)
Query: 12 RVVMDAGCGVASFGAYLL---PRNVITMSIAPKDVHENQIQFALERGAPAMVAAFA--TR 66
+ V+D GCG Y + V+ + D+ E + A + +V
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRKTTSPVVCYEQKAIE 100
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYF----------AWAAQPVY 116
+ A++++ S +++ + +V L++ G F A Q Y
Sbjct: 101 DIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWY 159
Query: 117 KHEEAQEEHW 126
E + HW
Sbjct: 160 TDETGNKLHW 169
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
Query: 12 RVVMDAGCGVASFGAYLL---PRNVITMSIAPKDVHENQIQFALERGAPAMVA---AFAT 65
++D GCG F + V+ + D+ E + A G + A
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGL-----DLSEKMLARARAAGPDTGITYERADLD 99
Query: 66 RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ-PVYKHEEAQEE 124
+ L P +FDL + S +++ D L V++ L GG+F ++ + P+Y
Sbjct: 100 K-LHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGW 157
Query: 125 HWKE 128
Sbjct: 158 AIDA 161
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 14 VMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
V+D G G + +L R V+ + D + ++ A E+G +V A A LP+P
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVVLV-----DPSKEMLEVAREKGVKNVVEAKA-EDLPFP 111
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126
S AF+ + +++ + E+ R+L G Y + E
Sbjct: 112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKD 166
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-06
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMV-AAFAT---RRLP 69
V+D CGV F L + + D+ E+ I+ A E F R+L
Sbjct: 42 VLDLACGVGGFSFLLEDYGFEVVGV---DISEDMIRKAREYAKSRESNVEFIVGDARKLS 98
Query: 70 YPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKE 128
+ + FD + +++ + + EV R+L+ G F + + +E
Sbjct: 99 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVV 158
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 16/155 (10%)
Query: 13 VVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS 72
V++D GCG + YLL I D++ ++ E+ + + P
Sbjct: 20 VIVDYGCGNGFYCKYLLEFATKLYCI---DINVIALKEVKEKFDSVITLSDP---KEIPD 73
Query: 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA---WAAQ-----PVYKHEEAQEE 124
+ D I + + D ++ EV R+L+ G W + P +++
Sbjct: 74 NSVDFILFANS-FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKD 132
Query: 125 HWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSCY 159
+ + + + + K+ T+ +
Sbjct: 133 YMGWFSNFVVEKRFNPTPYH-FGLVLKRKTSEGHH 166
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 14 VMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT---RR 67
+D G G+ LL + + + ++ ++ A A V F
Sbjct: 97 ALDCGAGIGRITKNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMET 151
Query: 68 LPYPSQAFDLIHCSRCRINWTRDDGILLL-EVNRMLRAGGYFAWA 111
P +DLI I T D + + L GY +
Sbjct: 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK 196
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 5/125 (4%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
V+ D G G + L + + ++ + Q A+ +A L P
Sbjct: 36 SVIADIGAGTGGYSVALANQGLFVYAV---EPSIVMRQQAVVHPQVEWFTGYAEN-LALP 91
Query: 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLD 131
++ D + I+ E+ R++R G +++ + +
Sbjct: 92 DKSVDGVISILA-IHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWE 150
Query: 132 LTTRL 136
R
Sbjct: 151 DALRF 155
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 13/137 (9%)
Query: 14 VMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAA-FAT---R 66
V+D G G + + ++ + Q++ A + R
Sbjct: 27 VLDCGAGGDLPPLSIFVEDGYKTYGI-----EISDLQLKKAENFSRENNFKLNISKGDIR 81
Query: 67 RLPYPSQAFDLIHCSRCRINWTRDDGILLL-EVNRMLRAGGYFAWAAQPVYKHEEAQEEH 125
+LP+ ++ ++ + ++D + E+ R+L+ GG + E
Sbjct: 82 KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEK 141
Query: 126 WKEMLDLTTRLCWELVK 142
E L +++
Sbjct: 142 IGEGEFLQLERGEKVIH 158
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-05
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA---MVAAFATRRLPY 70
V+D GCG L + + D+ E IQ ERG + + LP+
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAVGV---DISEVMIQKGKERGEGPDLSFIKGDLSS-LPF 112
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
++ F+ I + WT + L E+ R+L++ GY A + + +E + +
Sbjct: 113 ENEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACIAI--LGPTAKPRENSYPRLY 169
Query: 131 D 131
Sbjct: 170 G 170
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 10/99 (10%), Positives = 27/99 (27%), Gaps = 8/99 (8%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALER--GAPAMVAAFATRRLPYP 71
++D G G + +L + + ++ A + L
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGL---EPATRLVELARQTHPSVTFHHGTI--TDLSDS 99
Query: 72 SQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFA 109
+ + + I+ + L+ + + GG
Sbjct: 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLL 138
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPS 72
++DAGCG G YL + + D+ I +A + A V
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGT---DLDPILIDYAKQDFPEARWVVGDL-SVDQISE 105
Query: 73 QAFDLIHCSRCRINWTRDDGIL--LLEVNRMLRAGGYF 108
FDLI + + + +DG L ++R L A G
Sbjct: 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRA 143
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 24/164 (14%)
Query: 14 VMDAGCGVASFGAYL---LPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT----- 65
+ D GCG L + V + D I + + T
Sbjct: 50 IADIGCGTGGQTMVLAGHVTGQVTGL-----DFLSGFIDIFNRNARQSGLQNRVTGIVGS 104
Query: 66 -RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA--WAAQPVYKHEEAQ 122
LP+ ++ DLI N + G L E + L+ GGY A + +
Sbjct: 105 MDDLPFRNEELDLIWSEGAIYNIGFERG--LNEWRKYLKKGGYLAVSECSWFTDERPAEI 162
Query: 123 EEHWK----EMLDLTTRLCWELVKKEGYIAIWKKPTNNSCYLNR 162
+ W E+ + ++ + K GY+ + +C+ +
Sbjct: 163 NDFWMDAYPEIDTIPNQV--AKIHKAGYLPVATFILPENCWTDH 204
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 20/149 (13%)
Query: 14 VMDAGCGVASFGAYL---LPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFAT----- 65
+ D GCG +L + + + D+ + I+ E A A
Sbjct: 50 IADIGCGTGGQTLFLADYVKGQITGI-----DLFPDFIEIFNENAVKANCADRVKGITGS 104
Query: 66 -RRLPYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA---WAAQPVYKHEEA 121
LP+ ++ DLI S I + + E ++ L+ GG+ A + + E
Sbjct: 105 MDNLPFQNEELDLIW-SEGAI-YNIGFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEI 162
Query: 122 QEEHWKEMLDLTT-RLCWELVKKEGYIAI 149
++ +++ C + +++ GY
Sbjct: 163 EDFWMDAYPEISVIPTCIDKMERAGYTPT 191
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 4e-04
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (7%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAF---ATRRLPY 70
V+D GCG L R + + + D + A GA + A
Sbjct: 56 VLDLGCGEGWLLRALADRGIEAVGV---DGDRTLVDAARAAGAGEVHLASYAQLAEAKVP 112
Query: 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ-PVYKHEEAQEEHWKE 128
+ +DLI C+ + D LL + +L GG P + ++ W+E
Sbjct: 113 VGKDYDLI-CANFALLHQ-DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWRE 169
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 12 RVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
V+D GCG + + DV + I+ A +R ++ RLP+
Sbjct: 87 TAVLDIGCGEGYYTHAFADALPEITTFGL-DVSKVAIKAAAKRYPQVTFCVASSHRLPFS 145
Query: 72 SQAFDLIHCSRCRIN------WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 124
+ D I + G ++ V+ H E+
Sbjct: 146 DTSMDAIIRIYAPCKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQ 204
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 12/129 (9%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-----L 68
V++AGCG+ + +L +N I D+ ++ A E + + L
Sbjct: 41 VLEAGCGIGAQ-TVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99
Query: 69 PYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA-----WAAQPVYKHEEAQE 123
P+ +FD I + + L + ++L+ GG + + +
Sbjct: 100 PFEDSSFDHIFVCFV-LEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI 158
Query: 124 EHWKEMLDL 132
E W ++ +
Sbjct: 159 EAWNCLIRV 167
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 5e-04
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 15 MDAGCGVASFGAYLL---PRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP 71
+D G G+ LL R V + I + + + E +
Sbjct: 84 LDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE 143
Query: 72 SQAFDLIHCSRCRINWTRDDGILLL-EVNRMLRAGGYFA 109
++D+I + T L LR G
Sbjct: 144 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV 182
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 35/158 (22%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 73
V+D GC + GA + I + + A E+ ++ T +PY +
Sbjct: 36 VLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLDHVVLGDIETMDMPYEEE 92
Query: 74 AFDLIHCS--------------RCRINWTRDDGILLLEV-NRMLRA------GGYFAWAA 112
FD + + + + + +G++L + N + G + +
Sbjct: 93 QFDCVIFGDVLEHLFDPWAVIEKVK-PYIKQNGVILASIPNVSHISVLAPLLAGNWTYTE 151
Query: 113 QPVYKHEEAQEEHWK-----EMLDLTTRLCWELVKKEG 145
+ H + EML + + + + K +
Sbjct: 152 YGLLDK-----THIRFFTFNEMLRMFLKAGYSISKVDR 184
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPS 72
+++ G G + L + + + + R A V A+ LP+P
Sbjct: 40 LLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRAPEATWVRAWGEA-LPFPG 93
Query: 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFA 109
++FD++ + + D +LLE R+LR GG
Sbjct: 94 ESFDVVLLFTT-LEFVEDVERVLLEARRVLRPGGALV 129
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 402 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.59 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.59 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.56 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.56 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.55 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.54 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.52 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.51 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.5 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.49 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.48 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.48 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.48 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.48 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.48 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.47 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.47 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.46 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.46 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.46 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.46 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.45 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.45 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.45 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.45 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.45 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.44 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.44 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.44 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.44 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.43 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.43 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.43 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.43 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.43 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.43 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.43 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.42 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.42 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.42 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.42 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.42 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.42 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.41 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.41 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.41 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.41 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.41 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.4 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.4 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.4 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.4 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.4 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.4 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.4 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.4 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.4 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.4 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.39 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.39 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.39 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.39 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.39 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.38 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.38 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.38 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.38 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.38 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.37 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.37 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.37 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.37 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.36 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.36 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.36 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.36 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.36 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.36 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.36 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.36 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.36 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.35 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.35 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.35 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.35 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.35 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.35 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.35 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.35 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.35 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.35 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.35 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.35 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.35 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.34 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.34 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.34 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.34 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.34 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.34 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.34 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.34 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.34 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.33 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.33 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.33 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.33 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.33 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.33 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.33 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.33 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.33 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.32 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.32 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.32 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.32 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.32 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.32 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.32 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.31 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.31 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.31 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.31 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.3 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.3 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.3 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.3 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.29 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.29 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.29 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.29 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.29 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.29 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.29 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.29 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.29 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.29 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.28 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.28 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.28 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.28 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.27 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.27 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.27 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.27 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.27 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.27 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.26 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.26 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.26 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.26 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.26 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.25 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.25 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.25 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.25 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.25 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.25 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.24 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.24 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.23 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.23 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.23 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.23 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.23 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.23 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.22 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.22 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.22 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.22 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.22 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.21 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.21 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.21 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.21 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.21 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.2 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.2 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.2 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.2 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.2 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.2 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.19 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.19 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.18 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.18 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.18 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.18 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.17 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.17 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.16 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.16 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.16 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.15 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.15 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.15 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.15 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.15 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.15 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.15 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.15 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.15 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.15 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.15 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.14 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.14 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.14 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.14 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.13 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.13 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.13 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.13 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.12 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.12 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.12 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.12 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.11 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.11 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.11 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.11 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.11 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.1 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.1 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.1 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.1 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.1 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.1 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.1 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.09 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.09 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.09 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.08 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.08 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.08 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.08 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.08 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.08 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.08 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.08 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.07 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.07 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.07 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.07 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.07 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.07 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.07 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.07 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.07 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.06 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.06 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.06 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.06 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.06 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.06 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.06 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.05 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.05 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.05 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.05 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.05 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.04 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.04 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.04 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.04 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.04 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.04 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.03 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.03 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.03 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.03 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.03 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.03 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.03 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.03 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.02 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.02 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.02 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.02 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.02 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.02 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.02 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.02 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.02 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.02 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.01 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.01 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.01 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.01 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.0 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.0 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.0 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.0 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.99 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.99 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.99 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.99 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.99 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.99 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.99 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.99 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.99 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.99 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.98 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.98 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.98 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.98 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.98 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.97 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.97 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.97 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.97 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.96 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.96 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.96 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.96 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.96 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.95 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.95 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.95 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.95 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.95 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.95 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.94 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.94 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.93 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.93 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.93 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.92 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.92 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.92 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.92 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.92 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.91 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.91 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.91 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.91 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.91 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.91 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.91 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.91 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.91 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.91 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.91 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.9 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.9 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.9 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.9 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.9 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.9 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.89 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.89 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.89 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.89 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.89 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.88 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.88 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.87 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.87 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.87 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.87 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.87 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.87 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.86 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.86 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.86 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.86 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.86 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.86 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.85 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.85 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.85 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.85 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.85 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.85 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.84 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.84 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.84 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.84 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.84 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.83 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.83 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.83 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.83 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.82 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.82 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.82 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.82 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.81 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.81 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.81 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.81 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.8 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.8 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.8 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.8 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.8 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.8 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.8 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.8 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.79 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.79 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.79 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.78 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.78 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.78 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.78 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.78 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.77 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.77 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.77 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.77 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.77 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.76 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.76 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.76 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.76 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.76 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.76 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.75 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.75 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.75 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.74 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.74 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.73 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.71 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.71 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.71 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.71 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.7 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.69 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.67 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.67 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.67 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.67 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.67 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.67 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.67 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.67 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.66 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.65 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.64 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.64 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.64 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.63 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.63 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.62 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.6 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.6 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.59 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.59 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.59 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.59 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.57 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.57 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.56 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.55 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.54 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.54 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.53 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.53 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.53 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.52 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.52 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.52 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.51 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.51 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.51 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.5 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.48 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.48 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.48 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.48 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.47 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.46 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.46 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.46 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.43 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.43 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.41 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.4 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.4 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.38 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.38 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.37 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.37 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.35 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.35 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.32 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.32 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.31 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.31 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.31 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.31 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.31 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.3 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.28 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=140.77 Aligned_cols=112 Identities=17% Similarity=0.220 Sum_probs=86.3
Q ss_pred cCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+.....+|||+|||+|.++..|++. +|+++|+++.++ +.+++ .....+...+++++|+++++||+|+|+.+
T Consensus 36 ~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml-----~~a~~-~~~v~~~~~~~e~~~~~~~sfD~v~~~~~- 108 (257)
T 4hg2_A 36 VAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQI-----RQALR-HPRVTYAVAPAEDTGLPPASVDVAIAAQA- 108 (257)
T ss_dssp HSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHH-----HTCCC-CTTEEEEECCTTCCCCCSSCEEEEEECSC-
T ss_pred hcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhh-----hhhhh-cCCceeehhhhhhhcccCCcccEEEEeee-
Confidence 3445679999999999999999886 789999987655 33332 23455777889999999999999999877
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHH
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~ 126 (402)
+||. ++..++++++|+|||||.|++.+.......+++....
T Consensus 109 ~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~ 149 (257)
T 4hg2_A 109 MHWF-DLDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVV 149 (257)
T ss_dssp CTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHH
T ss_pred hhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHH
Confidence 5776 6889999999999999999988643333334444443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.7e-15 Score=136.74 Aligned_cols=103 Identities=15% Similarity=0.308 Sum_probs=83.9
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+.+.+.+ ..+...|++.+|+++++||+|+|+.+++
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVAR-AFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH 114 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence 35679999999999999988876 7999999998876665 334444444 4567788899999999999999988766
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+ +++..+++++.++|||||.+++..+
T Consensus 115 ~~-~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 115 HF-PNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp GC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hc-CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 65 4899999999999999999999753
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=131.86 Aligned_cols=103 Identities=25% Similarity=0.422 Sum_probs=84.5
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+.. ..+...|.+.+|+++++||+|+|+.+++
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 98 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH 98 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchh
Confidence 35679999999999999988876 7999999998876655 333344443 4567778888999989999999998866
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. ++..+++++.++|||||.+++...
T Consensus 99 ~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 99 HFS-DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp GCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcc-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 665 889999999999999999999854
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-15 Score=139.15 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=79.9
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeE
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDL 77 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDl 77 (402)
.+.+++.+|||+|||+|.++..++++ +|+|+|+++.++..++.. ....+. ...+..+|+.++|++ +||+
T Consensus 66 ~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~-~~~~~~~~~v~~~~~D~~~~~~~--~~d~ 142 (261)
T 4gek_A 66 RFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRH-IDAYKAPTPVDVIEGDIRDIAIE--NASM 142 (261)
T ss_dssp HHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHH-HHTSCCSSCEEEEESCTTTCCCC--SEEE
T ss_pred HhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHH-HHhhccCceEEEeeccccccccc--cccc
Confidence 34567889999999999998888754 589999999888766533 333332 345777888888764 6999
Q ss_pred EEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 78 IHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 78 I~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+++.+++++... ...++++++++|||||.|+++..
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 9998875554422 35789999999999999999854
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=128.87 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=104.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 333 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~ 333 (402)
+|||+|||+|.++..|+++|. .|+++| ++.+++.+.++.- +..+....+.++ ++ ++||+|+|..+++|+.
T Consensus 44 ~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~- 116 (203)
T 3h2b_A 44 VILDVGSGTGRWTGHLASLGH-----QIEGLEPATRLVELARQTHPSVTFHHGTITDLS-DSPKRWAGLLAWYSLIHMG- 116 (203)
T ss_dssp CEEEETCTTCHHHHHHHHTTC-----CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGG-GSCCCEEEEEEESSSTTCC-
T ss_pred eEEEecCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccc-cCCCCeEEEEehhhHhcCC-
Confidence 499999999999999999986 566666 5678888877632 333333333333 55 8999999999999997
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEeCh----------------hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
..++..+|.++.|+|||||++++++.. ...+.++.++++-.|++........ .|..+|...|
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~ 194 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEA 194 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhh
Confidence 347899999999999999999999632 2378899999999999988876544 6777777766
Q ss_pred c
Q 015704 398 R 398 (402)
Q Consensus 398 ~ 398 (402)
+
T Consensus 195 ~ 195 (203)
T 3h2b_A 195 S 195 (203)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=134.46 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=102.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEcc-cccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAG-LFSVES 332 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~-~~~~~~ 332 (402)
.+|||+|||+|.++..|++++. +|+++| ++.+++.+.++.- +..+..-.+.++ ++++||+|+|.. +|+|+.
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADSFG-----TVEGLELSADMLAIARRRNPDAVLHHGDMRDFS-LGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTTSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCC-CSCCEEEEEECTTGGGGSC
T ss_pred CcEEEeCCcCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChHHCC-ccCCcCEEEEcCchhhhcC
Confidence 4699999999999999999986 566676 5678888877632 333333333333 368999999998 999997
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEEEeC-----------------------------------------------------
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYIRDS----------------------------------------------------- 359 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~~~~----------------------------------------------------- 359 (402)
+..++..+|.++.|+|||||++++.+.
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH 205 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence 655678999999999999999999520
Q ss_pred --------hhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 360 --------IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 360 --------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
....+.++.++++-.+++....... ....+++++|+
T Consensus 206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~---~~~~~~va~K~ 249 (263)
T 3pfg_A 206 HEESHRITLFTREQYERAFTAAGLSVEFMPGGP---SGRGLFTGLPG 249 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTT---TSSCEEEEEEC
T ss_pred EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCC---CCceeEEEecC
Confidence 0126889999999999887764433 35668888885
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.9e-14 Score=126.80 Aligned_cols=160 Identities=15% Similarity=0.179 Sum_probs=101.5
Q ss_pred cCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC------CcEEEeccccCCCCCCCCeeEE
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA------PAMVAAFATRRLPYPSQAFDLI 78 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~------~~~~~~~d~~~lp~~~~sfDlI 78 (402)
+..++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+. ...+...|...+++++++||+|
T Consensus 27 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 27 YLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAE-TAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp HCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred hCCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHH-HHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 3456789999999999999888876 7889999887664443 22222232 2346677888888888999999
Q ss_pred EecCcccccccChH---HHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHH-HHhhhhhcceeeeecc-c--eEEEee
Q 015704 79 HCSRCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKE-MLDLTTRLCWELVKKE-G--YIAIWK 151 (402)
Q Consensus 79 ~s~~~~~~~~~d~~---~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~-~~~~~~~~~~~~~~~~-~--~~~~~~ 151 (402)
+++.+++|+. ++. .+++++.++|||||.+++.++............+.. .........|...... + ....+.
T Consensus 106 ~~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (235)
T 3sm3_A 106 VMQAFLTSVP-DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHH 184 (235)
T ss_dssp EEESCGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEEC
T ss_pred EEcchhhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEe
Confidence 9988866654 665 899999999999999999875333333333332221 1111111112111100 0 112223
Q ss_pred cCCChhhhhhhhcCCCC
Q 015704 152 KPTNNSCYLNREAGTIP 168 (402)
Q Consensus 152 ~~~~~~~~~l~~aGf~~ 168 (402)
....+...+++++||.+
T Consensus 185 ~~~~~l~~ll~~aGf~~ 201 (235)
T 3sm3_A 185 FTEKELVFLLTDCRFEI 201 (235)
T ss_dssp BCHHHHHHHHHTTTEEE
T ss_pred CCHHHHHHHHHHcCCEE
Confidence 33345666888999954
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-15 Score=138.10 Aligned_cols=93 Identities=20% Similarity=0.166 Sum_probs=75.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~ 333 (402)
.+|||+|||+|.++..|++++. +|+++| ++.|++.+..+.-+..++...+.++ +| ++||+|+|.++|+|.+
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~-----~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~-~~~~sfD~v~~~~~~h~~~- 113 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE-----RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTG-LPPASVDVAIAAQAMHWFD- 113 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS-----EEEEEESCHHHHHTCCCCTTEEEEECCTTCCC-CCSSCEEEEEECSCCTTCC-
T ss_pred CCEEEEcCCCCHHHHHHHHhCC-----EEEEEeCcHHhhhhhhhcCCceeehhhhhhhc-ccCCcccEEEEeeehhHhh-
Confidence 3699999999999999999987 566666 5677777766544566666666654 77 8999999999996653
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++.++.|+.|+|||||+|++-.
T Consensus 114 ---~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 114 ---LDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEE
Confidence 5799999999999999998864
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-13 Score=126.47 Aligned_cols=115 Identities=19% Similarity=0.249 Sum_probs=90.0
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+.. ..+...|...+|+++++||+|+|+.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFN-RNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHH-HHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence 45789999999999999998876 7899999998876665 344444543 45777888899988899999999988
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeCC--CCCChHHHHHHH
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQP--VYKHEEAQEEHW 126 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~--~~~~~~el~~~~ 126 (402)
++|+ ++..+++++.++|||||.++++++. ...........|
T Consensus 124 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 166 (267)
T 3kkz_A 124 IYNI--GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFW 166 (267)
T ss_dssp GGGT--CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHH
T ss_pred ceec--CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHH
Confidence 6666 7899999999999999999998632 222334445555
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=124.12 Aligned_cols=134 Identities=18% Similarity=0.248 Sum_probs=99.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCC---CCCC-CcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPF---DTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~---~~~~-~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..|++.|. +|+++| ++.+++.+.+++.+.......+.+ +..+ .+||+|+|..+++
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~- 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGI-----EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL- 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-
T ss_pred CEEEEeCCCCCHHHHHHHHCCC-----EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-
Confidence 6799999999999999999986 566776 567888888885533333222222 3334 4699999999998
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeCh--------------------------------hhHHHHHHHHHhcCceEE
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------------------------DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--------------------------------~~~~~~~~~~~~~~w~~~ 378 (402)
.. ++..+|.++.|+|||||++++.+.. ...+.+..++++-.+++.
T Consensus 128 ~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 128 HQ---DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp SS---CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred hh---hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence 33 4689999999999999999998641 146889999999999988
Q ss_pred EeecCCCCCC---ceEEEEEEec
Q 015704 379 LRETAEGPHA---SYRILTADKR 398 (402)
Q Consensus 379 ~~~~~~~~~~---~~~~l~~~k~ 398 (402)
.......+.. ...+++++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 205 SLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EEECCCCTTCSSCSCEEEEEEEC
T ss_pred EEecCCCCCCCCceeEEEEeecC
Confidence 7655222222 3567777774
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=126.13 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=100.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEcc-cc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAG-LF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~~-~~ 328 (402)
.+|||+|||+|.++..|++.+. +++.+| ++.+++.+.++ ++ +..+..-.+.+ +++++||+|+|.. +|
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~-----~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~~l 112 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL-NINRKFDLITCCLDST 112 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC-CCSCCEEEEEECTTGG
T ss_pred CeEEEeCCCCCHHHHHHHHCCC-----cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccC-CccCCceEEEEcCccc
Confidence 4699999999999999999986 677777 56777766655 22 23333222332 2458999999998 99
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------------------------------------------
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------------------------------------------ 360 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------------------------------------------ 360 (402)
+|+.+..++..+|.++.|+|||||+++++...
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYK 192 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccc
Confidence 99965456789999999999999999985211
Q ss_pred ----------hhHHHHHHHHHhcCceEEEeecCC-----CCCCceEEEEEEec
Q 015704 361 ----------DVMDELQEIGKAMGWHVTLRETAE-----GPHASYRILTADKR 398 (402)
Q Consensus 361 ----------~~~~~~~~~~~~~~w~~~~~~~~~-----~~~~~~~~l~~~k~ 398 (402)
...+.++.++++-.+++......+ .+..+..+++|+|+
T Consensus 193 ~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 193 RFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred ccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 146788889999999877654331 22335668888885
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-14 Score=132.98 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=79.0
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--CCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--PYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l--p~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.++++ ..+...|.... |+++++||+|+|+.++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l 111 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMI-----KFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFV 111 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHH-----HHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCG
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHH-----HHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCch
Confidence 35679999999999999888765 788998886544 445444 44555665554 7888999999999887
Q ss_pred ccccc-ChHHHHHHHHHhcCCCeEEEEEeCCCCCChHH
Q 015704 85 INWTR-DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 121 (402)
Q Consensus 85 ~~~~~-d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~e 121 (402)
+|+.. +...+++++.++|||||.+++.++ ......+
T Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~ 148 (240)
T 3dli_A 112 EHLDPERLFELLSLCYSKMKYSSYIVIESP-NPTSLYS 148 (240)
T ss_dssp GGSCGGGHHHHHHHHHHHBCTTCCEEEEEE-CTTSHHH
T ss_pred hhCCcHHHHHHHHHHHHHcCCCcEEEEEeC-CcchhHH
Confidence 77652 238999999999999999999974 4444333
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=125.47 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=89.5
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+.. ..+...|...+|+++++||+|+|+.++
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 124 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFN-ENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI 124 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChH
Confidence 4679999999999999888764 7899999998776665 444445544 457778888999989999999999886
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC--CCCCChHHHHHHHH
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ--PVYKHEEAQEEHWK 127 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~--~~~~~~~el~~~~~ 127 (402)
+|+ ++..+++++.++|||||.++++++ .......+....|.
T Consensus 125 ~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~ 167 (257)
T 3f4k_A 125 YNI--GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWM 167 (257)
T ss_dssp CCC--CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHH
T ss_pred hhc--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHH
Confidence 665 789999999999999999999863 12233444555554
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-14 Score=126.74 Aligned_cols=134 Identities=20% Similarity=0.259 Sum_probs=96.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-CcccccccCCCCCCCCCCcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-GLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-g~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~ 333 (402)
.+|||+|||+|.++..|++++. .|+++| ++.+++.+.++ ++ .......+.++ .+++||+|+|..+++|+.+
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF-----DVDATDGSPELAAEASRRLGR-PVRTMLFHQLD-AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHTS-CCEECCGGGCC-CCSCEEEEEECSCGGGSCH
T ss_pred CcEEEECCCCCHHHHHHHHcCC-----eEEEECCCHHHHHHHHHhcCC-ceEEeeeccCC-CCCcEEEEEecCchhhcCH
Confidence 4699999999999999999976 566666 56777777776 33 22222223334 3489999999999999872
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEeCh---------------hhHHHHHHHHHhcC-ceEEEeecCCC---CCCceEEEE
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRDSI---------------DVMDELQEIGKAMG-WHVTLRETAEG---PHASYRILT 394 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~~~---------------~~~~~~~~~~~~~~-w~~~~~~~~~~---~~~~~~~l~ 394 (402)
.++..+|.++.|+|||||+++++... ...+.++.++++-. |++.......+ ......+|+
T Consensus 118 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~~wl~ 196 (211)
T 3e23_A 118 -DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLH 196 (211)
T ss_dssp -HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEEEEEE
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCceEEE
Confidence 35689999999999999999998432 24678888888888 88765443222 223355665
Q ss_pred EEe
Q 015704 395 ADK 397 (402)
Q Consensus 395 ~~k 397 (402)
+.+
T Consensus 197 ~~~ 199 (211)
T 3e23_A 197 VSV 199 (211)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-14 Score=125.80 Aligned_cols=120 Identities=11% Similarity=0.018 Sum_probs=86.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC------------------cccccccCCCCCCCCC
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG------------------LIGVMHDWCEPFDTYP 316 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg------------------~~~~~~~~~~~~~~~~ 316 (402)
.+|||+|||+|.++..|+++|+ +|+++| ++.|++.+.++. -+..++.-.+.+++.+
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~-----~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY-----HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC-----EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC-----eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 3699999999999999999987 777877 678888887661 1233333233333222
Q ss_pred -CcccEEEEccccccccccCCHHHHHHHhhhhccCCcE-EEEE-eCh----------hhHHHHHHHHHhcCceEEEeec
Q 015704 317 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGH-VYIR-DSI----------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 317 -~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~-~~~~-~~~----------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
++||+|++..+|.|++. .+...++.||.|+|||||+ ++++ +-. ...+.++.++.+ .|++.....
T Consensus 99 ~~~fD~v~~~~~l~~l~~-~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~ 175 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGG 175 (203)
T ss_dssp HHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEE
T ss_pred CCCEEEEEECcchhhCCH-HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEecc
Confidence 58999999999999873 3456899999999999998 3333 210 135678888887 888765443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=122.05 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=96.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-----------cccccccCCCCCCCCC-CcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----------LIGVMHDWCEPFDTYP-RTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-----------~~~~~~~~~~~~~~~~-~sfD~v 322 (402)
.+|||+|||+|.++..|++++. ..+|+++| ++.+++.+.++- -+..+....+. .+++ ++||+|
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V 106 (219)
T 3jwg_A 31 KKVIDLGCGEGNLLSLLLKDKS---FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY-RDKRFSGYDAA 106 (219)
T ss_dssp CEEEEETCTTCHHHHHHHTSTT---CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS-CCGGGTTCSEE
T ss_pred CEEEEecCCCCHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc-cccccCCCCEE
Confidence 4699999999999999999862 13566666 566777776651 12333322222 3344 799999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChh----------------------hHHHHH----HHHHhcCce
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------------VMDELQ----EIGKAMGWH 376 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~----------------------~~~~~~----~~~~~~~w~ 376 (402)
+|..+++|+.+. +...+|.++.|+|||||.++.+.... ..+.++ .++.+-.++
T Consensus 107 ~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~ 185 (219)
T 3jwg_A 107 TVIEVIEHLDEN-RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS 185 (219)
T ss_dssp EEESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred EEHHHHHhCCHH-HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence 999999999742 34699999999999999887764321 233444 778888888
Q ss_pred EEEeec---CCCCCCceEEEEEEec
Q 015704 377 VTLRET---AEGPHASYRILTADKR 398 (402)
Q Consensus 377 ~~~~~~---~~~~~~~~~~l~~~k~ 398 (402)
+....- ...-..+..+.+++|+
T Consensus 186 v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 186 VRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEEecCCccccCCCCeEEEEEecc
Confidence 877632 1223356889999885
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=132.43 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=88.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCC-CCCC-CcccEEEEcccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPF-DTYP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~-~~~~-~sfD~v~~~~~~~~~~ 332 (402)
.+|||+|||+|.++..|+++|+ +|+++| ++.+++.+.++ +..+....+.+ .+++ ++||+|+|.++++|+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~ 115 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI-----ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD 115 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC-----CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC
T ss_pred CeEEEEeCCCCHHHHHHHhCCC-----cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCC
Confidence 4599999999999999999986 566666 56788888777 33333222222 2567 8999999999999998
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEEEeChh-------------------hHHHHHHHHHhcCceEEEee
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYIRDSID-------------------VMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~~~~~~-------------------~~~~~~~~~~~~~w~~~~~~ 381 (402)
+ .+...+|.++.|+|||||++++..... ..+.++.++.+-.+++....
T Consensus 116 ~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 116 P-ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp G-GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred c-HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 4 356899999999999999999986431 13567777777777755443
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=125.70 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCC
Q 015704 235 KYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPF 312 (402)
Q Consensus 235 ~~w~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~ 312 (402)
..|....+.+.+.+......-.+|||+|||+|.++..|++++. +|+++| ++.+++.+.++.- +..+..-.+.+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~ 95 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-----DTAGLELSEDMLTHARKRLPDATLHQGDMRDF 95 (239)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS-----EEEEEESCHHHHHHHHHHCTTCEEEECCTTTC
T ss_pred hhHHHHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC-----cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHc
Confidence 4455544444433321112234699999999999999999875 566776 5678888777632 33333323333
Q ss_pred CCCCCcccEEEEc-cccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 313 DTYPRTYDLLHAA-GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 313 ~~~~~sfD~v~~~-~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+ ++++||+|+|. ++++|+.+..++..+|.++.|+|||||++++++
T Consensus 96 ~-~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 96 R-LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp C-CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred c-cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 3 36799999964 599999765567899999999999999999974
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=120.86 Aligned_cols=132 Identities=19% Similarity=0.283 Sum_probs=98.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc--ccccccCCCCCCCCCCcccEEEEcccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFSVES 332 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~--~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~ 332 (402)
.+|||+|||+|.++..|++++. +|+++| ++.+++.+.++.- +..+....+.++ ++++||+|+|..+++|+.
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAGR-----TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFE-VPTSIDTIVSTYAFHHLT 120 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTTC-----EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCC-CCSCCSEEEEESCGGGSC
T ss_pred CeEEEeCCCCCHHHHHHHhCCC-----eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcC-CCCCeEEEEECcchhcCC
Confidence 4699999999999999999976 677777 5677877777632 333433333332 348999999999999998
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEEEeCh----h---------------------------hHHHHHHHHHhcCceEEEee
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYIRDSI----D---------------------------VMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~~~~~----~---------------------------~~~~~~~~~~~~~w~~~~~~ 381 (402)
+. ....+|.|+.|+|||||++++.++. . ..+.++.++++-.+++....
T Consensus 121 ~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 121 DD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp HH-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hH-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 63 1234999999999999999999632 0 13677888999999888766
Q ss_pred cCCCCCCceEEEEEEec
Q 015704 382 TAEGPHASYRILTADKR 398 (402)
Q Consensus 382 ~~~~~~~~~~~l~~~k~ 398 (402)
.. .-..++.++|+
T Consensus 200 ~~----~~~w~~~~~~~ 212 (220)
T 3hnr_A 200 LN----HFVWVMEATKQ 212 (220)
T ss_dssp CS----SSEEEEEEEEC
T ss_pred cc----ceEEEEeehhh
Confidence 53 35677777775
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-14 Score=120.24 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=94.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEcccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~ 332 (402)
.+|||+|||+|.++..|++.+. +|+++| ++.+++.+.++.- +..+.. + .+++ ++||+|+|..+++|+.
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~v~~~~~---d-~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEFAT-----KLYCIDINVIALKEVKEKFDSVITLSD---P-KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTTEE-----EEEEECSCHHHHHHHHHHCTTSEEESS---G-GGSCTTCEEEEEEESCSTTCS
T ss_pred CeEEEECCCCCHHHHHHHhhcC-----eEEEEeCCHHHHHHHHHhCCCcEEEeC---C-CCCCCCceEEEEEccchhccc
Confidence 4699999999999999999853 777877 5778888877621 223322 2 4466 7999999999999986
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEEEeCh-------------hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYIRDSI-------------DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~~~~~-------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
++..+|.++.|+|||||++++.+.. ...+.++.+++ .|++....... .....+++.|+
T Consensus 90 ---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~---~~~~~l~~~~~ 160 (170)
T 3i9f_A 90 ---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPT---PYHFGLVLKRK 160 (170)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSS---TTEEEEEEEEC
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCC---CceEEEEEecC
Confidence 4689999999999999999999632 12567777777 88877665532 24667777663
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=127.40 Aligned_cols=102 Identities=18% Similarity=0.316 Sum_probs=82.5
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+.+ ..+...|...+++++++||+|+++.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAR-ENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 45679999999999998888754 6899999988776655 333344443 45677788888998999999999887
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.|+ .++..+++++.++|||||.+++..
T Consensus 115 l~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHL-QSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhc-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 5555 488999999999999999999985
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=127.09 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=74.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC--cccccccCCCCCCCCCCcccEEEEccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG--LIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 333 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg--~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~ 333 (402)
+|||+|||+|.++..|++.+. +|+++| ++.+++.+.++. -+..++...+.+ +.+++||+|+|.++|+|+++
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN-----DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS-----CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS
T ss_pred cEEEECCCCCHHHHHHHHhCC-----cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC
Confidence 499999999999999999986 566666 567777777763 233343333343 22389999999999999874
Q ss_pred cCCHHHHHHHhh-hhccCCcEEEEEeC
Q 015704 334 RCNMSTIMLEMD-RMLRPGGHVYIRDS 359 (402)
Q Consensus 334 ~~~~~~~l~e~~-RvLrpgG~~~~~~~ 359 (402)
+..+|.|+. |+|||||+++++++
T Consensus 119 ---~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 119 ---PVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp ---HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 589999999 99999999999974
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=122.23 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=82.4
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
.+.+|||+|||+|.++..+++. .++++|+++.++ +.++++.....+...|+..+++++++||+|+++.+++|+
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 115 (203)
T 3h2b_A 41 VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLV-----ELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM 115 (203)
T ss_dssp CCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHH-----HHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHH-----HHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence 3679999999999999988876 789999887655 444454445667788888889888999999999887777
Q ss_pred c-cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 88 T-RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 88 ~-~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. .++..+++++.++|||||.++++.+
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~i~~~ 142 (203)
T 3h2b_A 116 GPGELPDALVALRMAVEDGGGLLMSFF 142 (203)
T ss_dssp CTTTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 5 3678999999999999999999964
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-14 Score=126.54 Aligned_cols=102 Identities=9% Similarity=-0.037 Sum_probs=77.3
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHH------------cCCCcEEEeccccCCCCCC-CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALE------------RGAPAMVAAFATRRLPYPS-QA 74 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~------------~~~~~~~~~~d~~~lp~~~-~s 74 (402)
++.+|||+|||+|..+..|+++ .|+|+|+|+.++..+..+.... ......+.++|+..+++++ ++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~ 101 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 101 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence 5679999999999999988875 7999999988876554221100 1234567778888888765 79
Q ss_pred eeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEE
Q 015704 75 FDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~ 111 (402)
||+|++..+++++..+ ...++++++|+|||||.+++.
T Consensus 102 fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 102 CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999998776666532 357899999999999985544
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=122.37 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=92.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc--ccccccCCCCCCCCC-CcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL--IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~ 331 (402)
.+|||+|||+|.++..|++.+. +|+.+| ++.+++.+.++|. +..++.-.+.+ ++ ++||+|+|..+++|+
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~ 120 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD-----RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW--TPDRQWDAVFFAHWLAHV 120 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC--CCSSCEEEEEEESCGGGS
T ss_pred CeEEEECCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC--CCCCceeEEEEechhhcC
Confidence 3799999999999999999976 666666 5678888877764 33343333333 45 899999999999999
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeCh----------------------------------hhHHHHHHHHHhcCceE
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------------------DVMDELQEIGKAMGWHV 377 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------------------------~~~~~~~~~~~~~~w~~ 377 (402)
.+. ....+|.++.|+|||||.+++.+.. ...+.+..++++-.|++
T Consensus 121 ~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 199 (218)
T 3ou2_A 121 PDD-RFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199 (218)
T ss_dssp CHH-HHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CHH-HHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence 852 3479999999999999999999541 13467888888888887
Q ss_pred EEeecC
Q 015704 378 TLRETA 383 (402)
Q Consensus 378 ~~~~~~ 383 (402)
......
T Consensus 200 ~~~~~~ 205 (218)
T 3ou2_A 200 SVDEVH 205 (218)
T ss_dssp EEEEEE
T ss_pred Eeeecc
Confidence 766553
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=118.05 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=75.8
Q ss_pred CCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC-CCCCCeeEEEecCc
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP-YPSQAFDLIHCSRC 83 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp-~~~~sfDlI~s~~~ 83 (402)
-.++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+.+.+.. ..+...+.+.++ +.+++||+|+++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~-~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTS-QRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 346789999999999999999876 7999999998887665 334444443 335555555543 45688999998743
Q ss_pred cccc--------ccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 84 RINW--------TRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 84 ~~~~--------~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.++. ..+...+++++.++|||||.+++...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 3332 123457899999999999999998654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=119.37 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=86.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|++.+. +|+.+| ++.+++.+.++ ++ +..+..-.+.++ ++++||+|+|..++
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~l 107 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY-----DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT-FDRQYDFILSTVVL 107 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC-CCCCEEEEEEESCG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC-CCCCceEEEEcchh
Confidence 3799999999999999999976 566665 45566555443 33 333332233333 36899999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC--------------hhhHHHHHHHHHhcCceEEEeecC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS--------------IDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~--------------~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
+|+.. .++..+|.++.|+|||||++++.+. ....+.+++++.. |++....+.
T Consensus 108 ~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 108 MFLEA-KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp GGSCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 99873 3678999999999999999887642 1135677788777 888776543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-13 Score=125.23 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=88.2
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|+++ +. .|+++| ++.+++.+.++. -+..++.-.+.+ ++| ++||+|+|..++
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l 130 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKYGA-----HTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-EFPENNFDLIYSRDAI 130 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-CCCTTCEEEEEEESCG
T ss_pred CEEEEECCCCCHHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-CCCCCcEEEEeHHHHH
Confidence 46999999999999999997 55 667776 567888887764 233343333343 466 899999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------------hhHHHHHHHHHhcCceEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------DVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------------~~~~~~~~~~~~~~w~~~~~ 380 (402)
+|+.+ .++..+|.++.|+|||||++++.+.. ...+.+..++.+-.++....
T Consensus 131 ~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 203 (266)
T 3ujc_A 131 LALSL-ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVS 203 (266)
T ss_dssp GGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HhcCh-HHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 99942 35689999999999999999999621 12456667777777766543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-14 Score=131.23 Aligned_cols=98 Identities=8% Similarity=0.143 Sum_probs=74.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
+|||+|||+|.++..|+++.. -....|+++| ++.|++.|.++ +. +..++ .++..+| ..||+|+|..+
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~-~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~---~D~~~~~~~~~d~v~~~~~ 148 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIH-HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDIRDIAIENASMVVLNFT 148 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCC-SSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCTTTCCCCSEEEEEEESC
T ss_pred EEEEEeCCCCHHHHHHHHhcC-CCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEee---cccccccccccccceeeee
Confidence 599999999999999987621 0123677887 67888888765 33 33333 3344566 78999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|+++. +...+|.|+.|+|||||+|+++|.
T Consensus 149 l~~~~~~-~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 149 LQFLEPS-ERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeecCch-hHhHHHHHHHHHcCCCcEEEEEec
Confidence 9998742 456899999999999999999964
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=124.68 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=91.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..|++.|+ +|+++| ++.+++.+.++.. +..+....+.++ ++ ++||+|+|.++++|
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY-----KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLP-FENEQFEAIMAINSLEW 128 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCS-SCTTCEEEEEEESCTTS
T ss_pred CeEEEEcCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCC-CCCCCccEEEEcChHhh
Confidence 3699999999999999999986 566666 5677888877633 333433334433 55 89999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------------hhHHHHHHHHHhcCceEEEeec
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
+. ++..+|.++.|+|||||++++.+.. .....++.++.+-.+++.....
T Consensus 129 ~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 129 TE---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SS---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cc---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 86 4689999999999999999998621 2245788899999999876553
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-13 Score=124.72 Aligned_cols=103 Identities=27% Similarity=0.367 Sum_probs=83.3
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+.. ..+...|...+|+++++||+|+++.+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQAN-ARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES 138 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHhcCCCcceEEEECccccCCCCCCCccEEEEech
Confidence 35679999999999998888753 7999999988776554 333344443 45677788889999899999999888
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+ .++..+++++.++|||||.+++.++
T Consensus 139 l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 139 LHHM-PDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TTTS-SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhC-CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 6665 4889999999999999999999864
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=130.77 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=84.0
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+.. ..+...|...+|+++++||+|+++.+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 194 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGN-RRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES 194 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence 35679999999999999888764 7899999988776665 344445543 55777888899998899999999888
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+ ++..+++++.++|||||.+++.++
T Consensus 195 l~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 195 TMYV--DLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp GGGS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 6665 589999999999999999999864
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-13 Score=120.73 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=80.5
Q ss_pred cCCCCCeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..++.+|||+|||+|.++..+ .. .++++|+++.++. .++++.....+...|...+|+++++||+|+++.+++
T Consensus 33 ~~~~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~~-----~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 106 (211)
T 2gs9_A 33 LLPPGESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAMLA-----VGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLE 106 (211)
T ss_dssp TCCCCSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHHH-----HHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTT
T ss_pred hcCCCCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHHH-----HHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhh
Confidence 3346789999999999999888 55 7899999876553 344433344567778888898889999999988766
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+ +++..+++++.++|||||.++++++
T Consensus 107 ~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 107 FV-EDVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp TC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hc-CCHHHHHHHHHHHcCCCCEEEEEec
Confidence 65 4889999999999999999999975
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-13 Score=123.98 Aligned_cols=101 Identities=13% Similarity=0.186 Sum_probs=77.9
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+... ....+ ...+...|...++++ ++||+|+|+.++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~-~~~~~~~d~~~~~~~-~~fD~v~~~~~l 119 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNR-FRGNL-KVKYIEADYSKYDFE-EKYDMVVSALSI 119 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH-TCSCT-TEEEEESCTTTCCCC-SCEEEEEEESCG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-hccCC-CEEEEeCchhccCCC-CCceEEEEeCcc
Confidence 46689999999999999888764 788999988766444311 11112 455777888888877 899999999886
Q ss_pred cccccChH--HHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDG--ILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~--~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|+. ++. .+++++.++|||||.++++++
T Consensus 120 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 120 HHLE-DEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 6664 443 699999999999999999864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-13 Score=125.27 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=82.0
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+.. ..+...|+..+++ +++||+|+|..+
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGA 112 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHH-HHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCC
Confidence 35679999999999998888753 7899999998886665 344444543 4577778888887 789999999887
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++|+. ++..+++++.++|||||.++++.
T Consensus 113 ~~~~~-~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 113 TWIAG-GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp GGGTS-SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hHhcC-CHHHHHHHHHHHcCCCeEEEEec
Confidence 66654 88999999999999999999985
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=122.03 Aligned_cols=134 Identities=19% Similarity=0.097 Sum_probs=97.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|++.+. ....|+++| ++.+++.+.++ |+ +..+....+.++ ++ ++||+|+|..+
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVG--EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP-LPDNTVDFIFMAFT 115 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHT--TTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS-SCSSCEEEEEEESC
T ss_pred CEEEEEecCCCHHHHHHHHHhC--CCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC-CCCCCeeEEEeehh
Confidence 3699999999999999998851 011566666 45666666554 32 333333333433 56 79999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh-------------hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-------------DVMDELQEIGKAMGWHVTLRETAEGPHASYRILT 394 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~ 394 (402)
++|+.+ +..+|.++.|+|||||++++.+.. ...+.++.++++-.|++....... ....+++
T Consensus 116 l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~---~~~~~~~ 189 (219)
T 3dh0_A 116 FHELSE---PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG---KYCFGVY 189 (219)
T ss_dssp GGGCSS---HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET---TTEEEEE
T ss_pred hhhcCC---HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC---CceEEEE
Confidence 999864 689999999999999999998621 236788999999999977655432 2567777
Q ss_pred EEec
Q 015704 395 ADKR 398 (402)
Q Consensus 395 ~~k~ 398 (402)
++|+
T Consensus 190 ~~k~ 193 (219)
T 3dh0_A 190 AMIV 193 (219)
T ss_dssp EECC
T ss_pred EEec
Confidence 7774
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-13 Score=121.96 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=83.6
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecC
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+. ...+...|...+++++++||+|+++.
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 41 GITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIAL-KNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp CCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHhccccCceEEEEcCHHHCCCCcccccEEEECc
Confidence 334449999999999999888764 7899999988776665 33333443 34577788888999999999999998
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|+ .++..+++++.++|||||.++++..
T Consensus 120 ~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 120 SVFFW-EDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp CGGGC-SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hHhhc-cCHHHHHHHHHHhCCCCCEEEEEec
Confidence 86666 5899999999999999999999863
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-14 Score=139.31 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=80.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHc----C----CCcEEEeccccCC------C
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER----G----APAMVAAFATRRL------P 69 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~----~----~~~~~~~~d~~~l------p 69 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+........ + ....+...|+..+ |
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46789999999999988777653 79999999887765553322110 2 3455777787776 8
Q ss_pred CCCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 70 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 70 ~~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++++||+|+++.++++ ..++..+++++.++|||||+++++..
T Consensus 162 ~~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNL-STNKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp CCTTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhc-CCCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 88999999999877555 45899999999999999999999853
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-13 Score=124.50 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=81.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+....+...|+..++++ ++||+|+++.+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 98 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF 98 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHH-HHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHhcCCceEEEEcchhhcCcC-CCeeEEEECCh
Confidence 35689999999999999988864 6899999987775554 33333333455777888888875 69999999887
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+ .++..+++++.++|||||++++..+
T Consensus 99 l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 127 (284)
T 3gu3_A 99 LLHM-TTPETMLQKMIHSVKKGGKIICFEP 127 (284)
T ss_dssp GGGC-SSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhcC-CCHHHHHHHHHHHcCCCCEEEEEec
Confidence 5555 5889999999999999999999864
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=123.08 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=77.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+++. .++++|+++.++. .++++.. ...+...|++.+ +++++||+|+|+.+++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~-----~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~ 115 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAIS-----HAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEH 115 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHH-----HHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHH-----HHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHh
Confidence 5678999999999999999876 7899999876553 3443322 445666777776 46789999999988666
Q ss_pred cccChHHHHHHHH-HhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVN-RMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~-r~LkpgG~li~~~~ 113 (402)
+. ++..+++++. ++|||||.++++++
T Consensus 116 ~~-~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 116 ID-DPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp CS-SHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hc-CHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 64 8899999999 99999999999974
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=128.16 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=76.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++.|. .|+++| ++.+++.+.++ |+ +..+....+.+++++ ++||+|+|..
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 144 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH-----QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA 144 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEES
T ss_pred CEEEEeCCcchHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECc
Confidence 4699999999999999999986 566666 46677666654 33 334444445555566 8999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+++|+++ +..+|.|+.|+|||||++++.+.
T Consensus 145 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 145 VLEWVAD---PRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp CGGGCSC---HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhcccC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999874 58999999999999999999874
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.7e-13 Score=118.41 Aligned_cols=130 Identities=17% Similarity=0.252 Sum_probs=92.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
+|||+|||+|.++..|+++. ...|+++| ++.+++.+.++ |+ +..++...+.++ ++ ++||+|+|..+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~ 120 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQS----DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-IEDNYADLIVSRGS 120 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHS----EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-SCTTCEEEEEEESC
T ss_pred EEEEECCCCCHHHHHHHHcC----CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-CCcccccEEEECch
Confidence 79999999999999999871 23667776 56677666665 33 334443344433 66 89999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------------------------hhHHHHHHHHHhcCceE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------------------------DVMDELQEIGKAMGWHV 377 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------------------------~~~~~~~~~~~~~~w~~ 377 (402)
++|+. ++..+|.++.|+|||||++++.+.. ...+.++.++++-.++.
T Consensus 121 l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 197 (219)
T 3dlc_A 121 VFFWE---DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS 197 (219)
T ss_dssp GGGCS---CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSS
T ss_pred Hhhcc---CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCe
Confidence 99985 4689999999999999999998521 12366777888888875
Q ss_pred EEeecCCCCCCceEEEEEEec
Q 015704 378 TLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 378 ~~~~~~~~~~~~~~~l~~~k~ 398 (402)
....... ...+++..|+
T Consensus 198 v~~~~~~----~~~~~~~~k~ 214 (219)
T 3dlc_A 198 YEIILGD----EGFWIIISKT 214 (219)
T ss_dssp EEEEEET----TEEEEEEBCC
T ss_pred EEEEecC----CceEEEEecc
Confidence 4433321 2345555553
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=126.86 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=78.9
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHH-----------------HcCCCcEEEeccccCCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL-----------------ERGAPAMVAAFATRRLPY 70 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~-----------------~~~~~~~~~~~d~~~lp~ 70 (402)
++.+|||+|||+|..+..|++. .|+|+|+++.++..+..+... ..+....+.++|+..+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~ 147 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR 147 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence 5679999999999999999876 799999998877555322110 011344577889888887
Q ss_pred CC-CCeeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 71 PS-QAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 71 ~~-~sfDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++ ++||+|++..+++++..+ ...+++++.++|||||.+++.+
T Consensus 148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 64 899999988776666533 4679999999999999997654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-13 Score=125.29 Aligned_cols=98 Identities=21% Similarity=0.361 Sum_probs=81.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..+++. .++++|+++.++. .++++.... +...|...+|+++++||+|++..+++|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~-----~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLE-----VAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHH-----HHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHH-----HHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence 6789999999999999988876 6889998876654 343333222 6667888889888999999998878888
Q ss_pred ccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 88 TRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 88 ~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..++..+++++.++|||||.++++++
T Consensus 128 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 128 VENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 77899999999999999999999864
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=126.33 Aligned_cols=103 Identities=18% Similarity=0.287 Sum_probs=84.1
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.. .....+. ...+...|...+|+++++||+|++..+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE-YNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 159 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence 35679999999999999888764 78999999887766653 3333443 245777788899999999999999988
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+. ++..+++++.++|||||.+++.++
T Consensus 160 l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 160 FLHSP-DKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp GGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 77765 789999999999999999999864
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-13 Score=123.77 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=79.9
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.... ........+...|...+|+++++||+|+++.+++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~- 115 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH- 115 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG-
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchh-
Confidence 45679999999999999988876 7889999887665443222 1112334577778888998889999999987754
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEE
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+.+++..+++++.++|||||.+++.
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 4558899999999999999999998
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=123.83 Aligned_cols=100 Identities=22% Similarity=0.249 Sum_probs=81.5
Q ss_pred CCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc--CCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER--GAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~--~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
..++.+|||+|||+|.++..+++. .++++|+++.++ +.++++ .....+...|...+|+++++||+|+|+.+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 125 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMI-----QKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINS 125 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHH-----HHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHH-----HHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcCh
Confidence 346789999999999999988876 788898887655 444443 23345677788889988999999999988
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+ .++..+++++.++|+|||.++++++
T Consensus 126 l~~~-~~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 126 LEWT-EEPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp TTSS-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Hhhc-cCHHHHHHHHHHHhCCCeEEEEEEc
Confidence 6665 5889999999999999999999963
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-13 Score=123.84 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=79.7
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHc--CCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER--GAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~--~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++.++.. ++++ .....+...|+..+|+++++||+|+|+.++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 118 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTE-----AKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLAL 118 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH-----HHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHH-----HHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhh
Confidence 5679999999999999988875 68899998766543 3333 234457778888899988999999999876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|+ .++..+++++.++|||||.+++++
T Consensus 119 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 119 HYI-ASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp GGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhh-hhHHHHHHHHHHHcCCCcEEEEEe
Confidence 665 589999999999999999999985
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-13 Score=126.66 Aligned_cols=106 Identities=20% Similarity=0.167 Sum_probs=83.5
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCC-CCCCCeeEEEe
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP-YPSQAFDLIHC 80 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp-~~~~sfDlI~s 80 (402)
.+..++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+. ...+...|...++ +++++||+|+|
T Consensus 64 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 142 (285)
T 4htf_A 64 EMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAK-QAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILF 142 (285)
T ss_dssp HTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEE
T ss_pred hcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEE
Confidence 34455679999999999999988876 7899999988776555 33333343 2346777887777 77899999999
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.+++|+ +++..+++++.++|||||.+++..+
T Consensus 143 ~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 143 HAVLEWV-ADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp ESCGGGC-SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred Cchhhcc-cCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 8886665 5889999999999999999999963
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=124.31 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=93.0
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCCCCCC-CcccEEEEccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.-.+|||+|||+|.++..|++++. ..|+.+| ++.+++.+.++. -+..+....+.+ +++ ++||+|+|..+
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~ 167 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY----ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-TLPPNTYDLIVIQWT 167 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC----SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-CCCSSCEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc----CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC-CCCCCCeEEEEEcch
Confidence 345799999999999999998853 2466666 567787777663 233333333343 356 79999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------hhHHHHHHHHHhcCceEEEeecC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
++|+.+ .++..+|.++.|+|||||++++.+.. ...+.++.++++-.|++......
T Consensus 168 l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 168 AIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred hhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence 999964 35689999999999999999999741 12478888888888987766543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-13 Score=124.14 Aligned_cols=114 Identities=15% Similarity=0.232 Sum_probs=83.7
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++. +. +|+++| ++.+++.+.++ |+ +..+....+.+++ +++||+|+|..
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDHGI-----TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVG 111 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECC
Confidence 36999999999999999987 44 566666 46677666544 43 3444433344443 68999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------------hhHHHHHHHHHhcCceEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------------~~~~~~~~~~~~~~w~~~ 378 (402)
+++|+.+ +..+|.|+.|+|||||++++.++. .....+..++.+..++..
T Consensus 112 ~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 182 (256)
T 1nkv_A 112 ATWIAGG---FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 182 (256)
T ss_dssp CGGGTSS---SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred ChHhcCC---HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeE
Confidence 9999874 589999999999999999998642 012566677777777653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-13 Score=135.99 Aligned_cols=144 Identities=10% Similarity=0.088 Sum_probs=103.3
Q ss_pred hHHhhHHHHHHHHHHHHhcc--cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCccccc-
Q 015704 230 FKAESKYWNEIIESYVRALH--WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVM- 305 (402)
Q Consensus 230 ~~~~~~~w~~~~~~y~~~~~--~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~- 305 (402)
+......|......+.+.+. .....-.+|||+|||+|.++..|+++|. +|+++| ++++++.+.++|+-...
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-----~v~gvD~s~~~~~~a~~~~~~~~~~ 155 (416)
T 4e2x_A 81 HSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-----RHLGFEPSSGVAAKAREKGIRVRTD 155 (416)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-----EEEEECCCHHHHHHHHTTTCCEECS
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-----cEEEECCCHHHHHHHHHcCCCccee
Confidence 33444556666655544332 1112234699999999999999999986 677777 67889999988762111
Q ss_pred ---ccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--------------------h
Q 015704 306 ---HDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------------D 361 (402)
Q Consensus 306 ---~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--------------------~ 361 (402)
.+..+. .+++ ++||+|+|.++|+|++ ++..+|.|+.|+|||||++++..+. .
T Consensus 156 ~~~~~~~~~-l~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (416)
T 4e2x_A 156 FFEKATADD-VRRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLF 231 (416)
T ss_dssp CCSHHHHHH-HHHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEEC
T ss_pred eechhhHhh-cccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcC
Confidence 111111 1245 8999999999999997 4799999999999999999998642 1
Q ss_pred hHHHHHHHHHhcCceEEEeec
Q 015704 362 VMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 362 ~~~~~~~~~~~~~w~~~~~~~ 382 (402)
..+.++.++++-.+++.....
T Consensus 232 s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 232 SATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp CHHHHHHHHHHTTEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEE
Confidence 246788889998998876654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-13 Score=116.29 Aligned_cols=137 Identities=18% Similarity=0.128 Sum_probs=89.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEc-c
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAA-G 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~-~ 326 (402)
.+|||+|||+|.++..|++++. .|+++| ++.+++.+.++ |+ +..+++..+.+..++ ++||+|+++ .
T Consensus 24 ~~vLDiGcG~G~~~~~la~~~~-----~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGLSK-----KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLG 98 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTTSS-----EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCC
Confidence 3599999999999999999876 566666 56677666554 43 444554445544455 799999887 3
Q ss_pred ccccc-----cccCCHHHHHHHhhhhccCCcEEEEEeC------hhhHHHHHHHHHhcC---ceEEEeecCCCCCCceEE
Q 015704 327 LFSVE-----SKRCNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMG---WHVTLRETAEGPHASYRI 392 (402)
Q Consensus 327 ~~~~~-----~~~~~~~~~l~e~~RvLrpgG~~~~~~~------~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~ 392 (402)
.+.+. ....+...+|.|+.|+|||||++++..- ....+.+.+.+..+. |++.....-+....+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 178 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFL 178 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEE
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeE
Confidence 33320 0112345789999999999999999742 234456666666665 887776665443445455
Q ss_pred EEEEe
Q 015704 393 LTADK 397 (402)
Q Consensus 393 l~~~k 397 (402)
++..|
T Consensus 179 ~~i~~ 183 (185)
T 3mti_A 179 VMLEK 183 (185)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55444
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.2e-13 Score=125.73 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=81.2
Q ss_pred CCCCeEEEECCccchhHHHHc---cC--CceEEeCCccchHHHHHHHHHHc---CCCcEEEeccccCCCCCC------CC
Q 015704 9 RLLRVVMDAGCGVASFGAYLL---PR--NVITMSIAPKDVHENQIQFALER---GAPAMVAAFATRRLPYPS------QA 74 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~---~~--~v~~vdi~~~~~~~a~~~~a~~~---~~~~~~~~~d~~~lp~~~------~s 74 (402)
.++.+|||+|||+|.++..++ .. .++++|+++.++..+... +... .....+...|++.+++++ ++
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVI-KEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHH-HHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH-HHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 467899999999999999888 33 799999999887666533 3332 334557778888888877 89
Q ss_pred eeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 75 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
||+|+|+.+++|+ ++..+++++.++|||||.+++.
T Consensus 114 fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 114 IDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEE
Confidence 9999998875555 9999999999999999999984
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-13 Score=123.81 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=77.9
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc----ccccccCCCCCCCCCCcccEEEEccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----IGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~----~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
..-.+|||+|||+|.++..|++++. +|+++| ++.+++.+.++.- +..+..-.+.++ .+++||+|+|..+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCK-----RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEV 123 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEE-----EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESC
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccH
Confidence 3456799999999999999999864 677777 5677777776632 334443334433 2389999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|+.+......+|.++.|+|||||++++++.
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99998755556889999999999999999763
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=122.90 Aligned_cols=110 Identities=14% Similarity=0.231 Sum_probs=82.9
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++.. ++++.....+...|++.+|+ +++||+|+++.++ +
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~-----a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~l-~ 128 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEK-----ARQNYPHLHFDVADARNFRV-DKPLDAVFSNAML-H 128 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHH-----HHHHCTTSCEEECCTTTCCC-SSCEEEEEEESCG-G
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHH-----HHhhCCCCEEEECChhhCCc-CCCcCEEEEcchh-h
Confidence 35679999999999999888765 78899998766543 33333344567778888887 5799999998774 4
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHH
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~ 126 (402)
+..++..+++++.++|||||.+++.++ ......++...+
T Consensus 129 ~~~d~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~ 167 (279)
T 3ccf_A 129 WVKEPEAAIASIHQALKSGGRFVAEFG-GKGNIKYILEAL 167 (279)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEE-CTTTTHHHHHHH
T ss_pred hCcCHHHHHHHHHHhcCCCcEEEEEec-CCcchHHHHHHH
Confidence 455899999999999999999999864 333334444444
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.1e-13 Score=119.60 Aligned_cols=120 Identities=14% Similarity=0.284 Sum_probs=85.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----C-------cccccccCCCCCCCCC-CcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----G-------LIGVMHDWCEPFDTYP-RTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g-------~~~~~~~~~~~~~~~~-~sfD~v 322 (402)
.+|||+|||+|.++..|++++.. .+|+++| ++.+++.+.++ | -+..+....+ ..+++ ++||+|
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~v 106 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSFF---EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT-YQDKRFHGYDAA 106 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTTC---SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT-SCCGGGCSCSEE
T ss_pred CEEEEeCCCCCHHHHHHHhhCCC---CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc-cccccCCCcCEE
Confidence 46999999999999999987521 2566666 56777777665 1 1223332222 23344 799999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChh----------------------hHHHHH----HHHHhcCce
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------------VMDELQ----EIGKAMGWH 376 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~----------------------~~~~~~----~~~~~~~w~ 376 (402)
+|..+++|+.+ .+...+|.++.|+|||||.++++.... ..+.++ .++.+-.++
T Consensus 107 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~ 185 (217)
T 3jwh_A 107 TVIEVIEHLDL-SRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYN 185 (217)
T ss_dssp EEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEE
T ss_pred eeHHHHHcCCH-HHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCce
Confidence 99999999974 245799999999999999888886532 223344 777788888
Q ss_pred EEEe
Q 015704 377 VTLR 380 (402)
Q Consensus 377 ~~~~ 380 (402)
+...
T Consensus 186 v~~~ 189 (217)
T 3jwh_A 186 VQFQ 189 (217)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7765
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-13 Score=118.24 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=80.9
Q ss_pred CCCCeEEEECCccchhH-HHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFG-AYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~-~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|.++ ..+... .++++|+++.++..+.. .+...+....+...|+..+|+++++||+|+++.+++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN-FSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHH-HHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 35679999999999874 344333 79999999988866653 333334445567778888898889999999988777
Q ss_pred ccc-cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWT-RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~-~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. .++..+++++.++|||||.+++..+
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 764 3578999999999999999999864
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-13 Score=125.86 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=74.5
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
-.+|||+|||+|.++..|++++. .|+.+| ++.+++.+.++ |+ +..+..-.+.+ +|| ++||+|+|..
T Consensus 38 ~~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 38 NEEVLDVATGGGHVANAFAPFVK-----KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDERFHIVTCRI 111 (260)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTTCEEEEEEES
T ss_pred CCEEEEEeCCCCHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-CCCCCCEEEEEEhh
Confidence 34699999999999999999875 677777 56777766654 33 33333333443 466 8999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+++|+.+ +..+|.|+.|+|||||++++.+
T Consensus 112 ~l~~~~d---~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AAHHFPN---PASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHhcCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 9999874 6899999999999999999975
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=117.41 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+++. .++++|+++.++. .++++.. ...+...|+..++++ ++||+|+|+.+++|
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~-----~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRM-----IAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHH 118 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHH-----HHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHH-----HHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence 5679999999999999988876 7889988876553 3433322 345677788888888 89999999988666
Q ss_pred cccChHH--HHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGI--LLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~--~l~e~~r~LkpgG~li~~~~ 113 (402)
+. ++.. +++++.++|||||.+++..+
T Consensus 119 ~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 119 LT-DDEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp SC-HHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CC-hHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 54 5555 99999999999999999963
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.8e-13 Score=119.23 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=83.0
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+.. ..+...|...+++++++||+|+++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKV-NKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF 114 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH-HHHTCTTEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEecccccCCCCCCCeeEEEeeh
Confidence 35679999999999888877643 6899999998876665333 334443 5577778888888889999999998
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|+ .++..+++++.++|||||.+++...
T Consensus 115 ~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 144 (219)
T 3dh0_A 115 TFHEL-SEPLKFLEELKRVAKPFAYLAIIDW 144 (219)
T ss_dssp CGGGC-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhc-CCHHHHHHHHHHHhCCCeEEEEEEe
Confidence 86666 4889999999999999999999853
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-13 Score=124.81 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=93.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-----c----------------------------
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----L---------------------------- 301 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-----~---------------------------- 301 (402)
.+|||+|||+|.++..++..|+ .+|+++| ++.+++.+.++. .
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~----~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSF----QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTE----EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ceEEEeCCCccHHHHHHHHhhh----cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4699999999998888887764 2678877 677777655420 0
Q ss_pred --cc-ccc-cCCC--CCCCCC-CcccEEEEccccccc-cccCCHHHHHHHhhhhccCCcEEEEEeCh-------------
Q 015704 302 --IG-VMH-DWCE--PFDTYP-RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------- 360 (402)
Q Consensus 302 --~~-~~~-~~~~--~~~~~~-~sfD~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------- 360 (402)
+. .+. +..+ ++.+.+ .+||+|+|+.+|+|+ .+..++..+|.+|.|+|||||+|++++..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 00 111 2222 122223 699999999999996 44446679999999999999999999521
Q ss_pred ---hhHHHHHHHHHhcCceEEEeecCC---C----CCCceEEEEEEec
Q 015704 361 ---DVMDELQEIGKAMGWHVTLRETAE---G----PHASYRILTADKR 398 (402)
Q Consensus 361 ---~~~~~~~~~~~~~~w~~~~~~~~~---~----~~~~~~~l~~~k~ 398 (402)
...+.+...+.+-.+++....... . .....-+++|+|.
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 135677888877777765443211 1 1124567888885
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=118.67 Aligned_cols=119 Identities=16% Similarity=0.275 Sum_probs=89.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-------ccccccCCCCCCCCC-CcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-------IGVMHDWCEPFDTYP-RTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-------~~~~~~~~~~~~~~~-~sfD~v 322 (402)
.+|||+|||+|.++..|++.+. +|+++| ++.+++.+.++ ++ +..+....+.+ +++ ++||+|
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v 105 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY-----SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSFDFA 105 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCceeEE
Confidence 3599999999999999999986 566666 46677666663 22 23333333333 355 799999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC-----------------------------------------hh
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-----------------------------------------ID 361 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-----------------------------------------~~ 361 (402)
+|..+++|+.+......+|.++.|+|||||++++.+. ..
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 9999999998643344899999999999999999853 12
Q ss_pred hHHHHHHHHHhcCceEEEe
Q 015704 362 VMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 362 ~~~~~~~~~~~~~w~~~~~ 380 (402)
..+.++.++++-.+++...
T Consensus 186 ~~~~l~~ll~~aGf~~~~~ 204 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYF 204 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEE
Confidence 3677888888888887654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-13 Score=119.22 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=77.5
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.... .. .....+...|+..++ ++++||+|+|+.+++|+
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~-~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 127 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRT-KR-WSHISWAATDILQFS-TAELFDLIVVAEVLYYL 127 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHT-TT-CSSEEEEECCTTTCC-CSCCEEEEEEESCGGGS
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhc-cc-CCCeEEEEcchhhCC-CCCCccEEEEccHHHhC
Confidence 4579999999999999999876 7889999887664443221 11 123457777888887 67899999999886666
Q ss_pred ccCh---HHHHHHHHHhcCCCeEEEEEeC
Q 015704 88 TRDD---GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 88 ~~d~---~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. ++ ..+++++.++|||||.++++++
T Consensus 128 ~-~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 128 E-DMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp S-SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred C-CHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 5 54 5789999999999999999864
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-12 Score=117.71 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=91.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c---ccccccCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L---IGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~---~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|++.+. .|+++| ++.+++.+.++. . +..+..-.+.++ .+.+||+|+|..+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~ 141 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER-----FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVF 141 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE-----EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESS
T ss_pred CCEEEeCCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChh
Confidence 3799999999999999998875 577777 567777666552 2 233332222222 2269999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh-----------hhHHHHHHHHHhcCceEEEeecCCC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----------DVMDELQEIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-----------~~~~~~~~~~~~~~w~~~~~~~~~~ 385 (402)
|+|++ ..++..+|.++.|+|||||++++.+.. ...+.++.++.+-.|++........
T Consensus 142 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 209 (235)
T 3lcc_A 142 FCAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENPH 209 (235)
T ss_dssp TTTSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECTT
T ss_pred hhcCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecCC
Confidence 99997 346789999999999999999987531 2367889999999999877654433
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-13 Score=127.12 Aligned_cols=103 Identities=11% Similarity=0.068 Sum_probs=72.5
Q ss_pred CCCCeEEEECCccchhHHH----Hcc--CCc----eEEeCCccchHHHHHHHHHHcCCCcE---EEeccccCCC------
Q 015704 9 RLLRVVMDAGCGVASFGAY----LLP--RNV----ITMSIAPKDVHENQIQFALERGAPAM---VAAFATRRLP------ 69 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~----L~~--~~v----~~vdi~~~~~~~a~~~~a~~~~~~~~---~~~~d~~~lp------ 69 (402)
.++.+|||||||+|.++.. +.. ..+ +++|+++.|+..+..+.+...+.... +...+.+.++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 3566999999999976543 222 122 89999998887665433322233332 2333444433
Q ss_pred CCCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 70 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 70 ~~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++++||+|+|+.+++| .+|+..++++++|+|||||.+++..
T Consensus 131 ~~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TCCCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCceeEEEEeeeeee-cCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 56789999999887555 4589999999999999999999985
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=113.56 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=98.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEc-cccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAA-GLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~-~~~~~~ 331 (402)
.+|||+|||.|.++..|++.+. +++.+| ++.+++.+.++.- +..++.....+ +++ ++||+|+|. .+++|+
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH-----DVLGTDLDPILIDYAKQDFPEARWVVGDLSVD-QISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTTS-CCCCCCEEEEEECCCCGGGS
T ss_pred CeEEEECCCCCHHHHHHHHCCC-----cEEEEcCCHHHHHHHHHhCCCCcEEEcccccC-CCCCCceeEEEECCcHHhhc
Confidence 4699999999999999999976 566666 4566777666532 33333322332 355 799999998 788887
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeCh---hhHHHHHHHHHhcCceEEEeecCCC-----CCCceEEEEEEec
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDSI---DVMDELQEIGKAMGWHVTLRETAEG-----PHASYRILTADKR 398 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~~---~~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~l~~~k~ 398 (402)
.+ .+...+|.++.|+|||||.+++.... .....+...+.+..+++........ +..+..+++++|+
T Consensus 122 ~~-~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 122 AE-DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred Ch-HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 53 34679999999999999999998644 3477888888888998877644322 2345667777774
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-11 Score=121.91 Aligned_cols=127 Identities=23% Similarity=0.284 Sum_probs=83.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|++++. .|+.+| ++.+++.+.++ |+ +..++......+ ++ ++||+|+|...|
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~-----~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~-~~~~~fD~Ii~npp~ 308 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGA-----EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL-TEEARFDIIVTNPPF 308 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTC-----EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS-CTTCCEEEEEECCCC
T ss_pred CEEEEEeeeCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc-ccCCCeEEEEECCch
Confidence 4699999999999999999986 555555 34556555443 33 334443333322 34 799999999998
Q ss_pred ccccc--cCCHHHHHHHhhhhccCCcEEEEEeChh--hHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 329 SVESK--RCNMSTIMLEMDRMLRPGGHVYIRDSID--VMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 329 ~~~~~--~~~~~~~l~e~~RvLrpgG~~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
++... ..+...++.++.|+|||||++++..+.. ....+++.... +..... .+.+|+-+.|
T Consensus 309 ~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~----v~~l~~-----~gF~Vl~a~~ 372 (381)
T 3dmg_A 309 HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGA----FQTLKV-----AEYKVLFAEK 372 (381)
T ss_dssp CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSC----CEEEEE-----SSSEEEEEEC
T ss_pred hhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhcc----EEEEeC-----CCEEEEEEEE
Confidence 87332 2245789999999999999999986542 23344444432 222211 2566776665
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.4e-13 Score=124.68 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=73.0
Q ss_pred ceEEeccccchHHHHHHhh-cCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIE-QKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~-~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++ .|+ .|+++| ++.+++.+.++ |+ +..++... ..+|++||+|+|..
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~-----~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~fD~v~~~~ 137 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEKYDV-----NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQFDEPVDRIVSIG 137 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGCCCCCSEEEEES
T ss_pred CEEEEECCcccHHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh---hhCCCCeeEEEEeC
Confidence 3699999999999999994 454 666666 56777766665 33 33333222 33458999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|+|+.+ .++..+|.|+.|+|||||++++.+.
T Consensus 138 ~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 138 AFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp CGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred chhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999963 4678999999999999999999863
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=116.85 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=76.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. ++. ...+...+...++ ++++||+|+|+.+++|+
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-----~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 115 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEAS-----RRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHV 115 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-----HHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHH-----Hhc-CCceEEeeeccCC-CCCcEEEEEecCchhhc
Confidence 5679999999999999988876 7889999886664443 221 2234556777777 77899999999887776
Q ss_pred cc-ChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 88 TR-DDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 88 ~~-d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.. +...+++++.++|||||.++++.++
T Consensus 116 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 116 PRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 52 4678999999999999999999643
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.9e-13 Score=121.87 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=80.2
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcC---CCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG---APAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~---~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++.++ +.++++. ....+...|...+|+++++||+|+++.+
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 129 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV-----NMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDA 129 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-----HHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHH-----HHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHH
Confidence 5679999999999999888764 788999887655 4444442 2345677788888998999999999988
Q ss_pred ccccc-cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~-~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+. .++..+++++.++|||||.+++.++
T Consensus 130 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 130 ILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 77763 4678999999999999999999864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.6e-13 Score=124.23 Aligned_cols=95 Identities=11% Similarity=0.160 Sum_probs=74.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~ 333 (402)
.+|||+|||+|.++..|++.+. .|+++| ++.+++.+.++.- +..+....+.++ ++++||+|+|..+++|+.+
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d 132 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQSGA-----EVLGTDNAATMIEKARQNYPHLHFDVADARNFR-VDKPLDAVFSNAMLHWVKE 132 (279)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-CSSCEEEEEEESCGGGCSC
T ss_pred CEEEEecCCCCHHHHHHHhCCC-----eEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-cCCCcCEEEEcchhhhCcC
Confidence 4699999999999999999776 566666 5678887776631 233333334433 4689999999999999874
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+..+|.|+.|+|||||++++...
T Consensus 133 ---~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 133 ---PEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHhcCCCcEEEEEec
Confidence 68999999999999999999854
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=113.75 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=80.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.. .....+. ...+...|...+++ +++||+|+++.+++|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 109 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVER-IKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMF 109 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence 5679999999999999888866 78999999887766653 3333444 44567778888887 789999999988666
Q ss_pred ccc-ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 87 WTR-DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~~-d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.. +...+++++.++|||||.+++.+
T Consensus 110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 643 46889999999999999988764
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.36 E-value=9.2e-13 Score=120.90 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=78.9
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.............+...|+..+++++++||+|+++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 4679999999999999988765 6899999987765544222211111234666788888888889999999988666
Q ss_pred cccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.+. ...+++++.++|||||.++++++
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 6522 35899999999999999999864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-12 Score=116.08 Aligned_cols=123 Identities=19% Similarity=0.200 Sum_probs=90.8
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
-.+|||+|||+|.++..|++++. ..|+.+| ++.+++.+.++.- +..+..-.+.++ ++ ++||+|+|..
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF----REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQW 154 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC----SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEES
T ss_pred CCEEEEECCCCCHHHHHHHHhcC----CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-CCCCCEEEEEEcc
Confidence 45799999999999999998852 2566666 5667777666532 223332233333 45 6999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh---------------hhHHHHHHHHHhcCceEEEeecC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------DVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~---------------~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
+++|+.+. ....+|.++.|+|||||++++.+.. ...+.+++++.+..+++......
T Consensus 155 ~l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 155 VIGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hhhhCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 99999852 2458999999999999999998742 13678888899889988776543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=121.75 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=78.3
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC-ccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR-CRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~-~~~ 85 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.++++.....+...|+..+++ +++||+|+|+. +++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~ 122 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADML-----AIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIG 122 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHH-----HHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHH-----HHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhh
Confidence 45689999999999999999876 688999887655 4444443355677788888887 68999999987 656
Q ss_pred ccc--cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWT--RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~--~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+. .+...+++++.++|||||.+++..
T Consensus 123 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 123 HLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 654 245789999999999999999984
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=128.03 Aligned_cols=117 Identities=20% Similarity=0.114 Sum_probs=88.2
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+...+....+...|....+.++++||+|+|+..+++.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~-~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQ-KGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHH-HHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 5679999999999999988876 7899999988776665 444455556677778887777767899999998775441
Q ss_pred ----ccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHH
Q 015704 88 ----TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWK 127 (402)
Q Consensus 88 ----~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~ 127 (402)
..+...+++++.++|||||.+++++.+.......+.+.+.
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~ 355 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG 355 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence 2345789999999999999999997544433333444443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=117.88 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=81.1
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.. .....+....+...|+..+++++++||+|+++.++++
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKARE-YAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 34779999999999999888776 78999999877765553 3333344556777788888888889999999876322
Q ss_pred c-ccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 W-TRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~-~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+ ..++..+++++.++|||||.+++..+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 2 23568899999999999999999853
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-13 Score=127.08 Aligned_cols=99 Identities=11% Similarity=0.180 Sum_probs=69.2
Q ss_pred ceEEeccccchHHHH----HHhhcCCCceEEEeccCC-CCCChhhHHhc-----Cc--ccc--cccCCCCCC-----CCC
Q 015704 256 RNVLDMRAGFGGFAA----ALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-----GL--IGV--MHDWCEPFD-----TYP 316 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~----~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-----g~--~~~--~~~~~~~~~-----~~~ 316 (402)
.+|||+|||+|.++. .++.++..+ .+.++.+| +++|++.+.++ ++ +.. .....++++ +|+
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 469999999998654 344443222 22447777 67888877765 32 111 111122222 255
Q ss_pred -CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 317 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 317 -~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++||+|+|+++|+|+++ +..+|.||.|+|||||++++..
T Consensus 133 ~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp CCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 89999999999999875 6899999999999999999974
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-12 Score=114.26 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=84.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~ 333 (402)
.+|||+|||+|.++..|+.+ +.+| ++.+++.+.++++ ..+....+.+ +++ ++||+|+|.++++|+.
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~---------~~vD~s~~~~~~a~~~~~-~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~- 116 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK---------IGVEPSERMAEIARKRGV-FVLKGTAENL-PLKDESFDFALMVTTICFVD- 116 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC---------EEEESCHHHHHHHHHTTC-EEEECBTTBC-CSCTTCEEEEEEESCGGGSS-
T ss_pred CcEEEeCCCCCHHHHHHHHH---------hccCCCHHHHHHHHhcCC-EEEEcccccC-CCCCCCeeEEEEcchHhhcc-
Confidence 35999999999999999765 3344 4567778877754 2333223343 355 7999999999999986
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEeCh------------------------hhHHHHHHHHHhcCceEEEee
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRDSI------------------------DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~~~------------------------~~~~~~~~~~~~~~w~~~~~~ 381 (402)
++..+|.++.|+|||||++++.+.. ...+.++.++.+..+++....
T Consensus 117 --~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 117 --DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999998532 135678888888888876543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.5e-13 Score=121.86 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=73.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|++.+. .|+.+| ++.+++.+.++ |+ +..+....+.++ ++ ++||+|+|..+
T Consensus 23 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 23 HRVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYA 96 (239)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESC
T ss_pred CEEEEEccCcCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCCCcEEEEEECCc
Confidence 4699999999999999999875 566666 45666665543 33 334444345543 66 89999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++|+.+ +..+|.|+.|+|||||++++.+
T Consensus 97 l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 97 AHHFSD---VRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp GGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhccC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 999874 6899999999999999999985
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=120.12 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=78.5
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++. .++++.....+...|...++ ++++||+|+|+.++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~-----~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l 105 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLE-----KAADRLPNTNFGKADLATWK-PAQKADLLYANAVF 105 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHH-----HHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHH-----HHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCch
Confidence 35679999999999988877653 7999999876654 34343334567777888888 77899999998774
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+.+++..+++++.++|||||.++++++
T Consensus 106 -~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 106 -QWVPDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp -GGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred -hhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 4456899999999999999999999974
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-13 Score=124.10 Aligned_cols=119 Identities=11% Similarity=-0.031 Sum_probs=86.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----------------------c-ccccccCCCC
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----------------------L-IGVMHDWCEP 311 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----------------------~-~~~~~~~~~~ 311 (402)
.+|||+|||.|..+..|+++|+ +|+++| ++.+++.+.++. . +..+..-...
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~-----~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH-----TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC-----EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CeEEEeCCCCcHHHHHHHHCCC-----eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4699999999999999999997 788888 678888776542 1 2223322233
Q ss_pred CCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe----------C--hhhHHHHHHHHHhcCceEE
Q 015704 312 FDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD----------S--IDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 312 ~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~----------~--~~~~~~~~~~~~~~~w~~~ 378 (402)
+++-+ ++||+|++..+|.|++. .+...++.|+.|+|||||++++.. + ....+.++.++.. .|++.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~-~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~ 222 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINP-GDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQ 222 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCH-HHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEE
Confidence 33222 79999999999999973 456789999999999999996431 0 1235677887776 48876
Q ss_pred Eee
Q 015704 379 LRE 381 (402)
Q Consensus 379 ~~~ 381 (402)
...
T Consensus 223 ~~~ 225 (252)
T 2gb4_A 223 CLE 225 (252)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=119.05 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=82.1
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC-ccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR-CRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~-~~~ 85 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+... ....+....+...|+..++++ ++||+|+++. +++
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENK-FRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHH-HHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHH-HhhcCCCeEEEecccccCCcc-CCceEEEEcCcccc
Confidence 36679999999999999988876 789999998887666533 333344556777788888877 8999999987 766
Q ss_pred ccc--cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWT--RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~--~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. .++..+++++.++|||||.+++.++
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 663 3568999999999999999999853
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=116.48 Aligned_cols=101 Identities=12% Similarity=0.031 Sum_probs=78.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC------CcEEEeccccCCCCCCCCeeEEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA------PAMVAAFATRRLPYPSQAFDLIH 79 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~------~~~~~~~d~~~lp~~~~sfDlI~ 79 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.. .....+. ...+...|+...+.+.++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE-RLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHH-HHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHH-HHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 5679999999999999988864 68999999877765542 2222232 34566777777777778999999
Q ss_pred ecCcccccccCh--HHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRDD--GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d~--~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.+++|+. ++ ..+++++.++|||||.++++.
T Consensus 108 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 108 VIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp EESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 998877764 44 789999999999999777763
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.8e-13 Score=122.37 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=79.0
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.++++. ...+...|.+.+|+++++||+|+|+.+++|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 106 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMR-----QQAVVHP-QVEWFTGYAENLALPDKSVDGVISILAIHH 106 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHH-----HSSCCCT-TEEEECCCTTSCCSCTTCBSEEEEESCGGG
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHH-----HHHHhcc-CCEEEECchhhCCCCCCCEeEEEEcchHhh
Confidence 46789999999999999999875 788999887544 3333332 456777888899999999999999988666
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+ .++..+++++.++|| ||.+++.++
T Consensus 107 ~-~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 107 F-SHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp C-SSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred c-cCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 6 589999999999999 998877754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=124.23 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=81.1
Q ss_pred CCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcC----CCcEEEeccccCCCCCCCCeeEEEec
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG----APAMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~----~~~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
...+.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+ ....+...|+..+++ +++||+|+|+
T Consensus 80 ~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 80 GPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFR-KRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVIS 157 (299)
T ss_dssp CCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHH-HHHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEEC
T ss_pred CCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHH-HHHhhcccccccceEEEeCchhcCCc-CCCcCEEEEC
Confidence 344569999999999999999876 8999999988776555 3333333 345677888888887 6899999976
Q ss_pred CcccccccC--hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCRINWTRD--DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~~~~~d--~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...+++.++ ...+++++.++|||||.|++.++
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 158 SGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 555666542 47899999999999999999964
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-12 Score=115.08 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=72.5
Q ss_pred ceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|++. +. .|+++| ++.+++.+.++- -+..+....+.+ +++++||+|+|..++
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~l 119 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEA-----TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKY-DFEEKYDMVVSALSI 119 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTC-----EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTC-CCCSCEEEEEEESCG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC-----eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhcc-CCCCCceEEEEeCcc
Confidence 56999999999999999998 44 566666 567777777662 133333333332 234899999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|+.+. ....+|.|+.|+|||||++++.+
T Consensus 120 ~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 120 HHLEDE-DKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHhcCCCcEEEEEE
Confidence 999742 22369999999999999999987
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=123.16 Aligned_cols=95 Identities=23% Similarity=0.309 Sum_probs=74.3
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|++. |+ .|+++| ++.+++.+.++ |+ +..++...+.+ +|+ ++||+|+|.
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~ 157 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRKFGV-----SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQ 157 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-CCCCCCEeEEEec
Confidence 46999999999999999987 65 566666 46677666554 33 34444333443 366 799999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+++|+.+ +..+|.|+.|+|||||++++.+.
T Consensus 158 ~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 158 DAFLHSPD---KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp SCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhhcCC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999875 68999999999999999999963
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=112.39 Aligned_cols=95 Identities=20% Similarity=0.273 Sum_probs=75.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..+++. .++++|+++.++ +.++++.....+...| +++++++||+|+++.+++|+
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~-----~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIAL-----KEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDM 88 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHH-----HHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHH-----HHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhcc
Confidence 4569999999999999998876 788888887555 4444443344555555 77888999999999886666
Q ss_pred ccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 88 TRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 88 ~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++..+++++.++|||||.+++..+
T Consensus 89 -~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 89 -DDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp -SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 4889999999999999999999854
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=122.52 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=84.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.+|||+|||+|.++..|+++|+ +|+++| ++.+++.+.++ |+ +..+..-.+.++ ++++||+|+|..+|+
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY-----DVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN-IQENYDFIVSTVVFM 195 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC-CCSCEEEEEECSSGG
T ss_pred CcEEEECCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc-ccCCccEEEEccchh
Confidence 4599999999999999999987 566666 45566555443 43 333332223323 268999999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeC--------------hhhHHHHHHHHHhcCceEEEeec
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDS--------------IDVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~--------------~~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
|+.+ .+...+|.++.|+|||||++++... ......++..+.. |++....+
T Consensus 196 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 259 (286)
T 3m70_A 196 FLNR-ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNE 259 (286)
T ss_dssp GSCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEc
Confidence 9974 3567999999999999999877532 1124567777766 88776543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=115.97 Aligned_cols=101 Identities=9% Similarity=0.048 Sum_probs=78.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC------CcEEEeccccCCCCCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA------PAMVAAFATRRLPYPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~------~~~~~~~d~~~lp~~~~sfDlI 78 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+. ...+...|+..+++++++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRL-KIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHH-TGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 35679999999999999988864 6899999987776555332 22222 3456777887778778899999
Q ss_pred EecCcccccccCh--HHHHHHHHHhcCCCeEEEEE
Q 015704 79 HCSRCRINWTRDD--GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 79 ~s~~~~~~~~~d~--~~~l~e~~r~LkpgG~li~~ 111 (402)
+|+.+++|+. ++ ..+++++.++|||||.++.+
T Consensus 107 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 107 TVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp EEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEc
Confidence 9998877764 44 68999999999999976665
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-13 Score=128.20 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=75.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c------ccccccCCCCCCC--CC-CcccE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L------IGVMHDWCEPFDT--YP-RTYDL 321 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~------~~~~~~~~~~~~~--~~-~sfD~ 321 (402)
.+|||+|||+|.++..|++.|+ +|+++| ++.+++.+.++. . +.........++. ++ ++||+
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEEGF-----SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 133 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEE
Confidence 4699999999999999999986 677777 567777776542 1 1112211112110 45 89999
Q ss_pred EEEc-cccccccc----cCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 322 LHAA-GLFSVESK----RCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 322 v~~~-~~~~~~~~----~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
|+|. ++|+|+.+ ..++..+|.++.|+|||||++++..++
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9998 89999986 344789999999999999999999876
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-13 Score=122.40 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=74.2
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC--CCCCCCCeeEEEec-
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR--LPYPSQAFDLIHCS- 81 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~--lp~~~~sfDlI~s~- 81 (402)
..++.+|||||||+|..+..+++. .++++|+++.++..+. +.+...+....+...+.+. .++++++||.|++.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~ 136 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEeehHHhhcccccccCCceEEEee
Confidence 356789999999999999988876 6889999987775554 3333444444555555433 35778899999852
Q ss_pred ----CcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 82 ----RCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 82 ----~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
....| ..+...++++++|+|||||.|++.
T Consensus 137 ~~~~~~~~~-~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 137 YPLSEETWH-THQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCCBGGGTT-THHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eecccchhh-hcchhhhhhhhhheeCCCCEEEEE
Confidence 22222 236788999999999999999886
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=118.43 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=91.7
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
-.+|||+|||+|.++..|++.+.. +|+++| ++.+++.+.++.- +..+..-.+.++ ++ ++||+|+|..+++
T Consensus 45 ~~~vLD~GcG~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 119 (253)
T 3g5l_A 45 QKTVLDLGCGFGWHCIYAAEHGAK----KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIA-IEPDAYNVVLSSLALH 119 (253)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCC-CCTTCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCC-CCCCCeEEEEEchhhh
Confidence 356999999999999999999752 566666 5677877777632 333333334433 66 8999999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeChh----------------------------------------------hH
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------------------------------------------VM 363 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~----------------------------------------------~~ 363 (402)
|+. ++..+|.++.|+|||||+++++.... ..
T Consensus 120 ~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 196 (253)
T 3g5l_A 120 YIA---SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTV 196 (253)
T ss_dssp GCS---CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCH
T ss_pred hhh---hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCH
Confidence 985 46899999999999999999983210 45
Q ss_pred HHHHHHHHhcCceEEEeec
Q 015704 364 DELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 364 ~~~~~~~~~~~w~~~~~~~ 382 (402)
+.+..++++-.+++....+
T Consensus 197 ~~~~~~l~~aGF~~~~~~e 215 (253)
T 3g5l_A 197 TTYIQTLLKNGFQINSVIE 215 (253)
T ss_dssp HHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHcCCeeeeeec
Confidence 7788888888888876654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-13 Score=121.45 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=79.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.... ... ....+...|...+++++++||+|+|+.+++|
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 170 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKREL-AGM-PVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHT-TTS-SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHh-ccC-CceEEEEccHHHCCCCCCCeEEEEEcchhhh
Confidence 5679999999999999887754 5889999887664443211 111 2244667788888888899999999988777
Q ss_pred ccc-ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTR-DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~-d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.. ++..+++++.++|||||.++++++
T Consensus 171 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 171 LTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 652 468999999999999999999963
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=124.32 Aligned_cols=103 Identities=8% Similarity=0.017 Sum_probs=72.9
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC-------cEEEeccc------cCC--CCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-------AMVAAFAT------RRL--PYP 71 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~-------~~~~~~d~------~~l--p~~ 71 (402)
++.+|||+|||+|..+..++.. .|+|+|+++.++..++... .+.+.. ..+.+.++ +.+ +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~-~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERY-NKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHH-Hhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4679999999999755544433 6999999999998776433 333321 22334444 222 356
Q ss_pred CCCeeEEEecCcccccc--cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 72 SQAFDLIHCSRCRINWT--RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 72 ~~sfDlI~s~~~~~~~~--~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++||+|+|..++++.. .+...++++++++|||||+|+++++
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 78999999987744432 2457899999999999999999974
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=116.29 Aligned_cols=96 Identities=14% Similarity=0.106 Sum_probs=73.9
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCC-CCCCC-CcccEEEEccccccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEP-FDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~-~~~~~-~sfD~v~~~~~~~~~ 331 (402)
-.+|||+|||+|.++..|++.|. +++.+| ++.+++.+.++.. ..++...+. ..+++ ++||+|+|.++++|+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~-----~~~~~D~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~ 106 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKENGT-----RVSGIEAFPEAAEQAKEKLD-HVVLGDIETMDMPYEEEQFDCVIFGDVLEHL 106 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTTTC-----EEEEEESSHHHHHHHHTTSS-EEEESCTTTCCCCSCTTCEEEEEEESCGGGS
T ss_pred CCcEEEeCCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHhCC-cEEEcchhhcCCCCCCCccCEEEECChhhhc
Confidence 35699999999999999999865 566666 4567777766543 222222222 24566 799999999999998
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+ +..+|.++.|+|||||+++++.+
T Consensus 107 ~~---~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 107 FD---PWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp SC---HHHHHHHTGGGEEEEEEEEEEEE
T ss_pred CC---HHHHHHHHHHHcCCCCEEEEEeC
Confidence 74 58999999999999999999864
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-12 Score=113.67 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=78.2
Q ss_pred eEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccccc-c
Q 015704 13 VVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT-R 89 (402)
Q Consensus 13 ~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~-~ 89 (402)
+|||+|||+|.++..+++. .++++|+++.++..+... ....+....+...|+..+++++++||+|+++. .|+. .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQL-AQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHH-HHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHH
Confidence 9999999999999988876 789999998777665533 33334455677778888888889999999864 3443 3
Q ss_pred ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 90 DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 90 d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+...+++++.++|||||.+++.++
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~ 132 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGF 132 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEe
Confidence 568899999999999999999964
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.2e-13 Score=122.90 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=72.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~ 333 (402)
.+|||+|||+|.++..|++.+. .|+++| ++.+++.+..+.-+..+....+.++ ++ ++||+|+|..+++|+.
T Consensus 36 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~- 108 (261)
T 3ege_A 36 SVIADIGAGTGGYSVALANQGL-----FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA-LPDKSVDGVISILAIHHFS- 108 (261)
T ss_dssp CEEEEETCTTSHHHHHHHTTTC-----EEEEECSCHHHHHSSCCCTTEEEECCCTTSCC-SCTTCBSEEEEESCGGGCS-
T ss_pred CEEEEEcCcccHHHHHHHhCCC-----EEEEEeCCHHHHHHHHhccCCEEEECchhhCC-CCCCCEeEEEEcchHhhcc-
Confidence 5699999999999999999876 566666 4556665555543444444445543 66 8999999999999986
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++..+|.|+.|+|| ||++++.+
T Consensus 109 --~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 109 --HLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp --SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred --CHHHHHHHHHHHhC-CcEEEEEE
Confidence 46899999999999 99888875
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-12 Score=113.52 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=77.2
Q ss_pred CCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccccccC
Q 015704 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 90 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d 90 (402)
+.+|||+|||+|.++..++.. +++|+++.++ +.++++ ...+...|...+++++++||+|+++.+++|+ ++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~-----~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSERMA-----EIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFV-DD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEESCHHHH-----HHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGS-SC
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCCCHHHH-----HHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhc-cC
Confidence 679999999999999988877 8899887655 444444 3456667788888888899999998876655 58
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 91 DGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 91 ~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
+..+++++.++|+|||.++++.+.
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeC
Confidence 899999999999999999999643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=131.05 Aligned_cols=115 Identities=16% Similarity=0.191 Sum_probs=72.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCCCCCCCC-CCcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWCEPFDTY-PRTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~~~~~~~-~~sfD~v~~~~ 326 (402)
.|||+|||+|+|+.+++..|+. .|+.+| ++.+++.+.+. |+ +..++.-+..+... .++||+|++.-
T Consensus 542 ~VLDlg~GtG~~sl~aa~~ga~----~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 542 DFLNLFSYTGSATVHAGLGGAR----STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp EEEEESCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cEEEeeechhHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 5999999999999999998762 466666 45666655443 33 22222211111112 37999999853
Q ss_pred -----------ccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEE
Q 015704 327 -----------LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 327 -----------~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~ 378 (402)
++.+. .+...++.++.|+|||||+++++.+........+.+.+..++..
T Consensus 618 P~f~~~~~~~~~~~~~---~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~ 677 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQ---RDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQ 677 (703)
T ss_dssp CSBC-------CCBHH---HHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEE
T ss_pred ccccCCccchhHHHHH---HHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCcee
Confidence 22222 23568899999999999999999755222222344455555543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=123.83 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=74.1
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+++ |. +|+++| ++.+++.+.++ |+ +..++.-.+ .++++||+|+|..
T Consensus 74 ~~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~fD~v~~~~ 145 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAEYDV-----NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVDRIVSLG 145 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC-----EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCSEEEEES
T ss_pred CEEEEeeccCcHHHHHHHHhCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH---HcCCCccEEEEcc
Confidence 36999999999999999988 65 566666 56677666655 43 333332222 2378999999999
Q ss_pred cccccccc------CCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKR------CNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~------~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|+|++++ .+...+|.++.|+|||||++++.+.
T Consensus 146 ~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 146 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99999654 4457999999999999999999863
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=124.34 Aligned_cols=138 Identities=17% Similarity=0.111 Sum_probs=97.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|+.... ...+|+++| ++.+++.+.++ |+ +..+....+.+ +++++||+|+|..+
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~ 196 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSAC--PGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-DTREGYDLLTSNGL 196 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTC--TTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-CCCSCEEEEECCSS
T ss_pred CEEEEecCCCCHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-CccCCeEEEEECCh
Confidence 4599999999999999952211 122666666 56677666554 32 33344333333 35589999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh---------------------------------------hhHHHHHH
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------------------------------DVMDELQE 368 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~---------------------------------------~~~~~~~~ 368 (402)
++|+++......+|.++.|+|||||++++++.. ...+.++.
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA 276 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence 999986544445899999999999999998711 23678888
Q ss_pred HHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 369 IGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 369 ~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
++++-.++....... .......++++|+
T Consensus 277 ~l~~aGF~~v~~~~~--~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 277 QLEEAGFTDLRFEDD--RARLFPTVIARKP 304 (305)
T ss_dssp HHHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred HHHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence 999999998776643 2234567788885
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=121.07 Aligned_cols=97 Identities=26% Similarity=0.367 Sum_probs=75.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~ 333 (402)
.+|||+|||+|.++..|++++. +|+.+| ++.+++.+.++..-..+....+.++ ++ ++||+|+|..++.|+.+
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQERGF-----EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHCS
T ss_pred CeEEEeCCCcCHHHHHHHHcCC-----eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCC-CCCCCEEEEEEcchhhhccc
Confidence 4699999999999999999986 666776 5678888877754112222233333 66 79999999998888743
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
++..+|.|+.|+|||||.+++...+
T Consensus 130 --~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 130 --NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 3789999999999999999998765
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-12 Score=119.29 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=81.4
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+....+...|+..+++ +++||+|+|+.+++|+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLN-ETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 5679999999999999988876 7899999998876665 4444455556677788888776 7899999999886666
Q ss_pred ccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 88 TRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 88 ~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+ ...+++++.++|+|||.+++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 432 4689999999999999988764
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-11 Score=108.16 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=84.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEcccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKR 334 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~ 334 (402)
.+|||+|||+|.++..|+ ..|..+++.+. .+ ..+....+.+ +++ ++||+|+|..+++|
T Consensus 69 ~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~------------~~-~~~~~d~~~~-~~~~~~fD~v~~~~~l~~---- 127 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR---NPVHCFDLASL------------DP-RVTVCDMAQV-PLEDESVDVAVFCLSLMG---- 127 (215)
T ss_dssp SCEEEETCTTCHHHHHCC---SCEEEEESSCS------------ST-TEEESCTTSC-SCCTTCEEEEEEESCCCS----
T ss_pred CeEEEECCcCCHHHHHhh---ccEEEEeCCCC------------Cc-eEEEeccccC-CCCCCCEeEEEEehhccc----
Confidence 469999999999999984 22333333322 11 1222222332 356 79999999999953
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEeChh---hHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 335 CNMSTIMLEMDRMLRPGGHVYIRDSID---VMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 335 ~~~~~~l~e~~RvLrpgG~~~~~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
.++..+|.|+.|+|||||++++.+... ..+.+...+++..+++...+... ....+++++|.
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~---~~~~~~~~~k~ 191 (215)
T 2zfu_A 128 TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTN---SHFFLFDFQKT 191 (215)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCS---TTCEEEEEEEC
T ss_pred cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCC---CeEEEEEEEec
Confidence 357899999999999999999998653 46788889999999987765432 34577788874
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=9.4e-12 Score=112.12 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=79.1
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEE
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIH 79 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp--~~~~sfDlI~ 79 (402)
++.++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+.. ..+...|+..++ +++++||+|+
T Consensus 38 f~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~ 116 (214)
T 1yzh_A 38 FGNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL-DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLY 116 (214)
T ss_dssp HTSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred cCCCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHH-HHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEE
Confidence 4455789999999999998887753 7999999998886665 334444543 456677877776 7788999999
Q ss_pred ecCccccccc--------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++.. .+|.. ....++.++.++|+|||.+++.+
T Consensus 117 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 117 LNFS-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp EESC-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred EECC-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 8754 33322 12579999999999999999986
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=120.84 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=74.1
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-----cccccccCCCCCCCCC-CcccEEEEccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-----LIGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-----~~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
-.+|||+|||+|.++..|++++. +|+++| ++.+++.+.++- -+..+....+.++ ++ ++||+|+|..+
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGY-----RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP-LPDESVHGVIVVHL 113 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTC-----EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-SCTTCEEEEEEESC
T ss_pred CCEEEEeCCcCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-CCCCCeeEEEECCc
Confidence 34699999999999999999876 566666 567777777652 1333443334433 66 79999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++|+++ +..+|.|+.|+|||||++++.
T Consensus 114 l~~~~~---~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 114 WHLVPD---WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGGCTT---HHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcCC---HHHHHHHHHHHCCCCcEEEEE
Confidence 999874 689999999999999999987
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=120.11 Aligned_cols=94 Identities=27% Similarity=0.354 Sum_probs=72.5
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|+++ +. +|+.+| ++.+++.+.++ |+ +..+....+.+ +++ ++||+|+|.
T Consensus 63 ~~vLDiGcG~G~~~~~l~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~ 136 (273)
T 3bus_A 63 DRVLDVGCGIGKPAVRLATARDV-----RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-PFEDASFDAVWAL 136 (273)
T ss_dssp CEEEEESCTTSHHHHHHHHHSCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCTTCEEEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHhcCC-----EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-CCCCCCccEEEEe
Confidence 46999999999999999885 44 566666 45666665554 43 33343333343 466 799999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+|+|+.+ +..+|.|+.|+|||||++++.+
T Consensus 137 ~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 137 ESLHHMPD---RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp SCTTTSSC---HHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhCCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 99999875 5899999999999999999986
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-12 Score=121.33 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=79.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcC----CCcEEEeccccCCC---CCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG----APAMVAAFATRRLP---YPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~----~~~~~~~~d~~~lp---~~~~sfDlI~s 80 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+......... ....+...+...++ +++++||+|+|
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 136 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 136 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence 5679999999999999998876 789999998887666533221111 12345666777777 78899999999
Q ss_pred c-CcccccccC-------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 S-RCRINWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~-~~~~~~~~d-------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+ .+++|+. + ...++++++++|||||+++++.+
T Consensus 137 ~g~~l~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 137 LGNSFAHLP-DSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CTTCGGGSC-CSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cChHHhhcC-ccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7 6766665 5 78999999999999999999963
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=120.32 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=74.1
Q ss_pred ceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
.+|||+|||+|.++..|+++ +. .|+.+| ++.+++.+.++.- +..+....+.++ .+++||+|+|..+++|+
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~ 108 (259)
T 2p35_A 35 LNGYDLGCGPGNSTELLTDRYGVN-----VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWV 108 (259)
T ss_dssp SSEEEETCTTTHHHHHHHHHHCTT-----SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGS
T ss_pred CEEEEecCcCCHHHHHHHHhCCCC-----EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhC
Confidence 46999999999999999988 55 556666 5678888777632 333443344444 23799999999999998
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
. ++..+|.++.|+|||||++++...
T Consensus 109 ~---~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 109 P---DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp T---THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred C---CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 6 468999999999999999999864
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-12 Score=113.65 Aligned_cols=95 Identities=14% Similarity=0.253 Sum_probs=71.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEcc-cc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAG-LF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~~-~~ 328 (402)
.+|||+|||+|.++..|++. . +|+.+| ++.+++.+.++ +. +..++.....+ +++++||+|+|.. ++
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~-~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH-Y-----EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMREL-ELPEPVDAITILCDSL 107 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT-S-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGC-CCSSCEEEEEECTTGG
T ss_pred CeEEEecCCCCHHHHHHhhC-C-----eEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhc-CCCCCcCEEEEeCCch
Confidence 56999999999999999987 4 566666 46677666654 21 23333222232 2458999999986 99
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+|+.+..++..+|.++.|+|||||+++++
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99966666789999999999999999984
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=123.34 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=73.9
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++. |+ .|+.+| ++.+++.+.++ |+ +..+.... ..+|++||+|+|..
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~fD~v~~~~ 163 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERFDV-----NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDFAEPVDRIVSIE 163 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGCCCCCSEEEEES
T ss_pred CEEEEEcccchHHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---HHCCCCcCEEEEeC
Confidence 36999999999999999988 65 666666 56677766665 43 33333222 33468999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|+|+.+ .++..+|.|+.|+|||||++++.+.
T Consensus 164 ~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 164 AFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp CGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999963 3678999999999999999999864
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=115.36 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=77.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+++. .++++|+++.++ +.+++.+. ...+...|+..+ +++++||+|+|+.+++|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~ 119 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMI-----AEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAH 119 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHH-----HHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHH-----HHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhc
Confidence 4569999999999999888765 788999887655 44444553 345677787777 77889999999988676
Q ss_pred cccC-hHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 87 WTRD-DGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 87 ~~~d-~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
+.+. ...+++++.++|||||.+++.++.
T Consensus 120 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 120 VPDDRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6532 378999999999999999999743
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=117.44 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=78.3
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcC--CCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG--APAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~--~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.... ...+ ....+...|+..++ ++++||+|+++.++
T Consensus 65 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 65 LPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETY-GSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFF 142 (235)
T ss_dssp SCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHH-TTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESST
T ss_pred CCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHh-hccCCCcceEEEECchhcCC-CCCCeeEEEEChhh
Confidence 34569999999999999999876 7899999987765554222 2111 12456777877776 45699999998876
Q ss_pred ccccc-ChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 85 INWTR-DDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 85 ~~~~~-d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
+++.. +...+++++.++|||||.+++...+
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 66643 4688999999999999999998653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-13 Score=121.26 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=75.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--CCCCCCeeEEEe-cC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--PYPSQAFDLIHC-SR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l--p~~~~sfDlI~s-~~ 82 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+....+...|...+ |+++++||+|++ ..
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHH-HHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 45679999999999999988764 6899999987775554 23333333345667777777 888899999998 43
Q ss_pred cccccc----cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWT----RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~----~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. +.. .+...++++++|+|||||.|++..
T Consensus 138 ~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 138 PL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 32 211 123477999999999999999874
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.4e-12 Score=109.69 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=78.4
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEec-C
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS-R 82 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~-~ 82 (402)
.+..++.+|||+|||+|.++..+++. .++++|+++.++ +.++++.....+...|...+++++++||+|+++ .
T Consensus 42 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 42 AMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILI-----DYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp HHSCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHH-----HHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred HhccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHH-----HHHHHhCCCCcEEEcccccCCCCCCceeEEEECCc
Confidence 34456789999999999999888865 688888887555 444444334566777888888888899999997 4
Q ss_pred cccccc-cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~-~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++++.. ++...+++++.++|+|||.+++..+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 117 VMGFLAEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 444432 2347899999999999999999864
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-12 Score=115.47 Aligned_cols=105 Identities=23% Similarity=0.284 Sum_probs=79.6
Q ss_pred cCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+..++.+|||+|||+|.++..+++. .++++|+++.++..+..... . .....+...|...+++++++||+|+++.+
T Consensus 39 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~-~-~~~i~~~~~d~~~~~~~~~~fD~v~~~~~ 116 (215)
T 2pxx_A 39 ELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA-H-VPQLRWETMDVRKLDFPSASFDVVLEKGT 116 (215)
T ss_dssp GCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTT-T-CTTCEEEECCTTSCCSCSSCEEEEEEESH
T ss_pred hcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcc-c-CCCcEEEEcchhcCCCCCCcccEEEECcc
Confidence 3356789999999999999888765 68999999876654432211 1 12345667788888888899999998776
Q ss_pred ccccc--------------cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWT--------------RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~--------------~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.+.. .+...+++++.++|||||.+++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 117 LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 54432 2457899999999999999999974
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-12 Score=115.37 Aligned_cols=97 Identities=23% Similarity=0.299 Sum_probs=78.1
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++.++ +.++++.. ...+...|...+++++++||+|+++.++
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 117 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKML-----ARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLAL 117 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-----HHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHH-----HHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccc
Confidence 5679999999999999888765 688898887655 44444422 2456677888888888999999998876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|+ .++..+++++.++|||||.+++++
T Consensus 118 ~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 118 HYV-EDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp GGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-chHHHHHHHHHHhcCcCcEEEEEe
Confidence 665 488999999999999999999986
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=118.12 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=79.5
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCC-C--CCCCCeeE
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRL-P--YPSQAFDL 77 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~l-p--~~~~sfDl 77 (402)
.++.+..+|||||||+|.++..+++. .++|+|+++.++..+. +.+.+.+.. ..+...|+..+ + +++++||.
T Consensus 30 ~f~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~-~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 30 LFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACL-ASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp HHSSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred HcCCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHcCCCChhe
Confidence 34556789999999999999888754 5999999998887665 444555554 44666776553 3 67899999
Q ss_pred EEecCcccccccCh--------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 78 IHCSRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 78 I~s~~~~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+++.. .+|.... ..+++++.++|||||.+++++.
T Consensus 109 v~~~~~-~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 109 VQLFFP-DPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp EEEESC-CCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeCC-CCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 998643 3443222 2599999999999999999973
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=117.81 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=85.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++.+. ..|+++| ++.+++.+.++ |+ +..+....+.++ ++ ++||+|+|..
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGHVT----GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-FRNEELDLIWSEG 122 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTTCS----SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHhccC----CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC-CCCCCEEEEEEcC
Confidence 4699999999999999999842 2455555 45666665554 43 344444344433 56 7999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh---------------------hhHHHHHHHHHhcCceEEEee
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------------DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~---------------------~~~~~~~~~~~~~~w~~~~~~ 381 (402)
+++|+ ++..+|.++.|+|||||++++.+.. .....+...+++-.++.....
T Consensus 123 ~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 123 AIYNI----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp CGGGT----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred Cceec----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 99998 3589999999999999999998632 124566777778888876543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=120.16 Aligned_cols=95 Identities=15% Similarity=0.302 Sum_probs=70.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----C-----cccccccCCCCCCCCCCcccEEEEc-
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----G-----LIGVMHDWCEPFDTYPRTYDLLHAA- 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g-----~~~~~~~~~~~~~~~~~sfD~v~~~- 325 (402)
+|||+|||+|.++..|+++|. +|+++| ++.+++.+.++ + -+..+..-.+.++ ++++||+|+|+
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~ 158 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW-----EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA-LDKRFGTVVISS 158 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC-----CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC-CSCCEEEEEECH
T ss_pred cEEEEeccCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC-cCCCcCEEEECC
Confidence 699999999999999999987 556666 45677666654 2 1334443334433 46899999976
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+++|+. ..+...+|.++.|+|||||++++..
T Consensus 159 ~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 159 GSINELD-EADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HHHTTSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccCC-HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5556554 3456899999999999999999985
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-10 Score=112.16 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=78.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-----ccccccCCCCCCCCC-CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-----IGVMHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-----~~~~~~~~~~~~~~~-~sfD~v~~ 324 (402)
.+|||+|||+|.++..+++++.. ..|+.+| ++.+++.+.++ |+ +..+... .+.+++ ++||+|+|
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~---~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D--~~~~~~~~~fD~Ii~ 298 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQ---AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINN--ALSGVEPFRFNAVLC 298 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECS--TTTTCCTTCEEEEEE
T ss_pred CeEEEEeCcchHHHHHHHHHCCC---CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEech--hhccCCCCCeeEEEE
Confidence 57999999999999999998411 2555665 45566554433 43 1113222 223456 79999999
Q ss_pred ccccccccc--cCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 325 AGLFSVESK--RCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 325 ~~~~~~~~~--~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
...|.+... ......+|.++.|+|||||.+++..+. .....+++... ++...... .+.+|+-+..
T Consensus 299 nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg----~~~~~a~~----~~F~V~~~~~ 367 (375)
T 4dcm_A 299 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 367 (375)
T ss_dssp CCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS----CCEEEEEC----SSEEEEEEEC
T ss_pred CCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC----CEEEEeeC----CCEEEEEEcC
Confidence 988876422 122347899999999999999997543 22344444443 33333322 2566766654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=111.07 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=77.5
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCC-CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLP-YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp-~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+. ...+...|...++ +.+++||+|++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTT-KKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 46679999999999988877653 7899999998876665 33444444 3446677776665 56689999998
Q ss_pred cCccccc--------ccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 81 SRCRINW--------TRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 81 ~~~~~~~--------~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
+..++.. ..+...+++++.++|||||.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 7554221 112357999999999999999998654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.5e-13 Score=125.73 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=72.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc----------------ccccccCC--CCCC-CC
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----------------IGVMHDWC--EPFD-TY 315 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~----------------~~~~~~~~--~~~~-~~ 315 (402)
.+|||+|||+|+....++..+. .+|+++| ++.+++.|.+|.- +..++..+ +.++ ++
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~----~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEI----ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CeEEEEecCCcHhHHHHHhcCC----CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 4699999999986666555531 1688888 6788888877621 11111111 2221 35
Q ss_pred C-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 316 P-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 316 ~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
| ++||+|.|..+++|+-+..+...+|.|+.|+|||||+|+++..+
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 6 79999999999988644446689999999999999999999876
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-12 Score=115.58 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=89.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
.+|||+|||.|.++..|++.|.. +|+.+| ++.+++.+.++. -+..+..-...+ +++ ++||+|++..++.
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~----~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP----NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-DFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC----CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-CSCSSCEEEEEEESHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC----cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-CCCCCcccEEEECcchh
Confidence 35999999999999999998751 556666 456676666552 133333323333 466 7999999999998
Q ss_pred ccc------------ccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHH--HhcCceEEEeecCCCCCCceEEEEE
Q 015704 330 VES------------KRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIG--KAMGWHVTLRETAEGPHASYRILTA 395 (402)
Q Consensus 330 ~~~------------~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~l~~ 395 (402)
|+. +..++..+|.++.|+|||||.+++.+..... ..+.++ ....|+.......++ ....+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 195 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRHATYGSG--FHFHLYLM 195 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEEEEESGG--GCEEEEEE
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEEEEecCc--ceEEEEEE
Confidence 764 1224679999999999999999999876322 223333 334687665544222 23445555
Q ss_pred Ee
Q 015704 396 DK 397 (402)
Q Consensus 396 ~k 397 (402)
+|
T Consensus 196 ~~ 197 (215)
T 2pxx_A 196 HK 197 (215)
T ss_dssp EE
T ss_pred Ee
Confidence 55
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-12 Score=120.14 Aligned_cols=117 Identities=11% Similarity=-0.028 Sum_probs=86.1
Q ss_pred cceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~ 324 (402)
-.+|||+|||+|.++..|+++ ++ .|+++| ++.+++.+.++ |+ +..+..-.+.++ ++ ++||+|+|
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~ 191 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFGS-----RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-FDKGAVTASWN 191 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-CCCCCEeEEEE
Confidence 346999999999999999998 65 566666 45667666553 43 334443344433 66 89999999
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----h-------------------hHHHHHHHHHhcCceEEEee
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----D-------------------VMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----~-------------------~~~~~~~~~~~~~w~~~~~~ 381 (402)
..+++|+. +..+|.++.|+|||||++++.+.. . ..+.++.++++-.+++....
T Consensus 192 ~~~l~~~~----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 192 NESTMYVD----LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp ESCGGGSC----HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred CCchhhCC----HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 99999983 689999999999999999998621 0 23556677777777765544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.8e-12 Score=112.49 Aligned_cols=104 Identities=12% Similarity=0.171 Sum_probs=78.4
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEE
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIH 79 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp--~~~~sfDlI~ 79 (402)
++.++.+|||||||+|.++..+++. .++|+|+++.++..+. +.+.+.+.. ..+...|+..++ +++++||.|+
T Consensus 35 f~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~-~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~ 113 (213)
T 2fca_A 35 FGNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVY 113 (213)
T ss_dssp HTSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred cCCCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHH-HHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEE
Confidence 4456779999999999998888753 6899999998886665 344445554 446667777665 6788999998
Q ss_pred ecCcccccccC--------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD--------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d--------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++.. .+|... ...+++++.++|||||.+++.+
T Consensus 114 ~~~~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 114 LNFS-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EESC-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EECC-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 7643 333321 2678999999999999999996
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=114.16 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=90.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC--cc----cccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG--LI----GVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg--~~----~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
..|||+|||+|+|+..|+++|+ ..|+++| +++|+..+..+. ++ ..+.... ...+| .+||+|.|..+
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga----~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~--~~~l~~~~fD~v~~d~s 160 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA----KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAE--PVDFTEGLPSFASIDVS 160 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCC--GGGCTTCCCSEEEECCS
T ss_pred cEEEecCCCccHHHHHHHhCCC----CEEEEEECCHHHHHHHHHhCcccceecccCceecc--hhhCCCCCCCEEEEEee
Confidence 3599999999999999999874 2677777 678888754421 11 1111110 01245 56999999988
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC----------------------hhhHHHHHHHHHhcCceEEEeecCCC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------------------IDVMDELQEIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~----------------------~~~~~~~~~~~~~~~w~~~~~~~~~~ 385 (402)
|.++ ..+|.|+.|+|||||.+++... .+..+.+...+....|.+........
T Consensus 161 f~sl------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi 234 (291)
T 3hp7_A 161 FISL------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPI 234 (291)
T ss_dssp SSCG------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred HhhH------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Confidence 8764 5799999999999999999711 12466788888899999776554322
Q ss_pred ---CCCceEEEEEEe
Q 015704 386 ---PHASYRILTADK 397 (402)
Q Consensus 386 ---~~~~~~~l~~~k 397 (402)
+...|.++.++|
T Consensus 235 ~g~~gn~e~l~~~~~ 249 (291)
T 3hp7_A 235 QGGHGNIEFLAHLEK 249 (291)
T ss_dssp CCGGGCCCEEEEEEE
T ss_pred CCCCcCHHHHHHhhh
Confidence 223366666666
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-12 Score=120.47 Aligned_cols=114 Identities=9% Similarity=-0.048 Sum_probs=80.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCC-----CCCcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDT-----YPRTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~-----~~~sfD~v~~~~~~~ 329 (402)
.+|||+|||+|.++..|+++|+ .|+++| ++.|++.+.++.--..+....+.+.. .+.+||+|+|+.+++
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~-----~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~ 121 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGA-----SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLIN 121 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred CEEEEEeCcchHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhH
Confidence 4699999999999999999987 677777 67888888776421111111122221 236999999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeCh----hhHHHHHHHHHhcCce
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----DVMDELQEIGKAMGWH 376 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----~~~~~~~~~~~~~~w~ 376 (402)
|+.. .+...+|.+|.|+| |||.++++-+. .-...++.......|.
T Consensus 122 ~~~~-~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~ 170 (261)
T 3iv6_A 122 RFTT-EEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLA 170 (261)
T ss_dssp GSCH-HHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHH
T ss_pred hCCH-HHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCee
Confidence 9863 35678999999999 99999999542 1133444444555554
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=120.34 Aligned_cols=102 Identities=11% Similarity=0.054 Sum_probs=73.2
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcC--C----------------------------
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERG--A---------------------------- 56 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~--~---------------------------- 56 (402)
++.+|||||||+|.++..++.. .|+++|+++.++..+.... +... .
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~-~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWL-KKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHH-HTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHH-hcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 5678999999999776655543 6999999998887665322 1110 0
Q ss_pred Cc-EEEeccccC-CCCC---CCCeeEEEecCccccccc---ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 57 PA-MVAAFATRR-LPYP---SQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 57 ~~-~~~~~d~~~-lp~~---~~sfDlI~s~~~~~~~~~---d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. .+...|+.. .|++ .++||+|+|+.+++|... +...++++++++|||||.|++++
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01 155566655 3432 578999999988776543 44689999999999999999996
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-12 Score=120.14 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=79.4
Q ss_pred CCCCeEEEECCccchhHHHHcc--C---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP--R---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~--~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
.++.+|||+|||+|.++..++. . .++++|+++.++..+. +.....+.. ..+...|+..+|++ ++||+|+++
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~ 194 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGAT-RLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSN 194 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHH-HHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHH-HHHHhcCCCCceEEEECchhcCCcc-CCeEEEEEC
Confidence 4678999999999999998852 2 7899999987775554 333333433 45777888888887 899999998
Q ss_pred CcccccccChH---HHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCRINWTRDDG---ILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~~~~~d~~---~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+++|+. ++. .+++++.++|||||.++++..
T Consensus 195 ~~~~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 195 GLNIYEP-DDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp SSGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred ChhhhcC-CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8766665 544 479999999999999999863
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-12 Score=112.44 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=76.8
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCC----ChhhHHhcCcccccccCCCCC---CCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFN----TLPVIYDRGLIGVMHDWCEPF---DTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~----~~~~~~~rg~~~~~~~~~~~~---~~~~~sfD~v~~~~~~ 328 (402)
+|||+|||+|.++..|++.... ..|+++| ++. +++.+..+.-+..+....+.. .+++++||+|+|. +.
T Consensus 60 ~VLDlGcGtG~~~~~la~~~~~---~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~-~~ 135 (210)
T 1nt2_A 60 RVLYLGAASGTTVSHLADIVDE---GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD-IA 135 (210)
T ss_dssp EEEEETCTTSHHHHHHHHHTTT---SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-CC
T ss_pred EEEEECCcCCHHHHHHHHHcCC---CEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-cc
Confidence 5999999999999999886311 1566666 343 345554443222222211221 2345899999997 22
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh------hhHH-----HHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------DVMD-----ELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------~~~~-----~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
.+ .....+|.|+.|+|||||++++.-+. ...+ .++. +++- +++....+...-+....+++++|
T Consensus 136 ~~----~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-l~~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 136 QK----NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKE-MEGD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp ST----THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHH-HHTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred Ch----hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHH-HHhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 22 12345699999999999999998321 0112 2333 3443 88777655432222455566654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-12 Score=110.90 Aligned_cols=104 Identities=15% Similarity=0.043 Sum_probs=78.8
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCC--CCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLP--YPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp--~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..++.. .++++|+++.++..+.. .+...+. ...+...|+..++ +++++||+|+++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIAR-NIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHH-HHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHH-HHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 46679999999999998866654 59999999988876653 3444444 3456677765543 3468999999987
Q ss_pred cccccccChHHHHHHHHH--hcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNR--MLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r--~LkpgG~li~~~~ 113 (402)
.+++..++...++.++.+ +|+|||.+++.+.
T Consensus 122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 122 PYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 644433567899999999 9999999999864
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-12 Score=117.18 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+. ...+...|...+| ++||+|+|..+
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~ 138 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQ-QLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA 138 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCc
Confidence 35679999999999998888743 7899999987775554 33333333 3346666776665 78999999988
Q ss_pred ccccc-cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~-~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+. .++..+++++.++|||||.+++.++
T Consensus 139 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 139 FEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 77875 3678999999999999999999864
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-12 Score=118.28 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=78.6
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+.. ..+...|..++ +++||+|+++.+
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~ 146 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGA 146 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHH-HHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEECCHHHc---CCCccEEEEcch
Confidence 35679999999999999888764 7899999988776665 334444543 44666676655 689999999988
Q ss_pred cccccc--------ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+.+ +...+++++.++|||||.+++.+.
T Consensus 147 ~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 147 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 777742 127899999999999999999864
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-12 Score=119.97 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=79.7
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCC-CCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPY-PSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~-~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.. .....+. ...+...|+..+|+ ++++||+|+|+.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARV-RARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHH-HHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 56789999999999888777653 78999999887765553 3333333 23466778888887 578999999987
Q ss_pred ccccc---ccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINW---TRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~---~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++++. ..++..+++++.++|||||.++++++
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 75542 23567899999999999999999963
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=115.08 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=76.0
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC-ccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR-CRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~-~~~ 85 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++. .++++.....+...|+..+++ +++||+|+|.. +++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~-----~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~ 112 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLT-----HARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVG 112 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHH-----HHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGG
T ss_pred CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHH-----HHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHh
Confidence 56789999999999999888765 6899998876654 444443345667778888777 67999999755 544
Q ss_pred ccc--cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWT--RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~--~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+. .+...+++++.++|||||.+++..+
T Consensus 113 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 113 YLKTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp GCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 443 3457899999999999999999853
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-12 Score=112.01 Aligned_cols=94 Identities=23% Similarity=0.403 Sum_probs=71.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-cccccccCCCCCCCCC-CcccEEEEcccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-LIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~ 332 (402)
.+|||+|||+|.++..| +. .+++++| ++.+++.+.++. -+..++...+.+ +++ ++||+|+|.++++|++
T Consensus 38 ~~vLdiG~G~G~~~~~l---~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL---PY----PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEAL-PFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp SEEEEETCTTCHHHHHC---CC----SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSC-CSCSSCEEEEEEESCTTTCS
T ss_pred CeEEEECCCCCHhHHhC---CC----CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccC-CCCCCcEEEEEEcChhhhcC
Confidence 46999999999999988 32 1566666 567788777763 233333333443 366 7999999999999987
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
++..+|.|+.|+|||||.+++++.+
T Consensus 110 ---~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 110 ---DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 4689999999999999999999754
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-12 Score=120.82 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=73.7
Q ss_pred cceEEeccccchHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~ 325 (402)
-.+|||+|||+|.++..|++. +. .|+++| ++.+++.+.++ +. +..+..-.+.+ +++++||+|+|.
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~ 96 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGS-----KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICH 96 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTC-----EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc-CcCCCeeEEEEC
Confidence 356999999999999999987 34 556666 45666655554 22 33344333443 346899999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
.+++|+.+ +..+|.++.|+|||||++++.++.
T Consensus 97 ~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 97 AFLLHMTT---PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCGGGCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ChhhcCCC---HHHHHHHHHHHcCCCCEEEEEecc
Confidence 99999875 589999999999999999998765
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=111.54 Aligned_cols=104 Identities=15% Similarity=0.050 Sum_probs=76.6
Q ss_pred CCCCCeEEEECCc-cchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-CCCCCCCeeEEEecC
Q 015704 8 IRLLRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-LPYPSQAFDLIHCSR 82 (402)
Q Consensus 8 ~~~~~~VLDiGcG-~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~-lp~~~~sfDlI~s~~ 82 (402)
..++.+|||+||| +|.++..++.. .++++|+++.++..+. +.+...+....+...|... .++++++||+|+++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYAR-RNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHH-HHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3567899999999 99988877754 7899999998876665 4444455555666767533 345668999999986
Q ss_pred ccccccc------------------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTR------------------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~------------------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+++... ....+++++.++|||||.+++..
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 6443221 13678999999999999999975
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=113.24 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=79.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC-cccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR-CRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~-~~~~ 86 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+... ....+....+...|+..++++ ++||+|+++. +++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEK-AMETNRHVDFWVQDMRELELP-EPVDAITILCDSLNY 109 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHH-HHHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHh-hhhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhh
Confidence 35689999999999999988875 789999998887666533 333344556777788777776 7899999875 5555
Q ss_pred cc--cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WT--RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~--~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+. .+...+++++.++|||||.+++.++
T Consensus 110 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 110 LQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp CCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 53 3457899999999999999999853
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=113.39 Aligned_cols=102 Identities=22% Similarity=0.263 Sum_probs=79.0
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+....+...|+..++++ ++||+|+|....++
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR-RKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchh
Confidence 35679999999999999888876 7899999998886665 33344455566777788877765 68999998644344
Q ss_pred cc--cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 87 WT--RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~--~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+. .+...+++++.++|+|||.+++..
T Consensus 118 ~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 33 245789999999999999999875
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.9e-12 Score=113.12 Aligned_cols=96 Identities=23% Similarity=0.249 Sum_probs=73.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC---CCCC-CCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL---PYPS-QAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l---p~~~-~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++.++ +.++++. ...+...+...+ ++.. ++||+|+|+.+
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~-----~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~ 125 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLV-----DAARAAG-AGEVHLASYAQLAEAKVPVGKDYDLICANFA 125 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHH-----HHHHHTC-SSCEEECCHHHHHTTCSCCCCCEEEEEEESC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHH-----HHHHHhc-ccccchhhHHhhcccccccCCCccEEEECch
Confidence 4689999999999999998876 688898887555 4444442 333444444444 5444 45999999877
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++ ..++..+++++.++|||||.++++++
T Consensus 126 l~--~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 126 LL--HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CC--SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hh--hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 55 56889999999999999999999975
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-12 Score=118.97 Aligned_cols=96 Identities=14% Similarity=0.325 Sum_probs=72.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|++.+.. ..|+.+| ++.+++.+.++ |+ +..+..-.+.++ ++ ++||+|+|.++
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPD---AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-FEDSSFDHIFVCFV 114 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC-SCTTCEEEEEEESC
T ss_pred CeEEEecCCCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC-CCCCCeeEEEEech
Confidence 46999999999999999988421 2555555 45666665554 33 333333333433 55 89999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++|+.+ +..+|.++.|+|||||++++.+
T Consensus 115 l~~~~~---~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHLQS---PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 999875 5799999999999999999986
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-12 Score=112.31 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=76.5
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC--CCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR--LPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~--lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.++++. ..+...|+.. +++++++||+|+++.++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~-----~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~v~~~~~l 103 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAA-----EQAKEKL--DHVVLGDIETMDMPYEEEQFDCVIFGDVL 103 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHH-----HHHHTTS--SEEEESCTTTCCCCSCTTCEEEEEEESCG
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHH-----HHHHHhC--CcEEEcchhhcCCCCCCCccCEEEECChh
Confidence 46789999999999999988875 688888876544 4444432 2455566655 67778899999998886
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|+. ++..+++++.++|+|||.++++++
T Consensus 104 ~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 104 EHLF-DPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp GGSS-CHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred hhcC-CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 6654 889999999999999999999964
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=106.99 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=77.4
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+.. ..+...|... ++++++||+|+++..+
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~-~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~ 129 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAK-ENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPI 129 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCc
Confidence 5679999999999999888865 7899999988776655 333344444 4466666554 3456789999998764
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++...+...+++++.++|+|||.+++.++
T Consensus 130 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 130 RAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp TTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 43234567899999999999999999964
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-12 Score=117.70 Aligned_cols=117 Identities=14% Similarity=0.207 Sum_probs=86.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++.+. ..|+++| ++.+++.+.++ |+ +..+....+.++ ++ ++||+|+|..
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVK----GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-FQNEELDLIWSEG 122 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCC----SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-SCTTCEEEEEEES
T ss_pred CeEEEeCCCCCHHHHHHHHhCC----CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-CCCCCEEEEEecC
Confidence 3699999999999999999853 1566666 45666665544 43 334443334433 56 8999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh---------------------hhHHHHHHHHHhcCceEEEee
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------------DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~---------------------~~~~~~~~~~~~~~w~~~~~~ 381 (402)
+++|+ ++..+|.++.|+|||||++++.+.. .....+..++++-.++.....
T Consensus 123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 123 AIYNI----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp CSCCC----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hHhhc----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 99998 3689999999999999999999731 124566777788888776543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=118.51 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=77.4
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHc------C-CCcEEEeccccCCC----CC--CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALER------G-APAMVAAFATRRLP----YP--SQ 73 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~------~-~~~~~~~~d~~~lp----~~--~~ 73 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+........ . ....+...|...++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 5679999999999998888754 78999999988866654433221 1 12346677877765 53 45
Q ss_pred CeeEEEecCcccccc-cC---hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 74 AFDLIHCSRCRINWT-RD---DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 74 sfDlI~s~~~~~~~~-~d---~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+||+|+|+.+ +||. ++ +..+++++.++|||||.++++++
T Consensus 114 ~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 114 CFDICSCQFV-CHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CEEEEEEETC-GGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CEEEEEEecc-hhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 9999999876 5554 33 46899999999999999999974
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-12 Score=119.27 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=73.1
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcC------------------------------
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG------------------------------ 55 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~------------------------------ 55 (402)
++.+|||||||+|.++..++.. .++++|+++.++..+...... .+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH-YLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh-hhhhhccccccccccccccccccccccccccc
Confidence 4689999999999998888754 789999998777655432111 11
Q ss_pred -----------------------------CCcEEEeccccCCC-----CCCCCeeEEEecCcccccc---c--ChHHHHH
Q 015704 56 -----------------------------APAMVAAFATRRLP-----YPSQAFDLIHCSRCRINWT---R--DDGILLL 96 (402)
Q Consensus 56 -----------------------------~~~~~~~~d~~~lp-----~~~~sfDlI~s~~~~~~~~---~--d~~~~l~ 96 (402)
....+...|....+ +.+++||+|+|..++.++. . +...+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 12335555554333 5678999999988753332 1 4578999
Q ss_pred HHHHhcCCCeEEEEEe
Q 015704 97 EVNRMLRAGGYFAWAA 112 (402)
Q Consensus 97 e~~r~LkpgG~li~~~ 112 (402)
+++++|||||+|++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999999984
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=109.55 Aligned_cols=87 Identities=22% Similarity=0.265 Sum_probs=72.9
Q ss_pred CCCCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWT 88 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~ 88 (402)
.++.+|||+|||+|.++..+. ..++++|+++. ...+...|+..+|+++++||+|+++.++ |+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~- 127 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG- 127 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-
T ss_pred CCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc-cc-
Confidence 356799999999999988874 68899999985 2235566778888888999999998775 54
Q ss_pred cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 89 RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 89 ~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.++..+++++.++|+|||.++++.+
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 128 TNIRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCHHHHHHHHHHhCCCCeEEEEEEc
Confidence 5889999999999999999999864
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-12 Score=115.54 Aligned_cols=96 Identities=19% Similarity=0.297 Sum_probs=74.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..|+++|.. +|+.+| ++.+++.+.++.- +..++...+.++ ++ ++||+|+|..+++|
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 45 LRIVDLGCGFGWFCRWAHEHGAS----YVLGLDLSEKMLARARAAGPDTGITYERADLDKLH-LPQDSFDLAYSSLALHY 119 (243)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCC-CCTTCEEEEEEESCGGG
T ss_pred CEEEEEcCcCCHHHHHHHHCCCC----eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhcc-CCCCCceEEEEeccccc
Confidence 46999999999999999998751 455565 4677777776642 233333333333 55 79999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+. ++..+|.++.|+|||||++++++.
T Consensus 120 ~~---~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 120 VE---DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp CS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc---hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 86 468999999999999999999863
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=108.58 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=94.9
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
+|||+|||+|.++..|+++ +.. ..|+++| ++.+++.+.++ |+ +..++...+.++.++ ++||+|++..
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGEN---GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTT---CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 6999999999999999887 111 1677777 56677666554 33 444444334444344 8999999986
Q ss_pred cccc------ccccCCHHHHHHHhhhhccCCcEEEEEeC------hhhHHHHHHHHHhcC---ceEEEeecCCCCCCceE
Q 015704 327 LFSV------ESKRCNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMG---WHVTLRETAEGPHASYR 391 (402)
Q Consensus 327 ~~~~------~~~~~~~~~~l~e~~RvLrpgG~~~~~~~------~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~ 391 (402)
.+.. .....+...+|.++.|+|||||++++..- ......+...+..+. |++...+..+....+-.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp~ 181 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPI 181 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCCE
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCCe
Confidence 5511 11111345799999999999999999852 234566677766665 88888777666666777
Q ss_pred EEEEEec
Q 015704 392 ILTADKR 398 (402)
Q Consensus 392 ~l~~~k~ 398 (402)
+++.+|.
T Consensus 182 ~~~~~~~ 188 (197)
T 3eey_A 182 LVCIEKI 188 (197)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 7777764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-12 Score=119.66 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=70.6
Q ss_pred CcceEEeccccchHHHHHHhh---cCCCceEEEeccCC-CCCChhhHHhc-----Cc---ccccccCCCCCCCCC-----
Q 015704 254 KLRNVLDMRAGFGGFAAALIE---QKFDCWVMNVVPVS-GFNTLPVIYDR-----GL---IGVMHDWCEPFDTYP----- 316 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~---~~~~~~~~~v~~~~-~~~~~~~~~~r-----g~---~~~~~~~~~~~~~~~----- 316 (402)
.-.+|||+|||+|.++..|++ .+. .|+++| ++.+++.+.++ |. +..++...+.++.-+
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 110 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFE-----QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCS-----EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC-----EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccccc
Confidence 345699999999999999994 444 666776 56777776664 22 334443334433212
Q ss_pred -CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEE
Q 015704 317 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYI 356 (402)
Q Consensus 317 -~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~ 356 (402)
++||+|+|..+++|+ ++..+|.++.|+|||||++++
T Consensus 111 ~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 699999999999998 468999999999999999999
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-12 Score=114.29 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=71.4
Q ss_pred ceEEeccccchHH-HHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGF-AAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~-~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||.|.+ ...++..+. +|+++| ++.+++.+.++ +. +..+....+.+ +++ ++||+|+|..+
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY-----KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL-PFKDESMSFVYSYGT 98 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC-----EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC-CSCTTCEEEEEECSC
T ss_pred CEEEEECCCCCHHHHHHHHhCCC-----EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC-CCCCCceeEEEEcCh
Confidence 4699999999997 556666665 566666 45666665554 22 33333333343 366 79999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
++|+. ..++..+|.++.|+|||||++++++.
T Consensus 99 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 99 IFHMR-KNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99985 34578999999999999999999863
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=106.39 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=72.0
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccc-cCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFAT-RRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~-~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+.. ..+...|. +.++..+++||+|+++.
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERIL-SNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHH-HHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHH-HHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECC
Confidence 35569999999999999888765 6899999987775554 333344444 33444454 33443337999999887
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...+ ..+++++.++|||||.+++.+.
T Consensus 103 ~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 103 GLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp -TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred cccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 6443 6789999999999999999864
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-12 Score=122.16 Aligned_cols=98 Identities=15% Similarity=0.226 Sum_probs=70.3
Q ss_pred ceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhcC--------------------------------
Q 015704 256 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRG-------------------------------- 300 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~rg-------------------------------- 300 (402)
.+|||+|||+|.++..|+.+ +. .|+++| ++.+++.|.++-
T Consensus 48 ~~VLDiGCG~G~~~~~la~~~~~~-----~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T 3g07_A 48 RDVLDLGCNVGHLTLSIACKWGPS-----RMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122 (292)
T ss_dssp SEEEEESCTTCHHHHHHHHHTCCS-----EEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCC-----EEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 46999999999999999987 33 666666 456666665541
Q ss_pred --------------------------------cccccc-cCCC---CCCCCC-CcccEEEEcccccccc---ccCCHHHH
Q 015704 301 --------------------------------LIGVMH-DWCE---PFDTYP-RTYDLLHAAGLFSVES---KRCNMSTI 340 (402)
Q Consensus 301 --------------------------------~~~~~~-~~~~---~~~~~~-~sfD~v~~~~~~~~~~---~~~~~~~~ 340 (402)
.+..++ ++.. .+.+++ .+||+|+|.+++.|++ ...++..+
T Consensus 123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM 202 (292)
T ss_dssp -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence 111121 1111 011234 7999999999998874 34467899
Q ss_pred HHHhhhhccCCcEEEEEe
Q 015704 341 MLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 341 l~e~~RvLrpgG~~~~~~ 358 (402)
|.++.|+|||||++++..
T Consensus 203 l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHhCCCcEEEEec
Confidence 999999999999999974
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-12 Score=124.02 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=86.0
Q ss_pred ceEEeccccchHHHHHHhhcC-CCceEEEeccCC-CCCChhhHHhc---------C-----cccccccCCCCCC-----C
Q 015704 256 RNVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVS-GFNTLPVIYDR---------G-----LIGVMHDWCEPFD-----T 314 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~-~~~~~~~v~~~~-~~~~~~~~~~r---------g-----~~~~~~~~~~~~~-----~ 314 (402)
.+|||+|||+|.++..|++.. .. ..|+++| ++.+++.+.++ | -+..+....+.+. +
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEH---GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTT---CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 469999999999999998751 11 2566666 56778777765 4 2334443334331 5
Q ss_pred CC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-----------------------hhHHHHHHHH
Q 015704 315 YP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----------------------DVMDELQEIG 370 (402)
Q Consensus 315 ~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-----------------------~~~~~~~~~~ 370 (402)
+| ++||+|+|..+++|+.+ +..+|.|+.|+|||||++++++.. ...+.+..++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 238 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV 238 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred CCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH
Confidence 67 79999999999999875 689999999999999999998621 1136777888
Q ss_pred HhcCceEE
Q 015704 371 KAMGWHVT 378 (402)
Q Consensus 371 ~~~~w~~~ 378 (402)
.+-.++..
T Consensus 239 ~~aGF~~v 246 (383)
T 4fsd_A 239 AEAGFRDV 246 (383)
T ss_dssp HHTTCCCE
T ss_pred HHCCCceE
Confidence 88778643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=7.5e-12 Score=118.08 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=79.9
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcC------------------ccc------------
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG------------------LIG------------ 303 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg------------------~~~------------ 303 (402)
.+|||+|||+|.++..++.. +. .|+++| ++.+++.+.++- +.+
T Consensus 73 ~~vLDiGcG~G~~~~l~~~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSACSHFE-----DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SEEEEETCTTCCGGGTTGGGGCS-----EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CeEEEECCCcChHHHHhhccCCC-----eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 46999999999954444432 33 677777 667777665420 011
Q ss_pred ------ccc-cCCCCCC----CCC-CcccEEEEcccccccccc-CCHHHHHHHhhhhccCCcEEEEEeC-----------
Q 015704 304 ------VMH-DWCEPFD----TYP-RTYDLLHAAGLFSVESKR-CNMSTIMLEMDRMLRPGGHVYIRDS----------- 359 (402)
Q Consensus 304 ------~~~-~~~~~~~----~~~-~sfD~v~~~~~~~~~~~~-~~~~~~l~e~~RvLrpgG~~~~~~~----------- 359 (402)
.+. +..+.++ .+| ++||+|+|..+|+|+.+. .++..+|.|+.|+|||||+|++.+.
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~ 227 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 227 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCe
Confidence 111 2211122 245 689999999999995531 2578999999999999999999741
Q ss_pred -----hhhHHHHHHHHHhcCceEEEe
Q 015704 360 -----IDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 360 -----~~~~~~~~~~~~~~~w~~~~~ 380 (402)
....+.++.++.+-.+++...
T Consensus 228 ~~~~~~~~~~~l~~~l~~aGf~~~~~ 253 (289)
T 2g72_A 228 RLTVVPVSEEEVREALVRSGYKVRDL 253 (289)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred eeeeccCCHHHHHHHHHHcCCeEEEe
Confidence 123677888888877876543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=111.76 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=72.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|++++. +|+.+| ++.+++.+.++ +. +..+..-...+ +++ ++||+|+|..++
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYGF-----EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTCEEEEEEESCG
T ss_pred CeEEEEeccCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC-CCCCCcEEEEEEcCch
Confidence 4699999999999999999976 666666 45666666554 11 33333323332 355 799999999995
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
.+.. ..++..+|.++.|+|||||.+++.+..
T Consensus 114 ~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 114 VHFE-PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhCC-HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4433 234689999999999999999999865
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-12 Score=119.23 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=67.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-----ccccc-cCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-----IGVMH-DWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-----~~~~~-~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||||||+|.++.+|++.+ ..+|+.+| ++.+++.+.++.- +..+. ++.+-.+++| .+||.|++.-+
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~----~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAP----IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSC----EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CeEEEECCCccHHHHHHHHhC----CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 359999999999999999873 23667777 5778877776532 22222 2212234567 79999986443
Q ss_pred ccc--ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSV--ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~--~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
... +.+..+++.++.|+.|+|||||.|++-+
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 322 2222346899999999999999999864
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=115.90 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=78.6
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+.. ..+...|...+| ++||+|+++.+
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~ 164 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEA 164 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEECChHHCC---CCcCEEEEeCh
Confidence 35679999999999998888754 7899999987776554 333333432 346666776664 78999999988
Q ss_pred ccccc-cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~-~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+. +++..+++++.++|||||.+++.++
T Consensus 165 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 165 FEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 77775 4678999999999999999999864
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=115.20 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=70.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCC-----CCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPY-----PSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~-----~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..++++ .|+++|+++.++..+. ++.... ....+...++. .+++||+|+|+.
T Consensus 45 ~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar-----~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~ 118 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLA-----EALADR-CVTIDLLDITAEIPKELAGHFDFVLNDR 118 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHH-----HHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEES
T ss_pred CcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHH-----HHHHhc-cceeeeeecccccccccCCCccEEEEhh
Confidence 5679999999999999999876 7899999987765443 322111 11222223222 257899999998
Q ss_pred ccccccc-ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~-d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|+.. +...+++++.++| |||.++++..
T Consensus 119 ~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 119 LINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred hhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 8777753 3578999999999 9999999964
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-11 Score=109.18 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=69.6
Q ss_pred CCCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++ ..|+++|+++.++... .+.++.+. +..+...|+.. .+++ ++||+|+|
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~-~~~a~~~~-~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKL-LELVRERN-NIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHH-HHHHHHCS-SEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHH-HHHHhcCC-CeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 4567999999999998887765 3699999999776433 34555432 33445556554 2444 78999998
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.. . ..+...++++++++|||||.++++.
T Consensus 133 ~~~-~--~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DIA-Q--KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CCC-S--TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecc-C--hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 731 2 2223456999999999999999984
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-12 Score=114.25 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCCCC-CCCeeEEEecCc
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPYP-SQAFDLIHCSRC 83 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~-~~lp~~-~~sfDlI~s~~~ 83 (402)
..++.+|||+|||+|.++..+++. .++++|+++.++ +.++++.....+...|. +.+|++ +++||+|+|+
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-- 118 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELL-----KLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-- 118 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHH-----HHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHH-----HHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--
Confidence 356789999999999999999876 788999887655 44444444556777777 678888 8999999986
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEE
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~ 110 (402)
.++..+++++.++|||||.++.
T Consensus 119 -----~~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 119 -----RGPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp -----SCCSGGGGGHHHHEEEEEEEEE
T ss_pred -----CCHHHHHHHHHHHcCCCcEEEE
Confidence 3677899999999999999993
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=104.58 Aligned_cols=98 Identities=13% Similarity=0.013 Sum_probs=74.1
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.++..+.. ..+...|.........+||+|++....
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~ 132 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQ-KNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG 132 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence 35679999999999999888765 7899999998876665 444455554 446666766532233579999976531
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.. +++++.++|||||.+++++.
T Consensus 133 -----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 133 -----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp -----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred -----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 456 99999999999999999964
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.22 E-value=8.8e-12 Score=117.59 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=70.9
Q ss_pred CCCeEEEECCccchhHHHHcc---CCceEEeCCccchHHHHHHHHH----------------HcCC--------------
Q 015704 10 LLRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFAL----------------ERGA-------------- 56 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~---~~v~~vdi~~~~~~~a~~~~a~----------------~~~~-------------- 56 (402)
++.+|||+|||+|.+...++. ..|+++|+++.++..+...... ..+.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 567999999999985443333 2799999998887655431110 0110
Q ss_pred CcEEEeccccC-CCC-----CCCCeeEEEecCccccc---ccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 57 PAMVAAFATRR-LPY-----PSQAFDLIHCSRCRINW---TRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 57 ~~~~~~~d~~~-lp~-----~~~sfDlI~s~~~~~~~---~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+...|+.. +|+ ++++||+|+|+.++++. .+++..+++++.++|||||.|++..
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 01234446655 553 45679999999876553 3357899999999999999999984
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=9.9e-11 Score=104.42 Aligned_cols=100 Identities=14% Similarity=-0.008 Sum_probs=74.9
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+.. ..+...|........++||+|+++..
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~ 117 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRD-NLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS 117 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHH-HHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC
Confidence 35679999999999998888754 69999999988766653 33344443 34566665444333468999998754
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. + +...+++++.++|||||.+++.+.
T Consensus 118 ~-~---~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 118 G-G---MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp T-T---CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred C-c---CHHHHHHHHHHhcCCCeEEEEEec
Confidence 2 2 678999999999999999999863
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=113.18 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=94.6
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-------------------------------
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------------------------------- 301 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------------------------------- 301 (402)
.-.+|||+|||+|.++..++..++ .+|+++| ++.+++.+.++.-
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF----TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE----EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc----CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 345699999999999999998863 3667766 5666766644310
Q ss_pred ----c-cccccCCCCCCC---CC-CcccEEEEccccccccc-cCCHHHHHHHhhhhccCCcEEEEEeCh-----------
Q 015704 302 ----I-GVMHDWCEPFDT---YP-RTYDLLHAAGLFSVESK-RCNMSTIMLEMDRMLRPGGHVYIRDSI----------- 360 (402)
Q Consensus 302 ----~-~~~~~~~~~~~~---~~-~sfD~v~~~~~~~~~~~-~~~~~~~l~e~~RvLrpgG~~~~~~~~----------- 360 (402)
+ ..+..-.+...+ .+ ++||+|+|..+++|+.. ..++..+|.++.|+|||||++++.+..
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 211 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK 211 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcc
Confidence 2 222222222222 22 79999999999995542 225689999999999999999998621
Q ss_pred -----hhHHHHHHHHHhcCceEEEeecCCC-------CCCceEEEEEEec
Q 015704 361 -----DVMDELQEIGKAMGWHVTLRETAEG-------PHASYRILTADKR 398 (402)
Q Consensus 361 -----~~~~~~~~~~~~~~w~~~~~~~~~~-------~~~~~~~l~~~k~ 398 (402)
...+.+..++.+-.+++........ .....-+++++|.
T Consensus 212 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 212 FSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp EECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred ccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 1245788888888888766543221 1124557788875
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=109.81 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=81.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
+|||+|||+|.++..|++.|. +|+++| ++.+++.+.++ |+ +..+....+.+ +++ ++||+|+|. +.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~--~~ 103 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY-----EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF-DIVADAWEGIVSI--FC 103 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC-----EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB-SCCTTTCSEEEEE--CC
T ss_pred CEEEECCCCCHhHHHHHhCCC-----eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc-CCCcCCccEEEEE--hh
Confidence 699999999999999999976 677776 46677666655 33 33333323333 355 799999995 45
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeCh-----------------hhHHHHHHHHHhcCceEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----------------DVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-----------------~~~~~~~~~~~~~~w~~~~~ 380 (402)
|+. ..++..+|.++.|+|||||++++.+.. ...+.++.++. .|++...
T Consensus 104 ~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 104 HLP-SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp CCC-HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred cCC-HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 653 345789999999999999999999521 23567777777 7776653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-12 Score=127.13 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=77.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcE---EEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM---VAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~---~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .++++|+++.++ +.+++++.... +...+.+.+|+++++||+|+++.++
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl 181 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVA-----AKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTL 181 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHH-----HHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCG
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHH-----HHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChH
Confidence 5679999999999999999876 788888886544 55555554433 2223455667778999999999887
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|+. ++..++++++++|||||.+++.++
T Consensus 182 ~h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 182 CHIP-YVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp GGCT-THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhcC-CHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7775 899999999999999999999863
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.8e-11 Score=107.40 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=92.5
Q ss_pred ceEEecccc-chHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAG-FGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g-~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+||| +|.++..+++. +. .|+++| ++.+++.+.++ |+ +..++...+.+.+++ ++||+|+|.-
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFFNC-----KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHHCC-----EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 469999999 99999999988 55 566666 45666655443 43 344443333345666 8999999986
Q ss_pred cccccccc----------------CCHHHHHHHhhhhccCCcEEEEEeC--hhhHHHHHHHHHhcCceEEEeecCCCCCC
Q 015704 327 LFSVESKR----------------CNMSTIMLEMDRMLRPGGHVYIRDS--IDVMDELQEIGKAMGWHVTLRETAEGPHA 388 (402)
Q Consensus 327 ~~~~~~~~----------------~~~~~~l~e~~RvLrpgG~~~~~~~--~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 388 (402)
.+.+..+. ..+..+|.++.|+|||||++++..+ ......+.+.+++..|++.......+ ..
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g-~~ 210 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVG-TR 210 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCC-C-
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCC-Ce
Confidence 66553321 1136899999999999999999543 35577888888999998877654332 23
Q ss_pred ceEEEEEEe
Q 015704 389 SYRILTADK 397 (402)
Q Consensus 389 ~~~~l~~~k 397 (402)
--.+|..+|
T Consensus 211 ~~~~l~f~~ 219 (230)
T 3evz_A 211 WRHSLIFFK 219 (230)
T ss_dssp CEEEEEEEC
T ss_pred EEEEEEEec
Confidence 355666665
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=113.63 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=74.2
Q ss_pred CCCCeEEEECCccchhHHHH-cc---CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYL-LP---RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L-~~---~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||||||+|.++..+ ++ ..|+++|+++.++..++.. +.+.+.. ..+..+|...+| +++||+|++...
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~-~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~ 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV-IEGLGVDGVNVITGDETVID--GLEFDVLMVAAL 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHH-HHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHH-HHhcCCCCeEEEECchhhCC--CCCcCEEEECCC
Confidence 46789999999999765433 32 3899999999888777643 3344443 346677777665 689999997543
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.++...+++++.++|||||.+++..
T Consensus 198 ----~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 198 ----AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp ----CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ----ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 4578899999999999999999985
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=7e-12 Score=121.50 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=75.8
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.+.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+....+...|.... .+++||+|+|+.+++
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~-~~~~~~~~~~~~~~~d~~~~--~~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASR-ATLAANGVEGEVFASNVFSE--VKGRFDMIISNPPFH 272 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHH-HHHHHTTCCCEEEECSTTTT--CCSCEEEEEECCCCC
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCEEEEcccccc--ccCCeeEEEECCCcc
Confidence 4569999999999998887643 7999999988776665 33344555555666665443 367999999987754
Q ss_pred cc----ccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NW----TRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~----~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+. ..+...+++++.++|||||.+++...
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 31 22457899999999999999999864
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=105.98 Aligned_cols=129 Identities=18% Similarity=0.256 Sum_probs=83.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..+++.+. +++.+| ++.+++.+.++ |+ +..++.... ..++ ++||+|++.
T Consensus 54 ~~vLdiG~G~G~~~~~~~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~D~v~~~ 126 (194)
T 1dus_A 54 DDILDLGCGYGVIGIALADEVK-----STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY--ENVKDRKYNKIITN 126 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTT--TTCTTSCEEEEEEC
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchh--cccccCCceEEEEC
Confidence 4699999999999999998865 556665 45566555544 32 223332221 1233 799999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeChh-hHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
..+.|.. .++..+|.++.|+|||||.+++..... ....+.+.+++.-+++....... ...++.++|
T Consensus 127 ~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~k 193 (194)
T 1dus_A 127 PPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKG----GYRVLKSKK 193 (194)
T ss_dssp CCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEET----TEEEEEEEC
T ss_pred CCcccch--hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCC----cEEEEEEee
Confidence 8877632 245799999999999999999997653 23335555555433444433321 355555554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-11 Score=104.49 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=78.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..+++... ...|+.+| ++.+++.+.++ |+ + .++ +..+.++..+++||+|++..
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRSTP---QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTSS---SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHHCC---CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence 4699999999999999998831 23677777 56677776654 33 2 333 22233332227999999998
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~ 378 (402)
++.| ..++.++.|+|||||++++.+.. .....+...+++..+++.
T Consensus 103 ~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 103 GLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp -TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred cccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 8877 47999999999999999998754 345566666666666544
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=112.12 Aligned_cols=98 Identities=19% Similarity=0.275 Sum_probs=70.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEc-ccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAA-GLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~-~~~ 328 (402)
.+|||+|||+|.++..|+++|. +|+++| ++.+++.+.++ |+ +..+..-...+ +++++||+|+|. .++
T Consensus 43 ~~vLDlGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 43 RRVLDLACGTGIPTLELAERGY-----EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-AFKNEFDAVTMFFSTI 116 (252)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-CCCSCEEEEEECSSGG
T ss_pred CEEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhc-ccCCCccEEEEcCCch
Confidence 4799999999999999999986 566666 56677666554 33 33333322332 245799999986 445
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
.|.. ..++..+|.++.|+|||||.+++..+.
T Consensus 117 ~~~~-~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 117 MYFD-EEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCC-HHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 5543 345689999999999999999987543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.3e-11 Score=105.29 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=81.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|++.+.. ..|+.+| ++.+++.+.++ |+ +..+........+...+||+|++...+
T Consensus 42 ~~vLDiG~G~G~~~~~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~ 118 (204)
T 3e05_A 42 LVMWDIGAGSASVSIEASNLMPN---GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSG 118 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTT---SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCT
T ss_pred CEEEEECCCCCHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCC
Confidence 46999999999999999998621 1566666 45666666554 43 333332222212222689999999766
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~ 379 (402)
. ++..+|.++.|+|||||++++.... +....+...+++..|++..
T Consensus 119 ~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 119 G------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp T------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEE
T ss_pred c------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeE
Confidence 4 4679999999999999999999654 5567777888888886443
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=111.70 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=92.7
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccc-cCCCCCCCCCCcccEEE
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTYDLLH 323 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~sfD~v~ 323 (402)
.+...+|||+|||+|.++..|+++..+.. ++..|.+.+++.+.++ |+ +.... +.. .++|.+||+|+
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~p~~~D~v~ 240 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLS---GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF---DPLPAGAGGYV 240 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---SCCCCSCSEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCe---EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC---CCCCCCCcEEE
Confidence 34567899999999999999998643322 3333434555555433 43 33332 222 34566999999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------------hhHHHHHHHHHhcCceEEEee
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------------~~~~~~~~~~~~~~w~~~~~~ 381 (402)
|.++++|+++. ....+|.++.|+|||||+++|.|.. ...+.++.++++-.++.....
T Consensus 241 ~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 319 (332)
T 3i53_A 241 LSAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH 319 (332)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 99999998863 3479999999999999999998742 114567777788888876555
Q ss_pred cCCCCCCceEEEEEEe
Q 015704 382 TAEGPHASYRILTADK 397 (402)
Q Consensus 382 ~~~~~~~~~~~l~~~k 397 (402)
.. + . ..++.++|
T Consensus 320 ~~-~--~-~~vie~r~ 331 (332)
T 3i53_A 320 PI-S--Y-VSIVEMTA 331 (332)
T ss_dssp EC-S--S-SEEEEEEE
T ss_pred EC-C--C-cEEEEEee
Confidence 42 1 1 66777765
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-11 Score=115.87 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=79.4
Q ss_pred HHHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-------------ccccccc
Q 015704 242 ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-------------LIGVMHD 307 (402)
Q Consensus 242 ~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-------------~~~~~~~ 307 (402)
..+.+.+......-.+|||+|||+|.++..|++.+. ..|+++| ++.+++.+.++. -+..+..
T Consensus 22 ~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 22 GEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI----NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA 97 (313)
T ss_dssp HHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred HHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC----CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence 345444432212334699999999999999987632 2566766 567777666541 1233333
Q ss_pred CCCCCC---CCC---CcccEEEEccccccc-cccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 308 WCEPFD---TYP---RTYDLLHAAGLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 308 ~~~~~~---~~~---~sfD~v~~~~~~~~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
-++.++ +|+ ++||+|+|..+++|. .+..++..+|.++.|+|||||+++++...
T Consensus 98 D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 98 DSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 334433 253 499999999999887 54445679999999999999999999876
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=119.19 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=78.8
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC----cEEEeccccCCCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP----AMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~----~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+.. .+...+.. ..+...|... ++++++||+|+|+
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~-n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRL-NVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN 299 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHH-HHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence 3479999999999999888754 69999999988766653 34444432 3356666554 5667899999998
Q ss_pred Cccccc--c-cC-hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHH
Q 015704 82 RCRINW--T-RD-DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHW 126 (402)
Q Consensus 82 ~~~~~~--~-~d-~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~ 126 (402)
..+++. . .. ...+++++.++|||||.++++..........+.+.+
T Consensus 300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~f 348 (375)
T 4dcm_A 300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF 348 (375)
T ss_dssp CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHH
T ss_pred CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhc
Confidence 775542 1 12 247899999999999999998643333333334433
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-11 Score=108.32 Aligned_cols=97 Identities=9% Similarity=0.085 Sum_probs=75.2
Q ss_pred CCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCC---CCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP---SQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~---~~sfDlI~s~ 81 (402)
++.+|||+|||+|.++..++. ..++++|+++.++..+. +.+...+.. ..+...|+++++++ +++||+|+|.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLE-KLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 567999999999998887772 27999999998876665 334444553 45667777777654 5789999986
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. .+...+++++.++|||||.+++..
T Consensus 149 ~~-----~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 149 AV-----ARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cc-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 42 467899999999999999999874
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-11 Score=115.17 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=79.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .|+++|+++ ++..+. +.++..+.. ..+...|++.+++++++||+|+|+.+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 5679999999999999888875 799999994 665554 555555554 457788899999988999999986542
Q ss_pred c--ccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 I--NWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~--~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
. +...+...++.++.++|||||.++..
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 2 33346788999999999999999754
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-11 Score=113.55 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=71.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc---ccccccCCCCCC---CCC--CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL---IGVMHDWCEPFD---TYP--RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~---~~~~~~~~~~~~---~~~--~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++.+. +|+++| ++.+++.+.++.- +..+....+.++ .|+ .+||+|+|..
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP-----RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS-----CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CeEEEEcCCCCHHHHHHHHhCC-----CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 4599999999999999999986 566666 5677777766532 222222111111 122 2499999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+++|+.+ .++..+|.++.|+|||||++++.+.
T Consensus 133 ~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 133 GFHHIPV-EKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSTTSCG-GGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhhcCCH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9999873 3578999999999999999988863
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.6e-11 Score=109.04 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=87.3
Q ss_pred ceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC---CCCcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT---YPRTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~---~~~sfD~v~ 323 (402)
.+|||+|||+|.++..|+.. +. .|+++| ++.+++.+.++ |+ +..++...+.++. .+.+||+|+
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHL-----HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTC-----EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence 46999999999999999853 33 566666 45666655443 44 4445443344332 247999999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh---hhHHHHHHHHHhcCceEEEeec--CCCCCCceEEEEEEec
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---DVMDELQEIGKAMGWHVTLRET--AEGPHASYRILTADKR 398 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~---~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~l~~~k~ 398 (402)
|..+ .++..++.++.|+|||||++++.+.. +....+.+.++...+++..... .....+.-.+++.+|.
T Consensus 147 ~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 147 ARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp EECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred Eecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence 9762 35789999999999999999998643 3455666777788887654432 1112234455666664
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-11 Score=115.99 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=73.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCC-C-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTY-P-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~-~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..+++.+. ..|+++| ++.+++.+.++ |+ +..+..-.+.+ ++ + ++||+|+|.
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI----GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-HMDLGKEFDVISSQ 140 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC----SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-CCCCSSCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-ccCCCCCcCEEEEC
Confidence 4699999999999999988763 1566666 45667666554 22 33343333333 34 4 799999999
Q ss_pred cccccc-cccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 326 GLFSVE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 326 ~~~~~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
.+++|. .+..++..+|.++.|+|||||+++++.+.
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 999773 33345789999999999999999999876
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-11 Score=108.88 Aligned_cols=102 Identities=11% Similarity=0.155 Sum_probs=76.1
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC--CCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP--YPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp--~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..++++ .++++|+++.++..+. +.+...+.. ..+...|+..++ +++++||+|+|+.
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~-~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAK-RSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHH-HHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHH-HHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 5679999999999999988876 6899999988776665 334444543 456677776665 4578999999986
Q ss_pred ccccc----c---------------cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINW----T---------------RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~----~---------------~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.++.. . .+...+++++.++|||||.+++..
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 64432 0 123578999999999999999985
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=112.76 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=87.5
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChh--hHHhcCc---ccccc-cCCCCCCCCCCcccEEEEc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLP--VIYDRGL---IGVMH-DWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~--~~~~rg~---~~~~~-~~~~~~~~~~~sfD~v~~~ 325 (402)
.....+|||+|||+|.++..|+++..++.++ ..|.+.++. .+...++ +.... +.. .++| +||+|++.
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~---~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~---~~~p-~~D~v~~~ 254 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGV---LLDRAEVVARHRLDAPDVAGRWKVVEGDFL---REVP-HADVHVLK 254 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEE---EEECHHHHTTCCCCCGGGTTSEEEEECCTT---TCCC-CCSEEEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEE---EecCHHHhhcccccccCCCCCeEEEecCCC---CCCC-CCcEEEEe
Confidence 4456789999999999999999875443333 232211111 0111122 22222 222 3456 99999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-------------------------hhHHHHHHHHHhcCceEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-------------------------DVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-------------------------~~~~~~~~~~~~~~w~~~~~ 380 (402)
++|+|+.+. +...+|.++.|+|||||+++|.|.. ...+.+++++++-.++....
T Consensus 255 ~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 333 (348)
T 3lst_A 255 RILHNWGDE-DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRV 333 (348)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 999998853 3369999999999999999998631 12456777888888887665
Q ss_pred ecCCCCCCceEEEEEEe
Q 015704 381 ETAEGPHASYRILTADK 397 (402)
Q Consensus 381 ~~~~~~~~~~~~l~~~k 397 (402)
... .....++.++|
T Consensus 334 ~~~---~~~~~vie~~p 347 (348)
T 3lst_A 334 VGT---SSVMSIAVGVP 347 (348)
T ss_dssp EEC---SSSCEEEEEEE
T ss_pred EEC---CCCcEEEEEEe
Confidence 542 12455665554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.6e-11 Score=109.56 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=73.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHH-----HcCCC-cEEEeccccC-CC--CCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL-----ERGAP-AMVAAFATRR-LP--YPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~-----~~~~~-~~~~~~d~~~-lp--~~~~sfD 76 (402)
+..+|||||||+|.++..+++. .++|+|+++.++..+...... ..+.. ..+...|+.. ++ +++++||
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 4568999999999999988864 689999999888666533221 12333 4466777665 66 7789999
Q ss_pred EEEecCcccccccC--------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 77 LIHCSRCRINWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 77 lI~s~~~~~~~~~d--------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.|+++.. .+|... ...+++++.++|||||.|++.+.
T Consensus 126 ~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 126 KMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 9986543 233211 14799999999999999999863
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.9e-11 Score=107.10 Aligned_cols=129 Identities=11% Similarity=0.111 Sum_probs=84.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|+..... ..|+.+| ++.+++.+.++ |+ +..++...+.++ -+.+||+|+|..+
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPE---AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred CeEEEECCCCCHHHHHHHHHCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc-
Confidence 36999999999999999976211 1566666 45566555443 43 344443333322 1279999998642
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEee--cCCCCCCceEEEEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE--TAEGPHASYRILTADK 397 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~l~~~k 397 (402)
.++..++.++.|+|||||++++.......+.++.+.+ .|+..... ......+...+++++|
T Consensus 142 ------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k 204 (207)
T 1jsx_A 142 ------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKA 204 (207)
T ss_dssp ------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEE
T ss_pred ------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEe
Confidence 2467999999999999999999977666667777666 78765422 2122234566666666
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-11 Score=107.83 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=75.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC---CcEEEeccccCCC--CCCCC-eeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA---PAMVAAFATRRLP--YPSQA-FDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~---~~~~~~~d~~~lp--~~~~s-fDlI~s 80 (402)
++.+|||+|||+|.++..++.+ .|+++|+++.++..+. +.+...+. ...+...|+..+. +++++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLK-KNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHH-HHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 4679999999999998875544 6899999998887665 34444554 3456666755432 23578 999998
Q ss_pred cCcccccccChHHHHHHH--HHhcCCCeEEEEEeCC
Q 015704 81 SRCRINWTRDDGILLLEV--NRMLRAGGYFAWAAQP 114 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~--~r~LkpgG~li~~~~~ 114 (402)
+.. ++ ..+...+++++ .++|+|||.+++++.+
T Consensus 132 ~~~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 132 DPP-FH-FNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CCC-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCC-CC-CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 866 34 33567888888 6789999999998643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-11 Score=111.88 Aligned_cols=102 Identities=11% Similarity=0.006 Sum_probs=74.8
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC-----CCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-----QAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~-----~sfDlI~s~ 81 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.... ......+...|+..+++.. .+||+|+++
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEEc
Confidence 45679999999999999988765 7999999987664443211 1123456677776655332 249999998
Q ss_pred Cccccccc-ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCRINWTR-DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~~~~~-d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.++++... +...+++++.++|||||.+++..+
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 77555542 468999999999999999888864
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=103.35 Aligned_cols=111 Identities=11% Similarity=0.087 Sum_probs=77.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
..|||+|||+|.++..|++++. .|+++| ++.+++.+.++ |+ +..++...+...+...+||+|++...
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~-----~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~ 131 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGG-----RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG 131 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred CEEEEecCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc
Confidence 4599999999999999999876 566666 45667665554 33 33343322221112258999998853
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~ 379 (402)
+ ++. ++.++.|+|||||++++.... +....+.+.+++..+++..
T Consensus 132 ~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 132 G-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp C-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred c-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence 3 346 999999999999999998753 5566666777776676544
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-11 Score=119.43 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=92.5
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccc-cCCCCCCCCCCcccEEEE
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTYDLLHA 324 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~sfD~v~~ 324 (402)
...++|||+|||+|.++..|+++.... .++..|.+.+++.+.++ |+ +..+. +..+.-.++|++||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEE
Confidence 355789999999999999999864332 34444445566655554 33 33332 222211146789999999
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------------------------hhHHHHHHHHHhcC
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------------------------DVMDELQEIGKAMG 374 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------------------------~~~~~~~~~~~~~~ 374 (402)
.++++|+.+. +...+|.++.|+|||||++++.|.. ...+.+++++++-.
T Consensus 255 ~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AG 333 (363)
T 3dp7_A 255 SQFLDCFSEE-EVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAG 333 (363)
T ss_dssp ESCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTT
T ss_pred echhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcC
Confidence 9999998853 4568999999999999999998631 01344556666666
Q ss_pred ceEEEeecCCCCCCceEEEEEEec
Q 015704 375 WHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 375 w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
++........ .....++.++|.
T Consensus 334 f~~v~~~~~~--g~~~svi~~~~~ 355 (363)
T 3dp7_A 334 LEVEEIQDNI--GLGHSILQCRLK 355 (363)
T ss_dssp EEESCCCCCB--TTTBEEEEEEEC
T ss_pred CeEEEEEeCC--CCCceEEEEeec
Confidence 6665443322 234677777664
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-11 Score=107.86 Aligned_cols=100 Identities=8% Similarity=0.137 Sum_probs=74.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..++.. .|+++|+++.++.-+. +.+...+....+...|.... .+.++||+|++..++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar-~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLS-SIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHH-HHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHH
Confidence 45789999999999999988443 8999999998886665 44555566533333443322 356889999998876
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
++. ++.+..+.++.+.|+|||+++--
T Consensus 126 HlL-~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 126 PVL-KQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp HHH-HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred Hhh-hhhHHHHHHHHHHhCCCCEEEEe
Confidence 665 67777788999999999988765
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-11 Score=110.53 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=72.7
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEecc---ccCCCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFA---TRRLPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d---~~~lp~~~~sfDlI~s 80 (402)
+++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+.+.. +......+ .+..++..+++|+|++
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~~-ni~~V~~d~~~p~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDRR-NIFPILGDARFPEKYRHLVEGVDGLYA 153 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTCT-TEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhhc-CeeEEEEeccCccccccccceEEEEEE
Confidence 57889999999999999988864 6899999998876553 3333322 22233333 3445667789999997
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. +++.+...++.++.+.|||||.++++.
T Consensus 154 d~---~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 154 DV---AQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CC---CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec---cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 52 333467889999999999999999974
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.5e-11 Score=106.35 Aligned_cols=121 Identities=10% Similarity=0.137 Sum_probs=79.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-CC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~~-~sfD~v~~~~ 326 (402)
..|||+|||+|.++..|++... ..+|+++| ++.+++.+.++ |+ +..++.-...++. ++ ++||.|++..
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p---~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNP---DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCT---TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred ceEEEEecCCCHHHHHHHHHCC---CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 3599999999999999998731 12677777 56777666553 44 3444433333322 56 7999998763
Q ss_pred ccc-----cccccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCceEEE
Q 015704 327 LFS-----VESKRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 327 ~~~-----~~~~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w~~~~ 379 (402)
.-. |...+-....+|.++.|+|||||.+++.. .....+.+.+.+....|+...
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~ 175 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTY 175 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 222 11111123689999999999999999975 444455556666665676543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=101.33 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=70.5
Q ss_pred CCCCeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++.. .....+...|+.. ++++++||+|+|+..+++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~ 91 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNPPYVPD 91 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTT
T ss_pred CCCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECCCCccC
Confidence 45679999999999999999877 78899998765532 2234466667655 6666899999998764433
Q ss_pred ccC--------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 88 TRD--------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 88 ~~d--------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+. ...++.++.+.| |||.+++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 92 TDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp CCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred CccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence 221 357889999999 999999985
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-11 Score=105.63 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=73.8
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|.++..+++. .++++|+++..+..+.. .....+.. ..+...|....+.++++||+|+++....
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~ 154 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARR-RLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPP 154 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHH-HHHHcCCCceEEEECCcccCCccCCCccEEEEccchh
Confidence 35679999999999999888764 78999999887766553 33334443 4466677666665678999999987755
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++. + ++.++|||||.++++..
T Consensus 155 ~~~-~------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 155 EIP-T------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp SCC-T------HHHHTEEEEEEEEEEEC
T ss_pred hhh-H------HHHHhcccCcEEEEEEc
Confidence 554 2 68999999999999964
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=108.80 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCcc------chHHHHHHHHHHcCC--CcEEEecc---ccCCCCCC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPK------DVHENQIQFALERGA--PAMVAAFA---TRRLPYPS 72 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~------~~~~a~~~~a~~~~~--~~~~~~~d---~~~lp~~~ 72 (402)
.++.+|||||||+|.++..+++ ..++++|+++. ++..+. +.....+. ...+...| ...+|+++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 120 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAW-NHLLAGPLGDRLTVHFNTNLSDDLGPIAD 120 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHH-HHHHTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHH-HHHHhcCCCCceEEEECChhhhccCCCCC
Confidence 4667999999999998887764 36899999986 665554 33333333 23455555 45667788
Q ss_pred CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++||+|+|+.+++|+. ++..+++.+.++++|||.+++...
T Consensus 121 ~~fD~v~~~~~l~~~~-~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 121 QHFDRVVLAHSLWYFA-SANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp CCCSEEEEESCGGGSS-CHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CCEEEEEEccchhhCC-CHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999999998866654 677777777777778999999864
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-11 Score=106.46 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=84.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|++.+. ..|+++| ++.+++.+.++ |+ +..+.. ++..++ ++||+|++..+
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~~~~~~fD~i~~~~~ 134 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA----KSVLATDISDESMTAAEENAALNGIYDIALQKT---SLLADVDGKFDLIVANIL 134 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEES---STTTTCCSCEEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHCCC----CEEEEEECCHHHHHHHHHHHHHcCCCceEEEec---cccccCCCCceEEEECCc
Confidence 3699999999999999998853 2566666 45666666554 43 333332 223344 89999999987
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC-hhhHHHHHHHHHhcCceEEEeecC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
++++ ..+|.++.|+|||||++++++. ......+...+.+-.++.......
T Consensus 135 ~~~~------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 185 (205)
T 3grz_A 135 AEIL------LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRA 185 (205)
T ss_dssp HHHH------HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHH------HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEeecc
Confidence 7663 5899999999999999999853 345777888888888888765543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-10 Score=111.45 Aligned_cols=138 Identities=14% Similarity=0.209 Sum_probs=94.2
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh----cCc---ccccc-cCCCCCCCCCCcccEEE
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD----RGL---IGVMH-DWCEPFDTYPRTYDLLH 323 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~----rg~---~~~~~-~~~~~~~~~~~sfD~v~ 323 (402)
.....+|||+|||+|.++..|+++..++ .++..|.+.+++.+.+ .|+ +.... +.. .++|.+||+|+
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~---~~~p~~~D~v~ 273 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGL---RGTLLERPPVAEEARELLTGRGLADRCEILPGDFF---ETIPDGADVYL 273 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---TCCCSSCSEEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCC---eEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC---CCCCCCceEEE
Confidence 4456789999999999999999874332 2333333445554443 243 33332 222 34566899999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------------------hhHHHHHHHHHhcCceEEE
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------------------DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------------------~~~~~~~~~~~~~~w~~~~ 379 (402)
+.++++|+.+. ....+|.++.|+|||||+++|.|.. ...+.++.++++-.|+...
T Consensus 274 ~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 274 IKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352 (369)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred hhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence 99999998753 2347999999999999999997621 1145677788888888776
Q ss_pred eecCCCCCCceEEEEEEec
Q 015704 380 RETAEGPHASYRILTADKR 398 (402)
Q Consensus 380 ~~~~~~~~~~~~~l~~~k~ 398 (402)
.... ...+..++.++|.
T Consensus 353 ~~~~--~~~~~svie~~~a 369 (369)
T 3gwz_A 353 SLPC--GAGPVRIVEIRRA 369 (369)
T ss_dssp EEEC--SSSSEEEEEEEEC
T ss_pred EEEC--CCCCcEEEEEEeC
Confidence 6541 1235778888763
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.4e-11 Score=110.78 Aligned_cols=92 Identities=18% Similarity=0.322 Sum_probs=73.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++ +.++++.....+...|...+|+++++||+|+++.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~- 157 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-----KAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA- 157 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-----HHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHH-----HHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-
Confidence 46779999999999998888764 688898887655 44555554556777788888988899999998643
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...++++.++|||||.+++.++
T Consensus 158 -------~~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 158 -------PCKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp -------CCCHHHHHHHEEEEEEEEEEEE
T ss_pred -------hhhHHHHHHhcCCCcEEEEEEc
Confidence 2358999999999999999964
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-11 Score=111.22 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=74.6
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC------------------------------
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA------------------------------ 56 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~------------------------------ 56 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+.... ...+.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWL-KKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHH-TTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHH-hcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4579999999999988877764 6899999987775554222 11110
Q ss_pred Cc-EEEeccccCCC-CCC---CCeeEEEecCccccccc---ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 57 PA-MVAAFATRRLP-YPS---QAFDLIHCSRCRINWTR---DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 57 ~~-~~~~~d~~~lp-~~~---~sfDlI~s~~~~~~~~~---d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. .+...|+...+ +++ ++||+|+|+.++++... ++..+++++.++|||||.+++..
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 03 45666766553 355 89999999888664332 56789999999999999999986
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-11 Score=111.77 Aligned_cols=107 Identities=16% Similarity=0.095 Sum_probs=71.1
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC----CceEEeCC-ccchHHHH--HHHHHHcCCC-cEEEeccccCCCCC-CCCee
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIA-PKDVHENQ--IQFALERGAP-AMVAAFATRRLPYP-SQAFD 76 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~-~~~~~~a~--~~~a~~~~~~-~~~~~~d~~~lp~~-~~sfD 76 (402)
.+..++.+|||||||+|.++..++++ .|+|+|++ +.++..+. .+.+.+.+.. ..+...|++.+|.. .+.+|
T Consensus 20 ~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~ 99 (225)
T 3p2e_A 20 IIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIAD 99 (225)
T ss_dssp HHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEE
T ss_pred HhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEE
Confidence 34556789999999999999988743 68999999 44443321 1222233444 45667787777632 25667
Q ss_pred EEEecCcc----cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCR----INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~----~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.|+++... .+...+...++++++|+|||||.+++.+
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 77654321 1222234678999999999999999953
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.9e-11 Score=111.17 Aligned_cols=126 Identities=12% Similarity=0.113 Sum_probs=81.7
Q ss_pred ceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|++++.++.+ |+ .|+++| ++.+++.|.++ |+ +..+..-. ..+| ++||+|++.
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~ga-----~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa---~~l~d~~FDvV~~~ 195 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYGM-----RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE---TVIDGLEFDVLMVA 195 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTCC-----EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG---GGGGGCCCSEEEEC
T ss_pred CEEEEECCCccHHHHHHHHHccCC-----EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch---hhCCCCCcCEEEEC
Confidence 46999999999887665433 44 677777 56777777665 55 33333222 3355 899999987
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHH----HHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMD----ELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~----~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
.+ . .+.+.++.|+.|+|||||.+++++...... .+.+- ..-.|+.....+..++ ....+.+++|
T Consensus 196 a~---~---~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~-~~~gf~~~~~~~p~~~-v~N~vv~a~k 263 (298)
T 3fpf_A 196 AL---A---EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDD-DITGFRRAGVVLPSGK-VNNTSVLVFK 263 (298)
T ss_dssp TT---C---SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTG-GGTTEEEEEEECCCTT-CCCEEEEEEE
T ss_pred CC---c---cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChh-hhhhhhheeEECCCCC-cCcEEEEEEc
Confidence 54 2 356899999999999999999997532111 00011 1226877776664432 2455677777
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.7e-10 Score=106.84 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=90.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccc-cCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|+++..+. .++.+|.+.+++.+.++ |+ +..+. +.. .++|.+||+|++.++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~D~v~~~~v 242 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA---RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDML---QEVPSNGDIYLLSRI 242 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC---EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTT---TCCCSSCSEEEEESC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC---EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCC---CCCCCCCCEEEEchh
Confidence 789999999999999999874222 34444445566655543 22 33333 222 246688999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh-------------------------hhHHHHHHHHHhcCceEEEeec
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-------------------------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-------------------------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
++|+.+. ....+|.++.|+|||||++++.|.. ...+.+++++++-.++......
T Consensus 243 l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 243 IGDLDEA-ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp GGGCCHH-HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 9998753 3459999999999999999998631 0144556777777787655443
Q ss_pred CCCCCCceEEEEEEe
Q 015704 383 AEGPHASYRILTADK 397 (402)
Q Consensus 383 ~~~~~~~~~~l~~~k 397 (402)
.. ....++.++|
T Consensus 322 ~~---~~~~~i~~~~ 333 (334)
T 2ip2_A 322 LP---METRMIVAAR 333 (334)
T ss_dssp ET---TTEEEEEEEE
T ss_pred CC---CCCEEEEEEe
Confidence 22 2467888876
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-10 Score=103.82 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=84.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-cc-----ccccCC-CCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IG-----VMHDWC-EPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~-----~~~~~~-~~~~~~~~sfD~v~~~~~ 327 (402)
.+|||+|||+|.|+..|+++|+ ..|+++| +++|++.+..+.- +. .+.... +.+.. ..||.+.+..+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~----~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v 112 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGA----KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVS 112 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCS
T ss_pred CEEEEEccCCCHHHHHHHhcCC----CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEE
Confidence 3599999999999999999974 1677777 6788887766422 10 111111 22221 12344444444
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------------hhHHHHHHHHHhcCceEEEeecCCC
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------DVMDELQEIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------------~~~~~~~~~~~~~~w~~~~~~~~~~ 385 (402)
|.++ ..+|.|+.|+|||||++++.... ...+.+...+....|++...+...-
T Consensus 113 ~~~l------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi 186 (232)
T 3opn_A 113 FISL------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPI 186 (232)
T ss_dssp SSCG------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSS
T ss_pred hhhH------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccC
Confidence 4443 57999999999999999987211 2355677888888999877654332
Q ss_pred ---CCCceEEEEEEec
Q 015704 386 ---PHASYRILTADKR 398 (402)
Q Consensus 386 ---~~~~~~~l~~~k~ 398 (402)
....|.++.++|+
T Consensus 187 ~g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 187 KGGAGNVEFLVHLLKD 202 (232)
T ss_dssp CBTTTBCCEEEEEEES
T ss_pred CCCCCCHHHHHHHhhc
Confidence 2234777777773
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-11 Score=106.42 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=74.9
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
..++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+.. ..+...|... +.+++||+|+++..
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~v~~~~~d~~~--~~~~~fD~i~~~~~ 134 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAE-ENAALNGIYDIALQKTSLLA--DVDGKFDLIVANIL 134 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCCCEEEESSTTT--TCCSCEEEEEEESC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEeccccc--cCCCCceEEEECCc
Confidence 346789999999999999888765 6899999988776665 334444544 4566666544 34689999998765
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..+ ...+++++.++|+|||.+++++.
T Consensus 135 ~~~----~~~~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 135 AEI----LLDLIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp HHH----HHHHGGGSGGGEEEEEEEEEEEE
T ss_pred HHH----HHHHHHHHHHhcCCCCEEEEEec
Confidence 332 47889999999999999999853
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-11 Score=113.15 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=74.6
Q ss_pred CcceEEeccccc---hHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCC----------CCC
Q 015704 254 KLRNVLDMRAGF---GGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPF----------DTY 315 (402)
Q Consensus 254 ~~~~vLD~g~g~---G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~----------~~~ 315 (402)
.++.|||+|||+ |.++..+...... ..|+.+| ++.|++.+.++- -+..+..-.... ..+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~---~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPD---ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTT---CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCC---CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC
Confidence 567899999999 9887766654211 2677777 577888776652 233333222111 125
Q ss_pred C-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 316 P-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 316 ~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
| .+||+|.+..+|+|+++. ++..+|.|+.|+|||||++++++..
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence 5 699999999999999875 7899999999999999999999743
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=110.12 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=92.5
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
.-.+|||+|||+|.++..++++... ..++.+|.+.+++.+.++ |+ +..+...... .++|..||+|+|.+
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~D~v~~~~ 240 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPN---AEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE-VDYGNDYDLVLLPN 240 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTT---CEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTT-SCCCSCEEEEEEES
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCC---CeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccccc-CCCCCCCcEEEEcc
Confidence 4457999999999999999987321 255666633666665554 33 3333322222 24565699999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeChh---------------------------hHHHHHHHHHhcCceEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID---------------------------VMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~---------------------------~~~~~~~~~~~~~w~~~~ 379 (402)
+++|+.+. +...+|.++.|+|||||++++.|... ..+.++.++++-.++...
T Consensus 241 ~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~ 319 (335)
T 2r3s_A 241 FLHHFDVA-TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ 319 (335)
T ss_dssp CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred hhccCCHH-HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence 99998642 45799999999999999999986320 145667778888887666
Q ss_pred eecCCCCCCceEEEEEEec
Q 015704 380 RETAEGPHASYRILTADKR 398 (402)
Q Consensus 380 ~~~~~~~~~~~~~l~~~k~ 398 (402)
..... ++..+++++++
T Consensus 320 ~~~~~---~~~~~i~~~~~ 335 (335)
T 2r3s_A 320 LHSLP---TTQQQVIVAYK 335 (335)
T ss_dssp EECCT---TSSSEEEEEEC
T ss_pred EEECC---CCceeEEEecC
Confidence 54432 23456666653
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.13 E-value=7.3e-11 Score=106.34 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=75.3
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHH----HcCC-CcEEEeccccCCCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL----ERGA-PAMVAAFATRRLPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~----~~~~-~~~~~~~d~~~lp~~~~sfDlI~ 79 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++.... +.++ ..+. ...+...|+..+|+++++ |.|+
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~-~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKIS-AKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH 103 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHH-HHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence 35679999999999999888764 7999999998886433 2222 2333 345777888899988777 7776
Q ss_pred ecCcc--c--ccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCR--I--NWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~--~--~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..... . |+..++..+++++.++|||||.++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 43211 1 234466899999999999999999974
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=111.85 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=76.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++ ++..+. +..+..+. ...+...|+..+++++++||+|+++.+
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHH-HHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 35679999999999999888765 699999996 665544 44444554 345677788888888889999998753
Q ss_pred c--cccccChHHHHHHHHHhcCCCeEEEE
Q 015704 84 R--INWTRDDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 84 ~--~~~~~d~~~~l~e~~r~LkpgG~li~ 110 (402)
. ++...+...++.++.++|||||.++.
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 2 22233467899999999999999983
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=113.86 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=78.0
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .|+++|++ .++..+. +.....+.. ..+...|++.++++ ++||+|+|..+
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~ 138 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWM 138 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcCh
Confidence 35679999999999999888875 78999999 7776554 555555554 45777888888877 89999998653
Q ss_pred ccccc--cChHHHHHHHHHhcCCCeEEEEE
Q 015704 84 RINWT--RDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 84 ~~~~~--~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.+... .++..++.++.++|||||.++++
T Consensus 139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 139 GYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp BTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 23222 34678999999999999999886
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=103.19 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=82.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-CC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~~-~sfD~v~~~~ 326 (402)
..|||+|||+|.++..|++...+ .+|+++| ++.+++.+.++ |+ +..++.....++. ++ ++||+|++..
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPD---INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT---SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CeEEEEccCcCHHHHHHHHHCCC---CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 35999999999999999987421 2566666 45666655543 43 3444433333332 55 7999999985
Q ss_pred cccccc-----ccCCHHHHHHHhhhhccCCcEEEEEe-ChhhHHHHHHHHHhcCceEEEee
Q 015704 327 LFSVES-----KRCNMSTIMLEMDRMLRPGGHVYIRD-SIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 327 ~~~~~~-----~~~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
...+.. .+-....+|.++.|+|||||.+++.. .....+.+.+.+..-.|+.....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence 432211 11123689999999999999999985 43455667777777778776544
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=119.49 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=80.7
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHH-----cCCC-cEEEeccccCCCCCCCCeeEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALE-----RGAP-AMVAAFATRRLPYPSQAFDLI 78 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~-----~~~~-~~~~~~d~~~lp~~~~sfDlI 78 (402)
++.+|||+|||+|.++..+++. .|+|+|+++.++..+..+.... .+.. ..+..+|+..+++++++||+|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 5679999999999999999865 5899999998886665433322 1222 457788999999988999999
Q ss_pred EecCcccccccCh-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|+.+++|+.+.. ..+++++.++|||| .++++++
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 9998877776322 46899999999999 8888864
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-10 Score=110.20 Aligned_cols=135 Identities=14% Similarity=0.160 Sum_probs=92.6
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccccCCCCCCC-CCCcccEEEEcc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDT-YPRTYDLLHAAG 326 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~~~~~~~~~-~~~sfD~v~~~~ 326 (402)
..+|||+|||+|.++..|+++...+. ++..|.+.+++.+.++ ++ +..+.......++ +|..||+|++++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLT---GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCE---EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCe---EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence 66899999999999999998743333 3333334455554433 43 2233221222122 457899999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh---------------------------hhHHHHHHHHHhcCceEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------------------DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~---------------------------~~~~~~~~~~~~~~w~~~~ 379 (402)
+++|+.+. +...+|.++.|+|||||++++.|.. ...+.++.++++-.+++..
T Consensus 257 vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 257 CLHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp CGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceee
Confidence 99998753 3579999999999999999998621 1134567778888888776
Q ss_pred eecCCCCCCceEEEEEEec
Q 015704 380 RETAEGPHASYRILTADKR 398 (402)
Q Consensus 380 ~~~~~~~~~~~~~l~~~k~ 398 (402)
... ++..+++++|+
T Consensus 336 ~~~-----g~~~l~~a~kp 349 (352)
T 3mcz_A 336 RSI-----GRYTLLIGQRS 349 (352)
T ss_dssp EEE-----TTEEEEEEECC
T ss_pred ecc-----CceEEEEEecC
Confidence 332 46788999986
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-10 Score=99.27 Aligned_cols=109 Identities=14% Similarity=0.202 Sum_probs=79.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|++.+. +|+.+| ++.+++.+.++ |+ +..++...+. ++| ++||+|++..+
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCK-----FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED--VLDKLEFNKAFIGGT 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSS-----EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH--HGGGCCCSEEEECSC
T ss_pred CEEEEeCCCCCHHHHHHHhcCC-----eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc--cccCCCCcEEEECCc
Confidence 3699999999999999998655 566665 45566655554 33 2333321111 355 69999999977
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeC-hhhHHHHHHHHHhcCceEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-~~~~~~~~~~~~~~~w~~~~~ 380 (402)
.++..+|.++.|+ |||.+++.+. .+....+.+.+++..|++...
T Consensus 110 -------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 -------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp -------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 3568999999999 9999999984 455667788888888988765
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.7e-10 Score=98.06 Aligned_cols=125 Identities=12% Similarity=0.099 Sum_probs=86.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEcccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKR 334 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~ 334 (402)
+|||+|||+|.++..|++++ .|+++| ++.+++. ... +..+....+ .+++ ++||+|+|+..+.+..+.
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~------~v~gvD~s~~~~~~--~~~-~~~~~~d~~--~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN------TVVSTDLNIRALES--HRG-GNLVRADLL--CSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS------EEEEEESCHHHHHT--CSS-SCEEECSTT--TTBCGGGCSEEEECCCCBTTCCC
T ss_pred eEEEeccCccHHHHHHHhcC------cEEEEECCHHHHhc--ccC-CeEEECChh--hhcccCCCCEEEECCCCccCCcc
Confidence 69999999999999999986 555655 4455555 222 333332222 2455 899999999887765432
Q ss_pred ------CCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEE
Q 015704 335 ------CNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTA 395 (402)
Q Consensus 335 ------~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~ 395 (402)
.+...++.++.|.| |||.+++.... ...+.+.+.+++..|+.......... .+++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~--~e~~~~~ 159 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL--GETVYII 159 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECS--SSEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccC--CceEEEE
Confidence 12357899999999 99999998643 55788888999999997765544332 3444443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=104.05 Aligned_cols=101 Identities=10% Similarity=0.009 Sum_probs=75.1
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccC-CCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRR-LPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~-lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..++.+ .|+++|+++.++..+. +.+...+. ...+...|+.. ++..+++||+|+++..
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~-~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLI-KNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 4679999999999998876544 6899999998886665 44444454 34466667555 4666679999998765
Q ss_pred cccccChHHHHHHHHH--hcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNR--MLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r--~LkpgG~li~~~~ 113 (402)
++. .+...+++++.+ +|+|||.+++++.
T Consensus 132 ~~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 132 FRR-GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp SST-TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCC-CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 342 356778888866 5999999999864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-11 Score=111.75 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=69.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c-ccccccCCCCC-CCCC-CcccEEEE-cc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L-IGVMHDWCEPF-DTYP-RTYDLLHA-AG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~-~~~~~~~~~~~-~~~~-~sfD~v~~-~~ 326 (402)
.+|||+|||+|.++..|++.+. ..|+.+| ++.+++.+.++. . +..++...+.+ .+++ ++||+|++ ..
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPI----DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE----EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CeEEEEeccCCHHHHHHHhcCC----CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4699999999999999987642 2677777 677888777653 2 33333222222 2567 79999999 44
Q ss_pred ccccccc--cCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESK--RCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~--~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+ +..+ ..+.+.+|.|+.|+|||||++++.+
T Consensus 138 ~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 138 PL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 43 3222 2234578999999999999999875
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=99.45 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=70.8
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sf 75 (402)
.++.+|||+|||+|.++..+++ ..++++|+++ +... ....+...|....+ +++++|
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 4667999999999988877754 3789999998 5521 23445666776666 677899
Q ss_pred eEEEecCcccccccCh-----------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 76 DLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~-----------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+|+++.. .++..+. ..+++++.++|+|||.++++++
T Consensus 90 D~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 90 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp EEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCC-ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99998765 4443343 6889999999999999999864
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-11 Score=108.06 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=77.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccc-cCCCCCCCCC--CcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMH-DWCEPFDTYP--RTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~-~~~~~~~~~~--~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..|++.+. .|+++| ++.+++.+.++.. +..++ +..+.++ ++ ++||+|+|.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~~~fD~v~~~----- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA-----RWAAYDFSPELLKLARANAPHADVYEWNGKGELP-AGLGAPFGLIVSR----- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCC-TTCCCCEEEEEEE-----
T ss_pred CeEEEeCCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHhCCCceEEEcchhhccC-CcCCCCEEEEEeC-----
Confidence 4699999999999999999976 666776 5678888877732 33343 3323433 44 699999998
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEE
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~ 379 (402)
.++..+|.++.|+|||||+++..........+...+.+-.+....
T Consensus 119 ----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 119 ----RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp ----SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEEE
T ss_pred ----CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 145689999999999999999543333344566666666665443
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=105.16 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=89.4
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC---CCCcccEEEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT---YPRTYDLLHA 324 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~---~~~sfD~v~~ 324 (402)
-.+|||+|||+|.++..|+....+ ..|+.+| ++.++..+.+. |+ +..++...+.++. ++++||+|+|
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPE---LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 356999999999999998876211 2566666 45666555443 54 5556655555443 2379999999
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeC---hhhHHHHHHHHHhcCceEEEeecCCCC--CCceEEEEEEec
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS---IDVMDELQEIGKAMGWHVTLRETAEGP--HASYRILTADKR 398 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~---~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~l~~~k~ 398 (402)
..+ .++..++.++.|+|||||++++-.. .+....++..++.+.|+......-.-+ .+.-.+++.+|.
T Consensus 158 ~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~ 229 (249)
T 3g89_A 158 RAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKT 229 (249)
T ss_dssp ESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred CCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeC
Confidence 743 3467999999999999999998653 455666777788888887654332222 123344555553
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.6e-11 Score=122.92 Aligned_cols=101 Identities=10% Similarity=0.126 Sum_probs=75.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----------Cc--ccccccCCCCCCCCCCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----------GL--IGVMHDWCEPFDTYPRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----------g~--~~~~~~~~~~~~~~~~sfD~v 322 (402)
.+|||+|||+|.++..|++.+. ....|+++| ++.+++.|.+| |+ +..++.-.+.++..+++||+|
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~--p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPT--SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCC--CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred CEEEEECCCCCHHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence 4699999999999999999871 112667777 56788777652 33 444554444544323899999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+|..+|+|+.+. ....++.|+.|+|||| .++++.++
T Consensus 801 V~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 801 TCLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEecC
Confidence 999999999863 2346899999999999 88888755
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=101.68 Aligned_cols=96 Identities=15% Similarity=0.040 Sum_probs=73.2
Q ss_pred CCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..++. ..++++|+++.++..+. +.+...+.. ..+...|....+ +.++||+|+++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLR-QVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc-
Confidence 367999999999998887764 27899999988776555 334444544 446666776665 4578999997532
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+...++.++.++|+|||.+++..
T Consensus 142 ----~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 ----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 356899999999999999999985
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.8e-10 Score=95.66 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=73.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+.. ..+...|... ++++++||+|+++.+
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~i~~~~~--- 109 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTK-QNLAKFNIKNCQIIKGRAED-VLDKLEFNKAFIGGT--- 109 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHH-HHHHHTTCCSEEEEESCHHH-HGGGCCCSEEEECSC---
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHH-HHHHHcCCCcEEEEECCccc-cccCCCCcEEEECCc---
Confidence 5679999999999999888765 7899999988776655 333344443 4456666555 666689999998765
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+...+++++.++ |||.+++.++
T Consensus 110 --~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 110 --KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp --SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred --ccHHHHHHHHhhC--CCCEEEEEec
Confidence 4678999999999 9999999963
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=107.80 Aligned_cols=134 Identities=13% Similarity=0.214 Sum_probs=91.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEc--
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAA-- 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~-- 325 (402)
.+|||+|||+|.++..|++... ..+|+++| ++.+++.+.++ |+ +..++.... .+++ ++||+|+|.
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~---~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~--~~~~~~~fD~Iv~npP 185 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERP---DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWF--SALAGQQFAMIVSNPP 185 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCT---TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTT--GGGTTCCEEEEEECCC
T ss_pred CEEEEecCCccHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchh--hhcccCCccEEEECCC
Confidence 4699999999999999996521 12677777 56677666554 43 333332111 2243 799999997
Q ss_pred -----------ccccccccc---------CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceE-EEeecCC
Q 015704 326 -----------GLFSVESKR---------CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHV-TLRETAE 384 (402)
Q Consensus 326 -----------~~~~~~~~~---------~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~ 384 (402)
.++.|.+.. ..+..++.++.|+|||||++++.......+.+++++++..|+. ....+.
T Consensus 186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~- 264 (276)
T 2b3t_A 186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY- 264 (276)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT-
T ss_pred CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecC-
Confidence 455554322 1346899999999999999999987777788888888877763 333332
Q ss_pred CCCCceEEEEEEe
Q 015704 385 GPHASYRILTADK 397 (402)
Q Consensus 385 ~~~~~~~~l~~~k 397 (402)
.+..++++++|
T Consensus 265 --~g~~r~~~~~~ 275 (276)
T 2b3t_A 265 --GDNERVTLGRY 275 (276)
T ss_dssp --TSSEEEEEEEC
T ss_pred --CCCCcEEEEEE
Confidence 24788888775
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=105.74 Aligned_cols=98 Identities=16% Similarity=0.019 Sum_probs=74.7
Q ss_pred CCCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCC---CCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYP---SQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~---~~sfDlI~s 80 (402)
.++.+|||+|||+|..+..++. ..|+++|+++.++..+. +.++..+.. ..+...++++++.. .++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVE-RAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 3567999999999988777664 27999999998876665 444455554 45667777776643 479999998
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
..+ .+...++..+.++|||||.+++..
T Consensus 158 ~a~-----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 158 RAV-----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp ESS-----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCc-----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 643 256889999999999999998874
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=104.98 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=72.5
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC---CCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR---LPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~---lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++... .+.++.+ ....+...|+.. +++.+++||+|++
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~-~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDL-INLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHH-HHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHH-HHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 35679999999999998887653 689999998765443 3555554 334566667655 4556789999998
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.. .......++.++.++|||||.++++..
T Consensus 154 ~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 154 DVA---QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CCC---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 643 221235568899999999999999853
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-10 Score=105.82 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=65.8
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CC------CChhhHHhc----Cc---ccccccC--CCCCCCCC-C
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GF------NTLPVIYDR----GL---IGVMHDW--CEPFDTYP-R 317 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~------~~~~~~~~r----g~---~~~~~~~--~~~~~~~~-~ 317 (402)
.+|||+|||+|.++..|+++ |.+. .|+.+| ++ .+++.+.++ |+ +..+... ...-.+|+ +
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~---~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSG---HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTC---EEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 46999999999999999987 3222 444444 23 377766554 32 3333321 11123456 7
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+||+|+|..+++|+.+ +..++..+.++++|||++++.+
T Consensus 122 ~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 122 HFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999999999875 3566666667777799999975
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=107.57 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+....+...+... ++++++||+|+++.. .+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~-~n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~-~~ 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLY-AE 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECC-HH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCcEEEEECChhh-cCcCCCCCEEEECCc-HH
Confidence 46789999999999998887765 7899999998887665 4444455444455555433 244678999998754 22
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....++.++.++|||||.++++.
T Consensus 196 ---~~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 196 ---LHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHcCCCCEEEEEe
Confidence 24689999999999999999985
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-11 Score=101.76 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=72.9
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-CC-C--CCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-LP-Y--PSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~-lp-~--~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+... +...+....+...|... ++ . ..++||+|+++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN-VRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH-HHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 5679999999999999888765 589999998877666533 33344445566666544 22 1 1348999999865
Q ss_pred ccccccChHHHHHHHH--HhcCCCeEEEEEeCC
Q 015704 84 RINWTRDDGILLLEVN--RMLRAGGYFAWAAQP 114 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~--r~LkpgG~li~~~~~ 114 (402)
++ .+....++.+. ++|+|||.+++++.+
T Consensus 120 ~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 120 YA---MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TT---SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred Cc---hhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 33 35566777777 999999999999753
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-10 Score=107.94 Aligned_cols=138 Identities=21% Similarity=0.322 Sum_probs=92.2
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccc-cCCCCCCCCCCcccEEEEc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~sfD~v~~~ 325 (402)
...+|||+|||+|.++..|++++.++.++.+ |.+.+++.+.++ |+ +..+. +.. .++|..||+|++.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~D~v~~~ 256 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVL---EMAGTVDTARSYLKDEGLSDRVDVVEGDFF---EPLPRKADAIILS 256 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---ECTTHHHHHHHHHHHTTCTTTEEEEECCTT---SCCSSCEEEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEe---cCHHHHHHHHHHHHhcCCCCceEEEeCCCC---CCCCCCccEEEEc
Confidence 4467999999999999999988644433333 324566555543 33 33332 222 2356569999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--------h------------------hHHHHHHHHHhcCceEEE
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------D------------------VMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--------~------------------~~~~~~~~~~~~~w~~~~ 379 (402)
++++|+.+. +...+|.++.|+|||||++++.|.. . ..+.++.++++-.|++..
T Consensus 257 ~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (360)
T 1tw3_A 257 FVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEE 335 (360)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred ccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEE
Confidence 999998752 2358999999999999999998644 0 134566777777888765
Q ss_pred eecCCCC--CCceEEEEEEec
Q 015704 380 RETAEGP--HASYRILTADKR 398 (402)
Q Consensus 380 ~~~~~~~--~~~~~~l~~~k~ 398 (402)
.....+. .....++.++|.
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 336 VRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEECSSSSCEEEEEEEEEC
T ss_pred EEeCCCCcccCccEEEEEEeC
Confidence 5443221 011568888874
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.6e-10 Score=108.71 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=75.5
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+..+|||+|||+|.++..+++. .++++|+ +.++..+. +...+.+. ...+...|.. .+++. +||+|++..+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAH-RRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH-HHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHH-HhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence 4579999999999999888753 5788898 76665554 33333443 2446666764 45554 8999999999
Q ss_pred ccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|.++ ...++++++++|+|||++++...
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 8888743 37899999999999999999864
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-10 Score=96.41 Aligned_cols=134 Identities=11% Similarity=0.106 Sum_probs=80.2
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCCC-------CC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDT-------YP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~-------~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..+++. |... .++.+|...+++. .. +..+....+..+. ++ ++||+|++..
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~---~~-~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~ 96 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKG---RIIACDLLPMDPI---VG-VDFLQGDFRDELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTC---EEEEEESSCCCCC---TT-EEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCC---eEEEEECcccccc---Cc-EEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence 36999999999999999887 3211 3333331113322 11 2222221222110 45 7999999998
Q ss_pred ccccccccC--C------HHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecC--CCCCCceEEEEE
Q 015704 327 LFSVESKRC--N------MSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETA--EGPHASYRILTA 395 (402)
Q Consensus 327 ~~~~~~~~~--~------~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~l~~ 395 (402)
++.+..+.. . ...+|.++.|+|||||.+++.... .....+...+.. .|+....... ......+.+++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 175 (180)
T 1ej0_A 97 APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVA 175 (180)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTTCCEEEEEE
T ss_pred CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCcccccCceEEEEE
Confidence 877654310 0 158999999999999999998643 223444444444 3665443222 224456889988
Q ss_pred Ee
Q 015704 396 DK 397 (402)
Q Consensus 396 ~k 397 (402)
++
T Consensus 176 ~~ 177 (180)
T 1ej0_A 176 TG 177 (180)
T ss_dssp EE
T ss_pred cc
Confidence 76
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=105.44 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=74.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----------Cc--ccccccCCCCCCC--CC-Ccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----------GL--IGVMHDWCEPFDT--YP-RTY 319 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----------g~--~~~~~~~~~~~~~--~~-~sf 319 (402)
..|||+|||+|.++..|++...+ .+|+++| ++.+++.|.++ ++ +..++.-.....+ |+ ++|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~---~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPD---TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTT---SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CeEEEEccCCcHHHHHHHHHCCC---CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 45999999999999999987422 2677777 56677655432 33 3344433333222 66 899
Q ss_pred cEEEEccccccc-----cccCCHHHHHHHhhhhccCCcEEEEE-eChhhHHHHHHHHHhc-CceEE
Q 015704 320 DLLHAAGLFSVE-----SKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAM-GWHVT 378 (402)
Q Consensus 320 D~v~~~~~~~~~-----~~~~~~~~~l~e~~RvLrpgG~~~~~-~~~~~~~~~~~~~~~~-~w~~~ 378 (402)
|.|++...-.+. ..+.....+|.++.|+|||||.|++. +.......+.+.+..- .|...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 999875322111 11111257999999999999999996 4444445555544443 35544
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-10 Score=105.22 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC---CCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP---YPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~-~~d~~~lp---~~~~sfDlI~s~~ 82 (402)
++.+|||+|||||.++..+++. .|+++|+++.|+..+. +........ ..++..++ ++..+||+|+|..
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~-----r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL-----RQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH-----HTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcccceecccCceecchhhCCCCCCCEEEEEe
Confidence 5679999999999999888765 6999999999986532 222122111 12222222 3445699999875
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
+++ +...+|.++.|+|||||.+++...|
T Consensus 160 sf~----sl~~vL~e~~rvLkpGG~lv~lvkP 187 (291)
T 3hp7_A 160 SFI----SLNLILPALAKILVDGGQVVALVKP 187 (291)
T ss_dssp SSS----CGGGTHHHHHHHSCTTCEEEEEECG
T ss_pred eHh----hHHHHHHHHHHHcCcCCEEEEEECc
Confidence 543 3478999999999999999998433
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-10 Score=109.93 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=74.4
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+..+|||+|||+|.++..+++. .++++|+ +..+..+.. ...+.+. ...+...|.. .+++. +||+|++..+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 277 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARE-LLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHV 277 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHH-HHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESC
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHH-hhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhh
Confidence 4679999999999999888764 6788998 766655543 3333343 2446666765 45555 8999999998
Q ss_pred ccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++|.++. ..+++++++.|+|||++++..
T Consensus 278 lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 278 LHDWDDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp GGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 77776332 379999999999999999975
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.7e-10 Score=111.08 Aligned_cols=102 Identities=11% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCC--CCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRL--PYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~l--p~~~~sfDlI~s 80 (402)
..+.+|||||||+|.++..++++ .++++|+ +.++..+. +.+.+.+. ...+...|+... |++ ++||+|++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~ 254 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMR-KQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM 254 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHH-HHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHH-HHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence 45679999999999999888763 6888998 66654443 33333333 234666776654 566 78999999
Q ss_pred cCcccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.++++|.++ ...++++++++|||||.+++...
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 9988888743 36889999999999999999754
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=101.74 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=72.6
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+. +.+...+.. ..+...|... ++..+++||+|+++..
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ-DNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHH-HHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 5679999999999998888764 6899999988776555 334444443 3455666544 3444567999998765
Q ss_pred ccccccChHHHHHHHH--HhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVN--RMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~--r~LkpgG~li~~~~ 113 (402)
+ +. ......++.+. ++|+|||.+++.+.
T Consensus 110 ~-~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 110 Y-AK-ETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp S-HH-HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred C-Cc-chHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 3 22 24566777776 99999999999864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=108.36 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=72.1
Q ss_pred CCCeEEEECCccch----hHHHHcc--------CCceEEeCCccchHHHHHHHH-------------HH---------cC
Q 015704 10 LLRVVMDAGCGVAS----FGAYLLP--------RNVITMSIAPKDVHENQIQFA-------------LE---------RG 55 (402)
Q Consensus 10 ~~~~VLDiGcG~G~----~~~~L~~--------~~v~~vdi~~~~~~~a~~~~a-------------~~---------~~ 55 (402)
++.+|||+|||||. ++..|++ ..|+|+|+++.++..+....- .+ .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 34699999999997 4444432 268999999887766553210 00 00
Q ss_pred ---------CCcEEEeccccCCCCC-CCCeeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 56 ---------APAMVAAFATRRLPYP-SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 56 ---------~~~~~~~~d~~~lp~~-~~sfDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....+...|+...|++ .++||+|+|.++++++.++ ..++++++++.|+|||+|++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 0234566676666665 5789999999887777532 2689999999999999999973
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-10 Score=106.31 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=73.7
Q ss_pred CCCeEEEECCcc---chhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-----------CC
Q 015704 10 LLRVVMDAGCGV---ASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-----------YP 71 (402)
Q Consensus 10 ~~~~VLDiGcG~---G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp-----------~~ 71 (402)
...+|||||||+ |.++..+.+ .+|+++|+++.++..++... . ......+...|+...+ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~-~-~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALL-A-KDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHH-T-TCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhc-C-CCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 347999999999 987665542 37999999988876554332 1 1223456666764421 33
Q ss_pred CCCeeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 72 SQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 72 ~~sfDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.++||+|+++.+++|+.++ +..++++++++|+|||+|+++..
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 3589999998876666542 78999999999999999999964
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=107.51 Aligned_cols=115 Identities=21% Similarity=0.232 Sum_probs=83.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..+++.|+ .|+++| ++.+++.+.++ |+ +..++..... .+| .+||+|+|+.+.
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~-----~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~--~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG-----KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA--ALPFGPFDLLVANLYA 194 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH--HGGGCCEEEEEEECCH
T ss_pred CEEEEecCCCcHHHHHHHHhCC-----eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh--cCcCCCCCEEEECCcH
Confidence 4699999999999999999986 566666 46666666553 43 2333221111 145 799999997544
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeC-hhhHHHHHHHHHhcCceEEEeecC
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
++ +..++.++.|+|||||++++++. ....+.+...+++..+++......
T Consensus 195 ~~------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~ 244 (254)
T 2nxc_A 195 EL------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp HH------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred HH------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc
Confidence 43 46899999999999999999863 345778888888888988766553
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.07 E-value=4e-10 Score=104.53 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=85.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCC-CCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFD-TYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~-~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|++++. . .|+++| ++.+++.+.++ |+ +..++.-...++ .++ ++||+|+|.
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~--~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n 126 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTK--A--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCC--C--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred CEEEEcCCchhHHHHHHHHhcC--C--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence 4699999999999999999864 1 677777 45666655443 43 334443333333 255 899999996
Q ss_pred cccccc-----cc------------cCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEe
Q 015704 326 GLFSVE-----SK------------RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 326 ~~~~~~-----~~------------~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 380 (402)
-.+.+. .+ .+++..++.++.|+|||||++++.-+.+....+...+++..|.....
T Consensus 127 pPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 198 (259)
T 3lpm_A 127 PPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRI 198 (259)
T ss_dssp CCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEE
T ss_pred CCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEE
Confidence 544322 10 13456899999999999999999887777888888888888886543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=7e-10 Score=102.30 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=75.2
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+........+. ...+...|....++++++||+|+++.
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 174 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDL 174 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECC
Confidence 35679999999999988777643 6899999988776665333332033 34466677777778888999999742
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++..+++++.++|+|||.+++..+
T Consensus 175 ------~~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 175 ------MEPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp ------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 2667899999999999999999964
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=112.81 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=72.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..+++.|+ ..|+++|.+.+++.+.++ |+ +..++...+.+ ++| ++||+|+|..+
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~----~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGA----RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWM 142 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTC----SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCC
T ss_pred CEEEEEeccchHHHHHHHHCCC----CEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccc
Confidence 4599999999999999999864 245555532466555443 44 45555555554 477 89999999877
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
..++.....+..+|.++.|+|||||+++..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 666665667899999999999999999755
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.6e-11 Score=114.45 Aligned_cols=102 Identities=11% Similarity=-0.024 Sum_probs=76.4
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHH------HHHcCC---CcEEEeccccCCCCCC--C
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQF------ALERGA---PAMVAAFATRRLPYPS--Q 73 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~------a~~~~~---~~~~~~~d~~~lp~~~--~ 73 (402)
.++.+|||||||+|.++..++.. .++|+|+++.++..+.... ++..+. ...+..+|+..+|+++ .
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~ 251 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 251 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccC
Confidence 46779999999999988877642 4999999987765554321 223343 3457788888888754 4
Q ss_pred CeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 74 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 74 sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+||+|+++.. ++ .++....|.+++++|||||.|+++.
T Consensus 252 ~aDVVf~Nn~-~F-~pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 252 NTSVIFVNNF-AF-GPEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp TCSEEEECCT-TC-CHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred CccEEEEccc-cc-CchHHHHHHHHHHcCCCCcEEEEee
Confidence 7999998765 33 4577889999999999999999874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.1e-11 Score=102.72 Aligned_cols=111 Identities=18% Similarity=0.284 Sum_probs=77.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC--CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP--RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~--~sfD~v~~~ 325 (402)
.+|||+|||+|.++..+++.+. .|+.+| ++.+++.+.++ |+ +..++..... +++ .+||+|++.
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~v~~~ 107 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRVR-----RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--ALCKIPDIDIAVVG 107 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTSS-----EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--HHTTSCCEEEEEES
T ss_pred CEEEEECCCCCHHHHHHHHhcC-----EEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--hcccCCCCCEEEEC
Confidence 3699999999999999999864 566666 45566555542 32 2222211111 123 589999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEE
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~ 379 (402)
.+++| +..+|.++.|+|||||.+++.+.. .....+...+++..|++..
T Consensus 108 ~~~~~------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 108 GSGGE------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp CCTTC------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred CchHH------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEE
Confidence 77754 468999999999999999998754 4566777777777775443
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.5e-10 Score=106.90 Aligned_cols=99 Identities=13% Similarity=0.090 Sum_probs=75.0
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc-CCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-GAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~-~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.+|||+|||+|.++..+++. .++++|+ +.++..+........ .....+...|... +++ ++||+|++..++++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~ 245 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD 245 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence 79999999999998888753 6899999 888866654333221 1234566667655 555 67999999998888
Q ss_pred cccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|.++ ...++++++++|+|||.+++...
T Consensus 246 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 246 LDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp CCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 8633 24899999999999999999864
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.1e-11 Score=104.74 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=78.8
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccc-cCCCCCCC---CCCcccEEEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMH-DWCEPFDT---YPRTYDLLHA 324 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~-~~~~~~~~---~~~sfD~v~~ 324 (402)
-.+|||+|||+|.++..+++.+.. .+++++| ++.+++.+.++ |+ +..++ +..+.++. .+++||+|+|
T Consensus 31 ~~~vLDiG~G~G~~~~~l~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 31 GTRVIDVGTGSGCIAVSIALACPG---VSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp TEEEEEEESSBCHHHHHHHHHCTT---EEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCEEEEecCCHhHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 356999999999999999998421 2455555 45555555443 21 11221 11111111 1279999999
Q ss_pred cccc------ccccccCC-----------------HHHHHHHhhhhccCCcE-EEEEeChhhHHHHHHHHH--hcCceEE
Q 015704 325 AGLF------SVESKRCN-----------------MSTIMLEMDRMLRPGGH-VYIRDSIDVMDELQEIGK--AMGWHVT 378 (402)
Q Consensus 325 ~~~~------~~~~~~~~-----------------~~~~l~e~~RvLrpgG~-~~~~~~~~~~~~~~~~~~--~~~w~~~ 378 (402)
...+ .|+..... ...++.++.|+|||||+ +++.-+......+..++. +-.|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 5433 22221100 16889999999999999 777766666778888887 6667543
Q ss_pred EeecCCCCCCceEEEEEEec
Q 015704 379 LRETAEGPHASYRILTADKR 398 (402)
Q Consensus 379 ~~~~~~~~~~~~~~l~~~k~ 398 (402)
....+. .+..++++++|.
T Consensus 188 ~~~~~~--~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVKDL--RGIDRVIAVTRE 205 (215)
T ss_dssp CEEECT--TSCEEEEEEEEC
T ss_pred EEEEec--CCCEEEEEEEEc
Confidence 332222 246888888874
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.06 E-value=3.7e-10 Score=103.94 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=72.1
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc-------CCC-cEEEeccccC-CC--CCCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-------GAP-AMVAAFATRR-LP--YPSQA 74 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~-------~~~-~~~~~~d~~~-lp--~~~~s 74 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+........ +.. ..+...|+.. ++ ++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 5678999999999999888753 59999999987766553322210 333 3466667654 66 77889
Q ss_pred eeEEEecCcccccccC--------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 75 FDLIHCSRCRINWTRD--------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d--------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|.|+.... -.|... ...++.++.++|+|||.+++.+
T Consensus 129 ~d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 129 LSKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 999985432 111100 0489999999999999999986
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=100.97 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=80.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC--cccccccCCCCCCC--CC-CcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG--LIGVMHDWCEPFDT--YP-RTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg--~~~~~~~~~~~~~~--~~-~sfD~v~~~~~~~ 329 (402)
..|||+|||... +| ++.|++.+.++. .+.......+.++. ++ ++||+|+|..+++
T Consensus 14 ~~vL~~~~g~v~-------------------vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~ 74 (176)
T 2ld4_A 14 QFVAVVWDKSSP-------------------VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPG 74 (176)
T ss_dssp SEEEEEECTTSC-------------------HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTT
T ss_pred CEEEEecCCcee-------------------eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhh
Confidence 359999998621 33 456777666653 12222222233333 46 8999999999999
Q ss_pred cc-cccCCHHHHHHHhhhhccCCcEEEEEeChh----------hHHHHHHHHHhcCceEEEeecCCCCC-----------
Q 015704 330 VE-SKRCNMSTIMLEMDRMLRPGGHVYIRDSID----------VMDELQEIGKAMGWHVTLRETAEGPH----------- 387 (402)
Q Consensus 330 ~~-~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~----------- 387 (402)
|+ .+ +..+|.|+.|+|||||++++.++.. ..+.+...+++-.+ +...+....+.
T Consensus 75 ~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~~~~ 150 (176)
T 2ld4_A 75 STTLH---SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSVREH 150 (176)
T ss_dssp CCCCC---CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHHHHH
T ss_pred hcccC---HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHHHHH
Confidence 98 54 4899999999999999999986531 15667777776666 55433211011
Q ss_pred -------CceEEEEEEecCCC
Q 015704 388 -------ASYRILTADKRLLH 401 (402)
Q Consensus 388 -------~~~~~l~~~k~~~~ 401 (402)
....+++++|+-|.
T Consensus 151 ~g~~~~~~~~~~~~a~Kp~~~ 171 (176)
T 2ld4_A 151 LGHESDNLLFVQITGKKPNFE 171 (176)
T ss_dssp TCCCCSSEEEEEEEEECCCSS
T ss_pred hcccCCceEEEEEeccCCccc
Confidence 12567889998763
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.4e-10 Score=110.62 Aligned_cols=139 Identities=24% Similarity=0.313 Sum_probs=91.0
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccc-cCCCCCCCCCCcccEEEE
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTYDLLHA 324 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~sfD~v~~ 324 (402)
....+|||+|||+|.++..|+++..++ .++.+|.+.+++.+.++ |+ +..+. +.. .++|..||+|++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDFF---KPLPVTADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---SCCSCCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCC---CcCCCCCCEEEE
Confidence 345679999999999999999885322 33333333455555442 43 33332 222 235656999999
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeC--h--h-----------------------hHHHHHHHHHhcCceE
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS--I--D-----------------------VMDELQEIGKAMGWHV 377 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~--~--~-----------------------~~~~~~~~~~~~~w~~ 377 (402)
.++++|+.+. ....+|.++.|+|||||++++.+. . + ..+.++.++++-.++.
T Consensus 255 ~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 333 (374)
T 1qzz_A 255 SFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL 333 (374)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred eccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 9999998753 235899999999999999999876 2 1 2445667778888886
Q ss_pred EEeecCCCCC--CceEEEEEEec
Q 015704 378 TLRETAEGPH--ASYRILTADKR 398 (402)
Q Consensus 378 ~~~~~~~~~~--~~~~~l~~~k~ 398 (402)
.......+.. ....++.++|.
T Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 334 ASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEEEEECCSSCSSCEEEEEEEEC
T ss_pred EEEEECCCCcccCCcEEEEEEEC
Confidence 6544432211 11277888774
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.2e-10 Score=108.81 Aligned_cols=136 Identities=14% Similarity=0.205 Sum_probs=89.4
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~ 325 (402)
....+|||+|||+|.++..|+++..+. .++.+|.+.+++.+.++ |+ +..+....... ++| .+|+|++.
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~-~~D~v~~~ 263 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE-SYP-EADAVLFC 263 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTC---EEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS-CCC-CCSEEEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC-CCC-CCCEEEEe
Confidence 345679999999999999999884322 33333334566655543 43 33333222221 344 34999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------------------hhHHHHHHHHHhcCceE
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------------------DVMDELQEIGKAMGWHV 377 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------------------~~~~~~~~~~~~~~w~~ 377 (402)
++++|+.+. +...+|.++.|+|||||++++.|.. ...+.+++++++-.++.
T Consensus 264 ~vlh~~~d~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~ 342 (359)
T 1x19_A 264 RILYSANEQ-LSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKD 342 (359)
T ss_dssp SCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEE
T ss_pred chhccCCHH-HHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCce
Confidence 999998752 3579999999999999999888611 12345566666667776
Q ss_pred EEeecCCCCCCceEEEEEEec
Q 015704 378 TLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 378 ~~~~~~~~~~~~~~~l~~~k~ 398 (402)
....... ...++.++|+
T Consensus 343 v~~~~~~----~~~vi~a~kp 359 (359)
T 1x19_A 343 VTMVRKY----DHLLVQAVKP 359 (359)
T ss_dssp EEEEEET----TEEEEEEECC
T ss_pred EEEEecC----CceEEEEeCC
Confidence 5544321 4667778774
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-10 Score=97.38 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCC-CCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPS-QAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~-~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++++|+++..+..+. +.....+. ...+...|... +++. ++||+|+++..
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 109 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTE-MNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGS 109 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHH-HHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCc
Confidence 35679999999999999888876 7899999987776555 33333444 33455556444 2333 58999998755
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.. +...+++++.++|+|||.+++...
T Consensus 110 ~~----~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 110 GG----ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp TT----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hH----HHHHHHHHHHHhcCCCcEEEEEec
Confidence 32 468899999999999999999863
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.05 E-value=5e-10 Score=108.49 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=75.3
Q ss_pred CCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCC-CCCCCeeEEEecCc
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLP-YPSQAFDLIHCSRC 83 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp-~~~~sfDlI~s~~~ 83 (402)
+.+|||+|||+|.++..+++. .++++|+ +.++..+. +...+.+.. ..+...|....+ +.+++||+|+++.+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAAR-KTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHH-HHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHH-HHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 679999999999999888754 6888999 66665554 333344432 346666766654 23467999999998
Q ss_pred ccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++|.++ ...++++++++|+|||.+++..
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8887632 3789999999999999999975
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-10 Score=100.87 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=72.8
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCC----CCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRL----PYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~l----p~~~~sfDlI~s 80 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+. ...+...|.... ++++++||+|++
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKE-NIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 5679999999999998877654 68999999988766653 3333443 234566665442 223678999998
Q ss_pred cCcccccccChHHHHHHH--HHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEV--NRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~--~r~LkpgG~li~~~~ 113 (402)
+.. ++ ..+....+..+ .++|+|||.+++.+.
T Consensus 123 ~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 123 DPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp CCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 866 33 23566777777 899999999999864
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=103.75 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=68.7
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.++.. ....+...|... ++++ ++||+|++.
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~-~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~ 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAER-ENIIPILGDANKPQEYANIV-EKVDVIYED 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHH-HHhhcC-CCeEEEECCCCCcccccccC-ccEEEEEEe
Confidence 5679999999999998877653 6899999987765443 223222 234455667666 6666 789999932
Q ss_pred CcccccccCh---HHHHHHHHHhcCCCeEEEEE
Q 015704 82 RCRINWTRDD---GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 82 ~~~~~~~~d~---~~~l~e~~r~LkpgG~li~~ 111 (402)
. .++ ..+++++.++|||||.++++
T Consensus 151 -----~-~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 -----V-AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -----C-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----c-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 244 67899999999999999996
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-10 Score=99.19 Aligned_cols=138 Identities=11% Similarity=0.124 Sum_probs=75.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCC----------------------
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFD---------------------- 313 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~---------------------- 313 (402)
.+|||+|||+|.++..|+++..+ ....|+++|.+.+.. ..++ ..++...+...
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~-~~~~v~gvD~s~~~~---~~~v-~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 98 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKN-YKNKIIGIDKKIMDP---IPNV-YFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKL 98 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTT-SCEEEEEEESSCCCC---CTTC-EEEECCTTTTSSCCC-----------CHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCC-CCceEEEEeCCccCC---CCCc-eEEEccccchhhhhhccccccccccchhhHHHH
Confidence 46999999999999999987310 011333433211111 0121 12221112211
Q ss_pred --CCC-CcccEEEEcccccccccc-CC-------HHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEee
Q 015704 314 --TYP-RTYDLLHAAGLFSVESKR-CN-------MSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 314 --~~~-~sfD~v~~~~~~~~~~~~-~~-------~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~ 381 (402)
.++ ++||+|+|...+.+.... .+ ...+|.++.|+|||||.+++.... .....+...++..-.++...+
T Consensus 99 ~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f~~v~~~~ 178 (201)
T 2plw_A 99 KEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTK 178 (201)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTEEEEEECC
T ss_pred HhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHHheEEEEC
Confidence 045 699999998766553110 01 124899999999999999997432 223444445554322333333
Q ss_pred cCCC-CCCceEEEEEEec
Q 015704 382 TAEG-PHASYRILTADKR 398 (402)
Q Consensus 382 ~~~~-~~~~~~~l~~~k~ 398 (402)
...+ +...|.+++|++.
T Consensus 179 ~~~~r~~s~e~y~v~~~~ 196 (201)
T 2plw_A 179 PKASRNESREIYLVCKNF 196 (201)
T ss_dssp CC-----CCEEEEEEEEE
T ss_pred CcccCCcCceEEEEEecC
Confidence 2222 3456899999873
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-10 Score=107.03 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=75.7
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .|+++|++ .++..+. +.....+.. ..+...|+..+++++++||+|+|..+.
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHH-HHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 5679999999999998888765 69999999 4654443 444455543 456777888888888899999987542
Q ss_pred cc--cccChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 IN--WTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~--~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.. ....+..++.++.++|||||.++..
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 32 2334678999999999999999743
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=102.11 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=77.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhH----H----hcCc--ccccccCCCCCCCCC-CcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVI----Y----DRGL--IGVMHDWCEPFDTYP-RTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~----~----~rg~--~~~~~~~~~~~~~~~-~sfD~v~ 323 (402)
..|||+|||+|.++..|++++. ...|+++| ++.+++.+ . .+++ +..++...+.++ ++ ++ |.|+
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p---~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~-d~v~ 103 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNP---SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGV-GELH 103 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCT---TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCCCE-EEEE
T ss_pred CEEEEecCCCCHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCCCC-CEEE
Confidence 4599999999999999999831 12666766 56666642 1 2343 344444445543 55 55 7766
Q ss_pred Ec---cccc--cccccCCHHHHHHHhhhhccCCcEEEEEeC-------------------hhhHHHHHHHHHhcCceEEE
Q 015704 324 AA---GLFS--VESKRCNMSTIMLEMDRMLRPGGHVYIRDS-------------------IDVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 324 ~~---~~~~--~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-------------------~~~~~~~~~~~~~~~w~~~~ 379 (402)
.. ..+. |+.+ +..+|.|+.|+|||||.++++.. .+..+.++..+.+-.|++..
T Consensus 104 ~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGS---SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EESCCHHHHHHHHTS---SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEccchhhhhhhhcc---HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 32 2221 4443 47999999999999999999731 12244577888888998765
Q ss_pred ee
Q 015704 380 RE 381 (402)
Q Consensus 380 ~~ 381 (402)
..
T Consensus 181 ~~ 182 (218)
T 3mq2_A 181 CR 182 (218)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-11 Score=113.24 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=76.4
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+...+. ...+...|+..++ ++++||+|+++.+++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALAR-NNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 5679999999999999988876 7999999998876665 44444554 3456777776666 567999999987644
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+ ..+....+.++.++|+|||.+++.
T Consensus 156 ~-~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 G-PDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp S-GGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred C-cchhhhHHHHHHhhcCCcceeHHH
Confidence 4 445555788899999999997665
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.3e-10 Score=103.76 Aligned_cols=97 Identities=11% Similarity=0.149 Sum_probs=73.0
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHc-CCC-cEEEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER-GAP-AMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~-~~~-~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
.++.+|||+|||+|.++..+++. .++++|+++..+..+. +.+... +.. ..+...|... ++++++||+|++.
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~ 186 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM-DNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD 186 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHH-HHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc
Confidence 35679999999999988877643 6899999987775554 333333 433 4466667655 6667899999973
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+++..+++++.++|||||.++++++
T Consensus 187 ------~~~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 187 ------IPDPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp ------CSCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ------CcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 23667899999999999999999974
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-10 Score=102.50 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=69.9
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..++.. .++++|+++.++..+. +.....+ ...+...|......++++||+|+++.++.+
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~-~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYAS-KLLSYYN-NIKLILGDGTLGYEEEKPYDRVVVWATAPT 146 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHH-HHHTTCS-SEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHH-HHHhhcC-CeEEEECCcccccccCCCccEEEECCcHHH
Confidence 35679999999999999888764 7899999987665444 2222222 445666666553224578999999877665
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+. .++.++|+|||.+++...
T Consensus 147 ~~-------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 147 LL-------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CC-------HHHHHTEEEEEEEEEEEC
T ss_pred HH-------HHHHHHcCCCcEEEEEEc
Confidence 54 368999999999999964
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-10 Score=101.04 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=80.2
Q ss_pred ceEEeccccchHHHHHHhhc-C-CCceEEEeccCC-CCCChhhHHhcC----cccccccCCCC---CCCCCCcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-K-FDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEP---FDTYPRTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~-~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~---~~~~~~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|++. | . .|+++| ++.+++.+.++. -+..+..-.+. ..+++.+||+|++.
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~-----~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKG-----IVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTS-----EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred CEEEEEcccCCHHHHHHHHHcCCc-----EEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe
Confidence 46999999999999999987 3 3 455555 455665554432 12222222222 02234799999832
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEE----eChh-------hHHHHHHHHHhcCceEEEeecCCCCCCceEEEE
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR----DSID-------VMDELQEIGKAMGWHVTLRETAEGPHASYRILT 394 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~----~~~~-------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~ 394 (402)
+.+......+|.++.|+|||||++++. .... ..+.++ .+.+..++.........-.....+++
T Consensus 151 -----~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~ 224 (230)
T 1fbn_A 151 -----VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFV 224 (230)
T ss_dssp -----CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEE
T ss_pred -----cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEE
Confidence 232222367899999999999999995 1110 124555 66666777665544322223466778
Q ss_pred EEec
Q 015704 395 ADKR 398 (402)
Q Consensus 395 ~~k~ 398 (402)
++|+
T Consensus 225 ~~k~ 228 (230)
T 1fbn_A 225 GIWE 228 (230)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8774
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-10 Score=110.05 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=68.7
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccc-cCCCCCCCCCCcccEEEEcccccc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMH-DWCEPFDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~-~~~~~~~~~~~sfD~v~~~~~~~~ 330 (402)
......|||+|||+|.++..|+++..++.+ +..|.+.+++.+.++.-+..+. +.. .++|.. |+|+++++++|
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~v~~~~~d~~---~~~p~~-D~v~~~~vlh~ 273 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINA---INFDLPHVIQDAPAFSGVEHLGGDMF---DGVPKG-DAIFIKWICHD 273 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHHHHTTCCCCTTEEEEECCTT---TCCCCC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEE---EEEehHHHHHhhhhcCCCEEEecCCC---CCCCCC-CEEEEechhhc
Confidence 445678999999999999999987543332 3333233443333332233332 322 246644 99999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+.+. +...+|+++.|+|||||+++|.|
T Consensus 274 ~~~~-~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 274 WSDE-HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp BCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 8853 45689999999999999999986
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-10 Score=106.10 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=60.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-C-CCChhhH---Hh----cCc--ccccccCCCCCCC-CCCcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-G-FNTLPVI---YD----RGL--IGVMHDWCEPFDT-YPRTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~-~~~~~~~---~~----rg~--~~~~~~~~~~~~~-~~~sfD~v~ 323 (402)
..|||+|||+|.++..|+++.. ...|+++| + +.+++.| .+ .|+ +..+....+.++. +.+.+|.|+
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~---~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQ---NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCT---TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4599999999999999995532 23677777 4 5565554 33 243 3344444444432 114455555
Q ss_pred Eccccccc--cccCCHHHHHHHhhhhccCCcEEEE
Q 015704 324 AAGLFSVE--SKRCNMSTIMLEMDRMLRPGGHVYI 356 (402)
Q Consensus 324 ~~~~~~~~--~~~~~~~~~l~e~~RvLrpgG~~~~ 356 (402)
+...+.+. ..+.+...+|.|+.|+|||||++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 44222111 1112336799999999999999999
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-10 Score=110.53 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=72.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..+++.|+. .|+++|.+.+++.+.++ |+ +..++...+.++ +|++||+|+|..+.
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~~----~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGAR----KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDIS-LPEKVDVIISEWMG 139 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCS----EEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CSSCEEEEEECCCB
T ss_pred CEEEEeccCcCHHHHHHHhcCCC----EEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcC-cCCcceEEEEcChh
Confidence 46999999999999999998751 56666633677655443 43 445554444433 55899999996655
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.++.....+..++.++.|+|||||+++++.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 556555567899999999999999999874
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-10 Score=103.11 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=73.8
Q ss_pred ceEEeccccchHHHHHHhhc------CCCceEEEeccCC-CCCChhhHHhcC-cccccccCCCCC---CCCCC-cccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQ------KFDCWVMNVVPVS-GFNTLPVIYDRG-LIGVMHDWCEPF---DTYPR-TYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~------~~~~~~~~v~~~~-~~~~~~~~~~rg-~~~~~~~~~~~~---~~~~~-sfD~v~ 323 (402)
.+|||+|||+|..+..|++. +. .|+++| ++.+++.+...+ -+..++.-...+ +..+. +||+|+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~-----~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDC-----QVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCC-----EEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCC-----EEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 46999999999999999886 33 455555 345555443211 133444333332 22233 799999
Q ss_pred EccccccccccCCHHHHHHHhhh-hccCCcEEEEEeC-----hhhHHHHHHHHHhc--CceEE
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDR-MLRPGGHVYIRDS-----IDVMDELQEIGKAM--GWHVT 378 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~R-vLrpgG~~~~~~~-----~~~~~~~~~~~~~~--~w~~~ 378 (402)
+... |. ++..+|.|+.| +|||||++++.+. ......+.++++.. ++++.
T Consensus 158 ~d~~--~~----~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 158 IDNA--HA----NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp EESS--CS----SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred ECCc--hH----hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 8754 42 46889999998 9999999999862 11234677777777 56664
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-10 Score=110.59 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=67.2
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccc-cCCCCCCCCCCcccEEEEccccccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMH-DWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~-~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
....+|||+|||+|.++..|++++.++.++.+. .+.+++.+.+..-+..+. +..+ ++|. ||+|+++++|+|+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D---~~~~~~~a~~~~~v~~~~~d~~~---~~~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFD---LPQVIENAPPLSGIEHVGGDMFA---SVPQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEE---CHHHHTTCCCCTTEEEEECCTTT---CCCC-EEEEEEESSGGGS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeC---hHHHHHhhhhcCCCEEEeCCccc---CCCC-CCEEEEecccccC
Confidence 345679999999999999999986544443222 223333332211122222 2222 3555 9999999999998
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+. ....+|+++.|+|||||++++.|
T Consensus 281 ~d~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 281 SDE-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 753 23499999999999999999985
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-10 Score=108.62 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=71.0
Q ss_pred ceEEeccccchH----HHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcC-----------------------------
Q 015704 256 RNVLDMRAGFGG----FAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG----------------------------- 300 (402)
Q Consensus 256 ~~vLD~g~g~G~----~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg----------------------------- 300 (402)
.+|||+|||+|. +|..|++. +..-....|+++| ++.+++.|.+.-
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 186 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV 186 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence 459999999998 66666654 2100012788888 678888876531
Q ss_pred --------ccc-ccccCCCCCCCCC--CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 301 --------LIG-VMHDWCEPFDTYP--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 301 --------~~~-~~~~~~~~~~~~~--~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
.+. ..|+..+ ++|| ..||+|+|.+|+.|+++ .....++.++.+.|||||++++....
T Consensus 187 ~v~~~lr~~V~F~~~dl~~--~~~~~~~~fDlI~crnvliyf~~-~~~~~vl~~~~~~L~pgG~L~lg~sE 254 (274)
T 1af7_A 187 RVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGHSE 254 (274)
T ss_dssp EECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred eechhhcccCeEEecccCC--CCCCcCCCeeEEEECCchHhCCH-HHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 011 1233333 2354 68999999999999874 34479999999999999999996443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=105.49 Aligned_cols=103 Identities=11% Similarity=0.021 Sum_probs=72.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH---cCCC--cEEEeccccCC-------CCCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE---RGAP--AMVAAFATRRL-------PYPSQ 73 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~---~~~~--~~~~~~d~~~l-------p~~~~ 73 (402)
++.+|||+|||+|.++..++.+ .++++|+++.++..+.. .+.. .+.. ..+...|+... +++++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~-n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARR-SLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHH-HTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH-HHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 4569999999999998887754 68899998876655442 2222 3332 34666776665 35678
Q ss_pred CeeEEEecCccccc-----------------ccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 74 AFDLIHCSRCRINW-----------------TRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 74 sfDlI~s~~~~~~~-----------------~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+||+|+|+..+... ..+...+++++.++|||||.+++...
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999998553322 11357889999999999999999853
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-10 Score=113.57 Aligned_cols=96 Identities=10% Similarity=0.078 Sum_probs=72.5
Q ss_pred ccCCCCCeEEEECCc------cchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC---
Q 015704 6 TWIRLLRVVMDAGCG------VASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP--- 71 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG------~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~--- 71 (402)
.+..++.+||||||| +|..+..+++ ..|+++|+++.+. .......+.++|+.++|+.
T Consensus 212 ~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l 282 (419)
T 3sso_A 212 DYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRI 282 (419)
T ss_dssp GGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHH
T ss_pred hhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhh
Confidence 344567899999999 6544444432 3799999999763 1223456778888888877
Q ss_pred ---CCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 72 ---SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 72 ---~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++||+|+|.. .++ ..+...+|++++++|||||++++..
T Consensus 283 ~~~d~sFDlVisdg-sH~-~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 283 ARRYGPFDIVIDDG-SHI-NAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp HHHHCCEEEEEECS-CCC-HHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hcccCCccEEEECC-ccc-chhHHHHHHHHHHhcCCCeEEEEEe
Confidence 68999999864 344 4478899999999999999999974
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.9e-10 Score=107.25 Aligned_cols=97 Identities=12% Similarity=0.014 Sum_probs=73.3
Q ss_pred CCCCeEEEECCccchhHHHHccC--C---ceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--N---VITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~---v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++. . |+++|+++.++..+. +.....+.. ..+...|....+.++++||+|++..
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~-~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 152 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV 152 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCeEEEECChhhccccCCCeEEEEEcC
Confidence 35679999999999998888764 4 999999988776655 334444544 4466667666554567899999987
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++.+.. +++.+.|||||.++++..
T Consensus 153 ~~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 153 GVDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp BBSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred CHHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 765543 578899999999999953
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-10 Score=104.87 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=74.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCC-C-CCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPF-D-TYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~-~-~~~-~sfD~v~~~ 325 (402)
..|||+|||+|.++..|++.+.+ .+|+++| ++.++..+.++ |+ +..+..-.+.+ + .+| ++||.|++.
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~---~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPE---QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTT---SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CeEEEEeeeChHHHHHHHHHCCC---CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 45999999999999999987532 2566666 45666554433 44 33333322222 2 156 899999987
Q ss_pred cccccccc-----cCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHh-cCceEE
Q 015704 326 GLFSVESK-----RCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKA-MGWHVT 378 (402)
Q Consensus 326 ~~~~~~~~-----~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~-~~w~~~ 378 (402)
....+-.. +-.-..+|.++.|+|||||+++++... ...+.+.+.+.. -.|+..
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNL 172 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEC
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCcccc
Confidence 32222111 111136999999999999999997654 334455554443 345543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=8e-10 Score=99.91 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCCC-----CCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYP-----SQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp~~-----~~sfD 76 (402)
++.+|||+|||+|..+..+++. .++++|+++.++..+. +.....+.. ..+...|... ++.. .++||
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQ-QMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH-HHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHH-HHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 5679999999999999988763 6899999998776665 333344443 3456666422 3322 26899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|++.....++. +...++..+ ++|||||.+++...
T Consensus 137 ~V~~d~~~~~~~-~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 137 MVFLDHWKDRYL-PDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EEEECSCGGGHH-HHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEEcCCcccch-HHHHHHHhc-cccCCCeEEEEeCC
Confidence 999876544432 445677777 99999999999853
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-09 Score=101.67 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++. ..++++|+++.++..+. +.+...+.. ..+...|... ++++++||+|+++..
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~v~~~~~d~~~-~~~~~~fD~Iv~npP 185 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPP 185 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEcchhh-hcccCCccEEEECCC
Confidence 4567999999999999888873 37999999998876665 334444543 4456666544 344678999999854
Q ss_pred ccccc------------------------cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWT------------------------RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~------------------------~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+... .+...+++++.++|+|||++++..
T Consensus 186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 32211 123678899999999999999984
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-10 Score=101.62 Aligned_cols=134 Identities=15% Similarity=0.056 Sum_probs=78.8
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCC----ChhhHHhcCcccccccCCCCCC--CCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFN----TLPVIYDRGLIGVMHDWCEPFD--TYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~----~~~~~~~rg~~~~~~~~~~~~~--~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|+++ |.. ..|+++| ++. +++.+..+.-+..+....+... +++ .+||+|+|+.
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~---~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPD---GLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTT---CEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CEEEEEcccCCHHHHHHHHHhCCC---cEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 36999999999999999987 211 1455555 322 4455554332333332222211 233 7999999964
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeChhh----------HHHHHHHHHhcCceEEEeecCCCCCCceEEEEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV----------MDELQEIGKAMGWHVTLRETAEGPHASYRILTAD 396 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~----------~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 396 (402)
. .......++.++.|+|||||+++++-.... .....+.+.+-.|++........-.....+++++
T Consensus 156 ~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 156 A-----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp C-----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSSSEEEEEEE
T ss_pred C-----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccCCcEEEEEE
Confidence 3 111224568899999999999999743311 1111355677788877644332222235566666
Q ss_pred e
Q 015704 397 K 397 (402)
Q Consensus 397 k 397 (402)
|
T Consensus 231 ~ 231 (233)
T 2ipx_A 231 Y 231 (233)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=106.52 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=77.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..++++ .++++|+ +.++..+... ..+.+.. ..+...|....|+++. |+|+++.
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~ 264 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNEN-AAEKGVADRMRGIAVDIYKESYPEA--DAVLFCR 264 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHH-HHHTTCTTTEEEEECCTTTSCCCCC--SEEEEES
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHH-HHhcCCCCCEEEEeCccccCCCCCC--CEEEEec
Confidence 35679999999999998888754 6899999 8887666533 3334433 4567778777776643 9999999
Q ss_pred cccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++++|.++ ...+++++.++|||||.+++...
T Consensus 265 vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 265 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 88888643 57899999999999999988753
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-10 Score=107.94 Aligned_cols=100 Identities=12% Similarity=0.186 Sum_probs=76.3
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .|+++|+++ ++..+. +..+..+. ...+...|.+.++++ ++||+|+|..+.
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~-~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 126 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCB
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHH-HHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCch
Confidence 5679999999999999888765 689999995 554333 44444554 245667788877765 689999998776
Q ss_pred cccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|+..+ ....+.++.++|||||.++++.
T Consensus 127 ~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 127 YMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp TTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 776533 4678889999999999998763
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=105.89 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=76.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.+..++.. ..+...|+..++. +++||+|+++..
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~-~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH-HHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 45789999999999999888764 4999999998886665 444455554 3467778777765 679999998643
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.+...++.++.++|||||.+++.+.
T Consensus 202 -----~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 2446789999999999999999753
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.8e-10 Score=98.83 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=74.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccccCCCCCCC-------CC----CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDT-------YP----RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~-------~~----~sfD~v~~ 324 (402)
.+|||+|||+|+++..+++++..|..+++.|.... .++ ..+..-...... ++ ++||+|+|
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~--------~~v-~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEI--------AGV-RFIRCDIFKETIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCC--------TTC-EEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEeccccccC--------CCe-EEEEccccCHHHHHHHHHHhhcccCCcceEEec
Confidence 46999999999999999998664444444443211 122 111111111110 11 48999999
Q ss_pred ccccc--------cccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCce-EEEeecCCC-CCCceEEE
Q 015704 325 AGLFS--------VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWH-VTLRETAEG-PHASYRIL 393 (402)
Q Consensus 325 ~~~~~--------~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~-~~~~~~~~~-~~~~~~~l 393 (402)
..... |.......+.+|.++.|+|||||.|++..-. .....+...+++. +. +...+..-. +.-.|.++
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEEE
Confidence 64221 1111112357899999999999999987422 2233444555443 43 333332221 44579999
Q ss_pred EEEe
Q 015704 394 TADK 397 (402)
Q Consensus 394 ~~~k 397 (402)
+|++
T Consensus 177 v~~~ 180 (191)
T 3dou_A 177 MFFG 180 (191)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9986
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-10 Score=106.34 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=81.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
..|||+|||+|+|+..+++.++. .|+++| ++.+++.+.++ |+ +..++.-...++. +++||+|++...
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~----~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA----KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC----EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CEEEEecccCCHHHHHHHHhCCC----EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 35999999999999999999862 466666 45666655543 44 2234333333332 479999999632
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh-------hhHHHHHHHHHhcCceEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-------DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-------~~~~~~~~~~~~~~w~~~~ 379 (402)
.....++.++.|+|||||++++.+.. +..+.+.+.+++..|++..
T Consensus 202 -------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 -------VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred -------hhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 23368899999999999999997532 4567888899999999876
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.9e-10 Score=107.21 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=69.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..+++.|. ..|+++|.+.++..+.++ |+ +..++...+.+ ++|.+||+|+|..++
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~----~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~~~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGA----RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVDIIISEPMG 126 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEEECCCB
T ss_pred CEEEEcCCCccHHHHHHHhCCC----CEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-CCCCceeEEEEeCch
Confidence 4699999999999999998864 144555432356555443 44 44454434443 345799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+|+.. ..+...+.++.|+|||||.+++.
T Consensus 127 ~~~~~-~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 127 YMLFN-ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTBTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence 99874 35678899999999999999965
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.01 E-value=7e-10 Score=106.55 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=77.1
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++. .++++|++ .++..+.... .+.+.. ..+...|....+++++ ||+|+++.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENA-RIQGVASRYHTIAGSAFEVDYGND-YDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHH-HHHTCGGGEEEEESCTTTSCCCSC-EEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHH-HhcCCCcceEEEecccccCCCCCC-CcEEEEcc
Confidence 45679999999999998888754 68899998 6766555333 333432 4566777776666644 99999988
Q ss_pred cccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++++..+ ...+++++.++|+|||.+++...
T Consensus 241 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 241 FLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 87777532 37899999999999999998864
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=100.87 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=73.0
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+. +.....+.. ..+...|+.. ++++++||+|+++
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~-~~~~~~~D~v~~~ 169 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAW-ENIKWAGFDDRVTIKLKDIYE-GIEEENVDHVILD 169 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHHTCTTTEEEECSCGGG-CCCCCSEEEEEEC
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHH-HHHHHcCCCCceEEEECchhh-ccCCCCcCEEEEC
Confidence 35679999999999988877653 6899999987776665 333344544 3466667653 3677889999974
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. +++..+++++.++|+|||.+++..
T Consensus 170 ~------~~~~~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 170 L------PQPERVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp S------SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred C------CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2 266789999999999999999986
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.01 E-value=6e-10 Score=104.35 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=76.9
Q ss_pred ceEEeccccchHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhc-----Cc--ccccccCCCCCCCCC-CcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDR-----GL--IGVMHDWCEPFDTYP-RTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~r-----g~--~~~~~~~~~~~~~~~-~sfD~v~ 323 (402)
.+|||+|||+|.++..|++. +. .|+.+| ++.+++.+.++ |+ +..+....+ .+++ ++||+|+
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~--~~~~~~~fD~Vi 184 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGKG-----TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA--DFISDQMYDAVI 184 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSS-----EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT--TCCCSCCEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHcCCCC-----EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchh--ccCcCCCccEEE
Confidence 46999999999999999987 44 566666 45666665554 43 333332222 2455 7999999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeChh-hHHHHHHHHHhcCceEEE
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~-~~~~~~~~~~~~~w~~~~ 379 (402)
++ . .++..+|.++.|+|||||++++.++.. ....+.+.+++..|....
T Consensus 185 ~~-----~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~ 233 (275)
T 1yb2_A 185 AD-----I---PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE 233 (275)
T ss_dssp EC-----C---SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred Ec-----C---cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEE
Confidence 84 3 345799999999999999999998764 455666666666676443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=97.34 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=67.1
Q ss_pred CCCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-------------
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------------- 69 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp------------- 69 (402)
.++.+|||+|||+|.++..++++ .++++|+++... .....+...|+...+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTSSCCC---------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchhhhhhccccccccc
Confidence 45679999999999998887642 589999998321 112345566766665
Q ss_pred ------------CCCCCeeEEEecCcccccc----cCh-------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 70 ------------YPSQAFDLIHCSRCRINWT----RDD-------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 70 ------------~~~~sfDlI~s~~~~~~~~----~d~-------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++++||+|+|+.. .++. .+. ..+++++.++|||||.+++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~-~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAA-VPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 56679999998754 4442 122 2378999999999999999754
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=106.26 Aligned_cols=100 Identities=22% Similarity=0.273 Sum_probs=73.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+ +.++..+.. .....+.. ..+...|... +++. .||+|+++.+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARR-RFADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHH-HHHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHH-HHHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 5679999999999998888754 6788998 776655543 33334432 4466667543 4443 4999999998
Q ss_pred ccccccCh-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|.+.. ..+++++.++|||||.+++...
T Consensus 258 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 258 LLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 77776332 5899999999999999998864
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.4e-10 Score=101.06 Aligned_cols=98 Identities=8% Similarity=0.077 Sum_probs=73.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-CCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-YPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp-~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|..+..++.. .++++|+++.++..+. +.....+.. ..+...|... ++ ..+++||+|++.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAK-QNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 5679999999999999988873 7899999998876665 334444542 4566666544 33 336899999975
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. ..+...+++++.++|||||++++..
T Consensus 150 ~~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 150 AA----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp TT----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred Cc----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 32 3356789999999999999999963
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-09 Score=103.94 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=78.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH----cCCCcEEEeccccCC-C-CCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE----RGAPAMVAAFATRRL-P-YPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~----~~~~~~~~~~d~~~l-p-~~~~sfDlI 78 (402)
.++.+|||||||+|.++..+++. .++++|+++.++..++...... ......+...|.... + +++++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 35679999999999999999865 6899999988776655333221 112344666664432 2 345789999
Q ss_pred EecCcccccc--cC--hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHH
Q 015704 79 HCSRCRINWT--RD--DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 129 (402)
Q Consensus 79 ~s~~~~~~~~--~d--~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~ 129 (402)
+++.. .++. .+ ...+++++.++|+|||.+++.+...+.........+..+
T Consensus 199 i~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 252 (334)
T 1xj5_A 199 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNC 252 (334)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred EECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHH
Confidence 98543 2221 11 368999999999999999997433333333334444333
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.5e-10 Score=108.04 Aligned_cols=100 Identities=15% Similarity=0.082 Sum_probs=69.0
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCcccccc-cCCCCCCCCCCcccEEEEcccccc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVMH-DWCEPFDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~-~~~~~~~~~~~sfD~v~~~~~~~~ 330 (402)
.....+|||+|||+|.++..|+++..++.+ +..|.+.+++.+.++.-+..+. +.. .++|.. |+|+++++++|
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~v~~~~~D~~---~~~p~~-D~v~~~~vlh~ 271 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKG---VNFDLPHVISEAPQFPGVTHVGGDMF---KEVPSG-DTILMKWILHD 271 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHHHHTTCCCCTTEEEEECCTT---TCCCCC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeE---EEecCHHHHHhhhhcCCeEEEeCCcC---CCCCCC-CEEEehHHhcc
Confidence 445678999999999999999986433322 3333233443333332233332 322 246644 99999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+.+. +...+|+++.|+|||||+++|.|.
T Consensus 272 ~~d~-~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 272 WSDQ-HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp SCHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCHH-HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8753 457999999999999999999863
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=100.08 Aligned_cols=107 Identities=16% Similarity=0.071 Sum_probs=74.3
Q ss_pred ceEEeccccchHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhc-----Cc--ccccccCCCCCCCCC-CcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDR-----GL--IGVMHDWCEPFDTYP-RTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~r-----g~--~~~~~~~~~~~~~~~-~sfD~v~ 323 (402)
.+|||+|||.|.++..|++. +. .|+.+| ++.+++.+.++ |. +...+...... +++ .+||+|+
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~-----~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~~~~~~~D~v~ 171 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKG-----LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-ELEEAAYDGVA 171 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS-----EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-CCCTTCEEEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCC-----EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-CCCCCCcCEEE
Confidence 36999999999999999987 33 556666 45666666554 42 33333222222 356 7999999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeChh-hHHHHHHHHHhcCce
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-VMDELQEIGKAMGWH 376 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~-~~~~~~~~~~~~~w~ 376 (402)
++ ..++..+|.++.|+|||||++++..+.. ....+.+.+++..|.
T Consensus 172 ~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 172 LD--------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp EE--------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred EC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 85 3355789999999999999999998763 444555555555555
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-10 Score=103.41 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=75.5
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcC--C-CcEEEeccccCCCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERG--A-PAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~--~-~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++. .++++|+++..+..+........+ . ...+...|+...++++++||+|++
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~ 177 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL 177 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence 35679999999999988877652 689999998877666543333203 2 345667787777777889999997
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+. .++..++.++.++|+|||.+++.++
T Consensus 178 ~~------~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 178 DM------LAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp ES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 42 2566899999999999999999964
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=105.94 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=67.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..+++.|+ ..|+++|.+.+++.+.++ |+ +..++...+.+ ++| ++||+|+|..+
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~----~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGA----KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEWM 140 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC----SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECCC
T ss_pred CEEEEeeccCcHHHHHHHHcCC----CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEcCc
Confidence 3699999999999999999864 145555532366655543 33 44455444443 466 79999999875
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVY 355 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~ 355 (402)
..++....++..+|.++.|+|||||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 4444434456789999999999999998
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-10 Score=101.60 Aligned_cols=93 Identities=10% Similarity=0.184 Sum_probs=64.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCC-C-CCCCcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPF-D-TYPRTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~-~-~~~~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|++... ...|+.+| ++.+++.+.++ |+ +..+......+ + ..+++||+|++.
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASISD---DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTCT---TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CEEEEEeCchhHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4699999999999999998421 12566666 45566555443 43 33444333232 2 234899999987
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.. ......++.++.|+|||||++++.
T Consensus 150 ~~------~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 150 AA------KAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp TT------SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred Cc------HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 32 334678999999999999999994
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-10 Score=100.05 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=71.8
Q ss_pred CCCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcC------CCcEEEeccccCCCCCCCCee
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERG------APAMVAAFATRRLPYPSQAFD 76 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~------~~~~~~~~d~~~lp~~~~sfD 76 (402)
..++.+|||+|||+|.++..+++ ..++++|+++.++..+.... ...+ ....+...|....+..+++||
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV-RKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-HhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence 34678999999999998887764 27999999988776665333 3322 134456667665555567899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
+|++.....++ +.++.++|||||.++++..+
T Consensus 154 ~i~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 154 AIHVGAAAPVV-------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEECSBBSSC-------CHHHHHTEEEEEEEEEEESC
T ss_pred EEEECCchHHH-------HHHHHHhcCCCcEEEEEEec
Confidence 99987664433 46889999999999999643
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-11 Score=105.34 Aligned_cols=101 Identities=14% Similarity=0.008 Sum_probs=60.4
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC-----CCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-----QAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~-----~sfDlI~ 79 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+... ....+....+...|... ++++ ++||+|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~-~~~~~~~~~~~fD~i~ 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRN-AERFGAVVDWAAADGIE-WLIERAERGRPWHAIV 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-HHHHHHHTTCCBSEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH-HHHhCCceEEEEcchHh-hhhhhhhccCcccEEE
Confidence 45679999999999998888764 789999999887655422 22223233344455544 4554 8999999
Q ss_pred ecCccccccc------C-------------------hHHHHHHHHHhcCCCeE-EEEE
Q 015704 80 CSRCRINWTR------D-------------------DGILLLEVNRMLRAGGY-FAWA 111 (402)
Q Consensus 80 s~~~~~~~~~------d-------------------~~~~l~e~~r~LkpgG~-li~~ 111 (402)
++..+++... + ...+++++.++|||||. +++.
T Consensus 107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9765432210 0 06778899999999999 5555
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-10 Score=104.04 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=70.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------------Cc--ccccccCCCCCCC--CC-C
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------------GL--IGVMHDWCEPFDT--YP-R 317 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------------g~--~~~~~~~~~~~~~--~~-~ 317 (402)
..|||+|||+|.++..|++.+.+ .+|+++| ++.+++.+.++ |+ +..+..-...+.+ |+ .
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE---DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT---SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC---CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 46999999999999999998632 2566666 45566555432 44 3333332222222 56 7
Q ss_pred cccEEEEccccccc-----cccCCHHHHHHHhhhhccCCcEEEEE-eChhhHHHHHHHHHhcC
Q 015704 318 TYDLLHAAGLFSVE-----SKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMG 374 (402)
Q Consensus 318 sfD~v~~~~~~~~~-----~~~~~~~~~l~e~~RvLrpgG~~~~~-~~~~~~~~~~~~~~~~~ 374 (402)
+||.|+...-=... ..+.....+|.++.|+|||||++++. +.....+.+.+.+..-.
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 190 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence 99998854100000 00000148999999999999999995 55554555555544443
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-09 Score=102.48 Aligned_cols=170 Identities=12% Similarity=0.025 Sum_probs=102.0
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccC-CCC-CCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRR-LPY-PSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~-lp~-~~~sfDlI~s~~ 82 (402)
++.+|||+| |+|.++..++.. .++++|+++.++..+. +.+...+. ...+...|+.. +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~-~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIE-KAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHH-HHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 467999999 999988877643 6899999998886665 44444555 34567778776 664 356899999886
Q ss_pred cccccccChHHHHHHHHHhcCCCe-EEEEEeCCCCCCh---HHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChhh
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGG-YFAWAAQPVYKHE---EAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNSC 158 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG-~li~~~~~~~~~~---~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (402)
.+... ....+++++.++||||| .+++++.....+. .++.+.+. +..++...........|.. ....
T Consensus 250 p~~~~--~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~------~~~g~~~~~~~~~~~~~~~--~~~~ 319 (373)
T 2qm3_A 250 PETLE--AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLL------NEFNVVITDIIRNFNEYVN--WGYA 319 (373)
T ss_dssp CSSHH--HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHH------HTSCCEEEEEEEEEEEBCC--CSCG
T ss_pred CCchH--HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHH------HhcCcchhhhhhhhhhhcc--cccc
Confidence 53332 25789999999999999 5577754322333 22222221 0223322111111111111 1111
Q ss_pred hhhhhcCCCCCCCCCCCCCCCcccccccceeecCCCC
Q 015704 159 YLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLPEN 195 (402)
Q Consensus 159 ~~l~~aGf~~~~~~~~~~~~~~~y~~~~~~l~~l~~~ 195 (402)
...+..++.+ ....+...||.+....+..+|..
T Consensus 320 ~~~~~~~~~~----~~~~~~~~~y~~~~~~l~~lk~~ 352 (373)
T 2qm3_A 320 EETRAWKLIP----IKKLPEYNWYKSYMFRIETLEGS 352 (373)
T ss_dssp GGSHHHHHSS----SCCCCSSCCCEEEEEEEECCTTC
T ss_pred hhhccccccc----cccCCCCceeeeeeEEEEecCCC
Confidence 1112222321 13446678999999999988743
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=97.51 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=69.4
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..+++ ..++++|+++.++..+.... ...+.. ..+...|.......+++||+|+++.
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL-RKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA 154 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH-HHHTCTTEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCeEEEECCcccCCCCCCCeeEEEECC
Confidence 3567999999999998877764 36899999988776655333 333433 3455556432222257899999987
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++.++. .++.++|||||.+++...
T Consensus 155 ~~~~~~-------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 155 AGPKIP-------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp BBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred chHHHH-------HHHHHHcCCCcEEEEEEC
Confidence 765544 488999999999999964
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-10 Score=101.98 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=70.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCC-CCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFD-TYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~-~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..+++++.. .|+++| ++.+++.+.++ |+ +..++.-.+.++ .++ ++||+|++..
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA----SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC----eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35999999999999988888642 466666 45666655543 43 333332222222 244 7999999998
Q ss_pred ccccccccCCHHHHHHHhhh--hccCCcEEEEEeCh
Q 015704 327 LFSVESKRCNMSTIMLEMDR--MLRPGGHVYIRDSI 360 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~R--vLrpgG~~~~~~~~ 360 (402)
.+.+.. .++..++.++.| +|||||++++....
T Consensus 122 p~~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 122 PYNVDS--ADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CTTSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCCcch--hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 877642 246799999999 99999999998654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.2e-10 Score=100.02 Aligned_cols=91 Identities=16% Similarity=0.031 Sum_probs=66.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|++.+. +|+.+| ++.+++.+.++ |+ +..++.......+-+.+||+|++..++
T Consensus 79 ~~vLdiG~G~G~~~~~la~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 79 SRVLEIGTGSGYQTAILAHLVQ-----HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAP 153 (210)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBC
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-----EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccch
Confidence 4699999999999999999876 556665 45666666554 33 333332222212112799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+|+.+ ++.|+|||||++++.-+.
T Consensus 154 ~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 154 PEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred hhhhH---------HHHHhcccCcEEEEEEcC
Confidence 99874 689999999999998765
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=99.51 Aligned_cols=131 Identities=11% Similarity=0.115 Sum_probs=82.6
Q ss_pred ceEEeccccchHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCC-CCCCCCC--CcccE
Q 015704 256 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWC-EPFDTYP--RTYDL 321 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~-~~~~~~~--~sfD~ 321 (402)
.+|||+|||+|.++..|++. +. .|+.+| ++.+++.+.++ |+ +..+..-. +.++.++ .+||+
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADG-----QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTC-----EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred CEEEEecCCchHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 46999999999999999987 33 566666 45666665554 44 22332211 1123333 49999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHHHHH----hcCceEEEeecCCC
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGK----AMGWHVTLRETAEG 385 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~~~~----~~~w~~~~~~~~~~ 385 (402)
|++... ..+...+|.++.|+|||||++++.+.. .....++++.+ .-+|.......- +
T Consensus 140 V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g 212 (248)
T 3tfw_A 140 IFIDAD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-G 212 (248)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-S
T ss_pred EEECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-C
Confidence 998742 234568999999999999999998532 12334444443 446666554322 2
Q ss_pred CCCceEEEEEEec
Q 015704 386 PHASYRILTADKR 398 (402)
Q Consensus 386 ~~~~~~~l~~~k~ 398 (402)
......+.+++|+
T Consensus 213 ~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 213 TKGWDGFTLAWVN 225 (248)
T ss_dssp TTCSEEEEEEEEC
T ss_pred CCCCCeeEEEEEe
Confidence 2234667777763
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-10 Score=100.69 Aligned_cols=130 Identities=11% Similarity=0.083 Sum_probs=91.6
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Ccc-cccc-cCCCCCCCCCCcccEEEEccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLI-GVMH-DWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~-~~~~-~~~~~~~~~~~sfD~v~~~~~ 327 (402)
..+|||+|||+|.++..++.... -+ .|.++| ++.|++++.++ |+- ..-+ +..+ .+.|.+||+|.+.++
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p--~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~--~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENE--KI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKES--DVYKGTYDVVFLLKM 124 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSC--CC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHH--HHTTSEEEEEEEETC
T ss_pred CCeEEEecCCCCHHHHHHHhcCC--CC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccc--cCCCCCcChhhHhhH
Confidence 44699999999999999987743 22 778888 67888877765 331 1111 1111 123489999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEeCh-----------hhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEE
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----------DVMDELQEIGKAMGWHVTLRETAEGPHASYRILTAD 396 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-----------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~ 396 (402)
++|++++ ..++..+.+.|||||.||--+.. .-....+..+.+=.|.+...... .|-+.+.+
T Consensus 125 LHlL~~~---~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~-----nEl~y~~~ 196 (200)
T 3fzg_A 125 LPVLKQQ---DVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG-----NELVYITS 196 (200)
T ss_dssp HHHHHHT---TCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET-----TEEEEEEC
T ss_pred HHhhhhh---HHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC-----ceEEEEEe
Confidence 9999654 57777999999999999988721 11456677778888888877764 34454444
Q ss_pred e
Q 015704 397 K 397 (402)
Q Consensus 397 k 397 (402)
|
T Consensus 197 ~ 197 (200)
T 3fzg_A 197 G 197 (200)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=99.50 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=68.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC---CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP---YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp---~~~~sfDlI~s 80 (402)
+++.+|||+|||+|.++..+++. .|+++|+++.++.. ..+.++++ .+..+...|+.... ...++||+|++
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCeEEEEcccccchhhhccccceEEEEe
Confidence 46789999999999998877753 69999999977643 23445444 23445566655432 12468999998
Q ss_pred cCcccccccChHH-HHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGI-LLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~-~l~e~~r~LkpgG~li~~~ 112 (402)
+.. . .+... +...+.+.|||||.|+++.
T Consensus 153 d~a-~---~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 153 DIA-Q---PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp CCC-C---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC-C---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 743 2 24444 4456666999999999984
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-10 Score=109.95 Aligned_cols=97 Identities=20% Similarity=0.115 Sum_probs=67.7
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++++ .++++|+.. .+. .+.....+. ...+...|+. .+++ +||+|+++.+
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~---~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~v 256 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA---RHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKRI 256 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT---TCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEESC
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh---cccccccCCCCCeEEEecCCC-CCCC--CCcEEEEehh
Confidence 4679999999999999888764 567777732 111 000111111 2346666764 3444 8999999998
Q ss_pred ccccccCh-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|.++. ..++++++++|||||.+++...
T Consensus 257 lh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 257 LHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp GGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 88877332 6899999999999999999864
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=100.40 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=72.5
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCCC--CCCeeEEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYP--SQAFDLIH 79 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp~~--~~sfDlI~ 79 (402)
++.+|||+|||+|..+..+++. .++++|+++.++..+. +...+.+.. ..+...|+.. ++.. .++||+|+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVAR-ENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 5689999999999999888764 6899999998776665 334444543 3456666543 3322 34899999
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+... ..+...+++++.++|||||++++..
T Consensus 142 ~d~~----~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 142 IDAD----KPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp ECSC----GGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred ECCc----hHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 7532 3355789999999999999999974
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.4e-10 Score=100.88 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=70.3
Q ss_pred CeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CC-CCCCCeeEEEec
Q 015704 12 RVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LP-YPSQAFDLIHCS 81 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~-lp-~~~~sfDlI~s~ 81 (402)
.+|||+|||+|..+..+++. .++++|+++.++..++ +.....+.. ..+..+|..+ ++ +++++||+|++.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAK-ALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHH-HHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 49999999999988877652 6999999998876665 334444544 3455555433 22 336899999975
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. ..+...+++++.++|||||.+++..
T Consensus 137 ~~----~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 137 VS----PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CC----TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred Cc----HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 32 3345779999999999999999963
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=104.71 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=70.1
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||+|.++..+++.|+ ..|+++|.+.+++.+.++ |+ +..++...+.+ ++| ++||+|+|..+.
T Consensus 41 ~VLDiGcGtG~ls~~la~~g~----~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 41 IVLDVGCGTGILSMFAAKHGA----KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWMG 115 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCC----SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCCB
T ss_pred EEEEecCccHHHHHHHHHCCC----CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeCch
Confidence 699999999999999998864 145555532466555443 44 44555444443 366 799999998776
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYI 356 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~ 356 (402)
.++.+...+..+|.++.|+|||||.++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 6666566788999999999999999984
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.7e-10 Score=101.82 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=65.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----cccccccCCCCCCCCCCcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----LIGVMHDWCEPFDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..|++.+. .|+.+| ++.+++.+.++. -+..+....+...+.+.+||+|++..+++|
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIVD-----KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT 146 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred CEEEEEcCCCCHHHHHHHHHcC-----EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcHHH
Confidence 3699999999999999999875 566666 466777666652 222332222221111279999999999998
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+. .++.|+|||||++++..+.
T Consensus 147 ~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 147 LL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CC---------HHHHHTEEEEEEEEEEECS
T ss_pred HH---------HHHHHHcCCCcEEEEEEcC
Confidence 76 3789999999999999764
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.4e-10 Score=107.24 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=68.1
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHc-----------CCCcEEEeccccCC--CC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALER-----------GAPAMVAAFATRRL--PY 70 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~-----------~~~~~~~~~d~~~l--p~ 70 (402)
.++.+|||+|||+|.++..++. ..++++|+++..+..+........ .....+...|.... ++
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 4567999999999998887765 368999999987766654333211 12344666676665 46
Q ss_pred CCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 71 ~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++++||+|+++.. ++..++.++.++|+|||.+++..
T Consensus 184 ~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 184 KSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp ----EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEE
T ss_pred CCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 6778999997532 34458999999999999999885
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=95.06 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=65.6
Q ss_pred CCCCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCC---CCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPY---PSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~---~~~sfDlI~s~~~~ 84 (402)
+++.+|||+|||.. .+|++ ..+++.++++.. ...+...|++.+++ ++++||+|+|+.++
T Consensus 11 ~~g~~vL~~~~g~v------------~vD~s-----~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 11 SAGQFVAVVWDKSS------------PVEAL-----KGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CTTSEEEEEECTTS------------CHHHH-----HHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCEEEEecCCce------------eeeCC-----HHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 46789999999961 13444 455555555432 34566778888887 78899999998875
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|+..++..++++++|+|||||++++..
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence 5553688999999999999999999974
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=102.67 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=69.0
Q ss_pred CCCCeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHHH--HHcCCCcEEE--eccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFA--LERGAPAMVA--AFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~a--~~~~~~~~~~--~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++++ .|+++|+++ +...+..+.. ...+....+. ..|+..+| +++||+|+|...
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~ 157 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG 157 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC
T ss_pred CCCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC
Confidence 35679999999999999988876 899999998 4321110000 0001133556 66777765 679999998754
Q ss_pred ccccccCh----H---HHHHHHHHhcCCCe--EEEEEeCC
Q 015704 84 RINWTRDD----G---ILLLEVNRMLRAGG--YFAWAAQP 114 (402)
Q Consensus 84 ~~~~~~d~----~---~~l~e~~r~LkpgG--~li~~~~~ 114 (402)
++..++ . .++.++.++||||| .|++..+.
T Consensus 158 --~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 158 --ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp --CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred --cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 222121 1 37899999999999 99998653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-10 Score=104.68 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=76.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCC-hhhH-HhcCc-ccccccCCCCCCCCC-CcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNT-LPVI-YDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~~-~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~ 331 (402)
..|||+|||+|+++..++++ ..|..+++.+...... .... ...|. +..+++ ..++..+| ++||+|+|... .+.
T Consensus 76 ~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~V~sd~~-~~~ 152 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKS-RVDIHTLPVERTDVIMCDVG-ESS 152 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEEC-SCCTTTSCCCCCSEEEECCC-CCC
T ss_pred CEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhhhhhhhccCCCeEEEec-ccCHhHCCCCCCcEEEEeCc-ccC
Confidence 46999999999999999998 4577777776311000 0000 00011 222211 12333355 89999999866 433
Q ss_pred cccC-CH---HHHHHHhhhhccCCc--EEEEEeC----hhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 332 SKRC-NM---STIMLEMDRMLRPGG--HVYIRDS----IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 332 ~~~~-~~---~~~l~e~~RvLrpgG--~~~~~~~----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
.+.. +. ..+|.++.|+||||| .|++..- .++.+.+..+.+... .+...+.-.-+...|.+++|.+
T Consensus 153 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~~ 227 (265)
T 2oxt_A 153 PKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSRA 227 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESSC
T ss_pred CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEecC
Confidence 2210 00 138999999999999 9999752 212233333333221 2333332212334688888754
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=102.10 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=68.8
Q ss_pred CCCCeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHH-H-HHcCCCcEEE--eccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQF-A-LERGAPAMVA--AFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~-a-~~~~~~~~~~--~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .|+++|+++ +...+.... . ...+....+. ..|+..+| +++||+|+|...
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~ 149 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG 149 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc
Confidence 35679999999999999988875 899999998 431110000 0 0001123455 66777765 679999998754
Q ss_pred ccccccCh----H---HHHHHHHHhcCCCe--EEEEEeCC
Q 015704 84 RINWTRDD----G---ILLLEVNRMLRAGG--YFAWAAQP 114 (402)
Q Consensus 84 ~~~~~~d~----~---~~l~e~~r~LkpgG--~li~~~~~ 114 (402)
+...++ . .++.++.++||||| .|++..+.
T Consensus 150 --~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 150 --ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp --CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred --ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 222221 1 37899999999999 99998653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=104.88 Aligned_cols=100 Identities=23% Similarity=0.330 Sum_probs=73.4
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..+++. .++++|+ +.++..+. +.....+. ...+...|..+ +++. .||+|+++.+
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 258 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTAR-SYLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFV 258 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESC
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHH-HHHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEccc
Confidence 4679999999999998888754 5777888 76665554 33334444 24566666543 3443 4999999988
Q ss_pred ccccccCh-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|.++. ..+++++.++|+|||.+++...
T Consensus 259 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 259 LLNWPDHDAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 77776332 5899999999999999999864
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-10 Score=100.92 Aligned_cols=124 Identities=13% Similarity=0.160 Sum_probs=79.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCCCCC-CCCC-Cc-ccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWCEPF-DTYP-RT-YDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~~~~-~~~~-~s-fD~v~~ 324 (402)
+|||+|||+|.++..++.+++ ..|+++| ++.+++.+.++ |+ +..+....+.+ +.++ ++ ||+|++
T Consensus 56 ~vLDlGcGtG~~~~~~~~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 56 ECLDGFAGSGSLGFEALSRQA----KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp EEEETTCTTCHHHHHHHHTTC----SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred eEEEcCCccCHHHHHHHHccC----CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 599999999999999887764 2677777 56777766553 32 23333222222 2233 68 999999
Q ss_pred ccccccccccCCHHHHHHHh--hhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 325 AGLFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~--~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
...+. . .+...++.++ .|+|||||.++++..... +.. ..-.|...... .+| ...+.+.+|
T Consensus 132 ~~~~~-~---~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~---~~~--~~~~~~~~~~~-~yG---~~~~~~~~~ 193 (201)
T 2ift_A 132 DPPFH-F---NLAEQAISLLCENNWLKPNALIYVETEKDK---PLI--TPENWTLLKEK-TTG---IVSYRLYQN 193 (201)
T ss_dssp CCCSS-S---CHHHHHHHHHHHTTCEEEEEEEEEEEESSS---CCC--CCTTEEEEEEE-EET---TEEEEEEEE
T ss_pred CCCCC-C---ccHHHHHHHHHhcCccCCCcEEEEEECCCC---Ccc--ccchhHHHHHH-hcC---CEEEEEEec
Confidence 87753 2 2457889999 789999999999876533 111 11347654433 243 556666665
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-10 Score=113.29 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=79.3
Q ss_pred HHHHHHhcccCCCCcceEEecccc------chHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhcCcccccccCCC
Q 015704 241 IESYVRALHWKKMKLRNVLDMRAG------FGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCE 310 (402)
Q Consensus 241 ~~~y~~~~~~~~~~~~~vLD~g~g------~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~ 310 (402)
...|.+.+.....+-.+|||+||| +|+.+..++++ +. .|+++| ++.+.. ...-+..+..-++
T Consensus 203 ~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a-----~V~GVDiSp~m~~---~~~rI~fv~GDa~ 274 (419)
T 3sso_A 203 TPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG-----QIYGLDIMDKSHV---DELRIRTIQGDQN 274 (419)
T ss_dssp HHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC-----EEEEEESSCCGGG---CBTTEEEEECCTT
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC-----EEEEEECCHHHhh---cCCCcEEEEeccc
Confidence 345655554222334679999999 67777777654 33 455555 344421 1111333333333
Q ss_pred CCCCC------CCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC------------------hhhHHHH
Q 015704 311 PFDTY------PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------------IDVMDEL 366 (402)
Q Consensus 311 ~~~~~------~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~------------------~~~~~~~ 366 (402)
.++.. +++||+|+|... .+.. +...+|.|+.|+|||||++++.|- ..+.+.+
T Consensus 275 dlpf~~~l~~~d~sFDlVisdgs-H~~~---d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~l 350 (419)
T 3sso_A 275 DAEFLDRIARRYGPFDIVIDDGS-HINA---HVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLL 350 (419)
T ss_dssp CHHHHHHHHHHHCCEEEEEECSC-CCHH---HHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHH
T ss_pred ccchhhhhhcccCCccEEEECCc-ccch---hHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHH
Confidence 32222 379999999743 3332 468999999999999999999852 2457888
Q ss_pred HHHHHhcCceE
Q 015704 367 QEIGKAMGWHV 377 (402)
Q Consensus 367 ~~~~~~~~w~~ 377 (402)
+.+++.+.|.-
T Consensus 351 k~l~D~l~~~~ 361 (419)
T 3sso_A 351 KSLIDAIQHQE 361 (419)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHhcccc
Confidence 88998888764
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=102.54 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=71.4
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHH---H-cCCCcEEEeccccCCCC--CCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL---E-RGAPAMVAAFATRRLPY--PSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~---~-~~~~~~~~~~d~~~lp~--~~~sfDlI 78 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+...... . ......+...|....+. ++++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 45679999999999999988764 688999998777555432211 0 11234466666555443 46899999
Q ss_pred EecCcccccccCh----HHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~~~~~~~d~----~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++... .++.... ..+++++.++|||||.+++...
T Consensus 174 i~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 174 IIDTT-DPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCC-CccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 98654 3332222 6889999999999999999853
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-09 Score=99.51 Aligned_cols=97 Identities=14% Similarity=0.263 Sum_probs=70.0
Q ss_pred CCCCeEEEECCccchhHHHHcc----------CCceEEeCCccchHHHHHHHHHHc-----CCCcEEEeccccCCCCCC-
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP----------RNVITMSIAPKDVHENQIQFALER-----GAPAMVAAFATRRLPYPS- 72 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~----------~~v~~vdi~~~~~~~a~~~~a~~~-----~~~~~~~~~d~~~lp~~~- 72 (402)
.++.+|||+|||+|.++..+++ ..++++|+++..+..+........ .....+...|... ++++
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 161 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPN 161 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGG
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcC
Confidence 4567999999999998887765 268999999987766654333221 1234455666554 4444
Q ss_pred CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++||+|+++....+. ++++.+.|||||.+++...
T Consensus 162 ~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDT-------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSC-------CHHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHH-------HHHHHHHhcCCCEEEEEEe
Confidence 789999988765443 2788999999999999964
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=104.07 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=60.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHH-h-cC--cccccccCCCCCCCCC-CcccEEEEccccc-
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIY-D-RG--LIGVMHDWCEPFDTYP-RTYDLLHAAGLFS- 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~-~-rg--~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~- 329 (402)
..|||+|||+|+++..|++++ .|..+++....++.++..+. + .| .+..+.. . ++..+| .+||+|+|...+.
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~-~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-D~~~l~~~~fD~V~sd~~~~~ 160 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-V-DVFFIPPERCDTLLCDIGESS 160 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-C-CTTTSCCCCCSEEEECCCCCC
T ss_pred CEEEEEcCCCCHHHHHHHhcC-CEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-c-ccccCCcCCCCEEEECCcccc
Confidence 469999999999999999984 56666663222222211110 1 11 1222222 0 223345 7999999976653
Q ss_pred -c-ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 -V-ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 -~-~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
| ..+......+|.++.|+|||||.|++..
T Consensus 161 g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 161 PNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 1111001158999999999999999974
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.4e-10 Score=103.63 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=70.4
Q ss_pred CCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHc--CCC------------------------
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALER--GAP------------------------ 57 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~--~~~------------------------ 57 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+........ +..
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4569999999999988877643 68999999887766553221110 110
Q ss_pred ---cE-------------EEeccccCCCC-----CCCCeeEEEecCccccccc--------ChHHHHHHHHHhcCCCeEE
Q 015704 58 ---AM-------------VAAFATRRLPY-----PSQAFDLIHCSRCRINWTR--------DDGILLLEVNRMLRAGGYF 108 (402)
Q Consensus 58 ---~~-------------~~~~d~~~lp~-----~~~sfDlI~s~~~~~~~~~--------d~~~~l~e~~r~LkpgG~l 108 (402)
.. +...|...... ..++||+|+|+..+.+... ....+++++.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 12 55666544221 3458999999876554431 2358999999999999999
Q ss_pred EEEe
Q 015704 109 AWAA 112 (402)
Q Consensus 109 i~~~ 112 (402)
+++.
T Consensus 211 ~~~~ 214 (250)
T 1o9g_A 211 AVTD 214 (250)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9964
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.2e-10 Score=100.95 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=85.5
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEe-ccc-----cCCC---CCCCCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAA-FAT-----RRLP---YPSQAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~-~d~-----~~lp---~~~~sfDl 77 (402)
++.+|||+|||+|.++..+++. .|+++|+++.++..+. ++........ .++ ..++ ++..+||+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~ 111 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKI-----RSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDV 111 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHH-----HTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECC
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHH-----HhCccccccccceEEEeCHhHcCcCCCCEEEEEE
Confidence 4569999999999999888865 6899999999986533 2221111110 011 1121 22234554
Q ss_pred EEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHHHhhhhhcceeeeeccceEEEeecCCChh
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEMLDLTTRLCWELVKKEGYIAIWKKPTNNS 157 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (402)
++++ ...++.++.|+|||||.+++...| .....|..+.. .+. +.+. ........+.
T Consensus 112 v~~~---------l~~~l~~i~rvLkpgG~lv~~~~p------~~e~~~~~~~~----~G~--~~d~---~~~~~~~~~l 167 (232)
T 3opn_A 112 SFIS---------LDLILPPLYEILEKNGEVAALIKP------QFEAGREQVGK----NGI--IRDP---KVHQMTIEKV 167 (232)
T ss_dssp SSSC---------GGGTHHHHHHHSCTTCEEEEEECH------HHHSCHHHHC-----CCC--CCCH---HHHHHHHHHH
T ss_pred Ehhh---------HHHHHHHHHHhccCCCEEEEEECc------ccccCHHHhCc----CCe--ecCc---chhHHHHHHH
Confidence 4422 267999999999999999997421 11111211100 000 0000 0000112334
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCcccccccceeecCC
Q 015704 158 CYLNREAGTIPPLCDPDDNPDNVWYVDLKACITRLP 193 (402)
Q Consensus 158 ~~~l~~aGf~~~~~~~~~~~~~~~y~~~~~~l~~l~ 193 (402)
..++.++||.+..+ ...+...+|.+.+.++..-+
T Consensus 168 ~~~l~~aGf~v~~~--~~~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 168 LKTATQLGFSVKGL--TFSPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp HHHHHHHTEEEEEE--EECSSCBTTTBCCEEEEEEE
T ss_pred HHHHHHCCCEEEEE--EEccCCCCCCCHHHHHHHhh
Confidence 55777889864333 35566677888777776443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=98.12 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=68.7
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC---CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP---YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp---~~~~sfDlI~s 80 (402)
.++.+|||+|||+|.++..+++ ..++++|+++.++..+. +.++.. ....+...|+.... ...++||+|++
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcchhhcccCCceEEEE
Confidence 3567999999999998887764 36899999987665443 333322 23445666665521 12368999997
Q ss_pred cCcccccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
... ..+. ..++.++.++|||||.+++..
T Consensus 150 ~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 150 DVA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CCC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 643 2233 355999999999999999974
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-09 Score=97.71 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=69.2
Q ss_pred CCCCeEEEECCccchhHHHHcc---CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCC-CeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQ-AFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~---~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~-sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++ ..++++|+++..+..+. +.....+.. ..+...|. ..+++++ .||+|+++..
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAK-RNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTAG 167 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECSB
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECCc
Confidence 3567999999999999888875 47999999987776555 333334443 34555564 3445444 5999998876
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..++. .++.+.|+|||.++++..
T Consensus 168 ~~~~~-------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 168 APKIP-------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp BSSCC-------HHHHHTEEEEEEEEEEEC
T ss_pred HHHHH-------HHHHHhcCCCcEEEEEEe
Confidence 55443 378999999999999974
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.93 E-value=5.5e-10 Score=103.90 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=66.1
Q ss_pred ceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
.+|||+|||+|.++..+++. +. .|+.+| ++.+++.+.+++- +..+....+.+ +++ ++||+|++..+
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~--- 157 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEI-----TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL-PFSDTSMDAIIRIYA--- 157 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTS-----EEEEEESCHHHHHHHHHHCTTSEEEECCTTSC-SBCTTCEEEEEEESC---
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC-----eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhC-CCCCCceeEEEEeCC---
Confidence 46999999999999999987 54 566666 5678888877753 22333323333 355 79999999744
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
...+.|+.|+|||||++++.++.
T Consensus 158 -------~~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 158 -------PCKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp -------CCCHHHHHHHEEEEEEEEEEEEC
T ss_pred -------hhhHHHHHHhcCCCcEEEEEEcC
Confidence 23589999999999999999765
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=107.88 Aligned_cols=101 Identities=12% Similarity=-0.030 Sum_probs=71.2
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHH--HH----HHHHHcC--CCc-EEEeccccCC--CC--CC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHEN--QI----QFALERG--APA-MVAAFATRRL--PY--PS 72 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a--~~----~~a~~~~--~~~-~~~~~d~~~l--p~--~~ 72 (402)
++.+|||+|||+|.++..++.. .++|+|+++.++..+ |. +.+...+ ... .+..+|.... ++ ..
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~ 321 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI 321 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccccc
Confidence 5679999999999998888763 599999999877655 22 2233344 223 3444432211 22 24
Q ss_pred CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 73 QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++||+|+++..+ +.++....++++.+.|||||.+++..
T Consensus 322 ~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 322 PQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp GGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 689999987553 33467888999999999999999983
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-09 Score=103.19 Aligned_cols=103 Identities=17% Similarity=0.023 Sum_probs=78.5
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||+|||+|.++..++. ..++++|+++.++..+. +.+...+. ...+...|+.+++.+.++||+|+++..
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~-~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npP 281 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAR-EAALASGLSWIRFLRADARHLPRFFPEVDRILANPP 281 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHH-HHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECCC
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHH-HHHHHcCCCceEEEeCChhhCccccCCCCEEEECCC
Confidence 567999999999998877664 47999999998887665 44445555 356778888888877788999999765
Q ss_pred ccccccC-------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRD-------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d-------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.....+ ...+++++.++|||||.+++.+.
T Consensus 282 yg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 282 HGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3322211 25789999999999999999974
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=99.71 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=70.1
Q ss_pred CCCeEEEECCccchhHHHHcc--------CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC---CCCC-CCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLLP--------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL---PYPS-QAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~--------~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l---p~~~-~sfDl 77 (402)
++.+|||||||+|..+..+++ ..|+++|+++.++..+. .......+..+|.... +... .+||+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~ 155 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPL 155 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCE
Confidence 457999999999998887753 37999999998775443 2222345667776663 5433 47999
Q ss_pred EEecCcccccccChHHHHHHHHH-hcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTRDDGILLLEVNR-MLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r-~LkpgG~li~~~ 112 (402)
|++... | .+...++.++.+ +|||||++++..
T Consensus 156 I~~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 156 IFIDNA--H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EEEESS--C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred EEECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 997643 2 267889999997 999999999984
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7e-10 Score=107.65 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=66.3
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCccccc-ccCCCCCCCCCCcccEEEEccccccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~-~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
....+|||+|||+|.++..|+++.... .++..|.+.+++.+.+..-+..+ ++..+ ++|. ||+|+++++|+|+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~v~~~~~d~~~---~~p~-~D~v~~~~~lh~~ 259 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKL---KCIVFDRPQVVENLSGSNNLTYVGGDMFT---SIPN-ADAVLLKYILHNW 259 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHTTCCCBTTEEEEECCTTT---CCCC-CSEEEEESCGGGS
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCC---eEEEeeCHHHHhhcccCCCcEEEeccccC---CCCC-ccEEEeehhhccC
Confidence 345679999999999999999873222 23333322333333322112222 22222 3454 9999999999998
Q ss_pred cccCCHHHHHHHhhhhccC---CcEEEEEeC
Q 015704 332 SKRCNMSTIMLEMDRMLRP---GGHVYIRDS 359 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrp---gG~~~~~~~ 359 (402)
.+. ....+|+++.|+||| ||++++.|.
T Consensus 260 ~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 260 TDK-DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp CHH-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred CHH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 753 234999999999999 999999863
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.4e-09 Score=96.14 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=78.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-------Cc---ccccccCCCCCC------CCC-C
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-------GL---IGVMHDWCEPFD------TYP-R 317 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-------g~---~~~~~~~~~~~~------~~~-~ 317 (402)
.+|||+|||+|.++..|+++.. ...|+.+| ++.+++.+.++ |+ +..++.-...+. .++ .
T Consensus 38 ~~VLDlG~G~G~~~l~la~~~~---~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 38 CRIADLGAGAGAAGMAVAARLE---KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp EEEEECCSSSSHHHHHHHHHCT---TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CEEEEeCChHhHHHHHHHHhCC---CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 4699999999999999998852 13666666 45666555443 22 334443333331 245 7
Q ss_pred cccEEEEccccccc---------------cccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceE
Q 015704 318 TYDLLHAAGLFSVE---------------SKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHV 377 (402)
Q Consensus 318 sfD~v~~~~~~~~~---------------~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~ 377 (402)
+||+|+|.--+... ...++...++.++.|+|||||++++--+.+....+...+++- |..
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 99999997332211 123457899999999999999999987776666666666663 653
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-09 Score=97.90 Aligned_cols=130 Identities=12% Similarity=0.106 Sum_probs=76.9
Q ss_pred ceEEeccccchHHHHHHhhc---CCCceEEEeccCCCCCChhhHHhcCc---ccccccCCCC-CCCC-----CCcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVSGFNTLPVIYDRGL---IGVMHDWCEP-FDTY-----PRTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~~~~~~~~~~~rg~---~~~~~~~~~~-~~~~-----~~sfD~v~ 323 (402)
++|||+|||+|..+..|++. +..|..+++.+.......+.+...|+ +..+..-... ++.+ +.+||+|+
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~ 141 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIF 141 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEE
Confidence 46999999999999999984 33223333333222222333333354 3333322211 1222 47999999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHHHHHhc----CceEEEeecCCCCC
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGKAM----GWHVTLRETAEGPH 387 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~~~~~~----~w~~~~~~~~~~~~ 387 (402)
+... ..+...+|.++.|+|||||++++.+-. .....++++.+.+ +++..+-...
T Consensus 142 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~---- 211 (242)
T 3r3h_A 142 IDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIA---- 211 (242)
T ss_dssp EESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSS----
T ss_pred EcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEcc----
Confidence 8743 224568999999999999999997421 2234556555544 4554444332
Q ss_pred CceEEEEEEe
Q 015704 388 ASYRILTADK 397 (402)
Q Consensus 388 ~~~~~l~~~k 397 (402)
..+++++|
T Consensus 212 --dG~~~~~k 219 (242)
T 3r3h_A 212 --DGMFLVQP 219 (242)
T ss_dssp --SCEEEEEE
T ss_pred --CceEEEEE
Confidence 34777776
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=103.68 Aligned_cols=103 Identities=8% Similarity=-0.046 Sum_probs=74.3
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCCCC----CCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPY----PSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~lp~----~~~sfDlI~s 80 (402)
++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.+...++. ..+...|+..+.. ..++||+|++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~-~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAK-ENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHH-HHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 4679999999999999888765 7899999998886665 334444543 4566666544321 1468999998
Q ss_pred cCcccc---------cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRIN---------WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~---------~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+...+. +..+...++.++.++|+|||.+++...
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 654222 233457899999999999999887753
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=102.48 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|..+..+++. .++++|+++.++..+. +.+...+.. ..+...|...++..+++||+|++..
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~-~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 45679999999999988888742 6999999998776655 334444553 4566677777665567899999742
Q ss_pred c-----ccccccC----------------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 C-----RINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~-----~~~~~~d----------------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. .++..++ ...+++++.++|||||.++++|.
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 2 1111111 14789999999999999999874
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=98.70 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=79.9
Q ss_pred ceEEeccccchHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCC-CCCCCCC-----Cc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWC-EPFDTYP-----RT 318 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~-~~~~~~~-----~s 318 (402)
.+|||+|||+|.++..|++. +. .|+.+| ++.+++.+.++ |+ +..++... +.++.++ .+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 140 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDG-----TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ 140 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCC-----EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence 36999999999999999987 43 566666 45566555443 43 22333211 1112222 68
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHHHHHhc----CceEEEeec
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGKAM----GWHVTLRET 382 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~~~~~~----~w~~~~~~~ 382 (402)
||+|++... ..+...++.++.|+|||||++++.+.. .....++++.+.+ +|....-..
T Consensus 141 fD~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 214 (225)
T 3tr6_A 141 YDLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI 214 (225)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred ccEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 999997642 224578999999999999999998632 1233455544433 566665544
Q ss_pred CCCCCCceEEEEEEec
Q 015704 383 AEGPHASYRILTADKR 398 (402)
Q Consensus 383 ~~~~~~~~~~l~~~k~ 398 (402)
.+ .+++++|.
T Consensus 215 ~d------G~~~~~k~ 224 (225)
T 3tr6_A 215 GD------GLTLARKK 224 (225)
T ss_dssp TT------CEEEEEEC
T ss_pred CC------ccEEEEEC
Confidence 33 37777774
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.91 E-value=4.9e-09 Score=98.11 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=71.6
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..+++. .++++|+++..+..+. +.....+. ...+...|.... +++++||+|+++.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~ 189 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE-SNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLDV 189 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHH-HHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEECC
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEECC
Confidence 4679999999999988777643 6899999987776555 33333343 234555665554 5667899999742
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++..++.++.++|+|||.+++.++
T Consensus 190 ------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 190 ------PDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp ------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 3567899999999999999999963
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-09 Score=94.65 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=69.1
Q ss_pred ceEEeccccchHHHHHHhhc-CCC-----ceEEEeccCCCCCChhhHHhcCccccc-ccCCCCCC-------CCC-Cccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFD-----CWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFD-------TYP-RTYD 320 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~-----~~~~~v~~~~~~~~~~~~~~rg~~~~~-~~~~~~~~-------~~~-~sfD 320 (402)
.+|||+|||+|.++..|+++ |.. .....|+++|.+.+... .+ +..+ ........ .++ ++||
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~---~~-~~~~~~~d~~~~~~~~~~~~~~~~~~fD 99 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL---EG-ATFLCPADVTDPRTSQRILEVLPGRRAD 99 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCC---TT-CEEECSCCTTSHHHHHHHHHHSGGGCEE
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccC---CC-CeEEEeccCCCHHHHHHHHHhcCCCCCc
Confidence 46999999999999999987 310 00013444442111100 01 1111 11111100 144 6999
Q ss_pred EEEEccccccc----ccc----CCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEEEeecCCC-CCCce
Q 015704 321 LLHAAGLFSVE----SKR----CNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVTLRETAEG-PHASY 390 (402)
Q Consensus 321 ~v~~~~~~~~~----~~~----~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~ 390 (402)
+|+|...++.. .+. .....+|.++.|+|||||.+++.+-. .....+...++..--++.......+ +...|
T Consensus 100 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~~~~~e 179 (196)
T 2nyu_A 100 VILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSE 179 (196)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC--------
T ss_pred EEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccCccCce
Confidence 99996544321 111 00147899999999999999998532 1223333333333222333322111 23457
Q ss_pred EEEEEEe
Q 015704 391 RILTADK 397 (402)
Q Consensus 391 ~~l~~~k 397 (402)
.++++..
T Consensus 180 ~~~v~~g 186 (196)
T 2nyu_A 180 VYFLATQ 186 (196)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 7887764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-09 Score=96.22 Aligned_cols=133 Identities=13% Similarity=0.127 Sum_probs=76.0
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHh----cCcccccccCCCC---CCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYD----RGLIGVMHDWCEP---FDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~~~~~~~~~---~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++. |... .|+++| ++.+++.+.+ +.-+..++.-.+. +..++.+||+|++..
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCe---EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 36999999999999999976 2111 344445 3444433322 1112233322222 122347999999874
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeChh-----------hHHHHHHHHHhcCceEEEeecCCCCCCceEEEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-----------VMDELQEIGKAMGWHVTLRETAEGPHASYRILTA 395 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~-----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~ 395 (402)
. .......++.++.|+|||||++++.-... ..+.++.+ ..- ++.....+...-.....++++
T Consensus 152 ~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~~ 224 (227)
T 1g8a_A 152 A-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFVV 224 (227)
T ss_dssp C-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEEE
T ss_pred C-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEEE
Confidence 3 11122355999999999999999962110 12355555 443 887655443222233556777
Q ss_pred Eec
Q 015704 396 DKR 398 (402)
Q Consensus 396 ~k~ 398 (402)
+|+
T Consensus 225 ~~~ 227 (227)
T 1g8a_A 225 RKT 227 (227)
T ss_dssp ECC
T ss_pred EeC
Confidence 763
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-09 Score=104.36 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=78.7
Q ss_pred cCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-CCCCCCeeEEEecCc
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-PYPSQAFDLIHCSRC 83 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-p~~~~sfDlI~s~~~ 83 (402)
+..++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.+..++....+...|+... +...+.||+|+++..
T Consensus 211 ~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~-~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 211 MVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLD-QAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred HhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHH-HHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 3345789999999999999888765 5899999998887665 44445566555556665442 221344999998765
Q ss_pred ccccc--------cChHHHHHHHHHhcCCCeEEEEEeCCCCCChHH
Q 015704 84 RINWT--------RDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEA 121 (402)
Q Consensus 84 ~~~~~--------~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~e 121 (402)
.+... .+...++..+.++|+|||.+++++........+
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~ 335 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLED 335 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHH
Confidence 43211 123578899999999999999776433333333
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.91 E-value=2e-09 Score=96.40 Aligned_cols=97 Identities=11% Similarity=0.105 Sum_probs=70.8
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCCCCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPYPSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp~~~~sfDlI~s~ 81 (402)
++.+|||+|||+|..+..+++. .++++|+++.++..+.... ...+.. ..+...|... ++..++ ||+|++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRML-HDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH-HHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 5679999999999999888754 6899999988776655333 333332 3455556433 344446 9999976
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.. ..+...+++++.++|||||.+++..
T Consensus 134 ~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 32 3366889999999999999999864
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-09 Score=97.05 Aligned_cols=134 Identities=13% Similarity=0.059 Sum_probs=76.7
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCC----hhhHHhcCccccc-ccCCCCC--CCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNT----LPVIYDRGLIGVM-HDWCEPF--DTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~----~~~~~~rg~~~~~-~~~~~~~--~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|+++.+|++. +.+ ..|.++| ++.+ ++.+.+|.-+..+ .+-.... ..++.+||+|++.-
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~---G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELN---GKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTT---SEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CEEEEEeecCCHHHHHHHHHhCCC---CEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence 45999999999999999875 211 1455555 3333 3455555322222 2222111 12247999999984
Q ss_pred ccccccccCCHHHHH-HHhhhhccCCcEEEEEeC----------hhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEE
Q 015704 327 LFSVESKRCNMSTIM-LEMDRMLRPGGHVYIRDS----------IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTA 395 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l-~e~~RvLrpgG~~~~~~~----------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~ 395 (402)
.+ + +...+| ..+.|+|||||+++++-. .+..+.....+++-..++....+...=+..+-++++
T Consensus 155 a~---~---~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~ 228 (232)
T 3id6_C 155 AQ---P---DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLS 228 (232)
T ss_dssp CC---T---THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEE
T ss_pred CC---h---hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEE
Confidence 32 2 334455 455669999999998731 122233444555545666665543222235677777
Q ss_pred Eec
Q 015704 396 DKR 398 (402)
Q Consensus 396 ~k~ 398 (402)
+|+
T Consensus 229 ~~~ 231 (232)
T 3id6_C 229 KYK 231 (232)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-09 Score=99.64 Aligned_cols=120 Identities=10% Similarity=0.020 Sum_probs=76.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH-c---CCCcEEEeccccC-CCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R---GAPAMVAAFATRR-LPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~-~---~~~~~~~~~d~~~-lp~~~~sfDlI~ 79 (402)
.++.+|||+|||+|.++..+++. .++++|+++..+..+......- . .....+...|... ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 35679999999999999998865 6899999987776555332210 1 1233455666433 344457899999
Q ss_pred ecCccccccc-----ChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHH
Q 015704 80 CSRCRINWTR-----DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 129 (402)
Q Consensus 80 s~~~~~~~~~-----d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~ 129 (402)
+... .++.. ....+++++.++|+|||.+++.+.........+......+
T Consensus 169 ~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 222 (296)
T 1inl_A 169 IDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRI 222 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHH
T ss_pred EcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHH
Confidence 7533 33111 1268899999999999999998532222333334434333
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=97.74 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=71.0
Q ss_pred CCCCeEEEECCccchhHHHHccC---------CceEEeCCccchHHHHHHHHHHcC-----C-CcEEEeccccCCC----
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---------NVITMSIAPKDVHENQIQFALERG-----A-PAMVAAFATRRLP---- 69 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---------~v~~vdi~~~~~~~a~~~~a~~~~-----~-~~~~~~~d~~~lp---- 69 (402)
.++.+|||+|||+|.++..+++. .++++|+++..+..+..... ..+ . ...+...|....+
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIK-RDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHH-HHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHH-HcCccccccCCEEEEECChHhcccccC
Confidence 45689999999999988777642 68999999887766653333 333 2 3446666766544
Q ss_pred CCCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 70 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 70 ~~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...++||+|++.....+ ++.++.+.|||||.+++...
T Consensus 158 ~~~~~fD~I~~~~~~~~-------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASE-------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSS-------CCHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHH-------HHHHHHHhcCCCcEEEEEEc
Confidence 45678999998766443 24788999999999999964
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=9e-09 Score=94.18 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=72.3
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..+++. .++++|+++..+..+.. .....+. ...+...|.....+++++||+|+++.
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~--- 166 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQK-NLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV--- 166 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHH-HHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS---
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHH-HHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC---
Confidence 5679999999999988887753 78999999877765553 3333343 23455566655433567899999742
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.++..+++++.++|+|||.+++.++
T Consensus 167 ---~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 167 ---REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp ---SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ---cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2667889999999999999999964
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.8e-10 Score=107.45 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=82.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
+|||+|||+|.++..+++.+.. ..|+.+| ++.+++.+.++ ++ +..+.. ++..++ ++||+|+|...|+
T Consensus 199 ~VLDlGcG~G~~~~~la~~~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~---d~~~~~~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHSPK---IRLTLCDVSAPAVEASRATLAANGVEGEVFAS---NVFSEVKGRFDMIISNPPFH 272 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHCTT---CBCEEEESBHHHHHHHHHHHHHTTCCCEEEEC---STTTTCCSCEEEEEECCCCC
T ss_pred eEEEecCccCHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHhCCCCEEEEc---cccccccCCeeEEEECCCcc
Confidence 6999999999999999988632 1455555 34556555443 43 222222 223344 8999999999987
Q ss_pred ccc--ccCCHHHHHHHhhhhccCCcEEEEEeChh--hHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 330 VES--KRCNMSTIMLEMDRMLRPGGHVYIRDSID--VMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 330 ~~~--~~~~~~~~l~e~~RvLrpgG~~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
+.. +..+...+|.++.|+|||||.+++..+.. ....++..... ++....+ .+.+++.++|.
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~--~~~~~~~------~gf~v~~~~k~ 337 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGF--HEVIAQT------GRFKVYRAIMT 337 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSC--CEEEEEC------SSEEEEEEEC-
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCc--eEEEeeC------CCEEEEEEEeC
Confidence 632 12245799999999999999999986542 23344444432 3333322 25778888763
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=101.34 Aligned_cols=100 Identities=20% Similarity=0.169 Sum_probs=65.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-CceEEeC----CccchHHHHHHHHHHcCCC-cEEEec-cccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-NVITMSI----APKDVHENQIQFALERGAP-AMVAAF-ATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-~v~~vdi----~~~~~~~a~~~~a~~~~~~-~~~~~~-d~~~lp~~~~sfDlI~s~ 81 (402)
.++.+|||+|||+|.++..++++ .|+++|+ ++.++.... ....+.+ ..+... |+..+| .++||+|+|.
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd 155 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCD 155 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEEC
Confidence 45679999999999999999876 7999998 443221100 0011112 234555 555544 5789999986
Q ss_pred Cccc--ccccChH---HHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCRI--NWTRDDG---ILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~--~~~~d~~---~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... ++..+.. .+|.++.++|||||.|++..+
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 5432 2222222 578999999999999999864
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-09 Score=96.18 Aligned_cols=124 Identities=15% Similarity=0.029 Sum_probs=74.2
Q ss_pred cccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHh----cCcccccc-cCCCC-CCCCC-Cc
Q 015704 248 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYD----RGLIGVMH-DWCEP-FDTYP-RT 318 (402)
Q Consensus 248 ~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~~~~-~~~~~-~~~~~-~s 318 (402)
+.+.+|. +|||+|||+|.++.+|++. |.+ ..|.++| ++.|++.+.+ ++.+..+. +.+.+ ..+++ .+
T Consensus 73 l~ikpG~--~VldlG~G~G~~~~~la~~VG~~---G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 73 LPVKEGD--RILYLGIASGTTASHMSDIIGPR---GRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp CCCCTTC--EEEEETCTTSHHHHHHHHHHCTT---CEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCC
T ss_pred cCCCCCC--EEEEecCcCCHHHHHHHHHhCCC---ceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccce
Confidence 3455554 4999999999999999976 322 1344444 3455554433 33322222 22211 12233 79
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------hhHHHHHHHHHhcCceEEEee
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------DVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------~~~~~~~~~~~~~~w~~~~~~ 381 (402)
+|+|++. +.|- .+...++.|+.|+|||||.++|+... .+.....+.++.-.++.....
T Consensus 148 vDvVf~d--~~~~---~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 148 VDGLYAD--VAQP---EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVV 215 (233)
T ss_dssp EEEEEEC--CCCT---THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEe--ccCC---hhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEE
Confidence 9999875 3332 24578999999999999999997421 223333344455566655443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=109.82 Aligned_cols=99 Identities=12% Similarity=0.180 Sum_probs=74.3
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++. .|+++|+++ ++..+. +.+...+. ...+...|+.+++++ ++||+|+|+.+.
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMG 234 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCH
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeCch
Confidence 5679999999999998888764 689999987 664443 44455554 245677787777665 589999987665
Q ss_pred ccccc-ChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTR-DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~-d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+++.. +....+.++.++|||||.+++.
T Consensus 235 ~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 235 YMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 66542 3456778899999999999865
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-09 Score=98.31 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=72.4
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH-cC---CCcEEEeccccC-CCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-RG---APAMVAAFATRR-LPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~-~~---~~~~~~~~d~~~-lp~~~~sfDlI~ 79 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+...+..- .+ ....+...|... ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35689999999999999988865 6889999987775554332211 11 123455666433 333457899999
Q ss_pred ecCcccccccC----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+... .++... ...+++++.++|+|||.+++.+.
T Consensus 154 ~d~~-~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 8643 333221 26899999999999999999853
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-09 Score=99.44 Aligned_cols=106 Identities=12% Similarity=0.143 Sum_probs=73.8
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|.++..|++. +.. ..|+.+| ++.+++.+.++ |+ +..++.... ..++ .+||+|+++
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~D~v~~~ 169 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPE---GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY--EGIEEENVDHVILD 169 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTT---SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG--GCCCCCSEEEEEEC
T ss_pred CEEEEecCCchHHHHHHHHHhCCC---eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh--hccCCCCcCEEEEC
Confidence 35999999999999999988 311 2566666 45667666554 43 333332222 2356 789999985
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcC
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMG 374 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~ 374 (402)
..++..+|.++.|+|||||++++..+. +....+.+.+++..
T Consensus 170 --------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 170 --------LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp --------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred --------CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 335678999999999999999998754 44555666666655
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-09 Score=97.71 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=71.6
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCC-C----CCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPY-P----SQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp~-~----~~sfD 76 (402)
++.+|||+|||+|..+..++.. .++++|+++.++..+. +.....+.. ..+...|... ++. . .++||
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAK-EYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 5679999999999999888764 6899999988776665 334444543 3455555422 221 1 17899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|++... ..+...+++++.++|||||++++..
T Consensus 143 ~v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 143 LIYIDAD----KANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9996532 3356789999999999999999974
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-09 Score=100.53 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=76.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.++.++.. ..+...|+...+. .++||+|+++..
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~-~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p 195 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLC-ENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV 195 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHH-HHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc
Confidence 35679999999999999888753 6999999998886665 445555554 3466777766643 578999998754
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
. +...++.++.+.|+|||.+++++.+
T Consensus 196 ~-----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 196 H-----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp S-----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred c-----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 2 5677899999999999999998653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5e-11 Score=109.12 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=67.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..|++.+. .|+++| ++.+++.+.++ |+ +..++.-.+.++ .+.+||+|++...
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~ 153 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTGM-----RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPP 153 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCC
T ss_pred CEEEECccccCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCC
Confidence 3599999999999999999986 566666 45666655443 43 333332222222 1279999999999
Q ss_pred cccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++|..+. ...+.|+.|+|||||++++..
T Consensus 154 ~~~~~~~---~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 154 WGGPDYA---TAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CSSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred cCCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence 9987653 347889999999999988764
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.9e-09 Score=101.24 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=94.2
Q ss_pred CCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc---Cc---cccc-ccCCCCCCCCCCcccEEE
Q 015704 251 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR---GL---IGVM-HDWCEPFDTYPRTYDLLH 323 (402)
Q Consensus 251 ~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r---g~---~~~~-~~~~~~~~~~~~sfD~v~ 323 (402)
.++..+.|+|+|||.|.++..|+++..++.+ +-.|.+.+++.+.++ +. +..+ ++..++ +. ..+|+++
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~---~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~--~~-~~~D~~~ 249 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLYPGCKI---TVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKD--PL-PEADLYI 249 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHCSSCEE---EEEECHHHHHHHHHHSCC--CCSEEEEESCTTTS--CC-CCCSEEE
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhCCCcee---EeccCHHHHHHHHHhhhhcccCceeeecCccccC--CC-CCceEEE
Confidence 4566778999999999999999998654432 333344556555443 11 2222 222211 12 4689999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--------------------------hhHHHHHHHHHhcCceE
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------------------DVMDELQEIGKAMGWHV 377 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--------------------------~~~~~~~~~~~~~~w~~ 377 (402)
++++|++++|. +...+|+++.|.|||||.++|-|.. ...+..+.++++-.|+.
T Consensus 250 ~~~vlh~~~d~-~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~ 328 (353)
T 4a6d_A 250 LARVLHDWADG-KCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD 328 (353)
T ss_dssp EESSGGGSCHH-HHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred eeeecccCCHH-HHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 99999998863 3468999999999999999998631 11345677888888886
Q ss_pred EEeecCCCCCCceEEEEEEec
Q 015704 378 TLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 378 ~~~~~~~~~~~~~~~l~~~k~ 398 (402)
....... ....+++|+|.
T Consensus 329 v~v~~~~---~~~~~i~ArKg 346 (353)
T 4a6d_A 329 FQFKKTG---AIYDAILARKG 346 (353)
T ss_dssp EEEECCS---SSCEEEEEECC
T ss_pred EEEEEcC---CceEEEEEEec
Confidence 6544322 35678899994
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.8e-09 Score=95.73 Aligned_cols=129 Identities=9% Similarity=0.094 Sum_probs=81.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCC-CCCCCCC-CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWC-EPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~-~~~~~~~-~sfD~v~~~ 325 (402)
+|||+|||+|..+..|++.-. ....|+.+| ++.+++.+.++ |+ +..++.-. +.++.++ ++||+|++.
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLA--DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSC--TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CEEEEcCCchHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 799999999999999987410 012566666 45566555432 33 22333211 2223454 799999987
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHHHHHhcCce----EEEeecCCCCCCc
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGKAMGWH----VTLRETAEGPHAS 389 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~~~~~~~w~----~~~~~~~~~~~~~ 389 (402)
.. ..+...++.++.|+|||||++++.+-. .....++++.+.+++. ..+-.. .
T Consensus 137 ~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~------g 204 (221)
T 3dr5_A 137 VS------PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPL------G 204 (221)
T ss_dssp CC------TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESS------T
T ss_pred Cc------HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeec------c
Confidence 43 234568999999999999999996421 1233566676666665 222222 3
Q ss_pred eEEEEEEecC
Q 015704 390 YRILTADKRL 399 (402)
Q Consensus 390 ~~~l~~~k~~ 399 (402)
..+++++|++
T Consensus 205 dGl~~~~~~~ 214 (221)
T 3dr5_A 205 AGLTVVTKAL 214 (221)
T ss_dssp TCEEEEEECC
T ss_pred chHHHHHHHH
Confidence 4488888876
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=101.30 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=76.6
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH-c---CCCcEEEeccccC-CCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R---GAPAMVAAFATRR-LPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~-~---~~~~~~~~~d~~~-lp~~~~sfDlI~ 79 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..++...... . .....+...|... ++..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 35679999999999999988865 6889999987665444221110 0 1123455556433 233357899999
Q ss_pred ecCccccccc--Ch--HHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHH
Q 015704 80 CSRCRINWTR--DD--GILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 129 (402)
Q Consensus 80 s~~~~~~~~~--d~--~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~ 129 (402)
++.. .++.. .. ..+++++.++|+|||.+++...........+....+.+
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 247 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYA 247 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHH
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHH
Confidence 8642 33321 11 68999999999999999998533333333344444333
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-09 Score=101.32 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=66.9
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH----cCCCcEEEeccccC-CCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE----RGAPAMVAAFATRR-LPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlI~ 79 (402)
.++.+|||||||+|.++..+++. .++++|+++.++..++...... ......+...|... ++..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 35679999999999999998865 6889999887665444222110 01123455556433 333467899999
Q ss_pred ecCcccccccCh----HHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRDD----GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d~----~~~l~e~~r~LkpgG~li~~~ 112 (402)
+... .++.... ..+++++.++|+|||.+++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8643 4433221 588999999999999999985
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-09 Score=92.19 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=64.8
Q ss_pred CCCCeEEEECCccchhHHHHccC-------------CceEEeCCccchHHHHHHHHHHcCCCcEEE-eccccCCC-----
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-------------NVITMSIAPKDVHENQIQFALERGAPAMVA-AFATRRLP----- 69 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-------------~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~-~~d~~~lp----- 69 (402)
.++.+|||+|||+|.++..+++. .++++|+++... .....+. ..|+...+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence 45789999999999988877643 488999997421 0123344 55544332
Q ss_pred ---CCCCCeeEEEecCccc---ccccCh-------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 70 ---YPSQAFDLIHCSRCRI---NWTRDD-------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 70 ---~~~~sfDlI~s~~~~~---~~~~d~-------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++++||+|+|+.... ++..+. ..+++++.++|||||.+++.++
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3456899999864321 222232 4789999999999999999965
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=100.72 Aligned_cols=98 Identities=12% Similarity=0.011 Sum_probs=72.7
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC-CCC-----CCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL-PYP-----SQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~l-p~~-----~~sfD 76 (402)
++.+|||+|||+|..+..+++. .|+++|+++.++..+. +.....+.. ..+..+|.... +.. +++||
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAH-PYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSH-HHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 5679999999999998888753 6999999998887665 334444443 34566665332 221 47899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|++... ..+...+++++.++|||||++++..
T Consensus 139 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 139 FIFIDAD----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEEESC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCC----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 9997543 3356789999999999999999963
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-09 Score=92.86 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=67.2
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCC-----------CCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYP-----------SQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~-----------~~sf 75 (402)
.++.+|||+|||+|.++..++++ .|+++|+++... .....+...|+...+.. .++|
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKV 92 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSE
T ss_pred CCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcc
Confidence 46789999999999999999876 799999997421 11345666776665421 1489
Q ss_pred eEEEecCcccccc----cC-------hHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 76 DLIHCSRCRINWT----RD-------DGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 76 DlI~s~~~~~~~~----~d-------~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
|+|+|+.. .... .+ ...++..+.++|||||.|++..+.
T Consensus 93 D~Vlsd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 93 DDVVSDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp EEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEecCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 99998632 1111 11 146788999999999999998653
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.9e-09 Score=95.23 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC-C-CC---CCCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL-P-YP---SQAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~l-p-~~---~~sfDl 77 (402)
++.+|||+|||+|..+..+++. .++++|+++.++..+. +.....+.. ..+...|.... + ++ .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIAR-SNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 5679999999999999888764 6899999988776655 333344543 34556664332 1 11 267999
Q ss_pred EEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|++... ......+++++.++|||||.+++..
T Consensus 137 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 137 IFIDAD----KQNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp EEECSC----GGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred EEEcCC----cHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 997643 2345789999999999999999874
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=96.57 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=81.2
Q ss_pred ceEEeccccchHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCC-CCCCCCC-----Cc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWC-EPFDTYP-----RT 318 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~-~~~~~~~-----~s 318 (402)
.+|||+|||+|.++..|++. +. .|+.+| ++.+++.+.++ |+ +..++... +.++.++ ++
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGA-----RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTC-----EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCC-----EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence 46999999999999999984 33 566666 45666665543 43 33333221 1122233 69
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCceEEEeec-CCCCCCceEEEEE
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWHVTLRET-AEGPHASYRILTA 395 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~l~~ 395 (402)
||+|++.....+..+ ....+.++ |+|||||++++.+-. ....-++.+...-.|+...... .........+.++
T Consensus 135 fD~V~~d~~~~~~~~---~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~ 210 (221)
T 3u81_A 135 LDMVFLDHWKDRYLP---DTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKA 210 (221)
T ss_dssp CSEEEECSCGGGHHH---HHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEcCCcccchH---HHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEE
Confidence 999999977766542 24677777 999999999998643 1122233333444566665432 1112234556666
Q ss_pred Ee
Q 015704 396 DK 397 (402)
Q Consensus 396 ~k 397 (402)
++
T Consensus 211 ~~ 212 (221)
T 3u81_A 211 IY 212 (221)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-09 Score=103.68 Aligned_cols=94 Identities=17% Similarity=0.062 Sum_probs=65.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.++..|++.+.. ...|+.+| ++.+++.+.++ |+ +..+..-.+..++.+.+||+|++..++
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~ 154 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGE--KGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGV 154 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred CEEEEecCCchHHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCH
Confidence 36999999999999999987541 11355555 45666666554 44 333332222222222799999999999
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+|+. .++.|+|||||.+++....
T Consensus 155 ~~~~---------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 155 DEVP---------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp SCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred HHHH---------HHHHHhcCCCcEEEEEECC
Confidence 9876 4788999999999998654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.86 E-value=9.6e-10 Score=101.32 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=68.6
Q ss_pred ceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhc-------Cc------------------------
Q 015704 256 RNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDR-------GL------------------------ 301 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~r-------g~------------------------ 301 (402)
.+|||+|||+|.++..++.. . ...+|+++| ++.+++.|.++ |+
T Consensus 53 ~~vLD~gcGsG~~~~~la~~~~~---~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 53 VTLWDPCCGSGYLLTVLGLLHRR---SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGG---GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHhcc---CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 46999999999999999876 2 234677777 56676665532 22
Q ss_pred ----cc-------------ccc-cCCCCCCCC------C-CcccEEEEcccccccccc------CCHHHHHHHhhhhccC
Q 015704 302 ----IG-------------VMH-DWCEPFDTY------P-RTYDLLHAAGLFSVESKR------CNMSTIMLEMDRMLRP 350 (402)
Q Consensus 302 ----~~-------------~~~-~~~~~~~~~------~-~sfD~v~~~~~~~~~~~~------~~~~~~l~e~~RvLrp 350 (402)
+. ..+ +..+ .+ + ++||+|+|...+.+..+. .....++.++.|+|||
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 206 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFD---PRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA 206 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTC---GGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred hhhhhhhhccccccccccceeeccccc---ccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC
Confidence 12 222 2222 22 4 589999998777665432 2345899999999999
Q ss_pred CcEEEEEeCh
Q 015704 351 GGHVYIRDSI 360 (402)
Q Consensus 351 gG~~~~~~~~ 360 (402)
||++++.+..
T Consensus 207 gG~l~~~~~~ 216 (250)
T 1o9g_A 207 HAVIAVTDRS 216 (250)
T ss_dssp TCEEEEEESS
T ss_pred CcEEEEeCcc
Confidence 9999997655
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.3e-09 Score=100.63 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=72.8
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++++|||||||+|.++...++. .|+++|.++ +...+ .+.++.++.. ..+...+++.+.++ ++||+|+|....
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQA-REVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG 159 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHH-HHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHH-HHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence 5679999999999888766654 699999986 55444 3566666654 34667788888776 689999974321
Q ss_pred --cccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 --INWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 --~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+........++....|.|||||.++-+
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccchhhhHHHHHHhhCCCCceECCc
Confidence 222224578889999999999998764
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.8e-10 Score=97.10 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=65.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCC-CCCCC---CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEP-FDTYP---RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~-~~~~~---~sfD~v~~~ 325 (402)
.+|||+|||+|.++..++++++ +|+++| ++.+++.+.++ ++ +..++.-... ++.++ .+||+|++.
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGW-----EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC-----EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeCCCcCHHHHHHHHCCC-----eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 3599999999999999999986 377777 46666665543 32 2233221111 11122 389999999
Q ss_pred cccccccccCCHHHHHHHhh--hhccCCcEEEEEeCh
Q 015704 326 GLFSVESKRCNMSTIMLEMD--RMLRPGGHVYIRDSI 360 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~--RvLrpgG~~~~~~~~ 360 (402)
..+. . ..+.++.++. |+|||||.++++...
T Consensus 118 ~~~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 118 PPYA--M---DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CCTT--S---CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCCc--h---hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 8765 2 2356677777 999999999998654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-09 Score=94.76 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=62.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCC-CCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEP-FDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~-~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++.-. ....|+.+| ++.+++.+.++ |+ +..++..... ++..++ ||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAIS--ISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSC--TTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CEEEEEcCCccHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 4699999999999999998721 012555655 45566555433 43 3333322222 233347 99999872
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
. ..+...++.++.|+|||||++++.+
T Consensus 135 ~------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 1 3456899999999999999999965
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-09 Score=100.09 Aligned_cols=126 Identities=17% Similarity=0.279 Sum_probs=85.0
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCCCcc---cEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTY---DLLH 323 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~sf---D~v~ 323 (402)
+|||+|||+|.++..|++. +. +|+++| ++.+++.+.++ |+ +..++ ++.+ +++.+| |+|+
T Consensus 126 ~vLDlG~GsG~~~~~la~~~~~-----~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~---~~~~~f~~~D~Iv 197 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKFSDA-----IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE---PFKEKFASIEMIL 197 (284)
T ss_dssp EEEEESCTTSHHHHHHHHHSSC-----EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG---GGGGGTTTCCEEE
T ss_pred EEEEEeCchhHHHHHHHHCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchh---hcccccCCCCEEE
Confidence 5999999999999999987 44 566666 45666665543 44 33443 2222 234689 9999
Q ss_pred Ec------------cccccccc-----cCCHHHHHHHhh-hhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCC
Q 015704 324 AA------------GLFSVESK-----RCNMSTIMLEMD-RMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 324 ~~------------~~~~~~~~-----~~~~~~~l~e~~-RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 385 (402)
|. .+. |.+. .++...++.++. +.|||||++++.-..+..+.+..+++.. ....+..
T Consensus 198 snPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~----~~~~D~~- 271 (284)
T 1nv8_A 198 SNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT----VFLKDSA- 271 (284)
T ss_dssp ECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC----EEEECTT-
T ss_pred EcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC----CeecccC-
Confidence 96 233 3221 122237899999 9999999999987776677777777665 3333322
Q ss_pred CCCceEEEEEEec
Q 015704 386 PHASYRILTADKR 398 (402)
Q Consensus 386 ~~~~~~~l~~~k~ 398 (402)
+..+++++.++
T Consensus 272 --g~~R~~~~~~k 282 (284)
T 1nv8_A 272 --GKYRFLLLNRR 282 (284)
T ss_dssp --SSEEEEEEECC
T ss_pred --CCceEEEEEEc
Confidence 46788877664
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-09 Score=97.09 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=69.2
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeC-CccchHHHHHHHH----HHcCC------CcEEEeccccC----CC--
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSI-APKDVHENQIQFA----LERGA------PAMVAAFATRR----LP-- 69 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi-~~~~~~~a~~~~a----~~~~~------~~~~~~~d~~~----lp-- 69 (402)
++.+|||+|||+|.++..++.. .|+++|+ ++.++..+..... ...+. ...+...+..+ +.
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 5679999999999998877764 6899999 7877765553321 22222 12233222211 11
Q ss_pred CCCCCeeEEEecCcccccccChHHHHHHHHHhcC---C--CeEEEEEe
Q 015704 70 YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLR---A--GGYFAWAA 112 (402)
Q Consensus 70 ~~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~Lk---p--gG~li~~~ 112 (402)
+++++||+|+++.++++ ..+...+++.+.++|+ | ||.+++..
T Consensus 159 ~~~~~fD~Ii~~dvl~~-~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSF-HQAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HSCSSBSEEEEESCCSC-GGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred ccCCCCCEEEEeCcccC-hHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 03578999999877555 4478899999999999 9 99887764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-09 Score=99.54 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=74.8
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC----CCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY----PSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~----~~~sfDlI 78 (402)
.++.+|||+|||+|..+..+++ ..++++|+++..+..+. +.++..+.. ..+...|...++. ..++||+|
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK-SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHH-HHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 3567999999999999887775 36999999988776554 444445553 4466667665543 25789999
Q ss_pred EecCcccc-----------------cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRCRIN-----------------WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~~~~-----------------~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++...... +......+++++.++|||||.+++++.
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 98632111 112347889999999999999999874
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-09 Score=98.73 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=70.1
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH----cCCCcEEEeccccC-CCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE----RGAPAMVAAFATRR-LPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~----~~~~~~~~~~d~~~-lp~~~~sfDlI~ 79 (402)
.++.+|||+|||+|.++..+++. .++++|+++..+..+....... ......+...|... ++..+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 35689999999999999998765 6889999886664443221110 01123455556433 222357899999
Q ss_pred ecCcccccccC--h--HHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRD--D--GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d--~--~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+... .++... . ..+++++.++|+|||.+++.+.
T Consensus 157 ~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 157 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EECC-CTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 8543 333222 2 6899999999999999999853
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-09 Score=96.52 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=71.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC-CCC--CCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL-PYP--SQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~l-p~~--~~sfDlI~s 80 (402)
++.+|||+|||+|..+..+++. .++++|+++..+..+. +.....+.. ..+...|.... +.. +++||+|++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAH-KHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHH-HHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 5679999999999988877753 6899999987776555 333334442 34555665442 332 578999998
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
... ..+...+++++.++|+|||.+++.+
T Consensus 133 ~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAA----KGQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGG----GSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 643 2367899999999999999999984
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-09 Score=100.81 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=73.4
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH-c----CCCcEEEeccccC-CCCCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R----GAPAMVAAFATRR-LPYPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~-~----~~~~~~~~~d~~~-lp~~~~sfDlI 78 (402)
.++.+|||||||+|.++..+++. .++++|+++.++..+....... . .....+...|... ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 35679999999999999998865 6899999987776555333221 1 1234456666544 34446789999
Q ss_pred EecCccccc---cc--C--hHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINW---TR--D--DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~---~~--d--~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++... .++ .. . ...+++++.++|+|||.+++..
T Consensus 156 i~d~~-~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCC-CcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 98654 444 11 1 2689999999999999999974
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-09 Score=105.50 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=68.5
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..++++ .++++|+ +.++ +.+++. ....+...|+.. +++. ||+|+++.+++
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-----~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh 278 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-----ENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCH 278 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----TTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGG
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHH-----Hhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccc
Confidence 4679999999999999888764 4566677 5433 333221 234566667665 6654 99999999877
Q ss_pred ccccChH--HHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRDDG--ILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d~~--~~l~e~~r~LkpgG~li~~~ 112 (402)
+|. ++. .++++++++|||||.+++..
T Consensus 279 ~~~-d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 279 NWS-DEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp GSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 776 554 89999999999999999984
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-09 Score=102.53 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=59.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc-------C-cccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR-------G-LIGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r-------g-~~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
..|||+|||+|+++..++++ ..|..+++.+.. ..+.++ | -+..+.+ ..++..+| ++||+|+|..
T Consensus 84 ~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~-----~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLG-----TSGHEKPRLVETFGWNLITFKS-KVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTS-TTEEEEEEECCC-----CTTSCCCCCCCCTTGGGEEEEC-SCCGGGCCCCCCSEEEECC
T ss_pred CEEEEeccCCCHHHHHHHHc-CCEEEEECchhh-----hhhhhchhhhhhcCCCeEEEec-cCcHhhCCCCCcCEEEECC
Confidence 46999999999999999998 456777776631 111111 1 1222200 11222244 8999999986
Q ss_pred cccccccc-CCH---HHHHHHhhhhccCCc--EEEEEe
Q 015704 327 LFSVESKR-CNM---STIMLEMDRMLRPGG--HVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~-~~~---~~~l~e~~RvLrpgG--~~~~~~ 358 (402)
. .+..+. -+. ..+|.++.|+||||| .|++..
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 6 332211 000 137999999999999 999874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-09 Score=97.00 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=80.1
Q ss_pred ceEEeccccchHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCC-CCCCCCC----Ccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWC-EPFDTYP----RTY 319 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~-~~~~~~~----~sf 319 (402)
.+|||+|||+|.++..|++. +. .|+++| ++.+++.+.++ |+ +..++.-. +.++.++ .+|
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGG-----RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCCC-----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 46999999999999999987 43 566666 45566555433 44 22332211 1111222 579
Q ss_pred cEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChh------------hHHHHHHHHHh----cCceEEEeecC
Q 015704 320 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID------------VMDELQEIGKA----MGWHVTLRETA 383 (402)
Q Consensus 320 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~------------~~~~~~~~~~~----~~w~~~~~~~~ 383 (402)
|+|++..... ....++.++.|+|||||++++.+... ....++++.+. -+|........
T Consensus 135 D~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 208 (223)
T 3duw_A 135 DFIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV 208 (223)
T ss_dssp SEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred CEEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 9999875422 34689999999999999999875321 12344444443 45665554331
Q ss_pred CCCCCceEEEEEEe
Q 015704 384 EGPHASYRILTADK 397 (402)
Q Consensus 384 ~~~~~~~~~l~~~k 397 (402)
++.+...+++++|
T Consensus 209 -~~~~~dG~~~~~~ 221 (223)
T 3duw_A 209 -GSKGYDGFIMAVV 221 (223)
T ss_dssp -ETTEEEEEEEEEE
T ss_pred -CCCCCCeeEEEEE
Confidence 1223566777775
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-09 Score=99.13 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=67.0
Q ss_pred CCCeEEEECCcc--chhHHHHc-----cCCceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCC----CC--CCCe
Q 015704 10 LLRVVMDAGCGV--ASFGAYLL-----PRNVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLP----YP--SQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~--G~~~~~L~-----~~~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp----~~--~~sf 75 (402)
...+|||||||+ +..+..++ ..+|+++|.++.++..++.... .... ...+...|+.+++ .+ .++|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~-~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLA-STPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHC-CCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhc-cCCCCcEEEEEecccChhhhhccccccccc
Confidence 346899999997 32222222 2389999999988865543222 1111 2346777776642 01 2445
Q ss_pred e-----EEEecCcccccccC---hHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 76 D-----LIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 76 D-----lI~s~~~~~~~~~d---~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
| .|+++.+ +||..+ +..+++++.+.|+|||+|+++...
T Consensus 157 D~~~p~av~~~av-LH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 157 DLTRPVALTVIAI-VHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp CTTSCCEEEEESC-GGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred CcCCcchHHhhhh-HhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 5 4666665 555555 468999999999999999999653
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-09 Score=95.37 Aligned_cols=93 Identities=19% Similarity=0.095 Sum_probs=64.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC--CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP--RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~--~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..|++.+.+ ...|+.+| ++.+++.+.++ |+ +........ ..++ .+||+|++..
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGE--DGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGT--LGYEPLAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGG--GCCGGGCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc--cCCCCCCCeeEEEECC
Confidence 36999999999999999987510 01455555 45666666554 32 222222111 2233 6899999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeChh
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID 361 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~ 361 (402)
+++|+. .++.|+|||||.+++.....
T Consensus 155 ~~~~~~---------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 155 AGPKIP---------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp BBSSCC---------HHHHHTEEEEEEEEEEESSS
T ss_pred chHHHH---------HHHHHHcCCCcEEEEEECCC
Confidence 999876 38899999999999997653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.6e-09 Score=103.56 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=69.8
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|||+|||+|.++..++++ .++++|+ +.++ +.+++. ....+...|+.. +++ .||+|+++.+++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-----~~a~~~-~~v~~~~~d~~~-~~p--~~D~v~~~~~lh 257 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-----ENLSGS-NNLTYVGGDMFT-SIP--NADAVLLKYILH 257 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----TTCCCB-TTEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHH-----hhcccC-CCcEEEeccccC-CCC--CccEEEeehhhc
Confidence 4579999999999999888754 5888888 6444 333222 124466667644 555 399999999888
Q ss_pred ccccChH--HHHHHHHHhcCC---CeEEEEEeC
Q 015704 86 NWTRDDG--ILLLEVNRMLRA---GGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~--~~l~e~~r~Lkp---gG~li~~~~ 113 (402)
+|. +.. .++++++++||| ||.+++...
T Consensus 258 ~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 258 NWT-DKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp GSC-HHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred cCC-HHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 886 554 899999999999 999999854
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-09 Score=113.03 Aligned_cols=101 Identities=13% Similarity=0.058 Sum_probs=77.4
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcC-CCcEEEeccccCC--CCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERG-APAMVAAFATRRL--PYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~-~~~~~~~~d~~~l--p~~~~sfDlI~s~~~~ 84 (402)
++.+|||||||+|.++..|++. .|+|+|+++.++..++ ..+.+.+ ....+.+.+++++ ++.+++||+|+|..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCR-ALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHH-HHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 4679999999999999999987 7999999998887665 4455555 4556777777777 4567899999999998
Q ss_pred cccccChH--HHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDG--ILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~--~~l~e~~r~LkpgG~li~~~ 112 (402)
+|.. ++. ..+..+.+.|+++|..++.+
T Consensus 145 ehv~-~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 145 HHIV-HLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp HHHH-HHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred hcCC-CHHHHHHHHHHHHHhccccceeeEE
Confidence 8876 543 34556777788887766554
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=7.7e-09 Score=98.32 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=70.2
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH-c---CCCcEEEeccccC-CCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE-R---GAPAMVAAFATRR-LPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~-~---~~~~~~~~~d~~~-lp~~~~sfDlI~ 79 (402)
.++.+|||||||+|.++..+++. .++++|+++.++..+......- . .....+...|... ++..+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 35689999999999999999865 6899999987776555332220 1 2233455566433 344467899999
Q ss_pred ecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+... .++... ...+++++.++|+|||.+++..
T Consensus 174 ~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 8643 333211 2468999999999999999985
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.3e-09 Score=100.90 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=82.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC------c----ccccccCCCCCCC-CC-CcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG------L----IGVMHDWCEPFDT-YP-RTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg------~----~~~~~~~~~~~~~-~~-~sfD~v 322 (402)
.+|||+|||.|.++..+++... +..|+.+| ++.+++.+.++- . +..+..-...++. .+ ++||+|
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~---~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRHGT---VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTCTT---CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 5799999999999999998731 22555655 455666655432 1 2222221111111 13 799999
Q ss_pred EEccccccccccCC-HHHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCceEEEeecCCC---CCCceEEE
Q 015704 323 HAAGLFSVESKRCN-MSTIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHVTLRETAEG---PHASYRIL 393 (402)
Q Consensus 323 ~~~~~~~~~~~~~~-~~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~l 393 (402)
++.....+.+.... -..++.++.|+|||||.+++.... .....+.+.+++..+.......... +.+.-.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~ 253 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTL 253 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEE
Confidence 99755433221100 058899999999999999997533 3455666666666565433222222 23455677
Q ss_pred EEEec
Q 015704 394 TADKR 398 (402)
Q Consensus 394 ~~~k~ 398 (402)
+|.|.
T Consensus 254 ~as~~ 258 (304)
T 3bwc_A 254 VCSKK 258 (304)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 78774
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.5e-09 Score=98.95 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=70.8
Q ss_pred eEEeccccchHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhc-----C-c---ccccccCCCCCCCCC-CcccEE
Q 015704 257 NVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDR-----G-L---IGVMHDWCEPFDTYP-RTYDLL 322 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~r-----g-~---~~~~~~~~~~~~~~~-~sfD~v 322 (402)
+|||+|||+|.++..|++. +. .|+.+| ++.+++.+.++ | + +..++...+.. +++ .+||+|
T Consensus 102 ~vLdiG~G~G~~~~~l~~~~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D~v 175 (280)
T 1i9g_A 102 RVLEAGAGSGALTLSLLRAVGPAG-----QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRA 175 (280)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTS-----EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEEE
T ss_pred EEEEEcccccHHHHHHHHHhCCCC-----EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCceeEE
Confidence 5999999999999999985 33 566666 45666665554 4 1 33333222232 355 799999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHh-cCce
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKA-MGWH 376 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~-~~w~ 376 (402)
+++ ..++..+|.++.|+|||||++++..+. +....+...++. ..|.
T Consensus 176 ~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 176 VLD--------MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp EEE--------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred EEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 984 234568999999999999999998765 223333333333 4553
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.82 E-value=8.3e-09 Score=96.54 Aligned_cols=109 Identities=13% Similarity=0.087 Sum_probs=75.9
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
+|||+|||+|.++..|++. +.. ..|+.+| ++.+++.+.++ |+ +..++..... .++ .+||+|+++
T Consensus 115 ~VLDiG~G~G~~~~~la~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~D~V~~~- 188 (277)
T 1o54_A 115 RIIDTGVGSGAMCAVLARAVGSS---GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE--GFDEKDVDALFLD- 188 (277)
T ss_dssp EEEEECCTTSHHHHHHHHHTTTT---CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG--CCSCCSEEEEEEC-
T ss_pred EEEEECCcCCHHHHHHHHHhCCC---cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH--cccCCccCEEEEC-
Confidence 6999999999999999987 311 2566666 45666666554 43 3333322222 255 799999985
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~ 378 (402)
..++..+|.++.|+|||||.+++.++. .....+.+.+++..|...
T Consensus 189 -------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~ 234 (277)
T 1o54_A 189 -------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRI 234 (277)
T ss_dssp -------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEE
T ss_pred -------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcee
Confidence 234578999999999999999999874 345566666666777643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-09 Score=99.25 Aligned_cols=101 Identities=12% Similarity=0.159 Sum_probs=66.9
Q ss_pred CCCeEEEECCccchhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCC---CCC---CCCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRL---PYP---SQAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~l---p~~---~~sfDl 77 (402)
++.+|||+|||+|.++..++. ..++++|+++.++..+. +.+...+.. ..+...|.... +++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK-KNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHH-HHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 467999999999988877764 37999999998887665 344444543 45666665442 344 268999
Q ss_pred EEecCccccccc--------------ChHHHHHHHHHhcCCCeEEEEE
Q 015704 78 IHCSRCRINWTR--------------DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 78 I~s~~~~~~~~~--------------d~~~~l~e~~r~LkpgG~li~~ 111 (402)
|+|+..+++... ....++.+++++|||||.+.+.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 999866554320 1124578899999999988766
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-09 Score=100.96 Aligned_cols=104 Identities=14% Similarity=0.049 Sum_probs=68.2
Q ss_pred CCcceEEeccccc--hHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc--C----cccccccCCCCCC---CCC---C
Q 015704 253 MKLRNVLDMRAGF--GGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR--G----LIGVMHDWCEPFD---TYP---R 317 (402)
Q Consensus 253 ~~~~~vLD~g~g~--G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r--g----~~~~~~~~~~~~~---~~~---~ 317 (402)
..++.|||+|||. +++...++++-. ....|+.+| ++.|+..+..+ + -+..++.-..... ..| +
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~--P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVA--PESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRD 154 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHC--TTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHC--CCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccc
Confidence 4678899999997 334444443210 012677777 57788777654 1 1223332111110 011 4
Q ss_pred ccc-----EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 318 TYD-----LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 318 sfD-----~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|| .|+++.+|+|+.+..++..+|.++.+.|+|||+|++++
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 555 58899999999987668899999999999999999994
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.4e-09 Score=102.71 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|||||||+|.++..++++ .++++|+ +.++ +.+++. ....+...|+.. |++.+ |+|+++.+++
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-----~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVI-----QDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICH 272 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----TTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHH-----Hhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhh
Confidence 4579999999999999888763 5677777 4333 333222 234566777665 66654 9999999888
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|.++ ...+|++++++|||||.+++...
T Consensus 273 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 273 DWSDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp GBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 88743 35899999999999999999854
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-09 Score=106.20 Aligned_cols=119 Identities=10% Similarity=0.106 Sum_probs=75.0
Q ss_pred hcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHh-----------cCc----ccccccCC
Q 015704 247 ALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYD-----------RGL----IGVMHDWC 309 (402)
Q Consensus 247 ~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~-----------rg~----~~~~~~~~ 309 (402)
.+.+..+. .|||+|||+|.++..++.. |+. .|+++| ++.++++|.+ .|+ +..++.-.
T Consensus 168 ~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~----kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 168 EIKMTDDD--LFVDLGSGVGQVVLQVAAATNCK----HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHCCCTTC--EEEEESCTTSHHHHHHHHHCCCS----EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred hcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 33444443 4999999999999998864 431 356665 3455555543 132 44444322
Q ss_pred CCCCCCC---CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhh------HHHHHHHHHhcCce
Q 015704 310 EPFDTYP---RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV------MDELQEIGKAMGWH 376 (402)
Q Consensus 310 ~~~~~~~---~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~------~~~~~~~~~~~~w~ 376 (402)
.. .+|+ .+||+|++.+++ +.+ ++...|.|+.|+|||||.||+++...- .+.+..+...+++.
T Consensus 242 ~~-lp~~d~~~~aDVVf~Nn~~-F~p---dl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~v~ 312 (438)
T 3uwp_A 242 LS-EEWRERIANTSVIFVNNFA-FGP---EVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVV 312 (438)
T ss_dssp TS-HHHHHHHHTCSEEEECCTT-CCH---HHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEEEE
T ss_pred cC-CccccccCCccEEEEcccc-cCc---hHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhheee
Confidence 22 1233 379999998765 333 467899999999999999999975311 12344456666654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=99.60 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=68.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhh----HHhcCc---ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPV----IYDRGL---IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~----~~~rg~---~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.|||+|||+|.++...++.|+. .|.++|.++++.. +...|+ |..++...+.+ .+|..||+|+|--+-.
T Consensus 86 ~VLDvG~GtGiLs~~Aa~aGA~----~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~-~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 86 TVLDVGAGTGILSIFCAQAGAR----RVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETV-ELPEQVDAIVSEWMGY 160 (376)
T ss_dssp EEEEETCTTSHHHHHHHHTTCS----EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCBT
T ss_pred EEEEeCCCccHHHHHHHHhCCC----EEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeee-cCCccccEEEeecccc
Confidence 4999999999998888888863 3444443345544 344466 66777666664 4678999999843333
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.+.....+..++...+|.|||||.++-+
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccchhhhHHHHHHhhCCCCceECCc
Confidence 3443446789999999999999998865
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-09 Score=100.14 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=58.8
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcC-----------------cccccccCCCCC-CCCC
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRG-----------------LIGVMHDWCEPF-DTYP 316 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg-----------------~~~~~~~~~~~~-~~~~ 316 (402)
+|||+|||+|.++..|+.. |... .|+.+| ++.+++.+.++. -+..++.-.+.+ .+++
T Consensus 108 ~VLDiG~G~G~~~~~la~~~g~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 108 TVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp EEEEECCTTSHHHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred EEEEeCCCcCHHHHHHHHHhCCCc---eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 6999999999999999986 4211 455555 345555554421 133333222222 2456
Q ss_pred -CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 317 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 317 -~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
.+||+|+++. .++..+|.++.|+|||||.+++..+.
T Consensus 185 ~~~fD~V~~~~--------~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 185 SLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ---EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCCeeEEEECC--------CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 6899999962 23346899999999999999998765
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=93.42 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=72.1
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCC-C-CcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTY-P-RTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~-~-~sfD~v~~~~ 326 (402)
+|||+|||+|.++..+++.+. .|+.+| ++.+++.+.++ |+ +..++..... .+ + ++||+|+++
T Consensus 94 ~vldiG~G~G~~~~~l~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~v~~~- 165 (248)
T 2yvl_A 94 RVLEFGTGSGALLAVLSEVAG-----EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD--AEVPEGIFHAAFVD- 165 (248)
T ss_dssp EEEEECCTTSHHHHHHHHHSS-----EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT--SCCCTTCBSEEEEC-
T ss_pred EEEEeCCCccHHHHHHHHhCC-----EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh--cccCCCcccEEEEC-
Confidence 699999999999999998854 566666 55666666554 33 2333322221 23 4 699999985
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCce
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWH 376 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~ 376 (402)
..++..+|.++.|+|||||.+++..+. +....+...++.. |.
T Consensus 166 -------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 166 -------VREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp -------SSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred -------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 335678999999999999999999885 3444555554443 44
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-09 Score=105.77 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=65.3
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHh-cCcccccc-cCCCCCCCCCCcccEEEEccccccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYD-RGLIGVMH-DWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~-rg~~~~~~-~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
...+|||+|||+|.++..|+++..++.++ ..|.+.+++.+.+ .+ +..+. +..+ ++| +||+|+++++|+|+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~---~~D~~~~~~~a~~~~~-v~~~~~d~~~---~~~-~~D~v~~~~vlh~~ 264 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCT---VFDQPQVVGNLTGNEN-LNFVGGDMFK---SIP-SADAVLLKWVLHDW 264 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEE---EEECHHHHSSCCCCSS-EEEEECCTTT---CCC-CCSEEEEESCGGGS
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEE---EeccHHHHhhcccCCC-cEEEeCccCC---CCC-CceEEEEcccccCC
Confidence 44679999999999999999885433333 2222223332222 12 22222 2222 345 59999999999998
Q ss_pred cccCCHHHHHHHhhhhccC---CcEEEEEe
Q 015704 332 SKRCNMSTIMLEMDRMLRP---GGHVYIRD 358 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrp---gG~~~~~~ 358 (402)
.+. ....+|+++.|+||| ||+++|.|
T Consensus 265 ~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 265 NDE-QSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp CHH-HHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred CHH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 753 234999999999999 99999975
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-09 Score=95.61 Aligned_cols=126 Identities=10% Similarity=0.130 Sum_probs=79.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
.+|||+|||+|.++..++.+++ ..|+++| ++.+++.+.++ |+ +..++.-.+.+.+++ .+||+|++...
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~----~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA----AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC----SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC----CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 3599999999999999888864 1677777 56777766543 33 333433222222334 79999999866
Q ss_pred cccccccCCHHHHHHHhhh--hccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 328 FSVESKRCNMSTIMLEMDR--MLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~~R--vLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
|. . .....++.++.+ +|||||.++++...... +.. ..-.|+...... + +...+.+.+|
T Consensus 132 ~~-~---~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~--~~~--~~~~~~~~~~~~-~---g~~~~~~~~~ 191 (202)
T 2fpo_A 132 FR-R---GLLEETINLLEDNGWLADEALIYVESEVENG--LPT--VPANWSLHREKV-A---GQVAYRLYQR 191 (202)
T ss_dssp SS-T---TTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC--SCC--CCTTEEEEEEEE-E---TTEEEEEEEE
T ss_pred CC-C---CcHHHHHHHHHhcCccCCCcEEEEEECCCcc--ccc--cCCcceEEeeec-c---CCEEEEEEEE
Confidence 43 1 245788888865 69999999998765221 100 013577554443 2 2455555554
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.80 E-value=6e-09 Score=99.11 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=67.5
Q ss_pred CeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--CCCCCCeeEEEecCccc
Q 015704 12 RVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--PYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l--p~~~~sfDlI~s~~~~~ 85 (402)
.+|||||||+|.++..+++. .++++|+++.++..++..+.........+...|.... .+++++||+|++... .
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~-~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVF-A 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCS-T
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCC-C
Confidence 49999999999999988762 6788888876654333211110011234566664433 244679999997533 3
Q ss_pred cccc--C--hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTR--D--DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~--d--~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+... . ...++++++++|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3221 1 26899999999999999999863
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.80 E-value=9.4e-10 Score=95.56 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=65.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCC-CCCCCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEP-FDTYPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~-~~~~~~sfD~v~~~~ 326 (402)
.+|||+|||+|.++..+++++. ..|+++| ++.+++.+.++ |+ +..++.-... ++.++.+||+|++..
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGM----SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC----CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHcCC----CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 3699999999999999998853 2567776 45666665543 32 2233221122 122346899999987
Q ss_pred ccccccccCCHHHHHHHhh--hhccCCcEEEEEeCh
Q 015704 327 LFSVESKRCNMSTIMLEMD--RMLRPGGHVYIRDSI 360 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~--RvLrpgG~~~~~~~~ 360 (402)
.+.+. ....++..+. |+|||||++++....
T Consensus 109 ~~~~~----~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAKE----TIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SSHHH----HHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCcc----hHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 66321 2356777776 999999999998654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.8e-08 Score=97.80 Aligned_cols=134 Identities=17% Similarity=0.129 Sum_probs=86.6
Q ss_pred ceEEeccccchHHHHHHhhcC---CCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQK---FDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~---~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~ 325 (402)
..|||+|||+|+++..++..+ . .|+++| ++.+++.|.++ |+ +.....-...++....+||+|+|.
T Consensus 205 ~~vLD~gcGsG~~~ie~a~~~~~~~-----~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~n 279 (354)
T 3tma_A 205 MRVLDPFTGSGTIALEAASTLGPTS-----PVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILAN 279 (354)
T ss_dssp CCEEESSCTTSHHHHHHHHHHCTTS-----CEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEEC
T ss_pred CEEEeCCCCcCHHHHHHHHhhCCCc-----eEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEEC
Confidence 459999999999999998864 4 455555 45566555443 53 334443333333223689999996
Q ss_pred ccccc-cccc----CCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 326 GLFSV-ESKR----CNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 326 ~~~~~-~~~~----~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
--+.. +.+. .....++.++.|+|||||.+++..+. ...++.+.+ ..|+.......++..-.-.+++++|
T Consensus 280 pPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~--~~~~~~~~~-~g~~~~~~~~l~~g~l~~~i~vl~r 353 (354)
T 3tma_A 280 PPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR--PALLKRALP-PGFALRHARVVEQGGVYPRVFVLEK 353 (354)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC--HHHHHHHCC-TTEEEEEEEECCBTTBCCEEEEEEE
T ss_pred CCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC--HHHHHHHhh-cCcEEEEEEEEEeCCEEEEEEEEEc
Confidence 44322 1110 11258999999999999999999887 344667777 8898877665544334445666655
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-08 Score=99.35 Aligned_cols=109 Identities=9% Similarity=0.022 Sum_probs=77.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CCC---CCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPY---PSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~-lp~---~~~sfDlI 78 (402)
.++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.++.++.. ..+...|+.. ++. ...+||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~-~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSL-AHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHH-HHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 35679999999999999988864 6999999999887766 455555553 4466666543 221 24589999
Q ss_pred EecCccc----ccccC----hHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 79 HCSRCRI----NWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 79 ~s~~~~~----~~~~d----~~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
++..... ....+ ...++.++.++|+|||.+++++.+....
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~ 337 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT 337 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC
Confidence 9865543 12222 2457788899999999999997544433
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-09 Score=96.32 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=70.9
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CCC------CCCCe
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LPY------PSQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp~------~~~sf 75 (402)
++.+|||+|||+|..+..++. ..++++|+++.++..+. +...+.+.. ..+..+|... ++. ++++|
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~-~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL-PVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 467999999999998887764 27899999998776665 333344442 3355555433 231 15789
Q ss_pred eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 76 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+|++... ..+...+++++.++|||||++++..
T Consensus 158 D~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99997532 3356889999999999999999873
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-09 Score=99.49 Aligned_cols=119 Identities=16% Similarity=0.096 Sum_probs=74.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCCCcccEEEEc----
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYPRTYDLLHAA---- 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~~sfD~v~~~---- 325 (402)
+|||+|||+|+++.+|++... ....|+++| ++.+++.+.++ |+ +..++.-...++.++++||+|++.
T Consensus 121 ~VLDlg~G~G~~t~~la~~~~--~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 121 IVADMAAAPGGKTSYLAQLMR--NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT 198 (315)
T ss_dssp EEEECCSSCSHHHHHHHHHTT--TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred EEEEeCCCCCHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence 599999999999999997521 012567777 45666655554 44 334433333333345799999984
Q ss_pred --ccccccccc---CC----------HHHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHhcCceE
Q 015704 326 --GLFSVESKR---CN----------MSTIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKAMGWHV 377 (402)
Q Consensus 326 --~~~~~~~~~---~~----------~~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~~~w~~ 377 (402)
.++.+.++. -. ...+|.++.|+|||||+++++.- .+-...++.++++..++.
T Consensus 199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~ 269 (315)
T 1ixk_A 199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL 269 (315)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence 333332210 00 14899999999999999999742 233455677777665554
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-09 Score=101.53 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=70.4
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|||||||+|.++..++++ .++++|+ +.++ +.+++. ....+...|+.. |++.+ |+|++..+++
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-----~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh 270 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVI-----SEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILH 270 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----TTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHH-----Hhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhc
Confidence 4579999999999999888763 5677787 4332 323222 234567778766 77754 9999999988
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|.++ ...+|++++++|||||.+++...
T Consensus 271 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 271 DWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp GSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 88743 46899999999999999999854
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=93.52 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=70.7
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEecccc----CCCCCC--CCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATR----RLPYPS--QAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~----~lp~~~--~sfD 76 (402)
++.+|||+|||+|..+..++.. .++++|+++..+..+... ....+.. ..+...+.. .++..+ ++||
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKY-WQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH-HHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 5679999999999999888764 689999998777655533 3333442 334555532 233333 7899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|++... ..+...+++++.++|+|||.+++..
T Consensus 151 ~V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 151 LIFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEECSC----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEEECCC----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 9997643 3356789999999999999999974
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-09 Score=95.46 Aligned_cols=94 Identities=15% Similarity=0.220 Sum_probs=65.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCC-CCC--CCcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPF-DTY--PRTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~-~~~--~~sfD~v~~ 324 (402)
.+|||+|||+|.++..|++... ...|+.+| ++.+++.+.++ |+ +..+....... +.. +++||+|++
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALP---EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCT---TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 3699999999999999998721 12666666 45666666554 43 33333222221 222 468999999
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
....+ +...+|.++.|+|||||.+++.+
T Consensus 133 ~~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 86543 46799999999999999999985
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.8e-09 Score=96.80 Aligned_cols=101 Identities=15% Similarity=0.056 Sum_probs=69.2
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHH-----------cCCCcEEEeccccC-CCCCCC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALE-----------RGAPAMVAAFATRR-LPYPSQ 73 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~-----------~~~~~~~~~~d~~~-lp~~~~ 73 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+.... .. ......+...|... ++. ++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 35679999999999999988865 6899999987765554322 10 11123455555432 222 57
Q ss_pred CeeEEEecCccccccc--C--hHHHHHHHHHhcCCCeEEEEEe
Q 015704 74 AFDLIHCSRCRINWTR--D--DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 74 sfDlI~s~~~~~~~~~--d--~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+||+|++... .++.. . ...+++++.++|+|||.+++.+
T Consensus 152 ~fD~Ii~d~~-~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 152 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCC-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8999998644 33321 1 2678999999999999999975
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.78 E-value=9.6e-09 Score=101.29 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=78.0
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCC----CCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPY----PSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~----~~~sfDlI~ 79 (402)
.++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+..++.. ..+...|+..... ..++||+|+
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~-~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 36789999999999999888865 6999999998876665 444455553 3466666544321 256899999
Q ss_pred ecCcccccc--------cChHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 80 CSRCRINWT--------RDDGILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 80 s~~~~~~~~--------~d~~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
+........ .+...++.++.++|+|||.+++++......
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 341 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD 341 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC
Confidence 875432211 234678999999999999999987543333
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=95.20 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=71.7
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCe---eEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAF---DLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sf---DlI~s~ 81 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+.. ..+...|... +++ ++| |+|+|+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~-~n~~~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEFLE-PFK-EKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESSTTG-GGG-GGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECcchh-hcc-cccCCCCEEEEc
Confidence 4579999999999988877643 7999999998886665 444455554 4566666544 223 578 999998
Q ss_pred Ccccccc------------------cChHHHHHHHH-HhcCCCeEEEEEe
Q 015704 82 RCRINWT------------------RDDGILLLEVN-RMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~------------------~d~~~~l~e~~-r~LkpgG~li~~~ 112 (402)
....... .+...+++++. +.|+|||.+++..
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 5433211 11127899999 9999999999984
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-08 Score=90.14 Aligned_cols=98 Identities=9% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC------------
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP------------ 69 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp------------ 69 (402)
++.+|||+|||+|..+..+++. .++++|+++..+..+. +.....+.. ..+...|... ++
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVAR-KYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 5679999999999988877643 6899999987776555 333334443 3345555322 12
Q ss_pred --CCC--CCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 70 --YPS--QAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 70 --~~~--~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|++ ++||+|++... ..+...+++++.++|+|||.+++..
T Consensus 139 ~~f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 78999997643 3345789999999999999999974
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.8e-09 Score=101.11 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=77.2
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC----CCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY----PSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~----~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.+..++.. ..+...|+..... .+++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 4679999999999999888764 7999999998876665 444455554 4466666544321 257899999865
Q ss_pred cccccc--------cChHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 83 CRINWT--------RDDGILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 83 ~~~~~~--------~d~~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
..+... .+...++.++.++|+|||.+++++.+....
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 331 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT 331 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC
Confidence 432221 234578999999999999999997544333
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-08 Score=88.41 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=63.3
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+ +++.....+...|+..+| ++||+|+++..+++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a-----~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETA-----KRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGS 122 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHH-----HHHCTTSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHH-----HHhcCCCEEEECcHHHCC---CCeeEEEECCCchh
Confidence 5679999999999999888765 589999987665433 333224556777777764 68999999988666
Q ss_pred cccC-hHHHHHHHHHhcCCCeEEEEE
Q 015704 87 WTRD-DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 87 ~~~d-~~~~l~e~~r~LkpgG~li~~ 111 (402)
+... ...+++++.+++ |+ +++.
T Consensus 123 ~~~~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp -----CHHHHHHHHHHE--EE-EEEE
T ss_pred ccCchhHHHHHHHHHhc--Cc-EEEE
Confidence 6532 357899999998 45 4444
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=93.14 Aligned_cols=105 Identities=13% Similarity=0.023 Sum_probs=75.3
Q ss_pred ccccCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeE
Q 015704 4 INTWIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDL 77 (402)
Q Consensus 4 i~~~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDl 77 (402)
|..+-.++.+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+.. ..+...|......++++||+
T Consensus 15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~ 93 (244)
T 3gnl_A 15 VASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQ-KQVRSSGLTEQIDVRKGNGLAVIEKKDAIDT 93 (244)
T ss_dssp HHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred HHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEecchhhccCccccccE
Confidence 3445556789999999999999988875 5899999998887766 445556654 34566665444434346999
Q ss_pred EEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.....- .-...++.+..+.|+++|+|+++.
T Consensus 94 IviagmGg---~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 94 IVIAGMGG---TLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp EEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred EEEeCCch---HHHHHHHHHHHHHhCCCCEEEEEc
Confidence 88543211 113678889999999999999994
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=92.18 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=75.6
Q ss_pred ccccCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeE
Q 015704 4 INTWIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDL 77 (402)
Q Consensus 4 i~~~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDl 77 (402)
+..+-.++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...+.. ..+..+|......+.+.||+
T Consensus 15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~-~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~ 93 (230)
T 3lec_A 15 VANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSAL-KNVSEHGLTSKIDVRLANGLSAFEEADNIDT 93 (230)
T ss_dssp HHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred HHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhhccccccccCE
Confidence 3344456789999999999999988875 5899999998887766 444555654 34566665554444447999
Q ss_pred EEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.....- .-...++.+..+.|+++|+|+++.
T Consensus 94 IviaGmGg---~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 94 ITICGMGG---RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp EEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred EEEeCCch---HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 87543211 123678888999999999999994
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.5e-10 Score=114.84 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=70.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCc--ccccccCCCCCC-CCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGL--IGVMHDWCEPFD-TYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~--~~~~~~~~~~~~-~~~-~sfD~v~~~~ 326 (402)
-+|||+|||.|.++..||.+|+ +|+++| ++.++++|. ++|. +...+...|.+. .++ ++||+|.|..
T Consensus 68 ~~vLDvGCG~G~~~~~la~~ga-----~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 68 LNVLDLGCAQGFFSLSLASKGA-----TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CeEEEECCCCcHHHHHHHhCCC-----EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 4699999999999999999998 677777 566676554 4553 444444445542 344 7999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+|+|+.+...+ ..+..+.+.|+++|..++-
T Consensus 143 ~~ehv~~~~~~-~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 143 VFHHIVHLHGI-DEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp CHHHHHHHHCH-HHHHHHHHHHHHHSSEEEE
T ss_pred chhcCCCHHHH-HHHHHHHHHhccccceeeE
Confidence 99999864332 3355677888888877665
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=93.53 Aligned_cols=94 Identities=18% Similarity=0.095 Sum_probs=66.2
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHH---H-cCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFAL---E-RGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~---~-~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++.+|||||||+|.++..+++. .++++|+++.++..+...+.. . ......+...|..... ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 5679999999999999888764 688888887665443321110 0 1112345555655443 7899999762
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.++..+++++.++|+|||.+++..
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEc
Confidence 256679999999999999999974
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.3e-09 Score=105.05 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=68.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----Cc---ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----GL---IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
..|||+|||+|.++..+++.+. ..|+++|.+.+++.+.++ |+ +..++...+.+ ++|.+||+|+|..++
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~----~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGA----RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVDIIISEPMG 234 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTC----SEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCH
T ss_pred CEEEEecCcccHHHHHHHHcCC----CEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhC-ccCCCeEEEEEeCch
Confidence 4699999999999999998753 145555532255544433 54 44555433332 356799999998887
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.|+.+. ++...+.++.|+|||||++++.
T Consensus 235 ~~~~~e-~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 235 YMLFNE-RMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHHTCH-HHHHHHHHGGGGEEEEEEEESC
T ss_pred HhcCcH-HHHHHHHHHHHhcCCCCEEEEE
Confidence 887642 4567888999999999999964
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.3e-09 Score=96.95 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=73.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCC--CCChhhHHhc---------Cc-------cccc-ccCCCCCCCC-
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG--FNTLPVIYDR---------GL-------IGVM-HDWCEPFDTY- 315 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~--~~~~~~~~~r---------g~-------~~~~-~~~~~~~~~~- 315 (402)
.+|||+|||+|.++..++..|+. .|+++|. +.+++.+.++ |+ +... .+|......+
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~~----~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGAD----QVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTCS----EEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred CeEEEecccccHHHHHHHHcCCC----EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 36999999999999999988751 3344432 2444443332 21 1121 2344322222
Q ss_pred ---C-CcccEEEEccccccccccCCHHHHHHHhhhhcc---C--CcEEEEEeCh------hhHHHHHHHHHhcC-ceEEE
Q 015704 316 ---P-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLR---P--GGHVYIRDSI------DVMDELQEIGKAMG-WHVTL 379 (402)
Q Consensus 316 ---~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLr---p--gG~~~~~~~~------~~~~~~~~~~~~~~-w~~~~ 379 (402)
+ .+||+|++++++.|.. ++..++.++.|+|| | ||.+++.-.. +....+.+.+++.. |++..
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEE
T ss_pred hhccCCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEE
Confidence 3 7999999999998855 36899999999999 9 9976654221 11233444556556 76655
Q ss_pred e
Q 015704 380 R 380 (402)
Q Consensus 380 ~ 380 (402)
.
T Consensus 234 ~ 234 (281)
T 3bzb_A 234 W 234 (281)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.8e-09 Score=93.83 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=79.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCC-CCCC-------------
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWC-EPFD------------- 313 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~-~~~~------------- 313 (402)
.+|||+|||+|.++..|++... ....|+.+| ++.+++.+.++ |+ +..+.... +.++
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALP--EDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSC--TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CEEEEEeCCCCHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 3699999999999999998721 012555555 45555555443 43 22222111 1011
Q ss_pred CC--C-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC------------hhhHHHHHHH----HHhcC
Q 015704 314 TY--P-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------IDVMDELQEI----GKAMG 374 (402)
Q Consensus 314 ~~--~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~------------~~~~~~~~~~----~~~~~ 374 (402)
.| + ++||+|++..... +...++.++.|+|||||++++.+- ......++.+ ...-+
T Consensus 140 ~f~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDADKE------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSL 213 (239)
T ss_dssp TTCCSTTCEEEEEECSCGG------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTT
T ss_pred cccCCCCCcCEEEEeCCHH------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCC
Confidence 12 2 6899999984332 346899999999999999999861 1223334443 34455
Q ss_pred ceEEEeecCCCCCCceEEEEEEecC
Q 015704 375 WHVTLRETAEGPHASYRILTADKRL 399 (402)
Q Consensus 375 w~~~~~~~~~~~~~~~~~l~~~k~~ 399 (402)
+.+......+| +.+++|.+
T Consensus 214 ~~~~~~p~~~g------~~~~~~~~ 232 (239)
T 2hnk_A 214 VDVSLVPIADG------VSLVRKRL 232 (239)
T ss_dssp EEEEEECSTTC------EEEEEECC
T ss_pred eEEEEEEcCCc------eEeeeehh
Confidence 66665554333 88888865
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.76 E-value=8e-08 Score=85.41 Aligned_cols=96 Identities=16% Similarity=0.051 Sum_probs=69.1
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+....+...|...++ ++||+|+++..++.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 5679999999999999888765 5899999987765554 233333444556777777664 48999999877555
Q ss_pred cccC-hHHHHHHHHHhcCCCeEEEEE
Q 015704 87 WTRD-DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 87 ~~~d-~~~~l~e~~r~LkpgG~li~~ 111 (402)
.... ...+++++.+++ ||.+++.
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEE
Confidence 5422 367899999998 6655444
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=99.60 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=78.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC---CcEEEeccccCCCC----CCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA---PAMVAAFATRRLPY----PSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~---~~~~~~~d~~~lp~----~~~sfDlI 78 (402)
.++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+..++. ...+...|+..... ..++||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 35679999999999999888765 6899999998876665 44455565 34566666544321 14689999
Q ss_pred EecCccccc--------ccChHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 015704 79 HCSRCRINW--------TRDDGILLLEVNRMLRAGGYFAWAAQPVYKH 118 (402)
Q Consensus 79 ~s~~~~~~~--------~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~ 118 (402)
++....... ..+...++.++.+.|+|||++++++.+....
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 345 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT 345 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC
Confidence 987543221 1245688999999999999999997554444
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=92.84 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=70.5
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCC-C-CC--C--CCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRL-P-YP--S--QAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~l-p-~~--~--~sfD 76 (402)
++.+|||+|||+|..+..+++. .++++|+++.++..+. +.....+. ...+...|.... + ++ . ++||
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR-PLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 5679999999999999888763 6899999998776665 33334444 234555554322 1 11 1 6899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|++... ..+...+++++.++|+|||.+++..
T Consensus 148 ~v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9998643 3345789999999999999999964
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-08 Score=91.54 Aligned_cols=101 Identities=18% Similarity=0.055 Sum_probs=74.1
Q ss_pred CCCCeEEEECCccchhHHHHccC-CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
.++.+|||+|||+|.++..+... .++++|+++.++.-+. +.+...+.+..+...|....+.+ ++||+|+++-+++++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar-~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~L 181 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVIT-PFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPLL 181 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHH-HHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHHh
Confidence 46789999999999999877643 8999999998876554 34445566666777776666655 589999988775555
Q ss_pred ccChHHHHHHHHHhcCCCeEEEEE
Q 015704 88 TRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 88 ~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.........++.+.|+++|.++-.
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred hhhchhhHHHHHHHhcCCCEEEEc
Confidence 433334444888899999877654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.2e-09 Score=101.39 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=74.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCCCCCCCC----CCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWCEPFDTY----PRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~~~~~~~----~~sfD~v 322 (402)
.+|||+|||+|.|+..++..|+ .|+.+| ++.+++.+.++ |+ +..++.-+..+... .++||+|
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga-----~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA-----EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CcEEEcccccCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 3699999999999999999986 677777 56667655543 33 22332222121111 3589999
Q ss_pred EEccc----------cccccccCCHHHHHHHhhhhccCCcEEEEEeCh-------hhHHHHHHHHHhcCceEEE
Q 015704 323 HAAGL----------FSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-------DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 323 ~~~~~----------~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-------~~~~~~~~~~~~~~w~~~~ 379 (402)
++.-- +.+.. +...++.++.|+|||||++++.... ...+.+++.++....++..
T Consensus 230 i~dPP~~~~~~~~~~~~~~~---~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~~ 300 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFD---HLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVAS 300 (332)
T ss_dssp EECCCSEEECTTCCEEEHHH---HHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEE
T ss_pred EECCccccCCchHHHHHHHH---HHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 99421 12222 3568999999999999998876421 2344555556677776653
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-08 Score=99.19 Aligned_cols=104 Identities=18% Similarity=0.126 Sum_probs=75.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--CCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--YPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|..+..+++. .++++|+++..+..+. +.+...+....+...|...++ +++++||+|++..
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~-~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45679999999999988888753 6999999998886655 444455655666777776665 5567899999632
Q ss_pred c-----ccccccCh----------------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 C-----RINWTRDD----------------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~-----~~~~~~d~----------------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
. .++..++. ..++.++.++|||||.+++++.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 11111111 3779999999999999999974
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-08 Score=99.83 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=73.7
Q ss_pred CCCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCC--CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLP--YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp--~~~~sfDlI~s 80 (402)
.++.+|||+|||+|..+..+++ ..++++|+++..+..+. +.+...+.. ..+...|...++ +++++||+|++
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLK-DFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 4567999999999998888775 26899999987775554 444445553 446666776665 55578999996
Q ss_pred cC-----cccccccCh----------------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SR-----CRINWTRDD----------------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~-----~~~~~~~d~----------------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.. ..++..++. ..++.++.++|||||.+++++.
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 21 111111111 4689999999999999999974
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=95.64 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=73.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|.|+..+++++. ...|+++| ++.+++.+.+ .|+ +..+..-.+.+ +.+.+||+|++....
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~---~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSK---PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC---CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS
T ss_pred CEEEEecCcCCHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc
Confidence 3699999999999999998742 12455555 3455554443 243 33444333443 335699999988432
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEEeChh-------hHHHHHHHHHhcCceEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID-------VMDELQEIGKAMGWHVT 378 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~-------~~~~~~~~~~~~~w~~~ 378 (402)
+...++.++.|+|||||.++++.... ..+.++.+.+.+.+++.
T Consensus 197 -------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 -------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred -------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 45789999999999999999996432 23445555555555554
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.1e-09 Score=93.88 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=64.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCC-CCC--C-CCcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEP-FDT--Y-PRTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~-~~~--~-~~sfD~v~ 323 (402)
.+|||+|||+|.++..+++++. ..|+++| ++.+++.+.++ |+ +..++.-... ++. + +.+||+|+
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGM----DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEeCCccCHHHHHHHHcCC----CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3699999999999999888763 2566666 45566555433 32 3333322111 111 1 37999999
Q ss_pred EccccccccccCCHHHHHHHh--hhhccCCcEEEEEeCh
Q 015704 324 AAGLFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDSI 360 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~--~RvLrpgG~~~~~~~~ 360 (402)
+...+.. ......+.++ .|+|||||++++....
T Consensus 122 ~~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp ECCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred ECCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 9877542 2346777777 9999999999998654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-08 Score=97.43 Aligned_cols=100 Identities=16% Similarity=0.043 Sum_probs=72.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|.++..++.. .++|+|+++.++..+. +.+...+. ...+...|+..+++++++||+|+++.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~-~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAE-MNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHH-HHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45679999999999998887754 6899999998887666 44445555 45677888888888888999999986
Q ss_pred ccccccc------C-hHHHHHHHHHhcCCCeEEEEE
Q 015704 83 CRINWTR------D-DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 83 ~~~~~~~------d-~~~~l~e~~r~LkpgG~li~~ 111 (402)
.+..... + ...+++++.++| ||.+++.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i 328 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFI 328 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence 5333221 1 156788999999 4444444
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-08 Score=90.26 Aligned_cols=100 Identities=11% Similarity=-0.005 Sum_probs=73.6
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
..+.+|||||||+|-++..+... .|+++|+++.++.-+. .++...+....+...|...-+ +.++||+++++-++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~-~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti 208 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD-EALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTL 208 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH-HHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHH
Confidence 45789999999999988877554 7999999998776554 444555777666666643333 56889999988775
Q ss_pred cccccChH-HHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTRDDG-ILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~d~~-~~l~e~~r~LkpgG~li~~ 111 (402)
+++..... ..+ ++...|+|+|.++--
T Consensus 209 ~~Le~q~kg~g~-~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 209 PCLETQQRGSGW-EVIDIVNSPNIVVTF 235 (281)
T ss_dssp HHHHHHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred HHhhhhhhHHHH-HHHHHhCCCCEEEec
Confidence 55543333 445 999999999988765
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-08 Score=89.93 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=73.5
Q ss_pred cccCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccc-cCCCCCCCCeeE
Q 015704 5 NTWIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFAT-RRLPYPSQAFDL 77 (402)
Q Consensus 5 ~~~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~-~~lp~~~~sfDl 77 (402)
..+-.++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..+.. ..+...|. +.++. .+.||+
T Consensus 10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~ 87 (225)
T 3kr9_A 10 ASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV-KNVEAHGLKEKIQVRLANGLAAFEE-TDQVSV 87 (225)
T ss_dssp HTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCCG-GGCCCE
T ss_pred HHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEECchhhhccc-CcCCCE
Confidence 344456789999999999999888865 6899999998887665 555556664 34555554 33332 126999
Q ss_pred EEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.... ..+ ...++.+..+.|+|+|+|+++.
T Consensus 88 IviaG~----Gg~~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 88 ITIAGM----GGRLIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp EEEEEE----CHHHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred EEEcCC----ChHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 886432 112 3678999999999999999984
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-08 Score=107.06 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=77.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC-CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR-LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~-lp~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.+..++.. ..+...|+.. ++...++||+|++..
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~-~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAE-RNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 5679999999999999887754 5999999998887666 444455554 4566666544 344457899999876
Q ss_pred cccc----------cccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 83 CRIN----------WTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 83 ~~~~----------~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
..+. ...+...++.++.++|+|||.+++++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4322 2223467899999999999999999743
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-08 Score=101.26 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=73.9
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-CCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-YPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp-~~~~sfDlI~s~~ 82 (402)
.++.+|||+|||+|..+..+++. .|+++|+++.++..+. +.+...+....+...|...++ +.+++||+|++..
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~-~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL-ENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 36789999999999988888742 6899999998776655 444455655556666765554 2457899999632
Q ss_pred cc-----c--------ccccC--------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CR-----I--------NWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~-----~--------~~~~d--------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.. + .|..+ ...++.++.++|||||.++++|-
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 11 1 11111 15689999999999999999974
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-08 Score=98.84 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=68.4
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|||+|||+|.++..++++ .++++|+ +.++ +.+++. ....+...|+.. +++ +||+|+++.+++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-----~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh 262 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVV-----GNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLH 262 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHH-----SSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHH-----hhcccC-CCcEEEeCccCC-CCC--CceEEEEccccc
Confidence 4579999999999999888764 4677787 4333 222221 124466667655 655 499999998877
Q ss_pred ccccChH--HHHHHHHHhcCC---CeEEEEEeC
Q 015704 86 NWTRDDG--ILLLEVNRMLRA---GGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~--~~l~e~~r~Lkp---gG~li~~~~ 113 (402)
+|. +.. .++++++++|+| ||.+++...
T Consensus 263 ~~~-d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 263 DWN-DEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp GSC-HHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred CCC-HHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 776 544 999999999999 999999753
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.4e-08 Score=93.86 Aligned_cols=137 Identities=15% Similarity=0.054 Sum_probs=78.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc-----Cc-----------ccccccCCCC-CCCCCC
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR-----GL-----------IGVMHDWCEP-FDTYPR 317 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r-----g~-----------~~~~~~~~~~-~~~~~~ 317 (402)
.+|||+|||.|.++..+++.+. ..|+.+| ++.+++.+.++ ++ +..+..-... +.. ++
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~----~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDV----DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCC----SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CeEEEEcCCcCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 5799999999999999998832 2455555 45566655543 11 2222211111 111 57
Q ss_pred cccEEEEccccccccccCC--HHHHHHHhhhhccCCcEEEEEeC-----hhhHHHHHHHHHhcCceEEEeecCCCC-CCc
Q 015704 318 TYDLLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTLRETAEGP-HAS 389 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~--~~~~l~e~~RvLrpgG~~~~~~~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~ 389 (402)
+||+|++.... +...... ...++.++.|+|||||.+++... .+....+.+.+++.--.+......... .+.
T Consensus 152 ~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~ 230 (281)
T 1mjf_A 152 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASP 230 (281)
T ss_dssp CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSS
T ss_pred CeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCce
Confidence 89999996442 2211111 26889999999999999999731 233444444444443333332221111 234
Q ss_pred eEEEEEEec
Q 015704 390 YRILTADKR 398 (402)
Q Consensus 390 ~~~l~~~k~ 398 (402)
-.+++|.|.
T Consensus 231 ~~~~~as~~ 239 (281)
T 1mjf_A 231 WAFLVGVKG 239 (281)
T ss_dssp EEEEEEEES
T ss_pred EEEEEeeCC
Confidence 667777774
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-08 Score=90.01 Aligned_cols=128 Identities=18% Similarity=0.090 Sum_probs=78.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCC-CCCCCCC-----CcccE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWC-EPFDTYP-----RTYDL 321 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~-~~~~~~~-----~sfD~ 321 (402)
.+|||+|||+|.++..|++... ....|+.+| ++.+++.+.++ |+ +..++.-. +.++.++ .+||+
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALP--ADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSC--TTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 4699999999999999998521 012566666 45666655543 43 22232211 1111121 68999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC------------hhhHHHHHHHHH----hcCceEEEeecCCC
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS------------IDVMDELQEIGK----AMGWHVTLRETAEG 385 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~------------~~~~~~~~~~~~----~~~w~~~~~~~~~~ 385 (402)
|++... ..+...++.++.|+|||||++++.+. ......++++.+ .-++........+
T Consensus 149 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d- 221 (229)
T 2avd_A 149 AVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGD- 221 (229)
T ss_dssp EEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTT-
T ss_pred EEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCC-
Confidence 999743 33567899999999999999999642 122344455443 3456665554433
Q ss_pred CCCceEEEEEEe
Q 015704 386 PHASYRILTADK 397 (402)
Q Consensus 386 ~~~~~~~l~~~k 397 (402)
.+++++|
T Consensus 222 -----Gl~~~~k 228 (229)
T 2avd_A 222 -----GLTLAFK 228 (229)
T ss_dssp -----CEEEEEE
T ss_pred -----ceEEEEE
Confidence 3777776
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-08 Score=101.44 Aligned_cols=107 Identities=9% Similarity=0.097 Sum_probs=66.9
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhH-------Hhc----Cc----cccc
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVI-------YDR----GL----IGVM 305 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~-------~~r----g~----~~~~ 305 (402)
...+.+....+ ..|||+|||+|.++..|+.. |+ ..|+++| ++.+++.| .++ |+ +..+
T Consensus 233 ~ml~~l~l~~g--~~VLDLGCGsG~la~~LA~~~g~----~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i 306 (433)
T 1u2z_A 233 DVYQQCQLKKG--DTFMDLGSGVGNCVVQAALECGC----ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 306 (433)
T ss_dssp HHHHHTTCCTT--CEEEEESCTTSHHHHHHHHHHCC----SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred HHHHhcCCCCC--CEEEEeCCCcCHHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence 34444444433 35999999999999999986 32 1345554 33444444 332 42 2233
Q ss_pred cc-CCCCCCCC---CCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 306 HD-WCEPFDTY---PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 306 ~~-~~~~~~~~---~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+. ....-.+| +.+||+|++.+++ +.. ++..+|.|+.|+|||||.+++.++
T Consensus 307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~---d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 307 LKKSFVDNNRVAELIPQCDVILVNNFL-FDE---DLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECCTT-CCH---HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EcCccccccccccccCCCCEEEEeCcc-ccc---cHHHHHHHHHHhCCCCeEEEEeec
Confidence 21 11110012 2689999998766 322 457889999999999999999964
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-08 Score=91.27 Aligned_cols=139 Identities=13% Similarity=0.100 Sum_probs=81.1
Q ss_pred cceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc------Cc----ccccccCCCC-CCCCCCcccE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR------GL----IGVMHDWCEP-FDTYPRTYDL 321 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r------g~----~~~~~~~~~~-~~~~~~sfD~ 321 (402)
-++|||+|||.|.++..++++ +. ..|+.+| ++.+++.+.+. ++ +..++.-... +...+++||+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~----~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~ 151 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSV----KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV 151 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTC----SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred CCEEEEECCchHHHHHHHHhCCCC----ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeE
Confidence 467999999999999999987 31 2455555 45566665543 12 2233322211 1222479999
Q ss_pred EEEccccccccccC--CHHHHHHHhhhhccCCcEEEEEeC-----hhhHHHHHHHHHhcCceEEEeecCCC--CCCceEE
Q 015704 322 LHAAGLFSVESKRC--NMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTLRETAEG--PHASYRI 392 (402)
Q Consensus 322 v~~~~~~~~~~~~~--~~~~~l~e~~RvLrpgG~~~~~~~-----~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~ 392 (402)
|++.... +..... .-...+.++.|+|||||.+++... .+....+.+.+++.--.+......-. +.+.-.+
T Consensus 152 Ii~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~ 230 (275)
T 1iy9_A 152 IMVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTF 230 (275)
T ss_dssp EEESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEE
T ss_pred EEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEE
Confidence 9996433 221110 015899999999999999999842 23344444555555334433322111 1234567
Q ss_pred EEEEec
Q 015704 393 LTADKR 398 (402)
Q Consensus 393 l~~~k~ 398 (402)
++|.|.
T Consensus 231 ~~ask~ 236 (275)
T 1iy9_A 231 TIGSKK 236 (275)
T ss_dssp EEEESS
T ss_pred EEeeCC
Confidence 788875
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-08 Score=92.04 Aligned_cols=98 Identities=8% Similarity=0.047 Sum_probs=70.3
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-C-----CCCCe
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-Y-----PSQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp-~-----~~~sf 75 (402)
++.+|||+|||+|..+..+++ ..++++|+++..+..+. +...+.+.. ..+..+|... ++ + +.++|
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGL-PFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 567999999999998887764 27899999987776555 333344543 3355555432 22 1 25789
Q ss_pred eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 76 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+|++.. ...+...+++++.++|+|||++++..
T Consensus 149 D~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999753 23356789999999999999999974
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.6e-09 Score=94.67 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCC-CCCC------CCccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEP-FDTY------PRTYD 320 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~-~~~~------~~sfD 320 (402)
++|||+|||+|..+..|++.-. ....|+.+| ++.+++.+.++ |+ +..++.-... ++.+ +.+||
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIP--EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSC--TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CEEEEeCCCcCHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 4799999999999999988611 012566666 45666555443 44 3333322211 1222 37899
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|++... ..+...++.++.|+|||||++++.+
T Consensus 159 ~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9998732 2356799999999999999999874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-08 Score=91.01 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=60.9
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----C-------cccccccCCCCCCCCC-CcccE
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----G-------LIGVMHDWCEPFDTYP-RTYDL 321 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g-------~~~~~~~~~~~~~~~~-~sfD~ 321 (402)
.+|||+|||+|.++..|++. |.. ..|+.+| ++.+++.+.++ | -+..++..... ...+ .+||+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~ 154 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCT---GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM-GYAEEAPYDA 154 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG-CCGGGCCEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc-CcccCCCcCE
Confidence 36999999999999999976 311 1455555 45556555432 2 12222221121 1223 68999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
|++...+.++ +.++.|+|||||+++++...
T Consensus 155 i~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVV---------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSC---------CHHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHH---------HHHHHHhcCCCcEEEEEEec
Confidence 9999877654 35889999999999998654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-08 Score=90.18 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=78.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCC-CCCCCC---C--CcccE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWC-EPFDTY---P--RTYDL 321 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~-~~~~~~---~--~sfD~ 321 (402)
++|||+|||+|.++..|++.-.+ ...|+.+| ++.+++.+.++ |+ +..+.... +.++.+ + ++||+
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPP--DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCT--TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 36999999999999999986210 12455555 45566555443 43 22222211 111112 1 68999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHHHHHh----cCceEEEeecCCC
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQEIGKA----MGWHVTLRETAEG 385 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~~~~~----~~w~~~~~~~~~~ 385 (402)
|++... ..+...++.++.|+|||||++++.+.. .....++++.+. -++........
T Consensus 152 V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~-- 223 (232)
T 3cbg_A 152 IFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLG-- 223 (232)
T ss_dssp EEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSB--
T ss_pred EEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcC--
Confidence 998743 234578999999999999999997422 223455555444 35665554432
Q ss_pred CCCceEEEEEEec
Q 015704 386 PHASYRILTADKR 398 (402)
Q Consensus 386 ~~~~~~~l~~~k~ 398 (402)
..+.+++|.
T Consensus 224 ----dG~~~~~~~ 232 (232)
T 3cbg_A 224 ----DGMTLALKK 232 (232)
T ss_dssp ----TCEEEEEEC
T ss_pred ----CeEEEEEeC
Confidence 237777763
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.8e-08 Score=97.89 Aligned_cols=104 Identities=18% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCC-CCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPY-PSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~-~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|..+..+++. .|+++|+++.++..+. +.++..+.. ..+...|...++. .+++||.|++..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~-~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLH-ANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 6779999999999988887752 6999999998776555 444444554 3466667766653 457899999732
Q ss_pred cc-----c--------ccccC--------hHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 83 CR-----I--------NWTRD--------DGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 83 ~~-----~--------~~~~d--------~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
.. + +|..+ ...++.++.++|||||.++++|..
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 11 1 11110 136789999999999999999743
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-08 Score=92.07 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=62.3
Q ss_pred eEEeccccchHHHHHHhhcC-CCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-C-cccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQK-FDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-R-TYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~-~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~-sfD~v~~~~ 326 (402)
+|||+|||+|.++..|++.+ . .|+.+| ++.+++.+.++ |+ +....... ..+++ . .||+|++..
T Consensus 94 ~vLdiG~G~G~~~~~la~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 94 NILEVGTGSGWNAALISEIVKT-----DVYTIERIPELVEFAKRNLERAGVKNVHVILGDG--SKGFPPKAPYDVIIVTA 166 (235)
T ss_dssp CEEEECCTTSHHHHHHHHHHCS-----CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GGCCGGGCCEEEEEECS
T ss_pred EEEEEeCCcCHHHHHHHHHhCC-----EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc--ccCCCCCCCccEEEECC
Confidence 59999999999999999885 3 455555 45566555543 33 22222111 23455 3 599999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
++.++.+ ++.|+|||||.+++..+.
T Consensus 167 ~~~~~~~---------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 167 GAPKIPE---------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp BBSSCCH---------HHHHTEEEEEEEEEEECS
T ss_pred cHHHHHH---------HHHHhcCCCcEEEEEEec
Confidence 8888652 789999999999999765
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.64 E-value=3.8e-08 Score=87.19 Aligned_cols=108 Identities=16% Similarity=0.045 Sum_probs=70.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-cccccccCCCCCCCCCCcccEEEEccccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-LIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 333 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~ 333 (402)
.+|||+|||+|.++..++..|.. .|+++| ++.+++.+.++- -+..++...+. +|++||+|++...+.|..+
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~---~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGAE----SVTAFDIDPDAIETAKRNCGGVNFMVADVSE---ISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS----EEEEEESCHHHHHHHHHHCTTSEEEECCGGG---CCCCEEEEEECCCC-----
T ss_pred CEEEEEeCCccHHHHHHHHcCCC----EEEEEECCHHHHHHHHHhcCCCEEEECcHHH---CCCCeeEEEECCCchhccC
Confidence 46999999999999999988641 466666 467777776653 12333322222 4589999999999999865
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcC
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMG 374 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~ 374 (402)
. ....++.++.|+| |+.+++.. ......+.+.+....
T Consensus 126 ~-~~~~~l~~~~~~~--g~~~~~~~-~~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 126 H-SDRAFIDKAFETS--MWIYSIGN-AKARDFLRREFSARG 162 (200)
T ss_dssp ---CHHHHHHHHHHE--EEEEEEEE-GGGHHHHHHHHHHHE
T ss_pred c-hhHHHHHHHHHhc--CcEEEEEc-CchHHHHHHHHHHCC
Confidence 3 2357899999999 66555544 344566666666554
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=9.2e-08 Score=92.15 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=72.1
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++.. +.. .++++|+++..+..+. +.+..++. ...+...|..... ++||+|+++...
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~-~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLK-KNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence 3677999999999999988 754 7999999998876665 44445554 2456677766654 789999986431
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
....++.++.++|+|||.+++.+.
T Consensus 269 -----~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 269 -----FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp -----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 123788999999999999998753
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=87.23 Aligned_cols=127 Identities=14% Similarity=0.024 Sum_probs=74.2
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----------cccccccCCCCCCCCCCcccEEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----------LIGVMHDWCEPFDTYPRTYDLLH 323 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----------~~~~~~~~~~~~~~~~~sfD~v~ 323 (402)
-++|||+|||.|+++..+++.+. .|+.+| ++.+++.+.++- -+..++.-.. .|.++||+|+
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~~-----~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~---~~~~~fD~Ii 144 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYDT-----HIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLD---LDIKKYDLIF 144 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSSC-----EEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGG---SCCCCEEEEE
T ss_pred CCEEEEEeCCcCHHHHHHHhCCC-----EEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHH---HHHhhCCEEE
Confidence 36799999999999999988742 444444 344444443321 1222322222 2238899999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCceEEEeecCCCCC-CceEEEEEEe
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHVTLRETAEGPH-ASYRILTADK 397 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~l~~~k 397 (402)
+. ..++...+.++.|+|||||.+++.... +....+.+.+++. +.........-|. +.-.+++|.|
T Consensus 145 ~d--------~~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as~ 215 (262)
T 2cmg_A 145 CL--------QEPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYASF 215 (262)
T ss_dssp ES--------SCCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEES
T ss_pred EC--------CCChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEeeC
Confidence 97 224467899999999999999997321 2233333334443 3322222222232 2344667776
Q ss_pred c
Q 015704 398 R 398 (402)
Q Consensus 398 ~ 398 (402)
.
T Consensus 216 ~ 216 (262)
T 2cmg_A 216 K 216 (262)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-08 Score=92.24 Aligned_cols=139 Identities=9% Similarity=0.020 Sum_probs=76.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------Cc----ccccccCCCC-CCCCCCcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL----IGVMHDWCEP-FDTYPRTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------g~----~~~~~~~~~~-~~~~~~sfD~v~ 323 (402)
.+|||+|||.|+++..+++... +..|+.+| ++.+++.+.++ ++ +..++.-... +...+++||+|+
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~---~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDS---VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTT---CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 5799999999999999998721 12555655 45566555443 11 2222221111 122247899999
Q ss_pred Ecccccc-ccccC--CHHHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCceEEEeecCCC--CCCceEEE
Q 015704 324 AAGLFSV-ESKRC--NMSTIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHVTLRETAEG--PHASYRIL 393 (402)
Q Consensus 324 ~~~~~~~-~~~~~--~~~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~l 393 (402)
+.. ..+ ..... .-..++.++.|+|||||.+++.... +....+.+.+++.--.+........ +.+.-.++
T Consensus 169 ~d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~ 247 (296)
T 1inl_A 169 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYT 247 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEE
T ss_pred EcC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEE
Confidence 852 222 11100 1168999999999999999997322 2233333333333333333221111 23456678
Q ss_pred EEEec
Q 015704 394 TADKR 398 (402)
Q Consensus 394 ~~~k~ 398 (402)
+|.|.
T Consensus 248 ~as~~ 252 (296)
T 1inl_A 248 FASKG 252 (296)
T ss_dssp EEESS
T ss_pred EecCC
Confidence 88875
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.8e-08 Score=94.76 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc----CCC-cEEEeccccCCCCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAP-AMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~----~~~-~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
...+|||||||+|.++..++++ +++..|+ +..+ +.+++. +.. ..+..+|....|.+ .+|++++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~-----~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~ 250 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVV-----WTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYIL 250 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHH-----HHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEE
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHH-----HHHHHhhhhcccCceeeecCccccCCCC--CceEEEe
Confidence 4569999999999999888875 3455554 2222 333322 222 34666676554544 5799999
Q ss_pred cCcccccccCh-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRDD-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..++++|.++. ..+|+++++.|+|||.+++...
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 99988887443 6789999999999999999854
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-08 Score=93.69 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=78.0
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------Cc----ccccccCCCC-CCCCCCcccEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL----IGVMHDWCEP-FDTYPRTYDLL 322 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------g~----~~~~~~~~~~-~~~~~~sfD~v 322 (402)
-++|||+|||.|.++..|++++. ...|+.+| ++.+++.+.++ |+ +..++.-... ++..+++||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~---~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPS---VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTT---CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 36799999999999999998741 22556665 45566655543 22 2222221111 12224799999
Q ss_pred EEcccccccccc--CCHHHHHHHhhhhccCCcEEEEEe-C----hhhHHHHHHHHHhcCceEEEeec-CCC-CCCceEEE
Q 015704 323 HAAGLFSVESKR--CNMSTIMLEMDRMLRPGGHVYIRD-S----IDVMDELQEIGKAMGWHVTLRET-AEG-PHASYRIL 393 (402)
Q Consensus 323 ~~~~~~~~~~~~--~~~~~~l~e~~RvLrpgG~~~~~~-~----~~~~~~~~~~~~~~~w~~~~~~~-~~~-~~~~~~~l 393 (402)
++... .+.... -....++.++.|+|||||.+++.. . .+....+.+.++++-=.+..... -.- +.+.-.++
T Consensus 173 i~d~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~ 251 (304)
T 2o07_A 173 ITDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFM 251 (304)
T ss_dssp EEECC------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEE
T ss_pred EECCC-CCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEE
Confidence 99643 222110 012478999999999999999975 2 12344555555444333332211 100 11234577
Q ss_pred EEEec
Q 015704 394 TADKR 398 (402)
Q Consensus 394 ~~~k~ 398 (402)
+|.|.
T Consensus 252 ~as~~ 256 (304)
T 2o07_A 252 LCSKN 256 (304)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 77764
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-07 Score=87.87 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=51.3
Q ss_pred CCCcccEEEEccccc--------cccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCce-EEEeecCC
Q 015704 315 YPRTYDLLHAAGLFS--------VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWH-VTLRETAE 384 (402)
Q Consensus 315 ~~~sfD~v~~~~~~~--------~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~-~~~~~~~~ 384 (402)
++++||+|+|.-... +.........+|.++.|+|||||.|++.... .....+..++++..|. +... . .
T Consensus 120 ~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~-a-s 197 (290)
T 2xyq_A 120 TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT-N-V 197 (290)
T ss_dssp CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE-G-G
T ss_pred ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE-E-c
Confidence 457999999963221 1111122458999999999999999996522 1234666677776454 4343 2 2
Q ss_pred CCCCceEEEEEEe
Q 015704 385 GPHASYRILTADK 397 (402)
Q Consensus 385 ~~~~~~~~l~~~k 397 (402)
.....|.+|+++.
T Consensus 198 r~~s~e~~lv~~~ 210 (290)
T 2xyq_A 198 NASSSEAFLIGAN 210 (290)
T ss_dssp GTTSSCEEEEEEE
T ss_pred CCCchheEEecCC
Confidence 2334788998875
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.2e-08 Score=91.18 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=65.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+... ....+. ...+...|+..++++ +||+|+++.. +
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~D~~~~~~~--~fD~vv~nlp-y 103 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKR-VQGTPVASKLQVLVGDVLKTDLP--FFDTCVANLP-Y 103 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHH-HTTSTTGGGEEEEESCTTTSCCC--CCSEEEEECC-G
T ss_pred CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEEEcceecccch--hhcEEEEecC-c
Confidence 5679999999999999988865 799999998776554422 222222 244667787777665 7999998754 6
Q ss_pred ccccCh-HHHH--------------HHH--HHhcCCCeEEE
Q 015704 86 NWTRDD-GILL--------------LEV--NRMLRAGGYFA 109 (402)
Q Consensus 86 ~~~~d~-~~~l--------------~e~--~r~LkpgG~li 109 (402)
++..+. ..++ +|+ +++|+|||.++
T Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 104 QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 665332 2333 333 36899999873
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.9e-08 Score=92.49 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=72.4
Q ss_pred CCCeEEEECCccchhHHHHcc---------CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLP---------RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~---------~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
++.+|||+|||+|.++..+++ ..++|+|+++..+..+..... ..+....+...|... +.+.++||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~-~~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH-hCCCCceEEECCCCC-ccccCCccEEEE
Confidence 457999999999988766653 357899999877765554333 334555566666443 334578999999
Q ss_pred cCcccccccC----------------h-HHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCRINWTRD----------------D-GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~~~~~~d----------------~-~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+..+.++..+ . ..++.++.+.|+|||.+++.++
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 9775444211 1 2579999999999999999863
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=93.46 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=70.9
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.+..++....+...|+..+.. .+||+|+++.....
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~-~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMAR-RNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccc
Confidence 35679999999999999988875 7999999998887665 4444455555567777766542 28999998654211
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
-...+++.+. .|+|||.++++..
T Consensus 366 ---~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 366 ---LHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp ---SCHHHHHHHH-HHCCSEEEEEESC
T ss_pred ---hHHHHHHHHH-hcCCCcEEEEECC
Confidence 1234555554 5999999999963
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=85.54 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=86.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-C-cccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-R-TYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~-sfD~v~~~ 325 (402)
..|||+|||+|.++..|+..+. ...|+++| ++.+++.|.+. |+ +..... ..+..++ . .||+|+..
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~---~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~--d~l~~l~~~~~~D~Ivia 91 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQ---IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLA--NGLAAFEETDQVSVITIA 91 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTS---EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEC--SGGGGCCGGGCCCEEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC--chhhhcccCcCCCEEEEc
Confidence 3599999999999999999863 33566666 45555544433 54 233322 1123345 4 69988865
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEee--cCCCCCCceEEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE--TAEGPHASYRILTADK 397 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~l~~~k 397 (402)
+.-- ..+..+|.+..+.|+|||++|++-. .-...+++.+....|.+..-. .|++ .-..||++.+
T Consensus 92 G~Gg-----~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~~Gf~i~~e~lv~e~~--~~Yeii~~~~ 157 (225)
T 3kr9_A 92 GMGG-----RLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQDHGFQIVAESILEEAG--KFYEILVVEA 157 (225)
T ss_dssp EECH-----HHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHHTTEEEEEEEEEEETT--EEEEEEEEEE
T ss_pred CCCh-----HHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHHCCCEEEEEEEEEECC--EEEEEEEEEe
Confidence 4311 1256889999999999999999765 568889999999999988654 2222 1244666654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.1e-08 Score=92.99 Aligned_cols=138 Identities=13% Similarity=0.128 Sum_probs=75.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------Cc----ccccccCCCC-CCCCCCcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL----IGVMHDWCEP-FDTYPRTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------g~----~~~~~~~~~~-~~~~~~sfD~v~ 323 (402)
++|||+|||.|.++..+++.. ....|+.+| ++.+++.+.++ |+ +..++.-... +...+++||+|+
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~---~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHE---SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCT---TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 579999999999999999873 123666666 45677666554 11 2222211111 111137999999
Q ss_pred EccccccccccCCH--HHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCceEEEeecCCCCC---CceEEE
Q 015704 324 AAGLFSVESKRCNM--STIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHVTLRETAEGPH---ASYRIL 393 (402)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~l 393 (402)
+.. ..+....... ..++.++.|+|||||.+++.... +....+.+.++++-=.+..... .-|. +.-.++
T Consensus 187 ~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~-~iP~~~~g~~g~~ 264 (314)
T 2b2c_A 187 TDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQS-IVSTYPSGSMGYL 264 (314)
T ss_dssp ECC-C-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEE-ECTTSGGGEEEEE
T ss_pred EcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEE-EecCcCCCceEEE
Confidence 864 3333211111 58899999999999999997521 2344444445444333332221 1121 122467
Q ss_pred EEEec
Q 015704 394 TADKR 398 (402)
Q Consensus 394 ~~~k~ 398 (402)
+|.|.
T Consensus 265 ~ask~ 269 (314)
T 2b2c_A 265 ICAKN 269 (314)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 77664
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.57 E-value=7e-09 Score=95.62 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=55.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCC--CCCCC----CcccE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEP--FDTYP----RTYDL 321 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~--~~~~~----~sfD~ 321 (402)
.+|||+|||+|.++..|+.+.. ...|+++| ++.+++.|.++ |+ +..++.-.+. +.+++ ++||+
T Consensus 67 ~~vLDlG~G~G~~~~~la~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 67 RRGIDIGTGASCIYPLLGATLN---GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CEEEEeCCChhHHHHHHHHhCC---CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 4699999999999999987621 12666766 56677665543 43 3344432222 12344 58999
Q ss_pred EEEcccccccc-c------c-----CCHHHHHHHhhhhccCCcEEEEE
Q 015704 322 LHAAGLFSVES-K------R-----CNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 322 v~~~~~~~~~~-~------~-----~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
|+|.-.+.+.. + + .....++.++.|+|||||.+.+.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99985544332 0 0 01124567777888877766544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.6e-08 Score=97.73 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=72.3
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC-CCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-YPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp-~~~~sfDlI~s~ 81 (402)
.++.+|||+|||+|..+..+++. .|+++|+++..+..+. +.+...+..+ .+...|...++ ..+++||+|++.
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~-~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILS-ENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHH-HHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 45789999999999888777643 6899999998776555 4444556554 35555655554 235789999974
Q ss_pred Ccc---cc----------cccC--------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCR---IN----------WTRD--------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~---~~----------~~~d--------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
... -. |..+ ...++.++.++|||||.++++|-
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 321 11 1111 12679999999999999999874
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-07 Score=89.63 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=52.7
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
.++.+|||+|||+|.++..+++. .++++|+++.++..+... ....+.. ..+..+|+..+++ .+||+|+++.. .
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~-~~~~~~~~v~~~~~D~~~~~~--~~~D~Vv~n~p-y 116 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKR-CLYEGYNNLEVYEGDAIKTVF--PKFDVCTANIP-Y 116 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHH-HHHTTCCCEEC----CCSSCC--CCCSEEEEECC-G
T ss_pred CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEECchhhCCc--ccCCEEEEcCC-c
Confidence 35679999999999999999876 799999998877655533 3333433 3455667766665 48999998754 5
Q ss_pred ccc
Q 015704 86 NWT 88 (402)
Q Consensus 86 ~~~ 88 (402)
++.
T Consensus 117 ~~~ 119 (299)
T 2h1r_A 117 KIS 119 (299)
T ss_dssp GGH
T ss_pred ccc
Confidence 554
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.3e-08 Score=89.05 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=62.2
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc---ccccccCC-CCCCCC------CCcc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL---IGVMHDWC-EPFDTY------PRTY 319 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~---~~~~~~~~-~~~~~~------~~sf 319 (402)
-++|||+|||+|..+..|++.-. ....|+.+| ++.+++.+.+ .|+ +..++.-. +.++.+ +++|
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIP--DDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSC--TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 34799999999999999987611 012555655 4555555543 354 22222211 111222 3789
Q ss_pred cEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 320 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 320 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|+|++... ..+...++.++.|+|||||++++.+
T Consensus 149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99998732 2245789999999999999999975
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=88.62 Aligned_cols=99 Identities=11% Similarity=0.066 Sum_probs=63.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC-c-----ccccccCCCC-CCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG-L-----IGVMHDWCEP-FDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg-~-----~~~~~~~~~~-~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||.|+++..|+++...+ .|+.+| ++.+++.+.++- + +..++.-... +..++ ++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 379999999999999999842122 455555 456777776542 1 2223221111 22355 7999999863
Q ss_pred ccccccccC--CHHHHHHHhhhhccCCcEEEEEe
Q 015704 327 LFSVESKRC--NMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 327 ~~~~~~~~~--~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+.+..... .-..++.++.|+|||||.+++..
T Consensus 168 -~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 168 -FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp -STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 33221110 11589999999999999999874
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.1e-08 Score=91.93 Aligned_cols=139 Identities=17% Similarity=0.169 Sum_probs=79.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC------c----ccccccCCCC-CCCCCCcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG------L----IGVMHDWCEP-FDTYPRTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg------~----~~~~~~~~~~-~~~~~~sfD~v~ 323 (402)
.+|||+|||.|.++..+++.. ....|+.+| ++.+++.+.++- + +..++.-... +...+++||+|+
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~---~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYK---SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCT---TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 579999999999999999872 123566666 456666665531 1 2222211111 111247999999
Q ss_pred EccccccccccCCH--HHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCceEEEeecCCC--CCCceEEEE
Q 015704 324 AAGLFSVESKRCNM--STIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHVTLRETAEG--PHASYRILT 394 (402)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~l~ 394 (402)
+.. ..+....... ..++.++.|+|||||++++.... +....+.+.+++.--.+......-. +.+.-.+++
T Consensus 195 ~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~ 273 (321)
T 2pt6_A 195 VDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC 273 (321)
T ss_dssp EEC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred ECC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence 863 2222111111 68999999999999999996422 2344444444444344433321111 112345677
Q ss_pred EEec
Q 015704 395 ADKR 398 (402)
Q Consensus 395 ~~k~ 398 (402)
|.|.
T Consensus 274 as~~ 277 (321)
T 2pt6_A 274 CSKT 277 (321)
T ss_dssp EESS
T ss_pred eeCC
Confidence 7764
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.9e-08 Score=87.81 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=61.2
Q ss_pred ceEEeccccchHHHHHHhhc-CCC-c-eEEEeccCC-CCCChhhHHhc----C-------cccccccCCCCCCCCC--Cc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFD-C-WVMNVVPVS-GFNTLPVIYDR----G-------LIGVMHDWCEPFDTYP--RT 318 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~-~-~~~~v~~~~-~~~~~~~~~~r----g-------~~~~~~~~~~~~~~~~--~s 318 (402)
.+|||+|||+|.++..|++. +.. + ....|+.+| ++.+++.+.++ | -+..++..... .++ .+
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~ 163 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK--GYPPNAP 163 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG--CCGGGCS
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc--CCCcCCC
Confidence 36999999999999999874 200 0 001455555 45556555443 2 12223222121 244 68
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
||+|++...++|+. .++.|+|||||++++.-..
T Consensus 164 fD~I~~~~~~~~~~---------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 164 YNAIHVGAAAPDTP---------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEESC
T ss_pred ccEEEECCchHHHH---------HHHHHHhcCCCEEEEEEec
Confidence 99999998887754 6889999999999998653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.4e-08 Score=92.39 Aligned_cols=139 Identities=15% Similarity=0.118 Sum_probs=79.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------C-c----ccccccCCCCC-CCCCCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------G-L----IGVMHDWCEPF-DTYPRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------g-~----~~~~~~~~~~~-~~~~~sfD~v 322 (402)
++|||+|||.|.++..+++... +..|+.+| ++.+++.+.++ | + +..+..-...+ ...+++||+|
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~~---~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHPT---VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTSTT---CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CeEEEEcCCcCHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 5799999999999999998731 12555655 45566655443 1 1 22222211111 1124799999
Q ss_pred EEccccccc---cccCC--HHHHHHHhhhhccCCcEEEEEeC------hhhHHHHHHHHHhcCceEEEeecC-CCCCCce
Q 015704 323 HAAGLFSVE---SKRCN--MSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMGWHVTLRETA-EGPHASY 390 (402)
Q Consensus 323 ~~~~~~~~~---~~~~~--~~~~l~e~~RvLrpgG~~~~~~~------~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~ 390 (402)
++.... |. ..... ...++.++.|+|||||.+++... .+....+.+.+++.--.+...... ....+.-
T Consensus 156 i~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~ 234 (314)
T 1uir_A 156 IIDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNF 234 (314)
T ss_dssp EEECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEE
T ss_pred EECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeE
Confidence 997544 32 10001 26899999999999999998731 233455555555553333322110 0001234
Q ss_pred EEEEEEec
Q 015704 391 RILTADKR 398 (402)
Q Consensus 391 ~~l~~~k~ 398 (402)
.+++|.|.
T Consensus 235 ~~~~as~~ 242 (314)
T 1uir_A 235 GFLLASDA 242 (314)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 56777774
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.3e-07 Score=83.13 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=87.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCCC-cccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPR-TYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~-sfD~v~~~ 325 (402)
..|||+|||+|.++.+|++.|. ...|+++| ++.+++.|.+. |+ +...+ +..+.+ .|. .||+|+..
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~---~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~--~~~~~~D~Ivia 97 (230)
T 3lec_A 23 ARLLDVGSDHAYLPIFLLQMGY---CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF--EEADNIDTITIC 97 (230)
T ss_dssp EEEEEETCSTTHHHHHHHHTTC---EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC--CGGGCCCEEEEE
T ss_pred CEEEEECCchHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc--ccccccCEEEEe
Confidence 4599999999999999999863 33566666 45555554433 54 33333 222221 233 79998866
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
+.--. .+..+|.+..+.|+|+|+||++-.. -.+.+++.+....|.+..-.-......-..||.+.+
T Consensus 98 GmGg~-----lI~~IL~~~~~~l~~~~~lIlqp~~-~~~~lr~~L~~~Gf~i~~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 98 GMGGR-----LIADILNNDIDKLQHVKTLVLQPNN-REDDLRKWLAANDFEIVAEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EECHH-----HHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHTTEEEEEEEEEEC--CEEEEEEEEE
T ss_pred CCchH-----HHHHHHHHHHHHhCcCCEEEEECCC-ChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 44332 2468899999999999999999754 488999999999999887553211112345666665
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=91.26 Aligned_cols=114 Identities=10% Similarity=0.045 Sum_probs=76.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCC-CCC-CCCcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEP-FDT-YPRTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~-~~~-~~~sfD~v~~~~ 326 (402)
.+|||+| |+|.++..++..+.. ..|+.+| ++.+++.+.++ |+ +..+..-... ++. ++++||+|+++.
T Consensus 174 ~~VLDlG-G~G~~~~~la~~~~~---~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 174 KDIFVLG-DDDLTSIALMLSGLP---KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp CEEEEES-CTTCHHHHHHHHTCC---SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CEEEEEC-CCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 5699999 999999999887531 2577777 46777766655 54 4444432233 443 236999999987
Q ss_pred ccccccccCCHHHHHHHhhhhccCCc-EEEEEeCh--hhH---HHHHHHHH-hcCceE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGG-HVYIRDSI--DVM---DELQEIGK-AMGWHV 377 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG-~~~~~~~~--~~~---~~~~~~~~-~~~w~~ 377 (402)
.+.+.. ...+|.++.|+||||| .++++-.. ... ..+++.+. +..+++
T Consensus 250 p~~~~~----~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 250 PETLEA----IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp CSSHHH----HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred CCchHH----HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence 765432 4789999999999999 33554322 223 56677766 666654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-08 Score=89.79 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=61.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCc--eEEEeccCC-CCCChhhHHhc----C-----c--ccccccCCCCCCC---CC-C
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDC--WVMNVVPVS-GFNTLPVIYDR----G-----L--IGVMHDWCEPFDT---YP-R 317 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~--~~~~v~~~~-~~~~~~~~~~r----g-----~--~~~~~~~~~~~~~---~~-~ 317 (402)
.+|||+|||+|.++..|++..... ....|+.+| ++.+++.+.++ | . +..+..-.....+ ++ .
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 161 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG 161 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence 469999999999999999864100 001455555 34556555443 3 1 2223221222110 23 7
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+||+|++...++|+ +.++.++|||||++++.-..
T Consensus 162 ~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 162 LFDAIHVGASASEL---------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CEEEEEECSBBSSC---------CHHHHHHEEEEEEEEEEEEE
T ss_pred CcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEcc
Confidence 89999999887764 47889999999999998653
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=84.92 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=86.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCCC-cccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPR-TYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~-sfD~v~~~ 325 (402)
..|||+|||+|.++.+|++.+. ...|+++| ++.+++.|.+. |+ +.... +..+.+ .|. .||+|+..
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~---~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~--~~~~~~D~Ivia 97 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQT---ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI--EKKDAIDTIVIA 97 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTS---EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC--CGGGCCCEEEEE
T ss_pred CEEEEECCccHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc--CccccccEEEEe
Confidence 3599999999999999999863 33566666 45566555544 55 33333 222221 234 59998865
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
+.--. .+..+|.+..+.|+|+|+||++-.. -...+++.+....|.+..-...........+|.+.+
T Consensus 98 gmGg~-----lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~~Gf~i~~E~lv~e~~k~Yeii~~~~ 163 (244)
T 3gnl_A 98 GMGGT-----LIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQNNWLITSEAILREDNKVYEIMVLAP 163 (244)
T ss_dssp EECHH-----HHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHHTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCchH-----HHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHHCCCEEEEEEEEEECCEEEEEEEEEe
Confidence 43322 3568899999999999999999754 578899999999999854331111112355666665
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-07 Score=92.99 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=71.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCC-CC-CcccEEEE----
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDT-YP-RTYDLLHA---- 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~-~~-~sfD~v~~---- 324 (402)
+|||+|||+|+++.+|++...+ ..|+++| ++.+++.+.++ |+ +..++.-...++. ++ ++||+|++
T Consensus 249 ~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 325 (429)
T 1sqg_A 249 HILDLCAAPGGKTTHILEVAPE---AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 325 (429)
T ss_dssp EEEEESCTTCHHHHHHHHHCTT---CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred eEEEECCCchHHHHHHHHHcCC---CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCC
Confidence 5999999999999999987531 3566666 46667665554 54 3333322222221 45 68999996
Q ss_pred --ccccccccc------cCCH-------HHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHHh
Q 015704 325 --AGLFSVESK------RCNM-------STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKA 372 (402)
Q Consensus 325 --~~~~~~~~~------~~~~-------~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~~ 372 (402)
.+++.+-++ ..++ ..+|.++.++|||||++++++ +.+-...+..++++
T Consensus 326 sg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~ 392 (429)
T 1sqg_A 326 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392 (429)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred CcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHh
Confidence 233333221 0111 378999999999999999986 22334456666554
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-07 Score=81.88 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=78.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.+|||+|||+|.++..+++.|.. .|+++| ++.+++.+.++ |+ +..++... ..+|.+||+|++.-.+.
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~----~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAK----EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV---SEFNSRVDIVIMNPPFG 123 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG---GGCCCCCSEEEECCCCS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCC----EEEEEECCHHHHHHHHHHHHHcCCCEEEEECch---HHcCCCCCEEEEcCCCc
Confidence 46999999999999999998642 466666 45666666554 22 33333322 33467999999998777
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEE-eChhhHHHHHHHHHhcCceEEE
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~-~~~~~~~~~~~~~~~~~w~~~~ 379 (402)
+.... ....+|.++.|+| ||.+++. .+....+.+.+.+....|++..
T Consensus 124 ~~~~~-~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 124 SQRKH-ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp SSSTT-TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred cccCC-chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 66532 3367899999999 6655554 2555667777888888887654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-08 Score=90.07 Aligned_cols=99 Identities=19% Similarity=0.184 Sum_probs=63.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC------c----ccccccCCCCC-CCCCCcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG------L----IGVMHDWCEPF-DTYPRTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg------~----~~~~~~~~~~~-~~~~~sfD~v~ 323 (402)
++|||+|||.|+++..+++.. .+..|+.+| ++.+++.+.++- + +..++.-...+ ...+++||+|+
T Consensus 80 ~~VLdiG~G~G~~~~~l~~~~---~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELCKYK---SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp CEEEEEECTTSHHHHHHTTCT---TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CeEEEEeCCcCHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 579999999999999999874 123566665 455666665531 1 12222111111 11247999999
Q ss_pred EccccccccccCCH--HHHHHHhhhhccCCcEEEEEe
Q 015704 324 AAGLFSVESKRCNM--STIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 324 ~~~~~~~~~~~~~~--~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+.... +....... ..++.++.|+|||||.+++..
T Consensus 157 ~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 96432 22211112 589999999999999999984
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-08 Score=90.80 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=68.8
Q ss_pred eEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCC----CCcccEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTY----PRTYDLLH 323 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~----~~sfD~v~ 323 (402)
.|||+|||+|+++..|++. +. ..|+++| ++.+++.+.++ |+ +..++.-...++.. +.+||+|+
T Consensus 86 ~VLDlgaG~G~~t~~la~~~~~~----~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 86 FILDMCAAPGGKTTHLAQLMKNK----GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp EEEETTCTTCHHHHHHHHHTTTC----SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCccHHHHHHHHHcCCC----CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 5999999999999999973 31 1566666 45556554443 44 33333222222211 46899999
Q ss_pred Ec------ccccccc---------ccCCHHHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHh-cCceE
Q 015704 324 AA------GLFSVES---------KRCNMSTIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKA-MGWHV 377 (402)
Q Consensus 324 ~~------~~~~~~~---------~~~~~~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~-~~w~~ 377 (402)
+. +++.+-+ -......+|.++.|+|||||+++++.- .+-.+.++.++++ -.|++
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~ 235 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVEL 235 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEE
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEE
Confidence 87 2222100 002346899999999999999999742 1224455665543 23443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.2e-07 Score=91.07 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=73.8
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-CC-CcccEEEE---
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YP-RTYDLLHA--- 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~~-~sfD~v~~--- 324 (402)
.|||+|||+|+++.+|++.-.+ ...|+++| ++.+++.+.++ |+ +..++.-...++. ++ .+||+|++
T Consensus 262 ~VLDlgaG~G~~t~~la~~~~~--~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~P 339 (450)
T 2yxl_A 262 TVVDLAAAPGGKTTHLAELMKN--KGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAP 339 (450)
T ss_dssp EEEESSCTTCHHHHHHHHHTTT--CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEECC
T ss_pred EEEEeCCCccHHHHHHHHHcCC--CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcCC
Confidence 5999999999999999985210 02567776 45566555544 54 3333332233332 66 78999996
Q ss_pred ---ccccccccc------cCCH-------HHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHhc-CceE
Q 015704 325 ---AGLFSVESK------RCNM-------STIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKAM-GWHV 377 (402)
Q Consensus 325 ---~~~~~~~~~------~~~~-------~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~~-~w~~ 377 (402)
..++.+-++ ..++ ..+|.++.++|||||++++++- .+-.+.++.++++- .|+.
T Consensus 340 csg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~ 413 (450)
T 2yxl_A 340 CTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKL 413 (450)
T ss_dssp CCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEE
T ss_pred CCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 334433221 1122 4789999999999999998752 22244566666654 3544
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-07 Score=93.48 Aligned_cols=119 Identities=9% Similarity=-0.000 Sum_probs=73.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCCCCC-CCC---CCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWCEPF-DTY---PRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~~~~-~~~---~~sfD~v 322 (402)
.+|||+|||+|+|+..++..|+. .|+.+| ++.+++.|.+. |+ +..+..-+..+ +.. ..+||+|
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~----~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAM----ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBS----EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEeeccCHHHHHHHHCCCC----EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 36999999999999999997641 466666 45666655443 33 12222211111 111 2489999
Q ss_pred EEcccc-----ccccc-cCCHHHHHHHhhhhccCCcEEEEEeCh------hhHHHHHHHHHhcCceEE
Q 015704 323 HAAGLF-----SVESK-RCNMSTIMLEMDRMLRPGGHVYIRDSI------DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 323 ~~~~~~-----~~~~~-~~~~~~~l~e~~RvLrpgG~~~~~~~~------~~~~~~~~~~~~~~w~~~ 378 (402)
++.--. .+..+ ..+...++.+..++|||||+++++... ...+.+++.+....+++.
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 357 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL 357 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEE
Confidence 984222 11111 112345778889999999999998642 345566677777777733
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-08 Score=95.45 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=64.2
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc------Cc----ccccccCCCC-CCCCC-CcccE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR------GL----IGVMHDWCEP-FDTYP-RTYDL 321 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r------g~----~~~~~~~~~~-~~~~~-~sfD~ 321 (402)
-++|||+|||.|.++..|++.. .+..|+.+| ++.+++.+.++ |+ +..++.-... +..++ ++||+
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~---~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHA---SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCT---TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCEEEEECCCccHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3679999999999999999873 123566666 45666666543 22 2223221111 22344 79999
Q ss_pred EEEccccccccccCC--HHHHHHHhhhhccCCcEEEEE
Q 015704 322 LHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 322 v~~~~~~~~~~~~~~--~~~~l~e~~RvLrpgG~~~~~ 357 (402)
|++... .+...... ...++.++.|+|||||.+++.
T Consensus 198 Ii~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCC-CccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999643 11111111 268999999999999999997
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.8e-07 Score=94.34 Aligned_cols=115 Identities=14% Similarity=0.186 Sum_probs=70.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-CCCcccEEEEc---
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHAA--- 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~~~sfD~v~~~--- 325 (402)
.|||+|||+|+.+.+|++.-. -...|+++| ++.+++.+.++ |+ +..++.-...++. ++++||.|++.
T Consensus 120 ~VLDl~aGpG~kt~~lA~~~~--~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 120 RVMDVAAAPGSKTTQISARMN--NEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp EEEESSCTTSHHHHHHHHHTT--TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred EEEEeCCCCCHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 599999999999999998510 012577777 55666655443 54 3334333333333 34799999972
Q ss_pred ---cccccccccC---C----------HHHHHHHhhhhccCCcEEEEEeC----hhhHHHHHHHHHhc
Q 015704 326 ---GLFSVESKRC---N----------MSTIMLEMDRMLRPGGHVYIRDS----IDVMDELQEIGKAM 373 (402)
Q Consensus 326 ---~~~~~~~~~~---~----------~~~~l~e~~RvLrpgG~~~~~~~----~~~~~~~~~~~~~~ 373 (402)
.++.+-++.. . -..+|.++.|+|||||+++++.- .+-...++.++++.
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~ 265 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETY 265 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHS
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHC
Confidence 3343322110 0 13789999999999999999842 12234455555544
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5.9e-07 Score=81.52 Aligned_cols=139 Identities=13% Similarity=-0.064 Sum_probs=90.7
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccc-cCCCCCCCC
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMH-DWCEPFDTY 315 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~-~~~~~~~~~ 315 (402)
.|...+.. +...+|||+|||+|.|+..+. .+. .+.+.| +..+++++..+ |. ....+ +. ...+.
T Consensus 96 fY~~i~~~--~~p~~VLDlGCG~gpLal~~~-~~~-----~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~--~~~~~ 165 (253)
T 3frh_A 96 LYDFIFSA--ETPRRVLDIACGLNPLALYER-GIA-----SVWGCDIHQGLGDVITPFAREKDWDFTFALQDV--LCAPP 165 (253)
T ss_dssp HHHHHTSS--CCCSEEEEETCTTTHHHHHHT-TCS-----EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCT--TTSCC
T ss_pred HHHHHhcC--CCCCeEEEecCCccHHHHHhc-cCC-----eEEEEeCCHHHHHHHHHHHHhcCCCceEEEeec--ccCCC
Confidence 56555555 456789999999999999987 433 455555 44566655554 33 11121 21 11335
Q ss_pred CCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhh-----------HHHHHHHHHhcCceEEEeecCC
Q 015704 316 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDV-----------MDELQEIGKAMGWHVTLRETAE 384 (402)
Q Consensus 316 ~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~-----------~~~~~~~~~~~~w~~~~~~~~~ 384 (402)
|.+||+|.+.-+++||++.. ...+.++..-|+|+|.||--+..++ ...++..+..-.|.+......
T Consensus 166 ~~~~DvvLllk~lh~LE~q~--~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~- 242 (253)
T 3frh_A 166 AEAGDLALIFKLLPLLEREQ--AGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIG- 242 (253)
T ss_dssp CCBCSEEEEESCHHHHHHHS--TTHHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEET-
T ss_pred CCCcchHHHHHHHHHhhhhc--hhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecC-
Confidence 58999999998888886432 2344488889999998887762211 345666677788888777663
Q ss_pred CCCCceEEEEEEec
Q 015704 385 GPHASYRILTADKR 398 (402)
Q Consensus 385 ~~~~~~~~l~~~k~ 398 (402)
.|-+.+.+|.
T Consensus 243 ----nEl~~~i~~~ 252 (253)
T 3frh_A 243 ----TELIYLIKKN 252 (253)
T ss_dssp ----TEEEEEEEEC
T ss_pred ----ceEEEEEecC
Confidence 5667766663
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.8e-07 Score=90.14 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=71.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccC----CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRR----LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~----lp~~~~sfDlI~s~~ 82 (402)
++.+|||+|||+|.++..++.. .|+++|+++.++..+. +.+...+.. ..+...|+.. +++++++||+|+++.
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~-~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dP 364 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ-QNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 364 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECC
Confidence 4579999999999999999876 7999999998887665 444555554 4466677655 446667899999875
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... ...+++.+. .++|++.++++..
T Consensus 365 Pr~g----~~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 365 ARAG----AAGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp CTTC----CHHHHHHHH-HHCCSEEEEEESC
T ss_pred CCcc----HHHHHHHHH-hcCCCeEEEEECC
Confidence 4222 134555544 3789999999853
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.7e-07 Score=84.06 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=62.7
Q ss_pred CCCCeEEEECCc------cch-hHHHHcc--CCceEEeCCccchHHHHHHHHHHcCCCcEE-EeccccCCCCCCCCeeEE
Q 015704 9 RLLRVVMDAGCG------VAS-FGAYLLP--RNVITMSIAPKDVHENQIQFALERGAPAMV-AAFATRRLPYPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG------~G~-~~~~L~~--~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~-~~~d~~~lp~~~~sfDlI 78 (402)
.++.+|||+||| +|. .+..+.. ..|+++|+++. + . ...+ ..+|+..++++ ++||+|
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v----------~--~v~~~i~gD~~~~~~~-~~fD~V 127 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V----------S--DADSTLIGDCATVHTA-NKWDLI 127 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B----------C--SSSEEEESCGGGCCCS-SCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C----------C--CCEEEEECccccCCcc-CcccEE
Confidence 456799999994 465 2222322 37999999986 1 1 2345 77788777765 689999
Q ss_pred EecCcccccc-----c-----C-hHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 79 HCSRCRINWT-----R-----D-DGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 79 ~s~~~~~~~~-----~-----d-~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
+|+.. .++. + + ...+++++.++|||||.|++..+.
T Consensus 128 vsn~~-~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 128 ISDMY-DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp EECCC-CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred EEcCC-ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 98632 2221 0 1 247899999999999999998643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-07 Score=93.47 Aligned_cols=118 Identities=17% Similarity=0.279 Sum_probs=70.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Ccc-cccc-cCCCCCCCCCCcccEEEEcccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLI-GVMH-DWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~-~~~~-~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
.+|||+|||+|+|+.+++..|+ .|+++| ++.+++.+.++ |+- ...+ +..+.+..++..||+|++.--.
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~ga-----~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARKGA-----YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred CeEEEcccchhHHHHHHHHcCC-----eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 3599999999999999999987 366666 45666555443 441 1111 1111112235459999986221
Q ss_pred ccccc------cCCHHHHHHHhhhhccCCcEEEEEeC------hhhHHHHHHHHHhcCceEE
Q 015704 329 SVESK------RCNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 329 ~~~~~------~~~~~~~l~e~~RvLrpgG~~~~~~~------~~~~~~~~~~~~~~~w~~~ 378 (402)
-.-.. ..+...++.++.|+|||||++++... ....+.++..+.....++.
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~ 352 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLR 352 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 00000 01235888999999999999996643 2334556665554444433
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-07 Score=89.76 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=68.2
Q ss_pred CCCeEEEECCccchhHHHHcc-----CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||+|||+|.++..+++ ..++|+|+++.++..+ ....+...|....+ +.++||+|+++..+
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~-~~~~fD~Ii~NPPy 108 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE-PGEAFDLILGNPPY 108 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC-CSSCEEEEEECCCC
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcC-ccCCCCEEEECcCc
Confidence 456999999999999888774 2789999998776433 13445666665544 34689999998654
Q ss_pred ccccc---------C-h------------------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTR---------D-D------------------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~---------d-~------------------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..... + . ..++..+.++|+|||.+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 109 GIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 33221 1 1 2568899999999999999864
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.41 E-value=6.1e-08 Score=91.24 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=58.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc-
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA- 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~- 325 (402)
.+|||+|||+|.++..|++++. .|+++| ++.+++.+.++ |+ +..++.- +..++ .+||+|+++
T Consensus 30 ~~VLDiG~G~G~lt~~L~~~~~-----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D---~~~~~~~~fD~vv~nl 101 (285)
T 1zq9_A 30 DVVLEVGPGTGNMTVKLLEKAK-----KVVACELDPRLVAELHKRVQGTPVASKLQVLVGD---VLKTDLPFFDTCVANL 101 (285)
T ss_dssp CEEEEECCTTSTTHHHHHHHSS-----EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESC---TTTSCCCCCSEEEEEC
T ss_pred CEEEEEcCcccHHHHHHHhhCC-----EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcc---eecccchhhcEEEEec
Confidence 4699999999999999999976 566666 45666666554 22 3333332 23334 489999996
Q ss_pred ----------cccccccccCCHH-HHHHHh--hhhccCCcEEEE
Q 015704 326 ----------GLFSVESKRCNMS-TIMLEM--DRMLRPGGHVYI 356 (402)
Q Consensus 326 ----------~~~~~~~~~~~~~-~~l~e~--~RvLrpgG~~~~ 356 (402)
.+++|..+..... .+=+|+ +|+|||||.++.
T Consensus 102 py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~ 145 (285)
T 1zq9_A 102 PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC 145 (285)
T ss_dssp CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence 3444433221100 001455 489999998753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-07 Score=87.15 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=72.2
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecC
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
-+++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++.++... .+...|...++ +.+.||.|+++.
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~-~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~ 200 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY 200 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHH-HHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECC
Confidence 356889999999999988777643 6999999997775554 5555666643 35566766665 347899999764
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. .....++..+.++|||||++.+..
T Consensus 201 p-----~~~~~~l~~a~~~lk~gG~ih~~~ 225 (278)
T 3k6r_A 201 V-----VRTHEFIPKALSIAKDGAIIHYHN 225 (278)
T ss_dssp C-----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred C-----CcHHHHHHHHHHHcCCCCEEEEEe
Confidence 3 233567888889999999987754
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-07 Score=87.41 Aligned_cols=142 Identities=15% Similarity=0.085 Sum_probs=86.8
Q ss_pred CcceEEeccccchHHHHHHhhcCCCc--eEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDC--WVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~--~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~ 324 (402)
.-.+|||.|||+|+|+..+++...+- ...++.++| ++.++.+|... |+ +..++. ..+.+.+ ..||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~--D~l~~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ--DGLANLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEES--CTTSCCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEEC--CCCCccccCCccEEEE
Confidence 34579999999999999988763100 124667776 45666655543 44 222322 1223334 79999999
Q ss_pred ccccccccccC--------------CH-HHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCceEEE---ee
Q 015704 325 AGLFSVESKRC--------------NM-STIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHVTL---RE 381 (402)
Q Consensus 325 ~~~~~~~~~~~--------------~~-~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~~~~---~~ 381 (402)
.--|.++.... +. ...+.++.+.|||||++++..+. .....+++.+..-.|-..+ ..
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~lp~ 287 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPE 287 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECCG
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeCCh
Confidence 98876653210 01 15799999999999999888632 3356777766665663322 22
Q ss_pred cCCC-CCCceEEEEEEe
Q 015704 382 TAEG-PHASYRILTADK 397 (402)
Q Consensus 382 ~~~~-~~~~~~~l~~~k 397 (402)
.... ...+..|++.+|
T Consensus 288 ~~F~~~~~~~~i~vl~k 304 (344)
T 2f8l_A 288 TLFKSEQARKSILILEK 304 (344)
T ss_dssp GGSCC-CCCEEEEEEEE
T ss_pred hhccCCCCceEEEEEEC
Confidence 2222 334677777776
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-07 Score=93.10 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=73.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCC-CCCcccEEEE----c
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDT-YPRTYDLLHA----A 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~-~~~sfD~v~~----~ 325 (402)
.|||+|||+|+.+.+|++.-. -...|+++| ++.+++.+.++ |+ +..++.-...++. ++++||+|++ +
T Consensus 104 ~VLDlgaGpG~kt~~LA~~~~--~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~PcS 181 (464)
T 3m6w_A 104 RVLDLAAAPGGKTTHLAARMG--GKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCS 181 (464)
T ss_dssp EEEESSCTTCHHHHHHHHHTT--TCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCCC
T ss_pred EEEEEcCCcCHHHHHHHHhCC--CCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECCCcC
Confidence 599999999999999997621 011567777 55666655443 44 3333322222332 3579999995 2
Q ss_pred --ccccccccc------CCH-------HHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHHhc-CceEE
Q 015704 326 --GLFSVESKR------CNM-------STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAM-GWHVT 378 (402)
Q Consensus 326 --~~~~~~~~~------~~~-------~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~~~-~w~~~ 378 (402)
.++.+-++. .++ ..+|.++.|+|||||+++++. +.+-.+.++.++++- .|++.
T Consensus 182 g~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~ 254 (464)
T 3m6w_A 182 GEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLE 254 (464)
T ss_dssp CGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEE
T ss_pred CccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEE
Confidence 333322211 011 578999999999999999974 223345566666655 35544
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.6e-07 Score=87.50 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=67.5
Q ss_pred CCeEEEECCccchhHHHHcc-------------------CCceEEeCCccchHHHHHHHHHHc------------CCCcE
Q 015704 11 LRVVMDAGCGVASFGAYLLP-------------------RNVITMSIAPKDVHENQIQFALER------------GAPAM 59 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~-------------------~~v~~vdi~~~~~~~a~~~~a~~~------------~~~~~ 59 (402)
+.+|+|+|||+|..+..+.. -++...|+-..|...-........ .....
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 46899999999987776621 156667888888755443322110 00112
Q ss_pred EEec---cccCCCCCCCCeeEEEecCcccccccC--------------------------------------hHHHHHHH
Q 015704 60 VAAF---ATRRLPYPSQAFDLIHCSRCRINWTRD--------------------------------------DGILLLEV 98 (402)
Q Consensus 60 ~~~~---d~~~lp~~~~sfDlI~s~~~~~~~~~d--------------------------------------~~~~l~e~ 98 (402)
+..+ ..-.-.||+++||+|+|+.+ +||..+ ...+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~a-LHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFS-LHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESC-TTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecce-eeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22334578999999998865 888753 23468888
Q ss_pred HHhcCCCeEEEEEeC
Q 015704 99 NRMLRAGGYFAWAAQ 113 (402)
Q Consensus 99 ~r~LkpgG~li~~~~ 113 (402)
++.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999964
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.9e-06 Score=83.81 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=76.9
Q ss_pred eEEeccccchHHHHHHhhc---CCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCCCcccEEEEcccccc--
Q 015704 257 NVLDMRAGFGGFAAALIEQ---KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSV-- 330 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~---~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~-- 330 (402)
+|||+|||+|.|+..++++ +. +|.++| ++.+++.+ .. +..++.-..... .+..||+|++.--+..
T Consensus 42 ~vLD~gcGtG~~~~~~~~~~~~~~-----~i~gvDi~~~~~~~a--~~-~~~~~~D~~~~~-~~~~fD~Ii~NPPy~~~~ 112 (421)
T 2ih2_A 42 RVLEPACAHGPFLRAFREAHGTAY-----RFVGVEIDPKALDLP--PW-AEGILADFLLWE-PGEAFDLILGNPPYGIVG 112 (421)
T ss_dssp EEEEETCTTCHHHHHHHHHHCSCS-----EEEEEESCTTTCCCC--TT-EEEEESCGGGCC-CSSCEEEEEECCCCCCBS
T ss_pred EEEECCCCChHHHHHHHHHhCCCC-----eEEEEECCHHHHHhC--CC-CcEEeCChhhcC-ccCCCCEEEECcCccCcc
Confidence 7999999999999999975 23 455555 34444444 11 122221111111 1269999999522211
Q ss_pred --------cccc---------------C-CHHHHHHHhhhhccCCcEEEEEeChh-----hHHHHHHHHHhcCceEEEee
Q 015704 331 --------ESKR---------------C-NMSTIMLEMDRMLRPGGHVYIRDSID-----VMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 331 --------~~~~---------------~-~~~~~l~e~~RvLrpgG~~~~~~~~~-----~~~~~~~~~~~~~w~~~~~~ 381 (402)
+.+. . .....+..+.++|||||.+++-.+.. ....+++.+..-++....+-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i~~l 192 (421)
T 2ih2_A 113 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYL 192 (421)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEE
T ss_pred cccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCCeEEEEC
Confidence 1100 0 11256889999999999998876553 35678887777777333221
Q ss_pred c-C-CCCCCceEEEEEEe
Q 015704 382 T-A-EGPHASYRILTADK 397 (402)
Q Consensus 382 ~-~-~~~~~~~~~l~~~k 397 (402)
. . .+...+-.+++.+|
T Consensus 193 ~~~F~~~~~~~~il~~~k 210 (421)
T 2ih2_A 193 GEVFPQKKVSAVVIRFQK 210 (421)
T ss_dssp ESCSTTCCCCEEEEEEES
T ss_pred CCCCCCCCccEEEEEEEe
Confidence 1 1 12333456677776
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-07 Score=83.53 Aligned_cols=133 Identities=8% Similarity=0.032 Sum_probs=84.7
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCC-CCCC
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPF-DTYP 316 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~-~~~~ 316 (402)
.|...+... +...+|||+|||+|-|+..++.... ...+.+.| ++.+++++.++ |+-..+ ....-. .+.|
T Consensus 122 fY~~i~~~i-~~p~~VLDLGCG~GpLAl~~~~~~p---~a~y~a~DId~~~le~a~~~l~~~g~~~~~-~v~D~~~~~p~ 196 (281)
T 3lcv_B 122 FYRELFRHL-PRPNTLRDLACGLNPLAAPWMGLPA---ETVYIASDIDARLVGFVDEALTRLNVPHRT-NVADLLEDRLD 196 (281)
T ss_dssp HHHHHGGGS-CCCSEEEETTCTTGGGCCTTTTCCT---TCEEEEEESBHHHHHHHHHHHHHTTCCEEE-EECCTTTSCCC
T ss_pred HHHHHHhcc-CCCceeeeeccCccHHHHHHHhhCC---CCEEEEEeCCHHHHHHHHHHHHhcCCCceE-EEeeecccCCC
Confidence 565555543 3467899999999999999876621 12444444 34566655544 441111 111111 2234
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-----------hhHHHHHHHHHhcCceEEEeec
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-----------DVMDELQEIGKAMGWHVTLRET 382 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-----------~~~~~~~~~~~~~~w~~~~~~~ 382 (402)
..||+|.+.-+++||++.. ...+.++..-|+|||.||--+.. --....+..+..-.|.+.....
T Consensus 197 ~~~DvaL~lkti~~Le~q~--kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~ 271 (281)
T 3lcv_B 197 EPADVTLLLKTLPCLETQQ--RGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEI 271 (281)
T ss_dssp SCCSEEEETTCHHHHHHHS--TTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCcchHHHHHHHHHhhhhh--hHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeee
Confidence 8999999999999997532 23444999999999999987651 1134566667777886665554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-06 Score=88.09 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=71.6
Q ss_pred CCCeEEEECCccchhHHHHcc-----------------CCceEEeCCccchHHHHHHHHHHcCC---CcEEEeccccCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-----------------RNVITMSIAPKDVHENQIQFALERGA---PAMVAAFATRRLP 69 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-----------------~~v~~vdi~~~~~~~a~~~~a~~~~~---~~~~~~~d~~~lp 69 (402)
++.+|||.|||+|.++..+.+ ..+.|+|+++.++..+..... ..+. ...+..+|....+
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~-l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY-LHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH-HTTCCSSCCSEEECCTTTSC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH-HhCCCcCCCCEeeCCCCCCc
Confidence 456999999999988765542 378999999877655553333 2344 3346666655554
Q ss_pred CCCCCeeEEEecCcccccccC----------------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 70 YPSQAFDLIHCSRCRINWTRD----------------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 70 ~~~~sfDlI~s~~~~~~~~~d----------------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.. .+||+|+++..+...... ...++.++.+.|||||.+++.++
T Consensus 250 ~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 250 PS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 33 489999998765542211 13789999999999999998863
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=81.80 Aligned_cols=76 Identities=11% Similarity=-0.023 Sum_probs=58.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINW 87 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~ 87 (402)
++.+|||||||+|.++..+++. .|+++|+++.++..+..... ......+..+|+..+++++.+||.|+++.. +++
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~~~~fD~Iv~NlP-y~i 126 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLNKLDFNKVVANLP-YQI 126 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGGGSCCSEEEEECC-GGG
T ss_pred CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcccCCccEEEEeCc-ccc
Confidence 5679999999999999998865 79999999988866653333 223455778888888888888999998754 444
Q ss_pred c
Q 015704 88 T 88 (402)
Q Consensus 88 ~ 88 (402)
.
T Consensus 127 s 127 (295)
T 3gru_A 127 S 127 (295)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-08 Score=92.87 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=64.7
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC-CCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS-QAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~-~sfDlI~s~~~~~~ 86 (402)
++.+|||+|||+|.++..+++. .++++|+++.++..+..... ......+...|+..++++. ++| .|+++.. .+
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~P-y~ 104 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRY-KIVGNIP-YH 104 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEE-EEEEECC-SS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccCCCc-EEEEeCC-cc
Confidence 5669999999999999888764 78999999987744321111 1112346667888888764 689 6777643 22
Q ss_pred ccc-----------ChHHHH----HHHHHhcCCCeEEEEEe
Q 015704 87 WTR-----------DDGILL----LEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~~-----------d~~~~l----~e~~r~LkpgG~li~~~ 112 (402)
... +....+ +.+.|+|+|||.+.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 105 LSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred ccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 211 112223 55788888888776653
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=85.30 Aligned_cols=120 Identities=14% Similarity=0.187 Sum_probs=75.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
..|||+|||+|+++..++..+.. ..|+++| ++.+++.|.++ |+ +...+.-.+.++ ++ ++||+|+|.-
T Consensus 219 ~~vLD~gCGsG~~~i~~a~~~~~---~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~fD~Ii~np 294 (373)
T 3tm4_A 219 GSVLDPMCGSGTILIELALRRYS---GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS-QYVDSVDFAISNL 294 (373)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCC---SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG-GTCSCEEEEEEEC
T ss_pred CEEEEccCcCcHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-cccCCcCEEEECC
Confidence 45999999999999999998751 1355555 45566555443 54 344443334433 44 7999999975
Q ss_pred ccccc-cccCC----HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecC
Q 015704 327 LFSVE-SKRCN----MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 327 ~~~~~-~~~~~----~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
-+..- ..... ...++.++.|+| +|+.++++.+. +.+++.+.+..|+.......
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~---~~~~~~~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEK---KAIEEAIAENGFEIIHHRVI 352 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCH---HHHHHHHHHTTEEEEEEEEE
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCH---HHHHHHHHHcCCEEEEEEEE
Confidence 54331 11111 257889999999 55555555543 45556778888987765443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.2e-07 Score=84.32 Aligned_cols=110 Identities=14% Similarity=0.185 Sum_probs=73.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCc---ccccccCCCCCCCCC--CcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGL---IGVMHDWCEPFDTYP--RTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~---~~~~~~~~~~~~~~~--~sfD~v~~~~ 326 (402)
.|||+|||+|.|+-.++.+|+ ..|.++| ++.+++.+. ..|+ +..++.-+ ..|+ ..||.|++..
T Consensus 128 ~VlD~~aG~G~~~i~~a~~g~----~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~---~~~~~~~~~D~Vi~~~ 200 (278)
T 3k6r_A 128 LVVDMFAGIGHLSLPIAVYGK----AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFPGENIADRILMGY 200 (278)
T ss_dssp EEEETTCTTTTTTHHHHHHTC----CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCCCCSCEEEEEECC
T ss_pred EEEEecCcCcHHHHHHHHhcC----CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcH---HHhccccCCCEEEECC
Confidence 499999999999999998874 1345555 344443332 3355 33443322 3344 6899998762
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC-------hhhHHHHHHHHHhcCceEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-------IDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-------~~~~~~~~~~~~~~~w~~~~~ 380 (402)
.......|.+..++|||||++.+-+. .+..+.++++++...|++...
T Consensus 201 -------p~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 201 -------VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp -------CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred -------CCcHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEE
Confidence 12235678888899999999876431 234678888899999987653
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-07 Score=92.44 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=70.8
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-C---CCcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-Y---PRTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~---~~sfD~v~~ 324 (402)
.+|||+|||+|+|+..++..+. .|+.+| ++.+++.+.+. |+ +..++.-++.+.+ + +.+||+|++
T Consensus 211 ~~VLDlg~G~G~~~~~la~~~~-----~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALGFR-----EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHHEE-----EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeeccCHHHHHHHHhCC-----EEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 4699999999999999998743 566666 45555554443 43 2333322222111 1 368999999
Q ss_pred ccccccccc------cCCHHHHHHHhhhhccCCcEEEEEeCh------hhHHHHHHHHHhcCceE
Q 015704 325 AGLFSVESK------RCNMSTIMLEMDRMLRPGGHVYIRDSI------DVMDELQEIGKAMGWHV 377 (402)
Q Consensus 325 ~~~~~~~~~------~~~~~~~l~e~~RvLrpgG~~~~~~~~------~~~~~~~~~~~~~~w~~ 377 (402)
.--...... ..+...++.++.++|||||+++++... ...+.+++.+.....+.
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 350 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL 350 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 521111000 013457899999999999999998643 12444555555554333
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.9e-06 Score=79.44 Aligned_cols=103 Identities=20% Similarity=0.258 Sum_probs=65.1
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.+++.++.+ .+.++|+.. ++....+.. ...+.+......+++...+++++||+|+|.. .
T Consensus 73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~-a 149 (277)
T 3evf_A 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITFKDKTDIHRLEPVKCDTLLCDI-G 149 (277)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEEECSCCTTTSCCCCCSEEEECC-C
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEEeccceehhcCCCCccEEEecC-c
Confidence 35568999999999999987654 456677763 221000000 0011233444445555667788999999864 3
Q ss_pred cc----cccChH--HHHHHHHHhcCCC-eEEEEEeCC
Q 015704 85 IN----WTRDDG--ILLLEVNRMLRAG-GYFAWAAQP 114 (402)
Q Consensus 85 ~~----~~~d~~--~~l~e~~r~Lkpg-G~li~~~~~ 114 (402)
.+ +.+... .+++.+.++|+|| |.|++..+.
T Consensus 150 pnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 150 ESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 44 332221 3578889999999 999999764
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-07 Score=91.64 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=71.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCC-C---CCcccEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDT-Y---PRTYDLLH 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~-~---~~sfD~v~ 323 (402)
.+|||+|||+|+|+..++..|+ ..|+++| ++.+++.+.+. |+ +..++.-+..+.+ + +.+||+|+
T Consensus 219 ~~VLDl~~G~G~~~~~la~~g~----~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 219 DRVLDVFTYTGGFAIHAAIAGA----DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp CEEEETTCTTTHHHHHHHHTTC----SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHCCC----CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 4699999999999999999864 1455555 34455444332 43 2223222222111 1 36899999
Q ss_pred Eccccccccc------cCCHHHHHHHhhhhccCCcEEEEEeCh------hhHHHHHHHHHhcCceEEEe
Q 015704 324 AAGLFSVESK------RCNMSTIMLEMDRMLRPGGHVYIRDSI------DVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 324 ~~~~~~~~~~------~~~~~~~l~e~~RvLrpgG~~~~~~~~------~~~~~~~~~~~~~~w~~~~~ 380 (402)
+.--...... ..+...++.++.++|||||++++.... ...+.+.+.+.....++...
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i 363 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 363 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 9521111000 023468999999999999999988542 22444555555565555443
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.1e-07 Score=87.81 Aligned_cols=43 Identities=21% Similarity=0.401 Sum_probs=36.1
Q ss_pred CC-CcccEEEEccccccccccC-----------------------------------CHHHHHHHhhhhccCCcEEEEE
Q 015704 315 YP-RTYDLLHAAGLFSVESKRC-----------------------------------NMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 315 ~~-~sfD~v~~~~~~~~~~~~~-----------------------------------~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
|| +|||+||++..|+.+.+.. |...+|+...|.|||||.++++
T Consensus 146 fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~ 224 (374)
T 3b5i_A 146 FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV 224 (374)
T ss_dssp SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 68 8999999999999876432 3345688999999999999998
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-07 Score=91.90 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=72.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC-CCCcccEEEEcc--
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT-YPRTYDLLHAAG-- 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~-~~~sfD~v~~~~-- 326 (402)
.|||+|||+|+.+.+|++.-. -...|+++| ++.+++.+.++ |+ +..++.-...++. ++++||+|++.-
T Consensus 108 ~VLDlcaGpGgkt~~lA~~~~--~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPC 185 (456)
T 3m4x_A 108 KVLDLCAAPGGKSTQLAAQMK--GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPC 185 (456)
T ss_dssp EEEESSCTTCHHHHHHHHHHT--TCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCC
T ss_pred EEEEECCCcCHHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCC
Confidence 599999999999999987510 011466666 45555544433 44 2233322222222 357999999731
Q ss_pred ----ccccccc------cCCH-------HHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHHhcCceEE
Q 015704 327 ----LFSVESK------RCNM-------STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 327 ----~~~~~~~------~~~~-------~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~~~~w~~~ 378 (402)
++.+-++ ..++ ..+|.++.|+|||||+++.+. +.+-.+.++.++++..+++.
T Consensus 186 Sg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l~ 258 (456)
T 3m4x_A 186 SGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIE 258 (456)
T ss_dssp CCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEE
T ss_pred CCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEEE
Confidence 2222110 0000 278999999999999999874 22335567777777665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 402 | ||||
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 7e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 5e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.001 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.002 |
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 44.9 bits (105), Expect = 7e-06
Identities = 19/123 (15%), Positives = 41/123 (33%)
Query: 236 YWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPV 295
Y+N+ S++ WK K +++D G+G L+ + +
Sbjct: 9 YYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEA 68
Query: 296 IYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVY 355
L+ ++ E T D A + T++ +M ++ GG +
Sbjct: 69 RELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128
Query: 356 IRD 358
+
Sbjct: 129 CFE 131
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.0 bits (97), Expect = 5e-05
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 6/136 (4%)
Query: 221 DAFIARKELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCW 280
+ R E KAE + EI + K ++R VLD+ G G L E+ ++
Sbjct: 14 TIYRRRIERVKAEIDFVEEIFKED------AKREVRRVLDLACGTGIPTLELAERGYEVV 67
Query: 281 VMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTI 340
+++ +R L + +D + + ++ +
Sbjct: 68 GLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKL 127
Query: 341 MLEMDRMLRPGGHVYI 356
++ L+PGG
Sbjct: 128 FSKVAEALKPGGVFIT 143
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.1 bits (87), Expect = 0.001
Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 3/140 (2%)
Query: 14 VMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQ 73
+D CG + L P+ T ++ ++ + A ++
Sbjct: 41 YLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR 100
Query: 74 AFDLIHCSRCRINWTRDDGIL---LLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEML 130
FDLI C N+ D L V+ L+ GG F + YK + +
Sbjct: 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYD 160
Query: 131 DLTTRLCWELVKKEGYIAIW 150
D WE ++ ++++
Sbjct: 161 DDEVFYYWENQFEDDLVSMY 180
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 37.3 bits (85), Expect = 0.002
Identities = 14/130 (10%), Positives = 38/130 (29%), Gaps = 2/130 (1%)
Query: 228 ELFKAESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPV 287
+L +A+ Y + + + + + LD+ G G L + + W +++
Sbjct: 12 KLIRADVDY-KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQE 70
Query: 288 SGFNTLPVIYDRGLIGVMHDW-CEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDR 346
+GL + + + + + ++ +
Sbjct: 71 MLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSN 130
Query: 347 MLRPGGHVYI 356
L+ GG
Sbjct: 131 HLKEGGVFIF 140
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 402 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.72 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.65 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.64 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.62 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.61 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.6 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.58 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.56 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.56 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.56 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.55 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.55 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.55 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.54 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.54 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.53 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.53 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.53 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.53 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.52 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.51 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.51 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.5 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.49 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.49 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.48 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.48 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.45 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.45 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.45 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.44 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.41 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.4 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.4 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.39 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.39 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.39 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.39 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.37 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.36 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.35 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.35 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.33 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.32 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.31 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.31 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.3 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.3 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.3 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.28 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.27 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.27 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.26 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.25 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.25 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.25 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.24 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.24 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.23 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.22 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.22 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.21 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.18 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.17 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.16 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.16 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.16 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.16 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.15 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.11 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.1 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.1 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.08 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.07 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.06 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.06 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.05 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.03 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.03 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.03 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.02 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.01 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.99 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.9 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.89 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.88 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.87 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.87 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.84 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.82 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.79 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.72 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.7 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.69 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.69 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.66 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.66 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.66 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.65 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.62 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.61 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.56 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.56 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.52 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.52 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.51 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.48 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.48 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.41 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.39 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.37 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.36 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.33 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.33 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.24 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.21 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.18 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.18 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.17 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.17 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.17 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.13 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.12 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.12 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.09 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.07 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.07 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.0 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.97 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.96 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 97.95 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.93 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.92 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.9 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.89 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.87 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.85 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.8 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.8 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.78 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.75 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.75 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.7 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.7 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.7 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.65 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.63 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.59 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.55 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.49 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.46 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.46 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.41 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.39 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.39 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.36 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.29 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.22 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.21 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.21 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.18 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.18 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.15 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.12 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.08 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.05 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.04 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.03 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 96.98 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.78 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.72 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.5 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.42 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 96.4 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.14 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 95.91 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 95.85 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 95.77 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.77 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.68 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 95.66 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 95.63 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.46 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 95.27 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 94.89 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.85 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 94.84 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.71 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 94.63 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.52 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 94.47 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.41 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 94.08 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 94.0 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 93.36 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.32 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.02 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.97 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.89 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.82 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.77 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.48 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.38 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.35 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.01 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.43 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.1 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.06 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.8 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 89.89 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 88.5 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.35 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 88.19 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 88.09 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.04 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 86.64 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 86.61 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 86.58 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 86.24 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 86.2 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 85.42 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 85.24 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.97 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 84.82 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 84.48 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 83.36 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 82.09 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 81.96 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 81.2 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 80.42 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 80.06 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.72 E-value=1.2e-17 Score=150.27 Aligned_cols=103 Identities=15% Similarity=0.308 Sum_probs=84.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+++.+|||||||+|.++..+++. +++++|+++.++..++ +.+...+.+ ..+.+.+.+.+|+++++||+|+|..+++
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~-~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~ 92 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVAR-AFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH 92 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred CCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhh-hccccccccccccccccccccccccccccccccccccc
Confidence 35689999999999999998876 7999999998887665 334444444 4477789999999999999999998755
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+ +|+..++++++++|||||++++.++
T Consensus 93 ~~-~d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 93 HF-PNPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp GC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 54 5899999999999999999999753
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=2e-17 Score=149.62 Aligned_cols=103 Identities=25% Similarity=0.398 Sum_probs=87.3
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+++.+|||||||+|.++..++++ .++|+|+|+.++..++ +.+...+.+ ..+.++|++++|+++++||+|+|..+++
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~-~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 93 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH 93 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhh-hhhcccccccccccccccccccccccccceeeeeceee
Confidence 47789999999999999999886 8999999998887766 455555554 4577788999999999999999988755
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
| .+|+..+++++.|+|||||+++++.+
T Consensus 94 ~-~~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 94 H-FSDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp G-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-ccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 4 55899999999999999999999753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1e-16 Score=143.23 Aligned_cols=103 Identities=20% Similarity=0.357 Sum_probs=86.5
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.+..+|||||||+|.++..+++. .++|+|+++.++..+. +.+...+........|+..+|+++++||+|+|..+++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEecchhh
Confidence 45679999999999999999876 7899999998887765 44445556666777789999999999999999988777
Q ss_pred cc-cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 87 WT-RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~-~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+. .+...+++++.++|||||.+++..
T Consensus 115 ~~~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 115 FEPLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 64 256789999999999999999885
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=1.5e-16 Score=143.96 Aligned_cols=95 Identities=25% Similarity=0.399 Sum_probs=79.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEE-ccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHA-AGLFSVESK 333 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~-~~~~~~~~~ 333 (402)
+|||+|||+|.++..|++.|+ .|+++| ++.|++.|.+++....+....+.++ || ++||+|+| .++++|+++
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~-----~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~-~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGF-----EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTC-----EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHCSC
T ss_pred EEEEECCCCchhcccccccce-----EEEEeecccccccccccccccccccccccccc-cccccccceeeecchhhhhhh
Confidence 499999999999999999987 677777 6789999999987544444456654 77 89999998 578999875
Q ss_pred cCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 334 RCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 334 ~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+..+|+|+.|+|||||+++++.++
T Consensus 119 ---~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 119 ---KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ---HHHHHHHHHhhcCcCcEEEEEECC
Confidence 589999999999999999999754
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=1.5e-16 Score=144.04 Aligned_cols=101 Identities=21% Similarity=0.383 Sum_probs=83.6
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.+..++.+|||+|||+|.++..+++. .|+|+|+++.++ +.|++++... +..++++++|+++++||+|+|...
T Consensus 38 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l-----~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~ 111 (246)
T d2avna1 38 EYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEML-----EVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGD 111 (246)
T ss_dssp HHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHH-----HHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSS
T ss_pred HhcCCCCEEEEECCCCchhcccccccceEEEEeecccccc-----cccccccccc-cccccccccccccccccceeeecc
Confidence 34556789999999999999999887 689998887655 5556665443 456788999999999999998765
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++|+.+|+..+|+++.|+|||||.+++++
T Consensus 112 ~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 112 VLSYVENKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp HHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence 56667799999999999999999999996
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.62 E-value=1.9e-16 Score=142.30 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=80.8
Q ss_pred HHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC
Q 015704 244 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP 316 (402)
Q Consensus 244 y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~ 316 (402)
..+..++..+. +|||+|||+|.++..|+++|+ +|+++| ++++++.|.++ |. +..++...+.++ ||
T Consensus 7 ll~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~ 78 (231)
T d1vl5a_ 7 LMQIAALKGNE--EVLDVATGGGHVANAFAPFVK-----KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FT 78 (231)
T ss_dssp HHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SC
T ss_pred HHHhcCCCCcC--EEEEecccCcHHHHHHHHhCC-----EEEEEECCHHHHhhhhhccccccccccccccccccccc-cc
Confidence 33444444432 599999999999999999987 566766 56777776544 43 455655566654 77
Q ss_pred -CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 317 -RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 317 -~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++||+|+|.++++|+++ +..+|.|+.|+|||||++++.+
T Consensus 79 ~~~fD~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 79 DERFHIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp TTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccccCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 89999999999999875 6899999999999999999975
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.61 E-value=2.8e-16 Score=141.95 Aligned_cols=99 Identities=20% Similarity=0.289 Sum_probs=79.0
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCCCC-Cccc
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDTYP-RTYD 320 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~~~-~sfD 320 (402)
.++++. +|||+|||+|.++..|+++++ +|+++| ++.|++.|.++ |+ +..+....+.+ +|| ++||
T Consensus 13 ~~~~~~--rILDiGcGtG~~~~~la~~~~-----~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 84 (234)
T d1xxla_ 13 ECRAEH--RVLDIGAGAGHTALAFSPYVQ-----ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFD 84 (234)
T ss_dssp TCCTTC--EEEEESCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEE
T ss_pred CCCCCC--EEEEeCCcCcHHHHHHHHhCC-----eEEEEeCChhhhhhhhhhhcccccccccccccccccc-cccccccc
Confidence 444442 499999999999999999986 677777 67788776554 33 44455455664 477 8999
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|+|..+|+|+++ +..+|.|+.|+|||||++++.+
T Consensus 85 ~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 85 IITCRYAAHHFSD---VRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp EEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeeceeecccC---HHHHHHHHHHeeCCCcEEEEEE
Confidence 9999999999874 6999999999999999999975
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.60 E-value=1.1e-15 Score=142.08 Aligned_cols=103 Identities=18% Similarity=0.305 Sum_probs=85.7
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||||||+|.++..|+++ .|+++|+++.++..+. +.+...++. ..+..+|..++|+++++||+|+|..+
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~-~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE-EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhh-cccccccccccccccccccccccccccccchhhccch
Confidence 36789999999999999888764 6899999998876665 444445543 45777899999999999999999988
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++|+. ++..+++++.++|||||.++++.+
T Consensus 145 l~h~~-d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 145 FLHSP-DKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp GGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcc-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 77765 899999999999999999999853
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=6.3e-16 Score=138.00 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=78.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
+|||+|||+|.++..|++.|+ +|+++| +++|++.|.++ +. +..+..-.+.+ +++ ++||+|+|+.+|+
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~-----~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l-~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF-----EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL-SFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC-CSCTTCEEEEEEESCGG
T ss_pred EEEEECCCcchhhhhHhhhhc-----ccccccccccchhhhhhhhccccccccccccccccc-cccCcCceEEEEecchh
Confidence 599999999999999999987 677777 67888777665 33 33344434454 466 8999999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
|+++ .++..+|+|+.|+|||||.+++....
T Consensus 114 ~~~~-~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEP-LELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCCh-hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9974 35789999999999999999998754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.56 E-value=7.5e-15 Score=134.29 Aligned_cols=128 Identities=15% Similarity=0.158 Sum_probs=95.7
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC-CcccEEEEc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
...-.+|||+|||+|.++..|+.+++. +|+.+| ++.+++.|.++ ..+..++...+.++ ++ ++||+|+|.
T Consensus 91 ~~~~~~vLD~GcG~G~~t~~ll~~~~~----~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~I~~~ 165 (254)
T d1xtpa_ 91 GHGTSRALDCGAGIGRITKNLLTKLYA----TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQ 165 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHHCS----EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEEEEEE
T ss_pred CCCCCeEEEecccCChhhHHHHhhcCc----eEEEEcCCHHHHHhhhccccccccceeEEccccccc-cCCCccceEEee
Confidence 345567999999999999999877542 566666 57788888765 22444444445544 44 899999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------------hhHHHHHHHHHhcCceEEEeecCCC
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------------DVMDELQEIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------------~~~~~~~~~~~~~~w~~~~~~~~~~ 385 (402)
.+|+|+++. +...+|.++.|+|||||+++|+++. ...+.+++++++-.+++...+...+
T Consensus 166 ~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q~~ 240 (254)
T d1xtpa_ 166 WTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEE 240 (254)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECTT
T ss_pred ccccccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEeeCC
Confidence 999999863 4578999999999999999998642 1256788888888898876655433
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.56 E-value=1.3e-15 Score=136.72 Aligned_cols=115 Identities=21% Similarity=0.293 Sum_probs=88.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc--ccccccCCCCCCCCCCcccEEEEccccccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL--IGVMHDWCEPFDTYPRTYDLLHAAGLFSVESK 333 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~--~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~ 333 (402)
+|||+|||+|.++..|+++|. .|+++| ++++++.+..+.- +..++...+.++ ++++||+|+|.+||+|+.+
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~-----~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFN-----DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCS-----CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCSS
T ss_pred cEEEEeCCCcHHHHHHHHcCC-----eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecCC
Confidence 499999999999999999987 455555 5678888876632 444554444433 4689999999999999874
Q ss_pred cCCHHHHHHHhh-hhccCCcEEEEEeCh---------------------------------hhHHHHHHHHHhcCceEEE
Q 015704 334 RCNMSTIMLEMD-RMLRPGGHVYIRDSI---------------------------------DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 334 ~~~~~~~l~e~~-RvLrpgG~~~~~~~~---------------------------------~~~~~~~~~~~~~~w~~~~ 379 (402)
+..+|.|+. |+|||||+++++.++ +..+.++.++.+...++..
T Consensus 97 ---~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 97 ---PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp ---HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ---HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 689999997 899999999998431 1256778888888777654
Q ss_pred e
Q 015704 380 R 380 (402)
Q Consensus 380 ~ 380 (402)
.
T Consensus 174 ~ 174 (225)
T d2p7ia1 174 R 174 (225)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=9.4e-15 Score=130.76 Aligned_cols=126 Identities=20% Similarity=0.228 Sum_probs=94.6
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------ccccccCCCCCCCCCCcccEEEEcc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
.-..|||+|||+|.++..|++++.. .|+.+| +++|++.|.++.- +..++...+.++..+++||+|+|..
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~----~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFR----EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCS----EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCC----EEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence 3456999999999999998776531 566777 6788888877632 3334444455553338999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeCh---------------hhHHHHHHHHHhcCceEEEeecCC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---------------DVMDELQEIGKAMGWHVTLRETAE 384 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~---------------~~~~~~~~~~~~~~w~~~~~~~~~ 384 (402)
+++|+++. +...+|.++.|+|||||++++.+.. ...+.+++++++-.+++...+...
T Consensus 136 ~l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~ 207 (222)
T d2ex4a1 136 VIGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE 207 (222)
T ss_dssp CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeC
Confidence 99999863 4568999999999999999998632 136788899998889877655433
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=5.3e-15 Score=134.42 Aligned_cols=102 Identities=22% Similarity=0.263 Sum_probs=83.4
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.++.+|||+|||+|.++..|++. .++|+|+++.++..++ +.+.+.+....+.++|+++++++ ++||+|+|....++
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~-~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVAR-RKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccc-cccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 35578999999999999999876 7999999998887666 44555666777888899999987 58999999754455
Q ss_pred cc--cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 87 WT--RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 87 ~~--~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+. ++...+|++++++|||||++++..
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 44 235689999999999999999985
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.55 E-value=1.6e-15 Score=140.87 Aligned_cols=94 Identities=23% Similarity=0.311 Sum_probs=75.4
Q ss_pred ceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+|||+|||+|+++..|+++ |+ +|+++| ++.+++.+.++ |+ +.++....+.+ +|| ++||+|+|.
T Consensus 69 ~~vLDiGcG~G~~~~~la~~~~~-----~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~~~~~sfD~V~~~ 142 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRKFGV-----SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQ 142 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEE
T ss_pred CEEEEeCCCCcHHHhhhhccCCc-----EEEEEeccchhhhhhhcccccccccccccccccccccc-cccccccchhhcc
Confidence 36999999999999999987 65 566666 55666655554 54 45555555665 467 899999999
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+|+|+++ +..+|.|+.|+|||||++++.+
T Consensus 143 ~~l~h~~d---~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 143 DAFLHSPD---KLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp SCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhccC---HHHHHHHHHHhcCCCcEEEEEE
Confidence 99999875 5899999999999999999986
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=4.5e-15 Score=134.90 Aligned_cols=101 Identities=11% Similarity=0.050 Sum_probs=82.4
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||||||+|.++..++++ .++|+|+++.++..+. +.+...++. ..+...|+.++ +++++||+|+|..+
T Consensus 32 ~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~v~~~~~ 109 (245)
T d1nkva_ 32 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDAAGY-VANEKCDVAACVGA 109 (245)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCCTTC-CCSSCEEEEEEESC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhhhHHhhc-cccCceeEEEEEeh
Confidence 35789999999999999888754 7899999998876664 455556654 35677788877 46789999999988
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++|+. |+..++++++++|||||.+++..
T Consensus 110 ~~~~~-d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 110 TWIAG-GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp GGGTS-SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhccC-CHHHHHHHHHHHcCcCcEEEEEe
Confidence 66655 89999999999999999999985
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=3.5e-15 Score=131.92 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=84.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCCCcccEEEEccccccccccC
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDLLHAAGLFSVESKRC 335 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~ 335 (402)
+|||+|||+|.++..|++. +++| ++.+++.+.++++ ..+....+.++..+++||+|+|+++|+|+++
T Consensus 39 ~vLDiGcG~G~~~~~~~~~---------~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d-- 106 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKIK---------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVDD-- 106 (208)
T ss_dssp CEEEETCTTSTTHHHHTCC---------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred eEEEECCCCcccccccceE---------EEEeCChhhccccccccc-ccccccccccccccccccccccccccccccc--
Confidence 4999999999999888532 3445 5789999999876 3445555665533389999999999999974
Q ss_pred CHHHHHHHhhhhccCCcEEEEEeCh------------------------hhHHHHHHHHHhcCceEE
Q 015704 336 NMSTIMLEMDRMLRPGGHVYIRDSI------------------------DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 336 ~~~~~l~e~~RvLrpgG~~~~~~~~------------------------~~~~~~~~~~~~~~w~~~ 378 (402)
+..+|.|+.|+|||||.+++.+.+ ...+.+..++++..++..
T Consensus 107 -~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 107 -PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred -cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEE
Confidence 789999999999999999998631 124667788888777643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=1.3e-14 Score=128.29 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=77.6
Q ss_pred CCeEEEECCccchhHHHHccCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccccccC
Q 015704 11 LRVVMDAGCGVASFGAYLLPRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRINWTRD 90 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~~~~d 90 (402)
..+|||||||+|.++..+. .++|+|+++.++ +.+++++ ..+...+.+++|+++++||+|+|+.+++|+ ++
T Consensus 37 ~~~vLDiGcG~G~~~~~~~--~~~giD~s~~~~-----~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~-~d 106 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK--IKIGVEPSERMA-----EIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFV-DD 106 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT--CCEEEESCHHHH-----HHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGS-SC
T ss_pred CCeEEEECCCCcccccccc--eEEEEeCChhhc-----ccccccc--cccccccccccccccccccccccccccccc-cc
Confidence 4589999999999988885 468999887654 5555553 456778889999999999999999886666 58
Q ss_pred hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 91 DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 91 ~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+..++++++++|+|||.+++.++
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEec
Confidence 99999999999999999999974
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.53 E-value=1.8e-14 Score=129.12 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=77.6
Q ss_pred ccCCCCCeEEEECCccchhHHHHccC------CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEE
Q 015704 6 TWIRLLRVVMDAGCGVASFGAYLLPR------NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIH 79 (402)
Q Consensus 6 ~~~~~~~~VLDiGcG~G~~~~~L~~~------~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~ 79 (402)
.+..++.+|||+|||+|..+..+++. +++|+|+|+.|+..+....+ +.+....+.....+..+++.+.+|+|+
T Consensus 35 ~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~-~~~~~~~~~~~~~d~~~~~~~~~d~i~ 113 (225)
T d1im8a_ 35 RFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-AYHSEIPVEILCNDIRHVEIKNASMVI 113 (225)
T ss_dssp HHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH-TSCCSSCEEEECSCTTTCCCCSEEEEE
T ss_pred HhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH-hhcccchhhhccchhhccccccceeeE
Confidence 34567789999999999998877642 68999999988876653333 333333322222233445567899999
Q ss_pred ecCcccccc-cChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCRINWT-RDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~-~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+.+++++. +++..++++++|+|||||.+++...
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 988766654 3568999999999999999999864
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.53 E-value=8.4e-15 Score=131.33 Aligned_cols=101 Identities=8% Similarity=0.055 Sum_probs=80.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC-CcccEEEEcccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSV 330 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~ 330 (402)
.|||+|||+|..+..|++.-. -...+|+++| ++.|++.|.++ +....++-.+.+..++| ..||+|+|+.+++|
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~-~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~~ 120 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNIN-QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQF 120 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCC-CSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGGG
T ss_pred EEEEeccchhhHHHHHHHhhc-CCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeeccc
Confidence 599999999999999986410 0123888888 78999998875 44444444455667788 89999999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+. ..++..+|+||.|+|||||.+++.|.
T Consensus 121 ~~-~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 121 LP-PEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp SC-GGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cC-hhhHHHHHHHHHHhCCCCceeecccc
Confidence 86 34778999999999999999999863
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.53 E-value=4.2e-15 Score=135.09 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcc-cCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccC
Q 015704 236 YWNEIIESYVRALH-WKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDW 308 (402)
Q Consensus 236 ~w~~~~~~y~~~~~-~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~ 308 (402)
.+...++.+.+.+. .......+|||+|||+|.++..|+++|+ +|+++| +++|+..|.++ ++ +..+..-
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-----~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d 96 (251)
T d1wzna1 22 RVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-----EVVGLDLHEEMLRVARRKAKERNLKIEFLQGD 96 (251)
T ss_dssp THHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTCCCEEEESC
T ss_pred hHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-----EEEEEeeccccccccccccccccccchheehh
Confidence 33334444444443 2233445799999999999999999987 677777 67888877765 43 3344443
Q ss_pred CCCCCCCCCcccEEEEc-cccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 309 CEPFDTYPRTYDLLHAA-GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 309 ~~~~~~~~~sfD~v~~~-~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+.+ +++++||+|+|. +++.|+. ..++..+|.++.|+|||||++++..
T Consensus 97 ~~~l-~~~~~fD~I~~~~~~~~~~~-~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 97 VLEI-AFKNEFDAVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp GGGC-CCCSCEEEEEECSSGGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhc-ccccccchHhhhhhhhhcCC-hHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4554 356899999996 6888875 3467899999999999999999964
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=6.5e-15 Score=133.79 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=79.1
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCC
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFD 313 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~ 313 (402)
...+.+.+..|. +|||+|||+|.++..|+++ |+ .|+++| ++.+++.+.++ |+ +...+.-.+.+
T Consensus 24 ~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~-----~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~- 95 (245)
T d1nkva_ 24 TLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGI-----TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY- 95 (245)
T ss_dssp HHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCC-----EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-
T ss_pred HHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCC-----EEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-
Confidence 344555666553 4999999999999999876 54 455555 56777666554 65 44455433443
Q ss_pred CCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 314 TYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 314 ~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
..+++||+|+|..+++|+.+ +..+|.|+.|+|||||++++++.
T Consensus 96 ~~~~~fD~v~~~~~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 96 VANEKCDVAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp CCSSCEEEEEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cccCceeEEEEEehhhccCC---HHHHHHHHHHHcCcCcEEEEEec
Confidence 23489999999999999885 48999999999999999999863
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=6.3e-15 Score=135.88 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=82.2
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+..++.+|||+|||+|.++..+++. .++|+|+++.++ +.++++.....+..+|+.++|+++++||+|++..
T Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~-----~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~ 155 (268)
T d1p91a_ 81 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAI-----KAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIY 155 (268)
T ss_dssp SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHH-----HHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhh-----hhhhcccccccceeeehhhccCCCCCEEEEeecC
Confidence 3567789999999999999888765 567888887655 5555665566788889999999999999999876
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHH
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEE 124 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~ 124 (402)
..++ ++|+.|+|||||.+++++ |..+...+++.
T Consensus 156 ~~~~--------~~e~~rvLkpgG~l~~~~-p~~~~l~el~~ 188 (268)
T d1p91a_ 156 APCK--------AEELARVVKPGGWVITAT-PGPRHLMELKG 188 (268)
T ss_dssp CCCC--------HHHHHHHEEEEEEEEEEE-ECTTTTHHHHT
T ss_pred CHHH--------HHHHHHHhCCCcEEEEEe-eCCcchHHHHH
Confidence 5333 578999999999999997 45666665543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.51 E-value=1.4e-14 Score=131.48 Aligned_cols=106 Identities=20% Similarity=0.292 Sum_probs=83.5
Q ss_pred cccCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecC
Q 015704 5 NTWIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 5 ~~~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
...+.++.+|||+|||+|.++..++++ .++|+|+|+.|+..++ +.+...+.+..+.++|+..++++ ++||+|+|..
T Consensus 32 ~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~ 109 (246)
T d1y8ca_ 32 VENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE-NKFRSQGLKPRLACQDISNLNIN-RKFDLITCCL 109 (246)
T ss_dssp HTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHH-HHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECT
T ss_pred HHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcc-ccccccCccceeeccchhhhccc-ccccccceee
Confidence 344456789999999999999999986 6999999998887765 44455666777888888888764 6899999864
Q ss_pred -cccccc--cChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 -CRINWT--RDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 -~~~~~~--~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++.|+. .++..++++++++|||||.|++..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 333433 245679999999999999999874
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.2e-15 Score=130.82 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=81.2
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|||+|||+|.++..++.. .|+++|+++.++..+.. .+...+... .+.+.|++++++++++||+|+|..+++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~-~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKT-YLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHH-HTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccc-ccccccccccccccccccccccccccccccccccccc
Confidence 4568999999999999887654 68999999888766653 222333333 577888999999899999999999877
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.++ ...++++++++|||||.+++..
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence 76632 3589999999999999999985
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.50 E-value=3.3e-14 Score=124.80 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=82.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||||||+|..+..++++ .++++|+++.++..+. +.+.+.+... .+...|...+++ +++||+|+|+.+++|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~-~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLE-RIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHH-HHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence 4569999999999999999987 7899999998887665 4445556654 456667777775 578999999988777
Q ss_pred cccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 87 WTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+..+ ...+++++.++|+|||++++.++
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 6543 46899999999999999999853
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.49 E-value=9.8e-15 Score=132.57 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=76.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEc-ccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAA-GLF 328 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~-~~~ 328 (402)
++|||+|||+|.++..|+++|+ +|+++| ++.|++.|.+| |+ +..+..-...++ ++++||+|.|. +++
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~-----~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK-----NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-INRKFDLITCCLDST 112 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS-----EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CSCCEEEEEECTTGG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC-----ccEeeccchhhhhhccccccccCccceeeccchhhhc-ccccccccceeeeee
Confidence 4699999999999999999987 778888 68899888765 43 333433223322 35799999986 789
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.|+.+..++..+|.++.|.|||||.|++.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 99887777889999999999999999985
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.49 E-value=2e-14 Score=131.15 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=84.0
Q ss_pred cccccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCC-CCCCee
Q 015704 3 QINTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPY-PSQAFD 76 (402)
Q Consensus 3 li~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~-~~~sfD 76 (402)
+|..+..++.+|||+|||+|..+..+++. .++|+|+|+.++..+. +.+...+. ...+...|+...++ .+++||
T Consensus 17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~-~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD 95 (252)
T d1ri5a_ 17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDAR-VRARNMKRRFKVFFRAQDSYGRHMDLGKEFD 95 (252)
T ss_dssp HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHH-HHHHTSCCSSEEEEEESCTTTSCCCCSSCEE
T ss_pred HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHhcCCCcceEEEEcchhhhcccccccce
Confidence 45666778899999999999888887653 5899999998887665 33333333 24466778766665 467899
Q ss_pred EEEecCcccccccC---hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 77 LIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 77 lI~s~~~~~~~~~d---~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|+|..+++|...+ ...+++++.++|||||+++++++
T Consensus 96 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 96 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 99998887776543 35799999999999999999863
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.48 E-value=4.6e-14 Score=130.91 Aligned_cols=101 Identities=13% Similarity=0.199 Sum_probs=81.4
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..+++. .++|+|+++.++..+. +.....+....+...|+..++++ ++||+|+|+.+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~~ 103 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLEGDATEIELN-DKYDIAICHAF 103 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH-HHHHSSSSEEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh-ccccccccccccccccccccccc-CCceEEEEehh
Confidence 35689999999999999888763 5899999988776654 33444444556777888888876 57999999988
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++|+ +++..+++++.++|||||.+++..
T Consensus 104 l~~~-~d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 104 LLHM-TTPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp GGGC-SSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhcC-CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 5554 589999999999999999999875
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.48 E-value=8.5e-14 Score=124.71 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=76.8
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
++.+|||||||+|.++..+++. .|+|+|+++.++ +.++++.. ...+...+.+.+++ +++||+|+|..+++|
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i-----~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAI-----SHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEH 93 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHH-----HHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHh-----hhhhccccccccccccccccccc-ccccccccccceeEe
Confidence 4568999999999999999876 899999887655 44444432 23456667777775 479999999988666
Q ss_pred cccChHHHHHHHH-HhcCCCeEEEEEeC
Q 015704 87 WTRDDGILLLEVN-RMLRAGGYFAWAAQ 113 (402)
Q Consensus 87 ~~~d~~~~l~e~~-r~LkpgG~li~~~~ 113 (402)
. +|+..++.++. ++|+|||.++++++
T Consensus 94 ~-~d~~~~l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 94 I-DDPVALLKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp C-SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred c-CCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 5 58999999998 79999999999964
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.45 E-value=1.8e-14 Score=126.53 Aligned_cols=95 Identities=18% Similarity=0.300 Sum_probs=71.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCcccccccCCCCCC--CCCCcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGLIGVMHDWCEPFD--TYPRTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~~~~~~~~~~~~~--~~~~sfD~v~~~~~~~ 329 (402)
+|||+|||+|..+..|+++|+ .|+++| ++.+++.+. +.|+ ..+...+.++. .++++||+|+|..+|+
T Consensus 33 rvLDiGcG~G~~~~~la~~g~-----~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY-----DVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVVMM 106 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred cEEEECCCCCHHHHHHHHHhh-----hhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeeeee
Confidence 599999999999999999997 566666 556666543 3344 11211112222 2458999999999999
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|+++ .+...+|.++.|+|||||++++..
T Consensus 107 ~~~~-~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 107 FLEA-QTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp GSCT-THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCH-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9974 456799999999999999999974
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.45 E-value=1.6e-14 Score=125.78 Aligned_cols=109 Identities=9% Similarity=-0.015 Sum_probs=81.5
Q ss_pred HHHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc------------------c
Q 015704 242 ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL------------------I 302 (402)
Q Consensus 242 ~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~------------------~ 302 (402)
..|...+..+.+. +|||+|||+|..+.+|+++|+ +|+++| +++|++.+.++.- +
T Consensus 10 ~~~~~~l~~~~~~--rvLd~GCG~G~~a~~la~~G~-----~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T d1pjza_ 10 QQYWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGY-----HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 82 (201)
T ss_dssp HHHHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCC-----EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred HHHHHHcCCCCCC--EEEEecCcCCHHHHHHHHcCC-----ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence 3455556655443 599999999999999999998 677777 6788888877521 1
Q ss_pred cccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 303 GVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 303 ~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
..+......+++++ .+||+|+++.++.|+.+ .+...++.+|.|+|||||.+++..
T Consensus 83 ~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 83 EIWCGDFFALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EEEEECCSSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ceecccccccccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEEE
Confidence 12222223334445 69999999999999874 345799999999999999988864
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=3.3e-14 Score=131.65 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=78.8
Q ss_pred HHHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHh----cCcccccccCCCCCCCC
Q 015704 242 ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYD----RGLIGVMHDWCEPFDTY 315 (402)
Q Consensus 242 ~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~~~~~~~~~~~~~ 315 (402)
+...+.+.+.+|. +|||||||.|+++.+++++ |+ +|++++ ++++++.+.+ .|+...+.....+...+
T Consensus 42 ~~~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~-----~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~ 114 (280)
T d2fk8a1 42 DLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDV-----NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF 114 (280)
T ss_dssp HHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred HHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhCce-----eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh
Confidence 3444555555543 4999999999999999877 65 555555 4556655444 46633332222333456
Q ss_pred CCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 316 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 316 ~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|++||.|++..+|+|+.++ +...+++++.|+|||||.++|.+
T Consensus 115 ~~~fD~i~si~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CCCCSEEEEESCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccchhhhhHhhHHHHhhhh-hHHHHHHHHHhccCCCceEEEEE
Confidence 7899999999999999854 56899999999999999999864
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.44 E-value=8.5e-14 Score=129.04 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=75.2
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEcc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAG 326 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~~ 326 (402)
.+-.+|||+|||+|.++..|++... ....|+++| ++.+++.|.++ ++ +...+...+.+ +++++||+|+|.+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~--~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~~~~ 102 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLP--EGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICHA 102 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSC--TTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEES
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCC--CCCEEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEEEeh
Confidence 3456799999999999999987521 112566667 56777766554 33 33333333443 3568999999999
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|+|+++ +..+|.++.|+|||||++++.++
T Consensus 103 ~l~~~~d---~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 103 FLLHMTT---PETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CGGGCSS---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhhcCCC---HHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999875 68999999999999999999875
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=8.7e-14 Score=129.28 Aligned_cols=111 Identities=12% Similarity=0.178 Sum_probs=78.5
Q ss_pred HHHHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChh----hHHhcCcccccccCCCCCCC
Q 015704 241 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLP----VIYDRGLIGVMHDWCEPFDT 314 (402)
Q Consensus 241 ~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~----~~~~rg~~~~~~~~~~~~~~ 314 (402)
++...+.+.+.+|. +|||+|||.|+++.+++++ |+ +|++++ +++++. .+.+.|+...++-...+..+
T Consensus 50 ~~~~~~~l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~-----~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~ 122 (291)
T d1kpia_ 50 RKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDV-----NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE 122 (291)
T ss_dssp HHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred HHHHHHhcCCCCCC--EEEEecCcchHHHHHHHHhcCc-----ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc
Confidence 34555666666654 4999999999999999865 65 444544 344443 44455774333322233343
Q ss_pred CCCcccEEEEcccccccccc------CCHHHHHHHhhhhccCCcEEEEEe
Q 015704 315 YPRTYDLLHAAGLFSVESKR------CNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 315 ~~~sfD~v~~~~~~~~~~~~------~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.+.+||.|+|-.+|+|+.+. .+...+++++.|+|||||.+++.+
T Consensus 123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 44899999999999998763 245799999999999999999863
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.40 E-value=1e-13 Score=126.62 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=78.6
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+..+|||+|||+|.++..|+.. .|+++|+++.++..+..... +.+ ..+.+.+++.+++++++||+|+|..+++
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~ 169 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA---GMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT---TSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc---ccccceeEEccccccccCCCccceEEeecccc
Confidence 5679999999999999887754 68899999877654432211 222 3466778889999899999999999988
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.++ ...+|++++++|+|||++++..
T Consensus 170 hl~d~d~~~~l~~~~~~LkpgG~iii~e 197 (254)
T d1xtpa_ 170 YLTDADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence 77632 3688999999999999999985
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=4.3e-13 Score=120.36 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=87.9
Q ss_pred HhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-----------------------
Q 015704 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL----------------------- 301 (402)
Q Consensus 246 ~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~----------------------- 301 (402)
+.+..+.+ .+|||+|||.|..+.+|+++|+ +|+++| ++.+++.+.++.-
T Consensus 39 ~~l~~~~~--~rvLd~GCG~G~~a~~LA~~G~-----~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (229)
T d2bzga1 39 TFLKGKSG--LRVFFPLCGKAVEMKWFADRGH-----SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN 111 (229)
T ss_dssp HHHTTCCS--CEEEETTCTTCTHHHHHHHTTC-----EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HhcCCCCC--CEEEEeCCCCcHHHHHHHhCCC-----cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence 34444433 3599999999999999999998 677777 6677766655421
Q ss_pred ccccccCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------hhHHHHHH
Q 015704 302 IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQE 368 (402)
Q Consensus 302 ~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~~ 368 (402)
+..+..-...+++.+ .+||+|+...+|.|+.. .+.+.++.+|.|+|||||++++.... -..+.+++
T Consensus 112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~ 190 (229)
T d2bzga1 112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIER 190 (229)
T ss_dssp EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHH
T ss_pred EEEEEcchhhccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHH
Confidence 111211111223344 79999999999999974 46789999999999999998877321 13556777
Q ss_pred HHHhcCceEEEe
Q 015704 369 IGKAMGWHVTLR 380 (402)
Q Consensus 369 ~~~~~~w~~~~~ 380 (402)
++.. .|++..-
T Consensus 191 lf~~-~~~i~~l 201 (229)
T d2bzga1 191 LFGK-ICNIRCL 201 (229)
T ss_dssp HHTT-TEEEEEE
T ss_pred HhcC-CCEEEEE
Confidence 7765 4776543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=1.6e-13 Score=127.07 Aligned_cols=109 Identities=16% Similarity=0.246 Sum_probs=77.5
Q ss_pred HHHHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChh----hHHhcCcccccccCCCCCCC
Q 015704 241 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLP----VIYDRGLIGVMHDWCEPFDT 314 (402)
Q Consensus 241 ~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~----~~~~rg~~~~~~~~~~~~~~ 314 (402)
++...+.+.+.+|. .|||||||.|+++.++++. |+ .|++++ ++.+++ .+.+.|+...+.-...++..
T Consensus 51 ~~~~~~~l~l~~G~--~VLDiGCG~G~~a~~~a~~~g~-----~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (285)
T d1kpga_ 51 IDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDV-----NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ 123 (285)
T ss_dssp HHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCC-----EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred HHHHHHHcCCCCCC--EEEEecCcchHHHHHHHhcCCc-----ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc
Confidence 34556666666663 4999999999999998776 55 444443 334444 34455663333322233344
Q ss_pred CCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 315 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 315 ~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+|.+||.|.|-..|+|+.++ +...+++++.|+|||||.+++.
T Consensus 124 ~~~~fD~i~si~~~eh~~~~-~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 124 FDEPVDRIVSIGAFEHFGHE-RYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp CCCCCSEEEEESCGGGTCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred ccccccceeeehhhhhcCch-hHHHHHHHHHhhcCCCCcEEEE
Confidence 57899999999999998753 5679999999999999999985
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=1.6e-13 Score=124.89 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=81.3
Q ss_pred ccccCCCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEec
Q 015704 4 INTWIRLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 4 i~~~~~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
+.....++.+|||+|||+|.++..+++. +|+++|+++.++..++ +.++.++....+...+... +++.++||+|+++
T Consensus 114 l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~an 191 (254)
T d2nxca1 114 LARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVAN 191 (254)
T ss_dssp HHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEE
T ss_pred HHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCceeEEeccccc-cccccccchhhhc
Confidence 3445567899999999999988877765 7999999999997776 5666777777777766543 3556899999987
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.. .+ ....++.++.++|||||+++++..
T Consensus 192 i~-~~---~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 192 LY-AE---LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp CC-HH---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cc---cHHHHHHHHHHhcCCCcEEEEEec
Confidence 43 22 346788999999999999999853
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.39 E-value=6.6e-13 Score=121.00 Aligned_cols=141 Identities=22% Similarity=0.299 Sum_probs=94.2
Q ss_pred CCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHH----hcCc---ccccccCCCCCCCCCCcccEEE
Q 015704 251 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIY----DRGL---IGVMHDWCEPFDTYPRTYDLLH 323 (402)
Q Consensus 251 ~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~----~rg~---~~~~~~~~~~~~~~~~sfD~v~ 323 (402)
..+..++|||+|||+|.++..|+++..++.++. .|.+.++..+. +.|+ +..++. ..+.+.|.+||+|+
T Consensus 77 d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~---~D~~~~~~~a~~~~~~~~~~~rv~~~~~--D~~~~~~~~~D~v~ 151 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATV---LEMAGTVDTARSYLKDEGLSDRVDVVEG--DFFEPLPRKADAII 151 (253)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECTTHHHHHHHHHHHTTCTTTEEEEEC--CTTSCCSSCEEEEE
T ss_pred CCccCCEEEEeCCCCCHHHHHHHHhcceeEEEE---ccCHHHHHHHHHHHHHhhcccchhhccc--cchhhcccchhhee
Confidence 457788999999999999999999865444333 33334554443 3455 333322 11234567899999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--------------h------------hHHHHHHHHHhcCceE
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--------------D------------VMDELQEIGKAMGWHV 377 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--------------~------------~~~~~~~~~~~~~w~~ 377 (402)
++++|+|+.+. +...+|+++.|+|||||.++|.|.. + ..+.+++++++-.+++
T Consensus 152 ~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~ 230 (253)
T d1tw3a2 152 LSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 230 (253)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred eccccccCCch-hhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeE
Confidence 99999998753 4568899999999999999998631 0 1355667788888887
Q ss_pred EEeecCCCCCCc-eEEEEEEe
Q 015704 378 TLRETAEGPHAS-YRILTADK 397 (402)
Q Consensus 378 ~~~~~~~~~~~~-~~~l~~~k 397 (402)
.....-..+..+ ..-|++.|
T Consensus 231 ~~v~~~~~p~~~~~~~li~~~ 251 (253)
T d1tw3a2 231 EEVRQLPSPTIPYDLSLLVLA 251 (253)
T ss_dssp EEEEEEECSSSSCEEEEEEEE
T ss_pred EEEEECCCCCCCccEEEEEEe
Confidence 654443344444 33444444
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=4.5e-13 Score=121.81 Aligned_cols=151 Identities=9% Similarity=0.070 Sum_probs=98.9
Q ss_pred HHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c-cc--------------
Q 015704 244 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L-IG-------------- 303 (402)
Q Consensus 244 y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~-~~-------------- 303 (402)
+.+.+......-..|||+|||+|.++..+++.+. .+|+++| ++++++.+.++- . +.
T Consensus 41 ~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~----~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (257)
T d2a14a1 41 LHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF----QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 116 (257)
T ss_dssp HHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE----EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTC
T ss_pred HHHHhcccCCCCCEEEEECCCCCHhHHHHhcccc----CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccc
Confidence 3333333333345699999999999888887753 3677777 677777665441 0 00
Q ss_pred ------------------ccc--cCCCCCCCCC-CcccEEEEccccccccc-cCCHHHHHHHhhhhccCCcEEEEEeCh-
Q 015704 304 ------------------VMH--DWCEPFDTYP-RTYDLLHAAGLFSVESK-RCNMSTIMLEMDRMLRPGGHVYIRDSI- 360 (402)
Q Consensus 304 ------------------~~~--~~~~~~~~~~-~sfD~v~~~~~~~~~~~-~~~~~~~l~e~~RvLrpgG~~~~~~~~- 360 (402)
... .......+++ .+||+|.|..+++|+.. ..++..++.+|.|+|||||++++++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 117 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp GGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred cchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 000 0111223466 79999999999999853 235678999999999999999998632
Q ss_pred ---------------hhHHHHHHHHHhcCceEEEeecC---CC----CCCceEEEEEEec
Q 015704 361 ---------------DVMDELQEIGKAMGWHVTLRETA---EG----PHASYRILTADKR 398 (402)
Q Consensus 361 ---------------~~~~~~~~~~~~~~w~~~~~~~~---~~----~~~~~~~l~~~k~ 398 (402)
-..+.+++.+++-.+++...+.. +. ...+.-+++++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 197 LPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred cccceeccccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence 13678888899988876543211 11 2233456667774
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.37 E-value=1.5e-13 Score=125.17 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=74.9
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcC----c---ccccccCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRG----L---IGVMHDWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg----~---~~~~~~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|+.+..+++.|. .+|+++| ++.|++.|.+|. . +..+..-+...+..+ .+||+|.|..
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~----~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGI----GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC----SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CEEEEecccCcHHHHHHHHcCC----CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 3599999999999999998764 1577777 678888887662 1 222222222223223 6999999999
Q ss_pred cccccc-ccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 327 LFSVES-KRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 327 ~~~~~~-~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
+++|.. +..++..+|.++.|+|||||+|+++.++
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 999974 3345678999999999999999998665
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.36 E-value=2.1e-13 Score=118.49 Aligned_cols=103 Identities=10% Similarity=-0.048 Sum_probs=76.1
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc-------------CCCcEEEeccccCCC-CCC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER-------------GAPAMVAAFATRRLP-YPS 72 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~-------------~~~~~~~~~d~~~lp-~~~ 72 (402)
.++.+|||+|||+|..+..|+++ .|+|+|+|+.++..+. +.+++. +....+...+...++ .+.
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 97 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYF-TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 97 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHH-HHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHH-HHhccccchhhhhhhhhccccccceecccccccccccc
Confidence 46779999999999999999976 7899999987775554 222211 122234555655555 335
Q ss_pred CCeeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 73 QAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 73 ~sfDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+||+|+++.++++...+ ....+++++++|||||.+++..
T Consensus 98 ~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 689999998887766543 4789999999999999988874
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=8.4e-13 Score=122.50 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=79.0
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+++.+|||||||.|.++.+++++ .++|+++|...+..+. +.+++.++...+.. ...+.++.+++||.|+|..++.
T Consensus 60 ~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~~~v~~-~~~d~~~~~~~fD~i~sie~~e 137 (291)
T d1kpia_ 60 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPRRKEV-RIQGWEEFDEPVDRIVSLGAFE 137 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCSSCEEE-EECCGGGCCCCCSEEEEESCGG
T ss_pred CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccchhhhh-hhhcccccccccceEeechhHH
Confidence 47789999999999999888865 7889999987665554 44555566543322 1233456678999999999988
Q ss_pred cccc--------ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 86 NWTR--------DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 86 ~~~~--------d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+.+ +...+++++.++|||||.+++.+.
T Consensus 138 H~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 138 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp GTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred hcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 9864 247899999999999999999864
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.7e-13 Score=126.19 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=71.8
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
.+-.+|||+|||+|.++..|++.+.++ .++++| ++.+++.+.++.- +..+....+.+ +|+ ++||+|++..++.
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 158 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL-PFSDTSMDAIIRIYAPC 158 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSC-SBCTTCEEEEEEESCCC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeehhhc-cCCCCCEEEEeecCCHH
Confidence 344569999999999999999986433 455556 5788888887754 44444444554 466 8999999987766
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
| +.|+.|+|||||++++..+.
T Consensus 159 ~----------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 159 K----------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp C----------HHHHHHHEEEEEEEEEEEEC
T ss_pred H----------HHHHHHHhCCCcEEEEEeeC
Confidence 5 57999999999999999765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=1.3e-12 Score=120.66 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=76.6
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcE--EEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAM--VAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+++.+|||||||+|.++.++++. .|+++++++..+..+. +.+++.++... +...|...+ +++||.|+|..+
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~ 126 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEA 126 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESC
T ss_pred CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhhhhhhh---ccchhhhhHhhH
Confidence 46789999999999999887754 7899999987765554 44555555433 333343333 478999999999
Q ss_pred cccccc-ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTR-DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~-d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.|+.. +...+|++++++|||||.+++.+
T Consensus 127 ~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 127 FEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 888864 34889999999999999999975
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.32 E-value=2.1e-12 Score=112.86 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=76.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++.. .++++|+++.++..+. +.+...+.. ..+...|... ++++++||+|+|+.+
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~-~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p 128 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAK-ENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPP 128 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCC
T ss_pred CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHH-HHHHHhCCccceEEEEEcchhh-hhccCCceEEEEccc
Confidence 35789999999999999988876 7899999988776665 333344443 3455556544 567789999999877
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++..+....+++++.++|+|||.+++..
T Consensus 129 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 129 IRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp STTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 54433224788999999999999998874
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.5e-12 Score=120.20 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=71.8
Q ss_pred CCeEEEECCccchhHHHHccC----------CceEEeCCccchHHHHHHHHHHcCCCcE---EEecccc------CCCCC
Q 015704 11 LRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALERGAPAM---VAAFATR------RLPYP 71 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~~~----------~v~~vdi~~~~~~~a~~~~a~~~~~~~~---~~~~d~~------~lp~~ 71 (402)
..+|||||||+|.++..++.. .++++|++..++..+............. +...+.+ ..+++
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 348999999999887766532 4678888887775555333322233322 2222222 23567
Q ss_pred CCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 72 ~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++||+|+|..+++| .+|+..++++++++|+|||.+++..+
T Consensus 121 ~~~fD~I~~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceeEEEEccceec-CCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 899999999988555 55899999999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=3.1e-13 Score=125.77 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=72.3
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cccc-----ccc--cCCC--CCCCCCCccc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIG-----VMH--DWCE--PFDTYPRTYD 320 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~-----~~~--~~~~--~~~~~~~sfD 320 (402)
.++|||+|||+|.++..|+++|+ +|+++| +++|++.|.++ +... .+. ++.. .-.+++++||
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~-----~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGF-----SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred CCEEEEecCCCcHHHHHHHHcCC-----eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 35799999999999999999997 678887 67888877654 2210 010 1100 0012337999
Q ss_pred EEEEc-ccccccccc----CCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 321 LLHAA-GLFSVESKR----CNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 321 ~v~~~-~~~~~~~~~----~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
+|+|. ++|.|+.+. .+...+|+|+.|+|||||+||++..
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 99985 589998753 2356899999999999999999754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.8e-13 Score=120.13 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=72.1
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccc--cCCCCCCCCeeEEEe--
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT--RRLPYPSQAFDLIHC-- 80 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~--~~lp~~~~sfDlI~s-- 80 (402)
..++.+|||||||+|..+..+++. .++++|+++.++..+. +.+.+..........+. ...++++++||.|+.
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHH-HHhhhcccccccccccccccccccccccccceeecc
Confidence 346779999999999999988875 6899999987775554 33333333333444332 233567889999984
Q ss_pred ---cCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 81 ---SRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 81 ---~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.....|+ .++..++++++|+|||||.|++.
T Consensus 130 ~~~~~~~~~~-~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 130 YPLSEETWHT-HQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCCBGGGTTT-HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccc-cCHHHHHHHHHHHcCCCcEEEEE
Confidence 2332333 36788999999999999999875
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.4e-12 Score=115.38 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=77.3
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHH-----------------cCCCcEEEeccccCCC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALE-----------------RGAPAMVAAFATRRLP 69 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~-----------------~~~~~~~~~~d~~~lp 69 (402)
.++.+|||+|||+|..+..|++. .|+|+|+|+.++..+..+.... .+....+.+.|...++
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 123 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP 123 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence 35679999999999999999987 7899999987764443221110 0112335556655553
Q ss_pred -CCCCCeeEEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 70 -YPSQAFDLIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 70 -~~~~sfDlI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+.||+|+...+++++.++ ...+++++.++|||||.+++.+
T Consensus 124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 567899999998887877655 4789999999999999988875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.30 E-value=2.2e-12 Score=113.48 Aligned_cols=103 Identities=12% Similarity=0.178 Sum_probs=80.3
Q ss_pred CCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCC--CCCCCeeEEEe
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLP--YPSQAFDLIHC 80 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp--~~~~sfDlI~s 80 (402)
+.....|||||||+|.++..+++. .++|+|++...+..+. +.+.+.++.++ +..+|+..+. ++++++|.|++
T Consensus 27 ~~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~-~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i 105 (204)
T d2fcaa1 27 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL 105 (204)
T ss_dssp TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CCCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHH-HHHHHHhccCchhcccchhhhhcccCchhhhcccc
Confidence 444568999999999998888764 7899999998886665 55556676654 6667776665 78899999997
Q ss_pred cCcccccccCh--------HHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~ 112 (402)
... .+|.... ..++++++|+|||||.|.+.|
T Consensus 106 ~fp-~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 106 NFS-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp ESC-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccc-cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 655 5555332 479999999999999999986
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.28 E-value=1.8e-12 Score=117.80 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=82.1
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc-ccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL-IGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~-~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
+|||+|||+|.++.++++.|+ .|+++| ++.+++.|.+ .|+ +..++...+ ..+| .+||+|+|+.+..
T Consensus 123 ~VLDiGcGsG~l~i~aa~~g~-----~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~--~~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 123 KVLDLGTGSGVLAIAAEKLGG-----KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE--AALPFGPFDLLVANLYAE 195 (254)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-----EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH--HHGGGCCEEEEEEECCHH
T ss_pred EEEEcccchhHHHHHHHhcCC-----EEEEEECChHHHHHHHHHHHHcCCceeEEecccc--ccccccccchhhhccccc
Confidence 599999999999999999987 455555 4566665554 354 222222111 2255 7999999974433
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEEeC-hhhHHHHHHHHHhcCceEEEeecC
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETA 383 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~ 383 (402)
+ +..++.++.|+|||||++++++- .+..+.+.+.+++..|++.....+
T Consensus 196 ~------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~ 244 (254)
T d2nxca1 196 L------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp H------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred c------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEE
Confidence 3 35788999999999999999863 334677888888889998776654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.27 E-value=3.8e-12 Score=111.12 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=87.9
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCCCCCCCCC-CcccEEEE
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~~~~~~~~-~sfD~v~~ 324 (402)
-.+|||+|||+|.++..|++.+. +|+.+| ++.++..+.++ ++ +..++.-+ +..++ ++||+|+|
T Consensus 53 ~~~VLDiGcG~G~~~~~la~~~~-----~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~--~~~~~~~~fD~Ii~ 125 (194)
T d1dusa_ 53 DDDILDLGCGYGVIGIALADEVK-----STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--YENVKDRKYNKIIT 125 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGGSS-----EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--TTTCTTSCEEEEEE
T ss_pred CCeEEEEeecCChhHHHHHhhcc-----ccceeeeccccchhHHHHHHHhCCccceEEEEEcch--hhhhccCCceEEEE
Confidence 45699999999999999999887 555555 45666655442 33 33333221 22344 79999999
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeC-hhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEe
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-IDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADK 397 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k 397 (402)
...+++..+ ....++.++.|+|||||.+++... ....+.+...+++.-+++...... ...+||-++|
T Consensus 126 ~~p~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K 193 (194)
T d1dusa_ 126 NPPIRAGKE--VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp CCCSTTCHH--HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred cccEEecch--hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence 988876543 246889999999999999877543 333455556666665555543332 3578888887
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.27 E-value=4e-12 Score=110.22 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=79.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.++.+|||+|||+|.++..++.. +|+++|+++.++..+. +.+++.++. ..+..+|+.+.+++..+||.|++....
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~-~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~ 110 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTE-MNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG 110 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHH-HHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc
Confidence 46789999999999999988876 7999999998887666 445556653 346677777777777899999987543
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. +...+++++.+.|||||++++..
T Consensus 111 ~----~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 111 G----ELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp T----CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c----cchHHHHHHHHHhCcCCEEEEEe
Confidence 2 45788999999999999999885
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.3e-12 Score=119.84 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=86.8
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----C-cc--------------
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----G-LI-------------- 302 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g-~~-------------- 302 (402)
.+.+.++....+=.+|||+|||+|.+...++.+.. .+|+++| +++|++.+..+ + .+
T Consensus 43 ~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~----~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 118 (263)
T d2g72a1 43 CLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF----EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 118 (263)
T ss_dssp HHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC----SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC----CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcc
Confidence 33334433332334699999999988766665532 3788888 77888776532 0 00
Q ss_pred -----------------ccc-ccCC--CCCC--CCC-CcccEEEEcccccccc-ccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 303 -----------------GVM-HDWC--EPFD--TYP-RTYDLLHAAGLFSVES-KRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 303 -----------------~~~-~~~~--~~~~--~~~-~sfD~v~~~~~~~~~~-~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
..+ .+.. ..+. .++ .+||+|.|..+++|+. ++.++..+|.++.|+|||||++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~ 198 (263)
T d2g72a1 119 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 198 (263)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 000 0111 1111 123 5899999999999985 44567899999999999999999985
Q ss_pred Ch----------------hhHHHHHHHHHhcCceEE
Q 015704 359 SI----------------DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 359 ~~----------------~~~~~~~~~~~~~~w~~~ 378 (402)
.. -..+.+++++.+-..++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 199 ALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp EESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred ccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEE
Confidence 21 136778888888777654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=2.3e-12 Score=119.75 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=71.4
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC-----cEEEecccc----CCCCCCCCeeEE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP-----AMVAAFATR----RLPYPSQAFDLI 78 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~-----~~~~~~d~~----~lp~~~~sfDlI 78 (402)
++.+|||+|||+|.++..|+++ .|+|+|+|+.++..+..... ..+.. ......+.. .+| ..++||+|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~v 133 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW-NRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAV 133 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHH-hcccccccceeeeeeccccccccccC-CCCCceEE
Confidence 3569999999999999999887 79999999988876653332 33222 122222221 122 24689999
Q ss_pred EecC-ccccccc------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSR-CRINWTR------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~-~~~~~~~------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|.. ++.|+.. +...+|++++++|||||.|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 9864 4455432 24679999999999999999985
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.25 E-value=2.1e-12 Score=117.78 Aligned_cols=126 Identities=25% Similarity=0.308 Sum_probs=86.6
Q ss_pred CCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhh----HHhcCc---ccccccCCCCCCCCCCcccEEE
Q 015704 251 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPV----IYDRGL---IGVMHDWCEPFDTYPRTYDLLH 323 (402)
Q Consensus 251 ~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~----~~~rg~---~~~~~~~~~~~~~~~~sfD~v~ 323 (402)
..+..++|||+|||.|.++..|+++..+. .++..|.+.+++. +.+.|+ +..... ..+.+.|.+||+|+
T Consensus 78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~~---~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~--d~~~~~p~~~D~v~ 152 (256)
T d1qzza2 78 DWSAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEG--DFFKPLPVTADVVL 152 (256)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEEC--CTTSCCSCCEEEEE
T ss_pred CCccCCEEEEECCCCCHHHHHHHHhhcCc---EEEEecChHHHHHHHHHHhhcCCcceeeeeee--eccccccccchhhh
Confidence 45678899999999999999999985433 3333343334433 334455 222222 22345667899999
Q ss_pred EccccccccccCCHHHHHHHhhhhccCCcEEEEEeChh---------------------------hHHHHHHHHHhcCce
Q 015704 324 AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSID---------------------------VMDELQEIGKAMGWH 376 (402)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~---------------------------~~~~~~~~~~~~~w~ 376 (402)
+.++|+|+.+. +...+|+++.|+|||||.++|.|... ..+.+++++++-.++
T Consensus 153 ~~~vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~ 231 (256)
T d1qzza2 153 LSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 231 (256)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred ccccccccCcH-HHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCc
Confidence 99999998753 44688999999999999999987420 134566777777787
Q ss_pred EEEeec
Q 015704 377 VTLRET 382 (402)
Q Consensus 377 ~~~~~~ 382 (402)
......
T Consensus 232 ~~~~~~ 237 (256)
T d1qzza2 232 LASERT 237 (256)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 665543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.25 E-value=4.5e-12 Score=113.56 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=70.5
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccc-cCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT-RRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~-~~lp~~~~sfDlI~s~~~ 83 (402)
+++.+|||+|||+|..+..+++. .|+|+|+++.++..+. +.+..+.. ......+. ...++.+..+|++++...
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~~~n-i~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAEREN-IIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTCTT-EEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhhhcc-cceEEEeeccCcccccccceeEEeecc
Confidence 56789999999999988888764 6999999998876554 33333332 22333332 223345566666554433
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++.+++..++.++.+.|||||.++++.
T Consensus 151 -~~~~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 151 -VAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp -CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccchHHHHHHHHHHHHhcccCceEEEEe
Confidence 4445578899999999999999999974
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=6.1e-12 Score=116.01 Aligned_cols=98 Identities=10% Similarity=0.181 Sum_probs=69.7
Q ss_pred eEEeccccchHHHHHHhhc----CCCceEEEeccCC-CCCChhhHHhc--Cc--ccc----ccc-CCC-----CCCCCC-
Q 015704 257 NVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVS-GFNTLPVIYDR--GL--IGV----MHD-WCE-----PFDTYP- 316 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~----~~~~~~~~v~~~~-~~~~~~~~~~r--g~--~~~----~~~-~~~-----~~~~~~- 316 (402)
+|||+|||+|.++..|++. ..+ ....++++| +..|++.+.++ +. +.. .+. ..+ ...+++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~-~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPG-VCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTT-CEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccC-CceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 5999999999998877543 211 345677777 56788777665 11 111 111 000 013455
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++||+|+|.++|+|.++ +..+|.++.|+|||||++++..
T Consensus 122 ~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~ 160 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIV 160 (280)
T ss_dssp CCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEE
Confidence 89999999999999874 6899999999999999999884
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.24 E-value=1.5e-11 Score=108.04 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=79.7
Q ss_pred CCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC--CCCCCeeEEEe
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP--YPSQAFDLIHC 80 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp--~~~~sfDlI~s 80 (402)
+.....|||||||+|.++..+++. .++|+|++...+..+. +.+.+.++.+ .+...|+..+. +++.++|.|++
T Consensus 29 ~~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~-~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i 107 (204)
T d1yzha1 29 GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL-DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL 107 (204)
T ss_dssp TSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHH-HhhhhhccccceeeecCHHHHhhhccCCceehhcc
Confidence 445568999999999988888764 7899999988776665 5555566654 46667766665 67899999997
Q ss_pred cCcccccccCh--------HHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDD--------GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~--------~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.. .+|+... ..+++.+.++|||||.|+++|
T Consensus 108 ~fP-dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 108 NFS-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp ESC-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccc-ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 654 5565432 589999999999999999987
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.6e-12 Score=118.07 Aligned_cols=104 Identities=11% Similarity=0.047 Sum_probs=74.3
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc---------------------------
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--------------------------- 58 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~--------------------------- 58 (402)
.++.+|||+|||+|.++..++.. .|+|+|+++.++..++... .+.....
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWL-KKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHH-HTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHH-hhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 45679999999999887666644 6899999998887665332 2221110
Q ss_pred ----EEEe----ccccCCCCCCCCeeEEEecCccccccc---ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 59 ----MVAA----FATRRLPYPSQAFDLIHCSRCRINWTR---DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 59 ----~~~~----~d~~~lp~~~~sfDlI~s~~~~~~~~~---d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... .+....+++.++||+|++..+++|... +...+++++.++|||||++++++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~ 194 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 194 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence 0011 112234677889999999988787764 346899999999999999999864
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=1.2e-11 Score=114.18 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=76.6
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+++.+|||||||.|.++.++++. .|+|+++|+.....+. +.+.+.+... .+...|...+| ++||.|+|..+
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~-~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~ 136 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQ-QLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA 136 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESC
T ss_pred CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHH-HHHHhhhhhhhhHHHHhhhhccc---ccccceeeehh
Confidence 47789999999999999888765 7889999887665554 3333444432 34455655543 68999999999
Q ss_pred cccccc-ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTR-DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~-d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.|+.. +...+++++.++|||||.+++.+
T Consensus 137 ~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 137 FEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp GGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 899863 35789999999999999999875
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=9.1e-13 Score=118.25 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=67.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-----cccc-ccCCCCCCCCC-CcccEEE----
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-----IGVM-HDWCEPFDTYP-RTYDLLH---- 323 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-----~~~~-~~~~~~~~~~~-~sfD~v~---- 323 (402)
.+|||||||+|.++.++++.+ ..+|+.+| ++.+++.+.++.- +..+ .+......++| .+||.|.
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~----~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAP----IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSC----EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CeEEEeeccchHHHHHHHHcC----CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 359999999999999999874 23677777 5678887776632 1111 12222223456 6888877
Q ss_pred -EccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 324 -AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 324 -~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+...++|+. +++.+++|+.|+|||||.|++.+
T Consensus 131 ~~~~~~~~~~---~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 131 PLSEETWHTH---QFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCBGGGTTTH---HHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccc---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 455556655 45899999999999999999853
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.21 E-value=1.3e-11 Score=112.23 Aligned_cols=100 Identities=21% Similarity=0.300 Sum_probs=71.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
+..+|||||||+|.++..++++ .++++|+ +.++..+. +...+.+.. ..+...|..+ +. +.+||+|+++.+
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~rv~~~~~D~~~-~~-~~~~D~v~~~~v 155 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTAR-SYLKDEGLSDRVDVVEGDFFE-PL-PRKADAIILSFV 155 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHH-HHHHHTTCTTTEEEEECCTTS-CC-SSCEEEEEEESC
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHH-HHHHHhhcccchhhccccchh-hc-ccchhheeeccc
Confidence 4579999999999999888864 5677787 44555444 333444443 3355556433 22 357999999999
Q ss_pred ccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++||.++ ...+|++++++|||||.+++...
T Consensus 156 lh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 156 LLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 8888633 25789999999999999999753
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.18 E-value=1.2e-11 Score=109.18 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=70.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCC---CCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPS---QAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~---~sfDlI~s~ 81 (402)
+++.+|||+|||+|..+..+++. .|+|+|+++.++..+. +.++.++ .......+....+.+. ..+|+|++.
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhccC-CceEEEeeccCccccccccceEEEEEec
Confidence 56789999999999888877753 6999999999887665 4454443 3344455555544333 346666543
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+.| ..+...+++++.++|||||.+++..
T Consensus 133 --~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 133 --IAQ-KNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp --CCS-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --ccC-hhhHHHHHHHHHHHhccCCeEEEEE
Confidence 223 3367889999999999999999874
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.17 E-value=4.2e-11 Score=109.03 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=71.1
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
...+|||||||+|.++..++++ .++++|+ +..+..+. +...+.+... .+...|... +.+ .+||+|++..+
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~v 156 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERAR-RRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFV 156 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHH-HHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESC
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHH-HHHhhcCCcceeeeeeeeccc-ccc-ccchhhhcccc
Confidence 4579999999999999988875 6778887 44444443 3333444432 344444332 344 46999999999
Q ss_pred ccccccC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++|.++ ...+|++++++|||||.+++...
T Consensus 157 Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 157 LLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 8888743 25789999999999999998854
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.16 E-value=2.8e-11 Score=106.29 Aligned_cols=115 Identities=12% Similarity=0.166 Sum_probs=76.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh----hhHHhcCc--ccccccCCCCCC-CCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL----PVIYDRGL--IGVMHDWCEPFD-TYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~----~~~~~rg~--~~~~~~~~~~~~-~~~-~sfD~v~~~~~ 327 (402)
.|||+|||+|.++..||++..+. +++++| +..++ +.+.+.|+ +..++.-...+. .|| .++|.|++...
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~---~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred eEEEEEecCcHHHHHHHHhCCCC---cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 49999999999999999986443 566666 34444 34555566 444443333332 266 89999998877
Q ss_pred cccccccC-----CHHHHHHHhhhhccCCcEEEEE-eChhhHHHHHHHHHhcC
Q 015704 328 FSVESKRC-----NMSTIMLEMDRMLRPGGHVYIR-DSIDVMDELQEIGKAMG 374 (402)
Q Consensus 328 ~~~~~~~~-----~~~~~l~e~~RvLrpgG~~~~~-~~~~~~~~~~~~~~~~~ 374 (402)
..+.+.+. --...|.++.|+|||||.+.|+ |...-.+-+.+.+....
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 66543221 0148999999999999999885 55544555555554433
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.16 E-value=4e-11 Score=109.11 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=76.8
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHc--CC-CcEEEeccccCCCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER--GA-PAMVAAFATRRLPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~--~~-~~~~~~~d~~~lp~~~~sfDlI~s 80 (402)
+++.+|||+|||+|.++..|+.. .++++|+++.++..+..+..... .. ...+...|....++++++||.|++
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l 174 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL 174 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE
Confidence 47889999999999999888754 68999999887766654333221 12 334667788888889999999985
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. . ++|..++.++.++|||||.+++..
T Consensus 175 d-----l-p~P~~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 175 D-----M-LAPWEVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp E-----S-SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred e-----c-CCHHHHHHHHHhccCCCCEEEEEe
Confidence 3 3 378899999999999999999885
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.16 E-value=5.6e-11 Score=107.35 Aligned_cols=98 Identities=10% Similarity=0.149 Sum_probs=73.0
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+++.+|||+|||+|.++..+++. .|+++|.++..+..+..+..+..+..+ .+...|..+. +++++||.|++..
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld~ 162 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIADI 162 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEECC
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeecC
Confidence 47789999999999998888753 689999998777666543333223333 3555666554 4678999999642
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+++..++.++.++|||||.+++..+
T Consensus 163 ------p~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 163 ------PDPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp ------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ------CchHHHHHHHHHhcCCCceEEEEeC
Confidence 3677899999999999999998853
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=2.5e-11 Score=107.45 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=71.2
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~ 82 (402)
+++.+|||+|||+|.++..+++. .|+++|+++..+..+.... +..+..+ .+...|....++.+++||+|+++.
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~-~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~ 152 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-ERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV 152 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhH-hhhcccccccccCchHHccccccchhhhhhhc
Confidence 46789999999999988877643 5899999988776666433 3444444 455667666666778999999987
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+.+ .++.+.|||||.+++..
T Consensus 153 ~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 153 GVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp BBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred cHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 655443 35678899999998863
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.15 E-value=3e-11 Score=108.07 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=88.0
Q ss_pred cccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCcccccccCCCCCCCCC-CcccE
Q 015704 248 LHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGLIGVMHDWCEPFDTYP-RTYDL 321 (402)
Q Consensus 248 ~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~~~~~~~~~~~~~~-~sfD~ 321 (402)
+++.+|. +|||+|||+|.++.+|++.+.+ ..|.++| ++.+++.+.+ ++.+..++........|+ .+||+
T Consensus 70 l~ikpG~--~VLDlGcGsG~~~~~la~~~~~---g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 70 MPIKRDS--KILYLGASAGTTPSHVADIADK---GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCTTC--EEEEESCCSSHHHHHHHHHTTT---SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred CCCCCCC--EEEEeCEEcCHHHHHHHHhCCC---CEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCccccccccee
Confidence 3444443 4999999999999999987532 2455555 4555554444 344333333333334455 68888
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC----------hhhHHHHHHHHHhcCceEEEeecCCCCCCceE
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------IDVMDELQEIGKAMGWHVTLRETAEGPHASYR 391 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~----------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 391 (402)
+++.+.+.|.. ++..++.|+.|+|||||++++.+. ..+.+...+.+++-..++....+.. +..+.-
T Consensus 145 ~~i~~~~~~~~---~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~-py~~~H 220 (230)
T d1g8sa_ 145 DVIYEDVAQPN---QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIE-PFEKDH 220 (230)
T ss_dssp EEEEECCCSTT---HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECT-TTSTTE
T ss_pred EEeeccccchH---HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCC-CCcCCe
Confidence 88877777755 468899999999999999999842 1334555566666677776654322 333434
Q ss_pred EEE
Q 015704 392 ILT 394 (402)
Q Consensus 392 ~l~ 394 (402)
+||
T Consensus 221 ~~v 223 (230)
T d1g8sa_ 221 VMF 223 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.11 E-value=9.1e-11 Score=102.90 Aligned_cols=121 Identities=16% Similarity=0.188 Sum_probs=79.2
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhh----HHhcCc--ccccccCCCCCCC-CC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPV----IYDRGL--IGVMHDWCEPFDT-YP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~----~~~rg~--~~~~~~~~~~~~~-~~-~sfD~v~~~~ 326 (402)
..|||||||.|.+...||+...+. +++++| +..++.. +.+.|+ +..++...+.+.. || .++|.|++..
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~---~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CeEEEEeccCCHHHHHHHHHCCCC---ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 359999999999999999986544 455555 3444443 444466 5555554444443 57 8999999874
Q ss_pred ccc-----cccccCCHHHHHHHhhhhccCCcEEEE-EeChhhHHHHHHHHHhcCceEEE
Q 015704 327 LFS-----VESKRCNMSTIMLEMDRMLRPGGHVYI-RDSIDVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 327 ~~~-----~~~~~~~~~~~l~e~~RvLrpgG~~~~-~~~~~~~~~~~~~~~~~~w~~~~ 379 (402)
--. |...|---...|.++.|+|||||.+.+ ||..+-.+.+.+......|....
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccccc
Confidence 322 222121115899999999999999988 45555455555555566665543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.4e-11 Score=111.06 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=71.2
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC-----------------------------
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP----------------------------- 57 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~----------------------------- 57 (402)
.+.+|||+|||+|.+....+.. .|+++|+++.++..++.......+..
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 5679999999999776544433 69999999988866543221111000
Q ss_pred -cEEEeccc------cCCCCCCCCeeEEEecCcccccccC---hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 58 -AMVAAFAT------RRLPYPSQAFDLIHCSRCRINWTRD---DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 58 -~~~~~~d~------~~lp~~~~sfDlI~s~~~~~~~~~d---~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
......|+ ...+++.++||+|++..++++.+.+ ...++++++++|||||+|++.+.
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 01112232 2233456789999999987777655 46899999999999999999863
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.10 E-value=8.6e-11 Score=110.82 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=71.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChh----hHHhcCc---ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLP----VIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~----~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||+|.++..+++.|+. .|.++|.+.++. .+...|+ +..++...+.+ ++| .+||+|+|.-++
T Consensus 41 ~VLDlGcGtG~ls~~aa~~Ga~----~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l-~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 41 IVLDVGCGTGILSMFAAKHGAK----HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWMG 115 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCCS----EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCCB
T ss_pred EEEEeCCCCCHHHHHHHHhCCC----EEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhc-cCcccceeEEEEEecc
Confidence 5999999999999999999863 455555334443 3344455 55566555554 366 899999998888
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVY 355 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~ 355 (402)
.++.....++.++.+++|+|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 888777778999999999999999986
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.5e-10 Score=108.19 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=73.8
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++++|||||||+|.++..+++. .|+++|.++.+.. +. +..++.+. ...+...++.+++++.++||+|+|....
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~-~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HH-HHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence 5679999999999998888765 6999999986542 32 33334433 2346677889999998999999986554
Q ss_pred cccccC--hHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTRD--DGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~d--~~~~l~e~~r~LkpgG~li~~ 111 (402)
++.... +..++....+.|||||.++-+
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred eecccccccHHHHHHHHhcCCCCcEEecc
Confidence 433322 367788889999999998753
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=1.9e-10 Score=107.88 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=75.0
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++++|||||||+|.++..+++. .|+++|.++.. ..+ .+.++.++.. ..+...+..+++++.++||+|++....
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a-~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYA-VKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHH-HHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhh-hhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence 5789999999999998877764 58999998743 333 2444555543 346677889999998999999986553
Q ss_pred ccccc--ChHHHHHHHHHhcCCCeEEEEE
Q 015704 85 INWTR--DDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 85 ~~~~~--d~~~~l~e~~r~LkpgG~li~~ 111 (402)
..... ....++..+.|+|||||.++-.
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence 33332 3578999999999999998743
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=2e-10 Score=108.29 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=74.1
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
++.+|||||||+|.++..+++. .|+++|.++ +...+. +..++.+.. ..+...++.++++++++||+|++..+.
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~-~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHH-HHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence 5789999999999998887765 689999886 333333 444445443 346677889999999999999986554
Q ss_pred cccc--cChHHHHHHHHHhcCCCeEEEE
Q 015704 85 INWT--RDDGILLLEVNRMLRAGGYFAW 110 (402)
Q Consensus 85 ~~~~--~d~~~~l~e~~r~LkpgG~li~ 110 (402)
.+.. .....++..+.|+|||||.++-
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 3333 2357889999999999999863
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.06 E-value=4.1e-11 Score=103.69 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=81.5
Q ss_pred cccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-Cc
Q 015704 248 LHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RT 318 (402)
Q Consensus 248 ~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~s 318 (402)
+.+..+. .|||+|||+|.++..|+.++. .|+++| ++++++.+.++ |+ +..++.....+. ++ .+
T Consensus 29 l~~~~g~--~VLDiGcGsG~~s~~lA~~~~-----~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~-~~~~~ 100 (186)
T d1l3ia_ 29 AEPGKND--VAVDVGCGTGGVTLELAGRVR-----RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL-CKIPD 100 (186)
T ss_dssp HCCCTTC--EEEEESCTTSHHHHHHHTTSS-----EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-TTSCC
T ss_pred cCCCCCC--EEEEEECCeEcccccccccce-----EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-cccCC
Confidence 3455444 499999999999999998876 455666 45667666553 54 344443333322 34 79
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCceEE
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~~~ 378 (402)
||+|++..... .+..++.++.+.|||||++++.... +....+.+.+++..|+..
T Consensus 101 ~D~v~~~~~~~------~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 101 IDIAVVGGSGG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp EEEEEESCCTT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred cCEEEEeCccc------cchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 99999985433 3568999999999999999998753 445566667777666543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.05 E-value=1.7e-10 Score=101.55 Aligned_cols=142 Identities=13% Similarity=0.091 Sum_probs=81.8
Q ss_pred cccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhH----HhcCcccccccCCCCCCCCCCcccEE
Q 015704 248 LHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVI----YDRGLIGVMHDWCEPFDTYPRTYDLL 322 (402)
Q Consensus 248 ~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~----~~rg~~~~~~~~~~~~~~~~~sfD~v 322 (402)
+.+.+|. +|||+|||+|+++.+|++...+ ..|.++| ++.+++.+ ..++.+..+.........++..+|.+
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~---g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v 126 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDE---GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV 126 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTT---SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCE
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccC---CeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceE
Confidence 3444443 4999999999999999986321 1466666 45566444 44455445444333333344444433
Q ss_pred E-EccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh----------hhHHHHHHHHHhcCceEEEeecCCCCCCceE
Q 015704 323 H-AAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI----------DVMDELQEIGKAMGWHVTLRETAEGPHASYR 391 (402)
Q Consensus 323 ~-~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~----------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 391 (402)
. +.+.+.|.. +...+|.|+.|+|||||++++.+.. .+.+...+.++. .+++...-+. .|..+.-
T Consensus 127 d~v~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~-gf~i~E~i~L-~P~~~~H 201 (209)
T d1nt2a_ 127 DLIYQDIAQKN---QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEG-DFKIVKHGSL-MPYHRDH 201 (209)
T ss_dssp EEEEECCCSTT---HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHT-TSEEEEEEEC-TTTCTTE
T ss_pred EEEEecccChh---hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcc-CCCccCc
Confidence 2 223344533 4578999999999999999997521 223332222222 4555543322 1444566
Q ss_pred EEEEEecC
Q 015704 392 ILTADKRL 399 (402)
Q Consensus 392 ~l~~~k~~ 399 (402)
+||.-+.|
T Consensus 202 ~~v~~~r~ 209 (209)
T d1nt2a_ 202 IFIHAYRF 209 (209)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 77766543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.03 E-value=3.2e-10 Score=100.96 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=82.6
Q ss_pred cccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChh----hHHhcCcccccc-cCC--CCCCCCCCc
Q 015704 248 LHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLP----VIYDRGLIGVMH-DWC--EPFDTYPRT 318 (402)
Q Consensus 248 ~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~----~~~~rg~~~~~~-~~~--~~~~~~~~s 318 (402)
+++.+|. +|||+|||+|+++.+|++. |.+. .|.++| ++.+++ .+..++.+..+. +-. +.+.....+
T Consensus 69 l~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G---~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 69 FPIKPGK--SVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCTTC--EEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred cccCCCC--EEEEeccCCCHHHHHHHHHhCCCC---EEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccc
Confidence 3455553 4999999999999999985 2211 344444 344444 333444422222 211 112222368
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC----------hhhHHHHHHHHHhcCceEEEeecCCCCCC
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS----------IDVMDELQEIGKAMGWHVTLRETAEGPHA 388 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~----------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 388 (402)
+|+|++. +.|.. ....++.++.|+|||||+++|... .++.+.++++.+. .+++...-+..+-+.
T Consensus 144 vD~i~~d--~~~~~---~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~ 217 (227)
T d1g8aa_ 144 VDVIFED--VAQPT---QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEK 217 (227)
T ss_dssp EEEEEEC--CCSTT---HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSS
T ss_pred eEEEEEE--ccccc---hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCC
Confidence 8988875 33432 357899999999999999999731 2344455555443 677665543322223
Q ss_pred ceEEEEEEec
Q 015704 389 SYRILTADKR 398 (402)
Q Consensus 389 ~~~~l~~~k~ 398 (402)
.....+++|+
T Consensus 218 ~H~~vv~rK~ 227 (227)
T d1g8aa_ 218 DHALFVVRKT 227 (227)
T ss_dssp SEEEEEEECC
T ss_pred ceEEEEEEeC
Confidence 4567777775
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.5e-10 Score=103.00 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=70.7
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHc-----CCCcEEEeccccCCCCCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER-----GAPAMVAAFATRRLPYPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~-----~~~~~~~~~d~~~lp~~~~sfDlI 78 (402)
+++.+|||+|||+|..+..+++. .|+++|+++..+..+.....+.. .....+..+|....+.+.++||.|
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I 154 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI 154 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence 57789999999999887766642 79999999988776654433221 112345666766777777899999
Q ss_pred EecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+++....+.+ .++.+.|||||++++..
T Consensus 155 ~~~~~~~~ip-------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 155 HVGAAAPVVP-------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp EECSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred hhhcchhhcC-------HHHHhhcCCCcEEEEEE
Confidence 9886644432 35778999999999864
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.03 E-value=4.3e-10 Score=102.57 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=71.8
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC-cE-EEeccccCCCCCCCCeeEEEec
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP-AM-VAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~-~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
+++.+|||+|||+|.++..+++. .++++|+++.++..+.. ..+..+.. .. +...|. ...++...||.|+.
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~-~~~~~g~~~~v~~~~~d~-~~~~~~~~~D~V~~- 178 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES-NLTKWGLIERVTIKVRDI-SEGFDEKDVDALFL- 178 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH-HHHHTTCGGGEEEECCCG-GGCCSCCSEEEEEE-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-HHHHhccccCcEEEeccc-cccccccceeeeEe-
Confidence 47889999999999998888753 68999999988877763 34444542 33 333343 23466778999974
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+. +++..++.++.++|||||.+++..
T Consensus 179 ----d~-p~p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 179 ----DV-PDPWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp ----CC-SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred ----cC-CCHHHHHHHHHhhcCCCCEEEEEe
Confidence 33 378899999999999999999885
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=3.8e-10 Score=105.74 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=70.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCCCCCh----hhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTL----PVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~----~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||+|.++..+++.|+. .|.++|.+.+. +.+...|+ +..++...+.+. +| ++||+|+|..+.
T Consensus 36 ~VLDiGcG~G~ls~~aa~~Ga~----~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~-~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 36 VVLDVGSGTGILCMFAAKAGAR----KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWMG 110 (316)
T ss_dssp EEEEETCTTSHHHHHHHHTTCS----EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCCB
T ss_pred EEEEEecCCcHHHHHHHHhCCC----EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcc-cccceeEEEeeeeee
Confidence 4999999999999999998852 23444422222 33444465 555555555543 56 899999998887
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.++.....++.++.+++|+|||||.+|-.
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence 77777777899999999999999998743
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=4.5e-10 Score=104.92 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=69.7
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCCh---hhHHhcCc---ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTL---PVIYDRGL---IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~---~~~~~rg~---~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||+|||+|.++..+++.|+. .|.++| ++.+. +.+...+. +..++...+.+. +| ++||+|+|.-+.
T Consensus 38 ~VLDiGcG~G~lsl~aa~~Ga~----~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 38 VVLDVGCGTGILSMFAAKAGAK----KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMG 112 (311)
T ss_dssp EEEEETCTTSHHHHHHHHTTCS----EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCB
T ss_pred EEEEECCCCCHHHHHHHHcCCC----EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc-CccccceEEEEeeee
Confidence 5999999999999999999862 344444 23332 34444455 556665555543 55 899999998777
Q ss_pred ccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 329 SVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+++.....++.++...+|+|||||.++-+
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred eecccccccHHHHHHHHhcCCCCcEEecc
Confidence 77765545678888899999999999854
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=2.4e-10 Score=101.83 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=71.5
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccc---cCCCCCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFAT---RRLPYPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~---~~lp~~~~sfDlI~s 80 (402)
+++.+|||+|||+|.++.++++. .|+++|+++.++..+. +.++.++ .......|. ...+.....+|+|++
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~~-~~~~i~~d~~~~~~~~~~~~~vD~i~~ 149 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEERR-NIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSCT-TEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhcC-CceEEEEECCCcccccccccceEEEEE
Confidence 57889999999999999888863 6999999998876554 3443332 222333332 333445578999986
Q ss_pred cCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
. ++..++...++.++.+.|||||.++++.
T Consensus 150 d---~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 150 D---VAQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp C---CCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred E---ccccchHHHHHHHHHHhcccCCeEEEEE
Confidence 4 2334467889999999999999999974
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=2.5e-09 Score=97.55 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=75.8
Q ss_pred cCCCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCC-cEEEeccccCCCCCCCCeeEEEec
Q 015704 7 WIRLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAP-AMVAAFATRRLPYPSQAFDLIHCS 81 (402)
Q Consensus 7 ~~~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~-~~~~~~d~~~lp~~~~sfDlI~s~ 81 (402)
....+.+|||+|||+|.++..++.. .++++|+++..+..+. +.++..+.. ..+...|... ++++++||+|+||
T Consensus 105 ~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~-~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsN 182 (274)
T d2b3ta1 105 LPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSN 182 (274)
T ss_dssp SCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEEC
T ss_pred hcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH-HHHHHhCcccceeeeccccc-ccCCCceeEEEec
Confidence 3445678999999999888777653 7999999998887766 556666665 3455556432 4556799999998
Q ss_pred Cccccccc----------C--------------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 82 RCRINWTR----------D--------------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 82 ~~~~~~~~----------d--------------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
...+.-.+ + ..+++.++.+.|+|||.+++..
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 76543210 0 1357888999999999999984
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=4.2e-10 Score=105.95 Aligned_cols=101 Identities=11% Similarity=-0.014 Sum_probs=73.6
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHH--H-------cCCCcEEEeccccCCCCCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFAL--E-------RGAPAMVAAFATRRLPYPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~--~-------~~~~~~~~~~d~~~lp~~~~sf 75 (402)
.++.+|||+|||+|.++..++.. .++|+|+++.++..+...... . ...+..+..+|+..+++.+..|
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~ 229 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 229 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence 45779999999999988777642 589999999877655432221 1 1223457788888888766544
Q ss_pred --eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 76 --DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 76 --DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
|+|+++. +.+ .++....+.++.+.|||||.++..
T Consensus 230 ~advi~~~~-~~f-~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 230 NTSVIFVNN-FAF-GPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HCSEEEECC-TTT-CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cceEEEEcc-eec-chHHHHHHHHHHHhCCCCcEEEEe
Confidence 6777654 344 347789999999999999999876
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.88 E-value=6.4e-10 Score=100.29 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCC-C
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYP-R 317 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~-~ 317 (402)
.+.+|. +|||+|||+|.++.+|+.. +.+ ..|..+| ++.+++.|.++ +. +...+ +.++ .++ .
T Consensus 82 ~i~pG~--rVLEiG~GsG~lt~~la~~v~~~---g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~---~~~~~ 153 (250)
T d1yb2a1 82 GLRPGM--DILEVGVGSGNMSSYILYALNGK---GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FISDQ 153 (250)
T ss_dssp CCCTTC--EEEEECCTTSHHHHHHHHHHTTS---SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CCCSC
T ss_pred CCCCcC--EEEEeeeeCcHHHHHHHHHhCCC---cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec---ccccc
Confidence 455553 4999999999999999864 221 1455556 45667666653 22 33333 2222 245 7
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCce
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWH 376 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~ 376 (402)
+||.|+++ -.++..+|.++.|+|||||++++..+. +..+++-+.++.-.|.
T Consensus 154 ~fD~V~ld--------~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 154 MYDAVIAD--------IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205 (250)
T ss_dssp CEEEEEEC--------CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred eeeeeeec--------CCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence 99999875 334678999999999999999998775 2333444444444453
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.87 E-value=3.8e-10 Score=102.46 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=76.2
Q ss_pred HHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc------Cc---ccccccCCCCCC
Q 015704 245 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR------GL---IGVMHDWCEPFD 313 (402)
Q Consensus 245 ~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r------g~---~~~~~~~~~~~~ 313 (402)
...+.+..|. +|||+|||+|.++.+|+.. |.+ ..|...| ++.+++.|.++ +. +...+.-... .
T Consensus 89 i~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~---G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~-~ 162 (264)
T d1i9ga_ 89 VHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPA---GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD-S 162 (264)
T ss_dssp HHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTT---SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG-C
T ss_pred HHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCC---cEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc-c
Confidence 3445566554 4999999999999999875 322 1455555 45666666542 11 2222222222 3
Q ss_pred CCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHHHhcCce
Q 015704 314 TYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIGKAMGWH 376 (402)
Q Consensus 314 ~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~~~~~w~ 376 (402)
++| ++||.|+++ ++ +|..++.++.|+|||||.+++-.+. |+.+.++.+-..-.|.
T Consensus 163 ~~~~~~fDaV~ld-----lp---~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 163 ELPDGSVDRAVLD-----ML---APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp CCCTTCEEEEEEE-----SS---CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred cccCCCcceEEEe-----cC---CHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 577 899999864 44 5689999999999999999998775 3344444443344564
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.87 E-value=1.6e-09 Score=96.08 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=65.0
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
+++.+|||||||+|+++..|+.. .|+++|+++.....+..... ...+..+...|......+.++||.|+++.+..+
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~--~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ 146 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLS--YYNNIKLILGDGTLGYEEEKPYDRVVVWATAPT 146 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHT--TCSSEEEEESCGGGCCGGGCCEEEEEESSBBSS
T ss_pred cccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHh--cccccccccCchhhcchhhhhHHHHHhhcchhh
Confidence 46789999999999998877764 78999998866655442211 222344555564443334578999998766444
Q ss_pred cccChHHHHHHHHHhcCCCeEEEEE
Q 015704 87 WTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 87 ~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
.+ ..+.+.|||||.+++-
T Consensus 147 ip-------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 147 LL-------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp CC-------HHHHHTEEEEEEEEEE
T ss_pred hh-------HHHHHhcCCCCEEEEE
Confidence 32 3456789999999885
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=7.4e-10 Score=97.75 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=65.1
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc--ccccccCCCCCCC
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMHDWCEPFDT 314 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~~~~~~~~~ 314 (402)
...+.+.+..|. +|||+|||+|.+++.|++. |.+ ..|+.+| ++.+++.+.++ ++ +..++.......+
T Consensus 66 ~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~---g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 66 LFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEK---GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred HHHHhhhccccc--eEEEecCccchhHHHHHHHhCCC---CcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc
Confidence 344555666554 5999999999999999875 211 1345554 34555555443 33 2223322222222
Q ss_pred CCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 315 YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 315 ~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
..++||+|++..+++|.++ ++.|.|||||.+++-.
T Consensus 141 ~~~~fD~I~~~~~~~~~p~---------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVPE---------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCEEEEEECSBBSCCCH---------HHHHHEEEEEEEEEEB
T ss_pred cccchhhhhhhccHHHhHH---------HHHHhcCCCcEEEEEE
Confidence 2278999999998888652 5678899999999854
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=1.3e-09 Score=99.31 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=74.5
Q ss_pred HhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCC-CCCCC-C
Q 015704 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEP-FDTYP-R 317 (402)
Q Consensus 246 ~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~-~~~~~-~ 317 (402)
..+.+..|. +|||+|||+|.++.+|+.. +.. ..|..+| ++.+++.|.++ |+...+.-...+ ...++ .
T Consensus 97 ~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~---G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~ 171 (266)
T d1o54a_ 97 MMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSS---GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 171 (266)
T ss_dssp HHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTT---CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCC---cEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccc
Confidence 344555554 4999999999999999865 211 2455666 45566555443 542222111111 13355 7
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh-hhHHHHHHHHHhcCce
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI-DVMDELQEIGKAMGWH 376 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~-~~~~~~~~~~~~~~w~ 376 (402)
+||.|+.+ + .++..+|.++.|+|||||.+++-.+. +...++-+.++.-.|.
T Consensus 172 ~~D~V~~d-----~---p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 172 DVDALFLD-----V---PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp SEEEEEEC-----C---SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred ceeeeEec-----C---CCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 89988654 3 45789999999999999999987664 3344444555555674
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=4.8e-09 Score=98.01 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=68.2
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHc----------CC-CcEEEeccccCCC--C
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALER----------GA-PAMVAAFATRRLP--Y 70 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~----------~~-~~~~~~~d~~~lp--~ 70 (402)
.++.+|||+|||+|.++..|++. .|+++|+++.++..+..+..+.. .. ...+...|+.... +
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~ 176 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 176 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence 47889999999999999888763 69999999887766664443211 11 2235555655443 4
Q ss_pred CCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 71 PSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 71 ~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++.+||.|+.. . ++|..++.++.++|||||.+++..
T Consensus 177 ~~~~fD~V~LD-----~-p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 177 KSLTFDAVALD-----M-LNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp ----EEEEEEC-----S-SSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred CCCCcceEeec-----C-cCHHHHHHHHHHhccCCCEEEEEe
Confidence 56789999853 2 256678999999999999999875
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=1.3e-08 Score=95.02 Aligned_cols=113 Identities=16% Similarity=0.086 Sum_probs=78.6
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccC----CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRR----LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~----lp~~~~sfDlI~s~~ 82 (402)
++.+|||++||+|.++.+++.. .|+++|+++..+..+. +.+..+++.. .+...|..+ ++...++||+|++..
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHH-HHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 5679999999999999887643 8999999998887666 5555666654 355555432 344567899999865
Q ss_pred ccccccc--------ChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHH
Q 015704 83 CRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQE 123 (402)
Q Consensus 83 ~~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~ 123 (402)
....... +...++..+.++|+|||.+++++....-+..++.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~ 272 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFY 272 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHH
Confidence 4332221 1246788899999999999998743333333333
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.70 E-value=1.5e-08 Score=89.01 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=67.6
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+++.+|||||||+|+.+..++.. .|+++|..+.....+. +...+.+..+ .+..+|......+.+.||.|++....
T Consensus 77 ~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~-~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~ 155 (215)
T d1jg1a_ 77 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAK-RNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGA 155 (215)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred CccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHH-HHHHHcCCceeEEEECccccCCcccCcceeEEeeccc
Confidence 46789999999999988776643 6899999986665554 4444455544 46666765544556889999987654
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+. |.. +.+.|+|||++++-.
T Consensus 156 ~~i---p~~----l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 156 PKI---PEP----LIEQLKIGGKLIIPV 176 (215)
T ss_dssp SSC---CHH----HHHTEEEEEEEEEEE
T ss_pred ccC---CHH----HHHhcCCCCEEEEEE
Confidence 433 233 456799999998863
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.69 E-value=1.9e-08 Score=94.16 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=79.6
Q ss_pred cccCCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC----CCCCCCCe
Q 015704 5 NTWIRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR----LPYPSQAF 75 (402)
Q Consensus 5 ~~~~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~----lp~~~~sf 75 (402)
..+-+++.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++.+++. ..+...|+.+ ++....+|
T Consensus 140 ~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~-~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 140 EKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp GGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred HhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHH-HHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence 334456889999999999999877754 6999999998776665 455556653 2355555322 33456789
Q ss_pred eEEEecCccccccc--------ChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHH
Q 015704 76 DLIHCSRCRINWTR--------DDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQ 122 (402)
Q Consensus 76 DlI~s~~~~~~~~~--------d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el 122 (402)
|+|++......-.. +...++..+.++|+|||.|++++....-+..++
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f 273 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMF 273 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHH
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHH
Confidence 99998654332211 124578888999999999999874433343333
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=5.7e-09 Score=93.76 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=67.6
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCccccc-ccCCCCCCCCCCcccEEEEcccccc
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~-~~~~~~~~~~~~sfD~v~~~~~~~~ 330 (402)
+++++.|||+|||.|.++..++++..++.++ -.|-+..++.+....-+..+ ++.. .+.| ..|+++++++|++
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~---v~Dlp~vi~~~~~~~ri~~~~gd~~---~~~p-~~D~~~l~~vLh~ 151 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGI---NFDLPQVIENAPPLSGIEHVGGDMF---ASVP-QGDAMILKAVCHN 151 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECHHHHTTCCCCTTEEEEECCTT---TCCC-CEEEEEEESSGGG
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEE---EecchhhhhccCCCCCeEEecCCcc---cccc-cceEEEEehhhhh
Confidence 5688999999999999999999886544322 22222222111111112222 3332 3345 4499999999999
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+.+. +...+|+.+.+.|+|||.++|.|
T Consensus 152 ~~de-~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 152 WSDE-KCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp SCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHH-HHHHHHHHHHHHcCCCcEEEEEE
Confidence 8853 45799999999999999999987
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=3.2e-09 Score=99.77 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=65.7
Q ss_pred HHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc-----------Cc----ccccc
Q 015704 244 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR-----------GL----IGVMH 306 (402)
Q Consensus 244 y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r-----------g~----~~~~~ 306 (402)
..+.+.+.++. .|||+|||.|.++..++.. ++ ..++++| ++.+++.|.+. |+ +..++
T Consensus 143 ~~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~----~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~ 216 (328)
T d1nw3a_ 143 MIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNC----KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 216 (328)
T ss_dssp HHHHSCCCTTC--EEEEETCTTSHHHHHHHHHCCC----SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred HHHHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCC----CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence 34445565555 4999999999999888765 32 2455555 44555444332 22 33444
Q ss_pred cCCCCCCCCC-Ccc--cEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 307 DWCEPFDTYP-RTY--DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 307 ~~~~~~~~~~-~sf--D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
.-.... +|. ..| |+|+++ .+.|.+ ++...|.||.|+|||||.+|+.+
T Consensus 217 gd~~~~-~~~~~~~~advi~~~-~~~f~~---~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 217 GDFLSE-EWRERIANTSVIFVN-NFAFGP---EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCTTSH-HHHHHHHHCSEEEEC-CTTTCH---HHHHHHHHHHTTCCTTCEEEESS
T ss_pred Cccccc-ccccccCcceEEEEc-ceecch---HHHHHHHHHHHhCCCCcEEEEec
Confidence 333221 233 344 677765 455654 35799999999999999999875
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.66 E-value=1.8e-08 Score=89.20 Aligned_cols=97 Identities=13% Similarity=0.208 Sum_probs=66.5
Q ss_pred CCCCeEEEECCccchhHHHHccC----------CceEEeCCccchHHHHHHHHHH----cCC-CcEEEeccccCCCCCCC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----------NVITMSIAPKDVHENQIQFALE----RGA-PAMVAAFATRRLPYPSQ 73 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----------~v~~vdi~~~~~~~a~~~~a~~----~~~-~~~~~~~d~~~lp~~~~ 73 (402)
+++.+|||||||+|+.+..++.. +|+++|..+..+..+....... .+. +..+...|......+.+
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~ 158 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA 158 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccc
Confidence 46789999999999988777643 4889999887665554322111 112 33455667655555667
Q ss_pred CeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 74 AFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 74 sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+||.|++.....+.+ ..+.+.|||||++++-.
T Consensus 159 ~fD~Iiv~~a~~~~p-------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 159 PYNAIHVGAAAPDTP-------TELINQLASGGRLIVPV 190 (223)
T ss_dssp SEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred ceeeEEEEeechhch-------HHHHHhcCCCcEEEEEE
Confidence 899999876644332 24678999999998863
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=8.3e-09 Score=96.32 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=69.4
Q ss_pred HhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc--------------C---cccccc
Q 015704 246 RALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR--------------G---LIGVMH 306 (402)
Q Consensus 246 ~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r--------------g---~~~~~~ 306 (402)
..+.+..|. .|||+|||+|.++.+|+.. |.+. .|...| .+.+++.|.++ + .+...|
T Consensus 92 ~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G---~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 92 SMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHhCCCCCC--EEEEecccccHHHHHHHHHhCCCc---EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 344566554 4999999999999999875 2222 344444 34455544332 1 133333
Q ss_pred -cCCCCCCCCC-CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh--hhHHHHHHHH-HhcCceEE
Q 015704 307 -DWCEPFDTYP-RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI--DVMDELQEIG-KAMGWHVT 378 (402)
Q Consensus 307 -~~~~~~~~~~-~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~--~~~~~~~~~~-~~~~w~~~ 378 (402)
+.+.....++ .+||.|+.. ++ +|..+|.++.|+|||||.+++-.+. |+.+.++.+- .++.|...
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD-----~p---~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i 235 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALD-----ML---NPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE 235 (324)
T ss_dssp SCTTCCC-------EEEEEEC-----SS---STTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred cchhhcccccCCCCcceEeec-----Cc---CHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence 2222223345 699999863 23 4567999999999999999987664 3333333332 24578644
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=8.8e-09 Score=98.75 Aligned_cols=101 Identities=12% Similarity=0.009 Sum_probs=66.9
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH------cCC---CcEE-EeccccCCCC---C
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE------RGA---PAMV-AAFATRRLPY---P 71 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~------~~~---~~~~-~~~d~~~lp~---~ 71 (402)
+++.+|||||||+|.++..++.. .++|+|+++.++..+..+.... .+. .... ...+....++ .
T Consensus 215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~ 294 (406)
T d1u2za_ 215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 294 (406)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence 46789999999999988877753 6899999998876665333221 111 1111 2222222111 1
Q ss_pred CCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 72 SQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 72 ~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
-..+|+|+++. .++.++....|.++.+.|||||.++.+
T Consensus 295 ~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 295 IPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp GGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 13578888754 334457889999999999999999876
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=2.6e-08 Score=90.68 Aligned_cols=132 Identities=16% Similarity=0.308 Sum_probs=89.0
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc--ccccc-cCCCCCCCCC-CcccEEEEcc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL--IGVMH-DWCEPFDTYP-RTYDLLHAAG 326 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~--~~~~~-~~~~~~~~~~-~sfD~v~~~~ 326 (402)
.+|||+|||+|..+..|+....+ ..|+++| ++..++.|.+. |+ +..++ ++. .+++ ..||+|+|.-
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~p~---~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~---~~~~~~~fDlIvsNP 183 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASERPD---CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWF---SALAGQQFAMIVSNP 183 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTT---SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTT---GGGTTCCEEEEEECC
T ss_pred cceeeeehhhhHHHHHHHhhCCc---ceeeeccchhHHHhHHHHHHHHhCcccceeeecccc---cccCCCceeEEEecc
Confidence 34999999999999999887532 3667777 55666554433 33 44444 333 3345 6999999952
Q ss_pred -------------ccccccccC---------CHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCce-EEEeecC
Q 015704 327 -------------LFSVESKRC---------NMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWH-VTLRETA 383 (402)
Q Consensus 327 -------------~~~~~~~~~---------~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~ 383 (402)
+..|-+... ....++.+..+.|+|||++++-=.......+.+++++-.|+ +...++-
T Consensus 184 PYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl 263 (274)
T d2b3ta1 184 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY 263 (274)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT
T ss_pred hhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECC
Confidence 222222110 12368899999999999999965444567888888888886 5556654
Q ss_pred CCCCCceEEEEEE
Q 015704 384 EGPHASYRILTAD 396 (402)
Q Consensus 384 ~~~~~~~~~l~~~ 396 (402)
. +..++++++
T Consensus 264 ~---g~~R~v~~r 273 (274)
T d2b3ta1 264 G---DNERVTLGR 273 (274)
T ss_dssp T---SSEEEEEEE
T ss_pred C---CCceEEEEe
Confidence 3 478888875
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=6.6e-09 Score=99.62 Aligned_cols=108 Identities=9% Similarity=0.094 Sum_probs=67.9
Q ss_pred HHHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCc------------ccccc-
Q 015704 242 ESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGL------------IGVMH- 306 (402)
Q Consensus 242 ~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~------------~~~~~- 306 (402)
....+.+.+..+.. |||+|||.|.++..+|.. |+ ..++++| ++.+++.|.++.- .+...
T Consensus 206 ~~Il~~l~Lkpgd~--fLDLGCG~G~~vl~aA~~~g~----~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~ 279 (406)
T d1u2za_ 206 SDVYQQCQLKKGDT--FMDLGSGVGNCVVQAALECGC----ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279 (406)
T ss_dssp HHHHHHTTCCTTCE--EEEESCTTSHHHHHHHHHHCC----SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHhCCCCCCE--EEeCCCCCcHHHHHHHHHcCC----CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence 34445556666654 999999999999999876 32 1456666 5566666655421 00000
Q ss_pred cCCCCC---CCCC---CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 307 DWCEPF---DTYP---RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 307 ~~~~~~---~~~~---~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.....+ ..++ ..+|+|++++ +.|.+ ++...|.||.|+|||||.+|.+++
T Consensus 280 ~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~---~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 280 SLKKSFVDNNRVAELIPQCDVILVNN-FLFDE---DLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECC-TTCCH---HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred eeeechhhccccccccccceEEEEec-ccCch---HHHHHHHHHHHhcCCCcEEEEecc
Confidence 000111 1111 3567888765 34544 468999999999999999998763
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.56 E-value=2.3e-08 Score=86.45 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=35.7
Q ss_pred CCCCCeeEEEecCcccccccCh-HHHHHHHHHhcCCCeEEEEE
Q 015704 70 YPSQAFDLIHCSRCRINWTRDD-GILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 70 ~~~~sfDlI~s~~~~~~~~~d~-~~~l~e~~r~LkpgG~li~~ 111 (402)
.+.+.||+|+|.++++++.++. .++++.+++.|+|||+|++.
T Consensus 128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3457899999999988876443 68999999999999999987
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=8.6e-09 Score=91.41 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=56.3
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhc----Cc-------ccccccCCCCCCCCC-CcccEE
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDR----GL-------IGVMHDWCEPFDTYP-RTYDLL 322 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~r----g~-------~~~~~~~~~~~~~~~-~sfD~v 322 (402)
+|||+|||+|.+++.|+.. |.. ..|+.+| .+.+++.+.++ ++ +...+.-... ..++ .+||+|
T Consensus 79 ~VLdiG~GsGy~ta~la~l~~~~---g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~-~~~~~~~fD~I 154 (224)
T d1i1na_ 79 KALDVGSGSGILTACFARMVGCT---GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM-GYAEEAPYDAI 154 (224)
T ss_dssp EEEEETCTTSHHHHHHHHHHCTT---CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG-CCGGGCCEEEE
T ss_pred eEEEecCCCCHHHHHHHHHhCCC---ceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc-ccchhhhhhhh
Confidence 4999999999999888875 211 1344555 34455444332 22 1122211111 1223 699999
Q ss_pred EEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 323 HAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++..++.+++ .++.+.|||||.+++-.
T Consensus 155 ~~~~~~~~ip---------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 155 HVGAAAPVVP---------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp EECSBBSSCC---------HHHHHTEEEEEEEEEEE
T ss_pred hhhcchhhcC---------HHHHhhcCCCcEEEEEE
Confidence 9998888765 25678999999999853
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.52 E-value=2.8e-08 Score=85.99 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=37.4
Q ss_pred CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 317 RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
..||+|+|.|||.|+++. ....+|..+.+.|+|||++++-...
T Consensus 131 ~~fDvI~CRNVLiYf~~~-~~~~vl~~l~~~L~pGG~L~lG~sE 173 (193)
T d1af7a2 131 GPFDAIFCRNVMIYFDKT-TQEDILRRFVPLLKPDGLLFAGHSE 173 (193)
T ss_dssp CCEEEEEECSSGGGSCHH-HHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred CCccEEEeehhHHhcCHH-HHHHHHHHHHHHhCCCcEEEEecCc
Confidence 789999999999999853 4468999999999999999997543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.52 E-value=4.5e-08 Score=82.93 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC----CCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR----LPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~----lp~~~~sfDlI~s~~ 82 (402)
..+.+|||+|||+|.++...+.+ .++++|.++..+..+. +.++..+....+...+.+. ......+||+|++..
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~-~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLK-ENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHH-HHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhh-HHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 45779999999999998877665 6788999987776554 4455556655554443221 234457899999876
Q ss_pred cccccccChHHHHHHH--HHhcCCCeEEEEEe
Q 015704 83 CRINWTRDDGILLLEV--NRMLRAGGYFAWAA 112 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~--~r~LkpgG~li~~~ 112 (402)
.+ +. +....+.++ ..+|+|||++++..
T Consensus 119 PY-~~--~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 119 PY-AM--DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CT-TS--CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred cc-cc--CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 52 22 333444444 35799999999975
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.51 E-value=4e-08 Score=86.80 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=61.8
Q ss_pred HHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC--C
Q 015704 245 VRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP--R 317 (402)
Q Consensus 245 ~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~--~ 317 (402)
.+.+.+..+. +|||+|||+|.+++.|+..+. .|+.++ .+...+.|.++ ..+..++.-. ...+| .
T Consensus 63 l~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~-----~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~--~~g~~~~~ 133 (224)
T d1vbfa_ 63 LDELDLHKGQ--KVLEIGTGIGYYTALIAEIVD-----KVVSVEINEKMYNYASKLLSYYNNIKLILGDG--TLGYEEEK 133 (224)
T ss_dssp HHHTTCCTTC--EEEEECCTTSHHHHHHHHHSS-----EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG--GGCCGGGC
T ss_pred HHHhhhcccc--eEEEecCCCCHHHHHHHHHhc-----ccccccccHHHHHHHHHHHhcccccccccCch--hhcchhhh
Confidence 3444555554 599999999999999999876 344444 33444444433 1133333221 12244 5
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.||.|++...++++++ ++.+.|||||.+++-
T Consensus 134 pfD~Iiv~~a~~~ip~---------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 134 PYDRVVVWATAPTLLC---------KPYEQLKEGGIMILP 164 (224)
T ss_dssp CEEEEEESSBBSSCCH---------HHHHTEEEEEEEEEE
T ss_pred hHHHHHhhcchhhhhH---------HHHHhcCCCCEEEEE
Confidence 7999999988877652 345789999999984
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.48 E-value=4.2e-08 Score=81.46 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=67.8
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccC-CCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRR-LPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~-lp~~~~sfDlI~s~~~ 83 (402)
.+.+|||+|||+|.++...+.+ .|+++|.++..+.... +.+...+... .+...|+.. ++...++||+|++...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~-~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ-DNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHH-HHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhh-hhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 5789999999999998766654 7899999987665444 4444444433 345556433 3455788999998654
Q ss_pred ccccccChHHHHHHHH--HhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVN--RMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~--r~LkpgG~li~~~ 112 (402)
+. .......+..+. ++|+|||.+++.+
T Consensus 93 y~--~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YA--KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SH--HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hc--cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 21 112345565553 5799999999985
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.48 E-value=2.1e-07 Score=86.42 Aligned_cols=113 Identities=9% Similarity=0.007 Sum_probs=75.5
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccC----CCCCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRR----LPYPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~----lp~~~~sfDlI 78 (402)
.++.+|||++||+|.++..++.. .|+++|+++..+..+.. .+..+++. ..+...|+.+ +.-..++||+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~-N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLA-HFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHH-HHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHH-HHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 35789999999999998776543 68999999988866663 34444442 3355555422 22245689999
Q ss_pred EecCccccc--------ccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHH
Q 015704 79 HCSRCRINW--------TRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQ 122 (402)
Q Consensus 79 ~s~~~~~~~--------~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el 122 (402)
++....+.- ..+...++..+.++|+|||.+++++....-+..++
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f 273 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQF 273 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHH
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHH
Confidence 986543221 11234688889999999999999975333333333
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=1.5e-07 Score=85.03 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=71.8
Q ss_pred CCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA--MVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||+|||+|.++..++.+ .|+++|+++..+..+. +.++.+++.. .+..+|+..++. .+.||.|+++..
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~-~N~~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p 183 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV-ENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 183 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH-HHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHH-HHHHHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC
Confidence 56889999999999998877643 7999999997775554 5555566644 456677766653 478999997532
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.....++.++.+.|++||++.+..
T Consensus 184 -----~~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 184 -----VRTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred -----CchHHHHHHHHhhcCCCCEEEEEe
Confidence 133567888999999999987653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.39 E-value=2.2e-07 Score=80.21 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=49.5
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.+++|||+|||+|.++..++.. .|+++|+++..+ +.++++.....+...|+..++ ++||+|++|..+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~-----~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-----ETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-----HHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHH-----HHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 5789999999999887655543 699999887544 445555444567777776654 689999998664
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.37 E-value=2e-07 Score=83.36 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcC-cccccccCCCCCCCCCCcccEEEEccccccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRG-LIGVMHDWCEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg-~~~~~~~~~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
+++++|||+|||.|.++..|+++..+..++ -.|-+..++.+.... +....++..+ +.|. .|+++.+++++++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~---v~Dlp~vi~~~~~~~r~~~~~~d~~~---~~P~-ad~~~l~~vlh~~ 152 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGI---NFDLPHVIEDAPSYPGVEHVGGDMFV---SIPK-ADAVFMKWICHDW 152 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEE---EEECTTTTTTCCCCTTEEEEECCTTT---CCCC-CSCEECSSSSTTS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEE---EcccHHhhhhcccCCceEEecccccc---cCCC-cceEEEEEEeecC
Confidence 468899999999999999999985443322 222222232222222 2223334333 3453 4777888999888
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.+. +...+|+++.+.|||||.++|-|.
T Consensus 153 ~d~-~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 153 SDE-HCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp CHH-HHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred CHH-HHHHHHHHHHHhcCCCceEEEEEE
Confidence 753 568999999999999999999863
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.36 E-value=4.5e-08 Score=91.28 Aligned_cols=119 Identities=18% Similarity=0.202 Sum_probs=70.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc--ccccccCC----CCCCCCCCcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL--IGVMHDWC----EPFDTYPRTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~--~~~~~~~~----~~~~~~~~sfD~v~~ 324 (402)
.+|||++||+|+|+.+++..+. .|+.+| ++.+++.+.+ .|+ +..++..+ +.+.....+||+|++
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~~-----~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGFR-----EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHEE-----EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeeeccCCCCcHHHHHHHhcCC-----cEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4699999999999999987654 667776 4556654443 354 22222111 111112269999998
Q ss_pred ccc-ccccc-----ccCCHHHHHHHhhhhccCCcEEEEEeCh------hhHHHHHHHHHhcCceEEE
Q 015704 325 AGL-FSVES-----KRCNMSTIMLEMDRMLRPGGHVYIRDSI------DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 325 ~~~-~~~~~-----~~~~~~~~l~e~~RvLrpgG~~~~~~~~------~~~~~~~~~~~~~~w~~~~ 379 (402)
.-= +.... ...+...++....++|||||.++++... +..+.+.+.+..-..++.+
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~ 288 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRV 288 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEE
Confidence 521 11110 0011246888999999999999997532 3344555555555555444
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.33 E-value=5.4e-07 Score=78.13 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=52.7
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
.+.+|||+|||+|.++..++.+ .|+++|+++..+..+. +.++..+....+...|...+ ++.||+|+++..+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~-~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH-HHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 5679999999999988766554 6899999987765554 33445566666777676554 4679999998764
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.33 E-value=2.6e-07 Score=83.39 Aligned_cols=110 Identities=14% Similarity=0.186 Sum_probs=72.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhH----HhcCc---ccccccCCCCCCCCC--CcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVI----YDRGL---IGVMHDWCEPFDTYP--RTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~----~~rg~---~~~~~~~~~~~~~~~--~sfD~v~~~~ 326 (402)
+|||+|||+|+|+-.++++|+ . .|.++| ++.+++.+ ...|+ +..++.-+ ..++ ..||.|++..
T Consensus 110 ~VlD~~aG~G~~~l~~a~~~~-~---~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---~~~~~~~~~D~Ii~~~ 182 (260)
T d2frna1 110 LVVDMFAGIGHLSLPIAVYGK-A---KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFPGENIADRILMGY 182 (260)
T ss_dssp EEEETTCTTTTTHHHHHHHTC-C---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCCCCSCEEEEEECC
T ss_pred EEEECcceEcHHHHHHHHhCC-c---EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---HHhccCCCCCEEEECC
Confidence 499999999999999998874 1 445555 33444333 23355 44444333 3343 6899998752
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEEeC-------hhhHHHHHHHHHhcCceEEEe
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDS-------IDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-------~~~~~~~~~~~~~~~w~~~~~ 380 (402)
...-...|.+..++|||||++.+-+. .+..+.++++.+...+++...
T Consensus 183 -------p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 183 -------VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp -------CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred -------CCchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 12235788889999999999866431 234567778888888887643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.24 E-value=2.9e-07 Score=82.30 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=65.8
Q ss_pred CCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcCccccc-ccCCCCCCCCCCcccEEEEccccc
Q 015704 251 KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRGLIGVM-HDWCEPFDTYPRTYDLLHAAGLFS 329 (402)
Q Consensus 251 ~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg~~~~~-~~~~~~~~~~~~sfD~v~~~~~~~ 329 (402)
.+++.++|||+|||.|.++..++++..+.. ++-.|-+..++.+....-+..+ ++..+ +. ..+|+++++++|+
T Consensus 77 ~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~---~~v~Dlp~vi~~~~~~~rv~~~~gD~f~---~~-p~aD~~~l~~vLH 149 (244)
T d1fp2a2 77 VFDGLESIVDVGGGTGTTAKIICETFPKLK---CIVFDRPQVVENLSGSNNLTYVGGDMFT---SI-PNADAVLLKYILH 149 (244)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCBTTEEEEECCTTT---CC-CCCSEEEEESCGG
T ss_pred cccCceEEEEecCCccHHHHHHHHhCCCCe---EEEecCHHHHHhCcccCceEEEecCccc---CC-CCCcEEEEEeecc
Confidence 346788899999999999999999854332 2222222222211111112222 23222 22 3679999999999
Q ss_pred cccccCCHHHHHHHhhhhccCC---cEEEEEe
Q 015704 330 VESKRCNMSTIMLEMDRMLRPG---GHVYIRD 358 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpg---G~~~~~~ 358 (402)
++.+. +...+|+.+.+.|+|| |.++|-|
T Consensus 150 dw~d~-~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 150 NWTDK-DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp GSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cCChH-HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 99863 4568999999999999 7787775
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.21 E-value=6.9e-07 Score=79.78 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=64.2
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCC-CcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGA-PAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~-~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
...+|||||||+|.++..++++ +++..|+-. . ++. .... ...+..+|..+ +.| ..|++++..++
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-----v-i~~--~~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vL 149 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-----V-IEN--APPLSGIEHVGGDMFA-SVP--QGDAMILKAVC 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-----H-HTT--CCCCTTEEEEECCTTT-CCC--CEEEEEEESSG
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-----h-hhc--cCCCCCeEEecCCccc-ccc--cceEEEEehhh
Confidence 4579999999999999888865 556666521 1 111 1111 23345556432 333 45999999998
Q ss_pred cccccCh-HHHHHHHHHhcCCCeEEEEEe
Q 015704 85 INWTRDD-GILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~-~~~l~e~~r~LkpgG~li~~~ 112 (402)
++|.++. ..+|+++++.|+|||.+++..
T Consensus 150 h~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 150 HNWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9987543 678999999999999999975
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=1.8e-06 Score=73.56 Aligned_cols=100 Identities=9% Similarity=-0.048 Sum_probs=68.1
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCc-EEEecccc-CCCCCCCCeeEEEecCcc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATR-RLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~-~lp~~~~sfDlI~s~~~~ 84 (402)
.+.+|||++||+|.++...+.+ .|+.+|.+...+..... .+...+... .+...|+. .+.....+||+|++...+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~-N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIK-NLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHH-HHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 4679999999999999877765 68999999876655543 333344433 34444532 333456789999987652
Q ss_pred cccccChHHHHHHHHH--hcCCCeEEEEEe
Q 015704 85 INWTRDDGILLLEVNR--MLRAGGYFAWAA 112 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r--~LkpgG~li~~~ 112 (402)
. .......+..+.+ +|+++|.+++.+
T Consensus 122 ~--~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 R--RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp S--TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred c--cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2 1134566666654 699999999975
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3.9e-06 Score=75.06 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=50.9
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEE--EeccccC-C-----CCCCCCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMV--AAFATRR-L-----PYPSQAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~--~~~d~~~-l-----p~~~~sfDl 77 (402)
+..++||+|||+|.++..|+.+ .++++|+++..+..+. +.++..++...+ ...+... + ...+++||+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~-~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAK-KNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHH-HHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3468999999999887777654 8999999998887666 444455554432 2222111 1 123568999
Q ss_pred EEecCcccc
Q 015704 78 IHCSRCRIN 86 (402)
Q Consensus 78 I~s~~~~~~ 86 (402)
|+||..++.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999987664
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.17 E-value=1.5e-06 Score=80.54 Aligned_cols=121 Identities=10% Similarity=0.023 Sum_probs=68.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCc----ccccccCCCCC-CCC---CCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGL----IGVMHDWCEPF-DTY---PRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~----~~~~~~~~~~~-~~~---~~sfD~v 322 (402)
++|||+.||+|+|+.+++..|+. .|+.+| ++..++.+.+ .|+ +..+..-+..+ ..+ .+.||+|
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~----~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAM----ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBS----EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCCc----eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 35999999999999998887762 344444 3444544332 244 11222111110 111 2589999
Q ss_pred EEcc-ccccc-ccc----CCHHHHHHHhhhhccCCcEEEEEeC------hhhHHHHHHHHHhcCceEEEe
Q 015704 323 HAAG-LFSVE-SKR----CNMSTIMLEMDRMLRPGGHVYIRDS------IDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 323 ~~~~-~~~~~-~~~----~~~~~~l~e~~RvLrpgG~~~~~~~------~~~~~~~~~~~~~~~w~~~~~ 380 (402)
++.- .|..- ... .+...++....++|+|||.++++.. .+....+++.+.+-.+.+...
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 9851 01000 000 1234688888999999999999753 233455556555555665544
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.17 E-value=3e-06 Score=77.81 Aligned_cols=102 Identities=8% Similarity=-0.045 Sum_probs=69.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCC----CCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRL----PYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~l----p~~~~sfDlI~s 80 (402)
++.+|||++||+|.++..++.. .|+++|.+...+..+..+ +..++.. ..+...|+... ....+.||+|++
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N-~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKEN-QVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHH-HHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHh-hhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 4679999999999999888765 799999998887666633 3334443 34566664321 123578999998
Q ss_pred cCccccc---------ccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 81 SRCRINW---------TRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~---------~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
....+.- ..+...++..+.++|+|||.+++.+
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 6543321 1122456677889999999766654
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.17 E-value=1.4e-06 Score=76.22 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=65.5
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC-CC-----CCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR-LP-----YPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~-lp-----~~~~sfD 76 (402)
++++|||+|||+|..+..+++. +++++|+++.....+. +.....+.. ..+..++..+ +| +..++||
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~-~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQ-QMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH-HHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHH-HHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 5679999999999988888753 6899999987665555 333344543 2344554322 22 3457899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
+|+.... .... .....+.+..++|||||++++-
T Consensus 135 ~ifiD~~-~~~~-~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 135 MVFLDHW-KDRY-LPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEEECSC-GGGH-HHHHHHHHHTTCEEEEEEEEES
T ss_pred eeeeccc-cccc-ccHHHHHHHhCccCCCcEEEEe
Confidence 9996421 1111 1234577888999999988775
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.13 E-value=2e-07 Score=86.98 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=59.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH----hcCcccccccCCCC-------CCCCCCcccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY----DRGLIGVMHDWCEP-------FDTYPRTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~----~rg~~~~~~~~~~~-------~~~~~~sfD~v~~ 324 (402)
+|||++||+|+|+.+++..|+. .|+.+| ++.+++.+. ..|+-..++-.+.+ +..-..+||+|++
T Consensus 148 ~VLDl~~g~G~~si~~a~~ga~----~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 148 RVLDVFTYTGGFAIHAAIAGAD----EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp EEEETTCTTTHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred eeecccCcccchhhhhhhcCCc----EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 5999999999999999999862 455555 344444333 23552222111111 1111268999998
Q ss_pred cccccccccc------CCHHHHHHHhhhhccCCcEEEEEeC
Q 015704 325 AGLFSVESKR------CNMSTIMLEMDRMLRPGGHVYIRDS 359 (402)
Q Consensus 325 ~~~~~~~~~~------~~~~~~l~e~~RvLrpgG~~~~~~~ 359 (402)
.---...... .+...++....++|||||.++++..
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5211111000 1234678888999999999999753
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3.5e-06 Score=73.78 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=68.8
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccc-cCCC-----CCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT-RRLP-----YPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~-~~lp-----~~~~sfD 76 (402)
++++|||+|||+|..+..++.. .++++|.++.....++ +...+.+... .+..+++ +.++ ...++||
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~-~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR-PLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH-HHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHH-HHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 5789999999999988888764 7889999987665554 3333444433 2444442 2121 2357899
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|+.. +...+....+..+.+.|+|||.+++-.
T Consensus 138 ~ifiD----~dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 138 VAVVD----ADKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEEEC----SCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEe----CCHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 99964 233345778899999999999999973
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=3.4e-06 Score=76.16 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=66.7
Q ss_pred CCCeEEEECCccchhHHHHcc---CCceEEeCCccchHHHHHHHHHHcCCCcE--EEeccc-cCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLP---RNVITMSIAPKDVHENQIQFALERGAPAM--VAAFAT-RRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~---~~v~~vdi~~~~~~~a~~~~a~~~~~~~~--~~~~d~-~~lp~~~~sfDlI~s~~~ 83 (402)
+..+++|+|||+|..+..++. ..|+++|+++..+..+. +.++..+.... +...+. +.++...++||+|+||..
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~-~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHH-HHHHHcCCCceeEEeecccccccccccCcccEEEEccc
Confidence 346899999999977766653 27999999998886665 55666665443 334443 223333478999999866
Q ss_pred cccccc--------ChH----------HHHHH-HHHhcCCCeEEEEEe
Q 015704 84 RINWTR--------DDG----------ILLLE-VNRMLRAGGYFAWAA 112 (402)
Q Consensus 84 ~~~~~~--------d~~----------~~l~e-~~r~LkpgG~li~~~ 112 (402)
...-.. +|. .++++ +.+.|+|||++++..
T Consensus 189 YI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 189 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred ccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 443111 111 22222 567899999999985
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=2.5e-06 Score=77.00 Aligned_cols=132 Identities=18% Similarity=0.289 Sum_probs=82.0
Q ss_pred cceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccc-cCCCCCCCCCCcccEEEEc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMH-DWCEPFDTYPRTYDLLHAA 325 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~-~~~~~~~~~~~sfD~v~~~ 325 (402)
...|||+|||.|..+..++..+ + ..|+++| ++..++.|.+. |+ +...+ +|.+.++.....||+|+|.
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~-~---~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFS-D---AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS-S---CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccEEEEeeeeeehhhhhhhhcc-c---ceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 3469999999999999988663 2 2566666 55666555443 44 33333 3333322222589999996
Q ss_pred c-----------ccccccc------cCCHHHHHHH-hhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCC
Q 015704 326 G-----------LFSVESK------RCNMSTIMLE-MDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPH 387 (402)
Q Consensus 326 ~-----------~~~~~~~------~~~~~~~l~e-~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 387 (402)
- ...|-+. ...+ ..+++ +.+.|+|||++++--..+..+.++++++...| +++- .
T Consensus 187 PPYI~~~~~l~~~~~~EP~~AL~gg~dGl-~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~----~kDl---~ 258 (271)
T d1nv8a_ 187 PPYVKSSAHLPKDVLFEPPEALFGGEDGL-DFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDTVF----LKDS---A 258 (271)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSC-HHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTCEE----EECT---T
T ss_pred ccccCcccccceeeeeccccccccccchH-HHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHHhCCE----Eecc---C
Confidence 1 1112110 0011 22222 45789999999998666667888888887766 2332 2
Q ss_pred CceEEEEEEec
Q 015704 388 ASYRILTADKR 398 (402)
Q Consensus 388 ~~~~~l~~~k~ 398 (402)
+.+++++++|+
T Consensus 259 g~~R~~~~~k~ 269 (271)
T d1nv8a_ 259 GKYRFLLLNRR 269 (271)
T ss_dssp SSEEEEEEECC
T ss_pred CCcEEEEEEEc
Confidence 57999999985
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.07 E-value=4.4e-07 Score=75.02 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=58.1
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCCCC-CcccEEEEccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDTYP-RTYDLLHAAGL 327 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~~~-~sfD~v~~~~~ 327 (402)
+|||+|||+|.++-..+.+|+. +|+.+| ++.+++.+.+. |+ +..++.-+..+...+ +.||+|++.-=
T Consensus 17 ~vlDl~~GtG~~~iea~~rga~----~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 17 RVLDLFAGSGGLAIEAVSRGMS----AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp EEEEETCTTCHHHHHHHHTTCC----EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred eEEEcCCccCHHHHHHHHhCcc----eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 5999999999999988889862 667766 34444433222 33 333433222222234 79999998621
Q ss_pred cccccccCCHHHHHHHh--hhhccCCcEEEEEeC
Q 015704 328 FSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDS 359 (402)
Q Consensus 328 ~~~~~~~~~~~~~l~e~--~RvLrpgG~~~~~~~ 359 (402)
+.. .....+|..+ .++|+|||.+++..+
T Consensus 93 y~~----~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 93 YAK----ETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp SHH----HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hcc----chHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 110 1123444433 378999999999643
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=1.8e-06 Score=74.06 Aligned_cols=104 Identities=12% Similarity=0.099 Sum_probs=69.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-----p~~~~sfDlI~ 79 (402)
.++..+||++||+|..+..++++ .++++|.++.++..+.. .....+....+...+...+ .+..++||.|+
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~-~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl 100 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEE-KLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGIL 100 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHH-HTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHH-hhccccccccchhHHHhhHHHHHHHcCCCCcceee
Confidence 46789999999999998888764 78999999877755442 2222233344555544333 24457899998
Q ss_pred ecCcc--ccccc------ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCR--INWTR------DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~--~~~~~------d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..... .++.. .....+..+.++|+|||.+++.++
T Consensus 101 ~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 101 MDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp EECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred eccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 53221 22211 235788999999999999998863
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=4e-06 Score=73.38 Aligned_cols=132 Identities=19% Similarity=0.143 Sum_probs=78.2
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCCC--CCChhhHHhcCc---ccccccC-CCCCCC----C-CCcccE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG--FNTLPVIYDRGL---IGVMHDW-CEPFDT----Y-PRTYDL 321 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~--~~~~~~~~~rg~---~~~~~~~-~~~~~~----~-~~sfD~ 321 (402)
+.++||++|||+|.-+.+|+.. ..+..++.+...+. ....+.....|+ +..++.. .+.++. . +.+||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 4667999999999999888864 11223334433321 111233333354 2222211 111111 2 379999
Q ss_pred EEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh------------hhHHHHH----HHHHhcCceEEEeecCCC
Q 015704 322 LHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI------------DVMDELQ----EIGKAMGWHVTLRETAEG 385 (402)
Q Consensus 322 v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~------------~~~~~~~----~~~~~~~w~~~~~~~~~~ 385 (402)
|+... ++......+.++.+.|||||.+++.+-. .....++ .+.+.-+|....--..+
T Consensus 139 ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPigd- 211 (219)
T d2avda1 139 AVVDA------DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGD- 211 (219)
T ss_dssp EEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTT-
T ss_pred EEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecCC-
Confidence 99972 3445678899999999999999997521 1122333 34556778876654333
Q ss_pred CCCceEEEEEEe
Q 015704 386 PHASYRILTADK 397 (402)
Q Consensus 386 ~~~~~~~l~~~k 397 (402)
.+++|+|
T Consensus 212 -----Gl~ia~K 218 (219)
T d2avda1 212 -----GLTLAFK 218 (219)
T ss_dssp -----CEEEEEE
T ss_pred -----eeEEEEe
Confidence 3888887
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.00 E-value=5.1e-06 Score=77.21 Aligned_cols=103 Identities=10% Similarity=0.128 Sum_probs=68.2
Q ss_pred CCCCeEEEECCccchhHHHHcc----C-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP----R-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~----~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~ 79 (402)
.++.+|||.|||+|.+...+.. . .+.|+|+++..+..+..... ..+........+... ..+..+||+|+
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~-~~~~~~~~~~~d~~~-~~~~~~fD~vi 193 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLA-NLLVDPVDVVI 193 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTS-CCCCCCEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH-Hhhhhhhhhcccccc-ccccccccccc
Confidence 3456899999999988876642 1 57889998876655543322 334444444444222 23457899999
Q ss_pred ecCcccccccC-----------------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRD-----------------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d-----------------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
++..+.....+ ...++..+.+.|+|||.+++..+
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 98775332111 12468999999999999888754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.97 E-value=3.7e-06 Score=74.86 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=63.5
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
...+|||||||+|.++..++++ ++++.|+-.. + +.+. ......+...|... +.|. .|+++...+++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-----~~~~-~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh 150 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-----EDAP-SYPGVEHVGGDMFV-SIPK--ADAVFMKWICH 150 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-----TTCC-CCTTEEEEECCTTT-CCCC--CSCEECSSSST
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-----hhcc-cCCceEEecccccc-cCCC--cceEEEEEEee
Confidence 4578999999999999888875 6777787542 1 1111 11223355555422 3443 45666677878
Q ss_pred ccccC-hHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRD-DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d-~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.|.++ ...+|+++++.|+|||.+++..
T Consensus 151 ~~~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 151 DWSDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 88744 3689999999999999998874
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.96 E-value=6.3e-06 Score=69.96 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC--cEEEeccccC----CCCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP--AMVAAFATRR----LPYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~--~~~~~~d~~~----lp~~~~sfDlI~s 80 (402)
.+.+|||++||+|.++...+.+ .++.+|.+...+..+. +.+...+.. ..+...|+.. +.-...+||+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~-~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIK-ENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHH-HHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 5789999999999999877766 6889999987665544 333333332 2355555432 1223568999998
Q ss_pred cCcccccccChHHHHHHHHH--hcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNR--MLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r--~LkpgG~li~~~ 112 (402)
...+ . ..+....+..+.. +|+++|++++.+
T Consensus 120 DPPY-~-~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 120 DPPY-A-KQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp CCCG-G-GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhh-h-hhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 7652 2 2245677777754 699999999875
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.95 E-value=1.6e-06 Score=76.23 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=54.4
Q ss_pred eEEeccccchHHHHHHhhc----CCCceEEEeccCC-CCCChhhHHhc---------Cc--ccccccCCCCCCCCC--Cc
Q 015704 257 NVLDMRAGFGGFAAALIEQ----KFDCWVMNVVPVS-GFNTLPVIYDR---------GL--IGVMHDWCEPFDTYP--RT 318 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~----~~~~~~~~v~~~~-~~~~~~~~~~r---------g~--~~~~~~~~~~~~~~~--~s 318 (402)
+|||+|||+|.+++.|+.. |+. ....|..+| .+..+..+.++ ++ +..++.-... .+| ..
T Consensus 83 ~VLeIGtGsGY~ta~la~l~g~~g~~-~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~--~~~~~~~ 159 (223)
T d1r18a_ 83 RILDVGSGSGYLTACFYRYIKAKGVD-ADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK--GYPPNAP 159 (223)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHSCCC-TTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG--CCGGGCS
T ss_pred eEEEecCCCCHHHHHHHHHhhhccCC-cccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc--ccccccc
Confidence 5999999999999888765 110 001244444 23344444322 11 3333322211 233 68
Q ss_pred ccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 319 YDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 319 fD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
||.|++...+.+.++ .+.+.|||||.+++-
T Consensus 160 fD~Iiv~~a~~~~p~---------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 160 YNAIHVGAAAPDTPT---------ELINQLASGGRLIVP 189 (223)
T ss_dssp EEEEEECSCBSSCCH---------HHHHTEEEEEEEEEE
T ss_pred eeeEEEEeechhchH---------HHHHhcCCCcEEEEE
Confidence 999999988877652 356899999999985
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.93 E-value=3.9e-06 Score=73.22 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=60.1
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhc-CCCceEEEeccCCC-CCChhhHHh----cCc--ccccccCCCCCCC
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG-FNTLPVIYD----RGL--IGVMHDWCEPFDT 314 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~-~~~~~~~~~----rg~--~~~~~~~~~~~~~ 314 (402)
...+.+.+..+. +|||+|||+|..++-|+.. |. .|+.++. +..++.+.+ .|+ +..++.-. ...
T Consensus 69 ~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~-----~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~--~~g 139 (215)
T d1jg1a_ 69 IMLEIANLKPGM--NILEVGTGSGWNAALISEIVKT-----DVYTIERIPELVEFAKRNLERAGVKNVHVILGDG--SKG 139 (215)
T ss_dssp HHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCS-----CEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GGC
T ss_pred HHHHhhccCccc--eEEEecCCCChhHHHHHHhhCc-----eeEEEeccHHHHHHHHHHHHHcCCceeEEEECcc--ccC
Confidence 344455555553 4999999999999998876 43 2334432 233333332 344 33333221 122
Q ss_pred CC--CcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 315 YP--RTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 315 ~~--~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+| ..||.|++.....+.++ . +..-|||||.+++-
T Consensus 140 ~~~~~pfD~Iiv~~a~~~ip~-----~----l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 140 FPPKAPYDVIIVTAGAPKIPE-----P----LIEQLKIGGKLIIP 175 (215)
T ss_dssp CGGGCCEEEEEECSBBSSCCH-----H----HHHTEEEEEEEEEE
T ss_pred CcccCcceeEEeecccccCCH-----H----HHHhcCCCCEEEEE
Confidence 34 68999999988887663 2 34569999999984
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.92 E-value=8.3e-06 Score=73.88 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=71.0
Q ss_pred CCCCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHH--------H--cCCCcEEEeccccCCCCCCCC
Q 015704 8 IRLLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFAL--------E--RGAPAMVAAFATRRLPYPSQA 74 (402)
Q Consensus 8 ~~~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~--------~--~~~~~~~~~~d~~~lp~~~~s 74 (402)
..++++||.+|+|.|..+..+++. +++.+|+++..+..+..-+.. . ......+...|....--.+++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 356789999999999999888765 577788877555333211100 0 011223455553222113578
Q ss_pred eeEEEecCcccccccC----hHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHHHHHH
Q 015704 75 FDLIHCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEHWKEM 129 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~~~~~ 129 (402)
||+|++-. ....... -..+++.+.+.|+|||.++............+....+.+
T Consensus 150 yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl 207 (276)
T d1mjfa_ 150 FDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEM 207 (276)
T ss_dssp EEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHH
T ss_pred CCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHH
Confidence 99999642 2332211 157899999999999999986422222333344444433
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.90 E-value=1.2e-06 Score=73.93 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=56.3
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh----cCcccccc-cCCCCC---CCCC-CcccEEEEcc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD----RGLIGVMH-DWCEPF---DTYP-RTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~----rg~~~~~~-~~~~~~---~~~~-~sfD~v~~~~ 326 (402)
+|||+|||+|.++...+++|+ .++.+| ++.+++.+.+ -|+-..++ ..+..+ ...+ .+||+|++.-
T Consensus 44 ~vLDl~~G~G~~~i~a~~~ga-----~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 44 RFLDPFAGSGAVGLEAASEGW-----EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTC-----EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEeccccchhhhhhhhccc-----hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 599999999999999999997 445556 4555544432 24411111 111111 1123 6899999852
Q ss_pred ccccccccCCHHHHHHHh--hhhccCCcEEEEEeCh
Q 015704 327 LFSVESKRCNMSTIMLEM--DRMLRPGGHVYIRDSI 360 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~--~RvLrpgG~~~~~~~~ 360 (402)
=+. -+....+.++ ..+|+|||.+++..+.
T Consensus 119 PY~-----~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 119 PYA-----MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CTT-----SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred ccc-----cCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 111 1223445554 3589999999997543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.89 E-value=5.4e-06 Score=73.80 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred CCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCccc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
...+|||||||+|.++..++++ +++..|+-. .++.+.. .....+..+|... +.+ .+|++++..++|
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~------vi~~~~~-~~rv~~~~gD~f~-~~p--~aD~~~l~~vLH 149 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ------VVENLSG-SNNLTYVGGDMFT-SIP--NADAVLLKYILH 149 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH------HHTTCCC-BTTEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH------HHHhCcc-cCceEEEecCccc-CCC--CCcEEEEEeecc
Confidence 3468999999999999888765 566667632 1111111 1123455566543 323 579999999989
Q ss_pred ccccCh-HHHHHHHHHhcCCC---eEEEEEe
Q 015704 86 NWTRDD-GILLLEVNRMLRAG---GYFAWAA 112 (402)
Q Consensus 86 ~~~~d~-~~~l~e~~r~Lkpg---G~li~~~ 112 (402)
+|.++. .++|+++++.|+|| |.+++..
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 998543 68999999999998 6677764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.87 E-value=1.4e-06 Score=76.19 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=57.3
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCCCCCChh----hHHhcCc---ccccccCC-CCCCC----CC-Ccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSGFNTLP----VIYDRGL---IGVMHDWC-EPFDT----YP-RTY 319 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~~~~~~----~~~~rg~---~~~~~~~~-~~~~~----~~-~sf 319 (402)
+.++||++|||+|..+..|++. +.+..+..+.. .+.+.+ .....|+ +..+...+ +.++. ++ .+|
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~--~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEM--NPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 133 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEES--CHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEec--cHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence 4567999999999999999864 11123333222 223333 3334465 33333221 11222 44 689
Q ss_pred cEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 320 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 320 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|+|+... .++.......+.|..|+|||||.+++.|
T Consensus 134 D~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 134 DMVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EEEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEESC
T ss_pred ceeeecc----cccccccHHHHHHHhCccCCCcEEEEeC
Confidence 9999873 2221112346888899999999877654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.85 E-value=2.7e-05 Score=67.02 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=66.9
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCCCcccEEEEcccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYPRTYDLLHAAGLFSV 330 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~~sfD~v~~~~~~~~ 330 (402)
+|||+|||+|.++..++.+|+. .|+++| ++.++..+.+. ++ ...+. .+...++..||+|++.-=+..
T Consensus 49 ~vLDlg~GtG~l~i~a~~~g~~----~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~---~d~~~~~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 49 VVADLGAGTGVLSYGALLLGAK----EVICVEVDKEAVDVLIENLGEFKGKFKVFI---GDVSEFNSRVDIVIMNPPFGS 121 (201)
T ss_dssp EEEEETCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHTGGGTTSEEEEE---SCGGGCCCCCSEEEECCCCSS
T ss_pred EEEECcCcchHHHHHHHHcCCC----EEEEEcCcHHHHHHHHHHHHHcCCCceEEE---CchhhhCCcCcEEEEcCcccc
Confidence 5999999999999998888852 455665 45556555443 22 12221 222445678999999855543
Q ss_pred ccccCCHHHHHHHhhhhccCCcEEEEE--eChhhHHHHHHHHHhcCceEEEe
Q 015704 331 ESKRCNMSTIMLEMDRMLRPGGHVYIR--DSIDVMDELQEIGKAMGWHVTLR 380 (402)
Q Consensus 331 ~~~~~~~~~~l~e~~RvLrpgG~~~~~--~~~~~~~~~~~~~~~~~w~~~~~ 380 (402)
.....+...+ .+.+.+++.+... ......+-++.+.....|.+...
T Consensus 122 ~~~~~d~~~l----~~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 122 QRKHADRPFL----LKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp SSTTTTHHHH----HHHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred ccccccHHHH----HHHHhhcccchhcccchHHHHHHHHHHHhhcCceEEEE
Confidence 3322232222 2334445544333 34455566777888888876543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.80 E-value=1.4e-05 Score=70.07 Aligned_cols=97 Identities=10% Similarity=0.059 Sum_probs=67.3
Q ss_pred CCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCc--EEEeccc-cCCC------CCCCCe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPA--MVAAFAT-RRLP------YPSQAF 75 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~--~~~~~d~-~~lp------~~~~sf 75 (402)
++++|||+|+++|.-+..++.. .++.+|.++.....+. +...+.+... .+..++. +.++ ...++|
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~-~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL-PVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH-HHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 5789999999999888777632 7889999987665554 3333445433 2444442 1222 135689
Q ss_pred eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 76 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
|+|+.- ++.......+..+.++|+|||.+++-
T Consensus 138 D~iFiD----a~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 138 DFIFVD----ADKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp SEEEEC----SCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred eEEEec----cchhhhHHHHHHHHhhcCCCcEEEEc
Confidence 999953 23345678899999999999999997
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.80 E-value=1e-05 Score=69.33 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=44.6
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-ccccccCCCCCCCCCCcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-IGVMHDWCEPFDTYPRTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-~~~~~~~~~~~~~~~~sfD~v~~~~~~ 328 (402)
+|||+|||+|.++-.++.+|+. +|+.+| ++.+++.+.+..- +..+. .++..+++.||+|++.--|
T Consensus 51 ~VLDlGcGtG~l~i~a~~~ga~----~V~~vDid~~a~~~ar~N~~~~~~~~---~D~~~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 51 SVIDAGTGNGILACGSYLLGAE----SVTAFDIDPDAIETAKRNCGGVNFMV---ADVSEISGKYDTWIMNPPF 117 (197)
T ss_dssp EEEEETCTTCHHHHHHHHTTBS----EEEEEESCHHHHHHHHHHCTTSEEEE---CCGGGCCCCEEEEEECCCC
T ss_pred EEEEeCCCCcHHHHHHHHcCCC----cccccccCHHHHHHHHHccccccEEE---EehhhcCCcceEEEeCccc
Confidence 5999999999999888888752 466666 4566776655422 23332 2334467899999997443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.78 E-value=4.2e-05 Score=69.61 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=66.9
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc----CCCcEEEeccc-cCCCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFAT-RRLPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~~d~-~~lp~~~~sfDlI~ 79 (402)
.++++||-||.|.|..+..+++. .++.+|+++..+..+..-+.... .....+...|. +-+.-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 56789999999999999988865 57888998866654432221111 12223444442 22333457899999
Q ss_pred ecCcccccccC-----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRD-----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d-----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+-. ....... -..+++.+.+.|+|||.++..+.
T Consensus 168 ~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 168 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 642 2322111 26899999999999999999753
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=1.8e-05 Score=66.94 Aligned_cols=139 Identities=12% Similarity=0.110 Sum_probs=70.0
Q ss_pred ceEEeccccchHHHHHHhhcCC---CceEEEeccCCCCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccccc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKF---DCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVE 331 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~ 331 (402)
.+|||+||++|+|..++.++.. .|..+++.|.+.-+... .-.|-+............+. ..||+|.|.....-.
T Consensus 24 ~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~--~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~s 101 (180)
T d1ej0a_ 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVD--FLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS 101 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEE--EEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred CeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCce--EeecccccchhhhhhhhhccCcceeEEEecccchhc
Confidence 4699999999999999887521 13444444443211111 11111111000000000123 579999998665432
Q ss_pred ccc--------CCHHHHHHHhhhhccCCcEEEEE--eChhhHHHHHHHHHhcCceEEEeecC-CCCCCceEEEEEEe
Q 015704 332 SKR--------CNMSTIMLEMDRMLRPGGHVYIR--DSIDVMDELQEIGKAMGWHVTLRETA-EGPHASYRILTADK 397 (402)
Q Consensus 332 ~~~--------~~~~~~l~e~~RvLrpgG~~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~l~~~k 397 (402)
.+. ......|.=..++|||||.|++. +..+.. .+...++..=-++...+.. .-+.-.|.+++|+.
T Consensus 102 g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~-~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 102 GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFD-EYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHH-HHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHH-HHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence 211 01124444556999999999998 333222 2333333222222332221 12445799999975
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.75 E-value=5.9e-06 Score=75.79 Aligned_cols=118 Identities=15% Similarity=0.111 Sum_probs=66.7
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc----ccccccCCCCCC----CCCCcccEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL----IGVMHDWCEPFD----TYPRTYDLL 322 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~----~~~~~~~~~~~~----~~~~sfD~v 322 (402)
++|||+.||+|+|+.+++..|+ .|+.+| +..+++.|.+. |+ +..+++-+..+. ...+.||+|
T Consensus 134 ~rVLdlf~~tG~~sl~aa~~GA-----~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAAAGA-----EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC-----EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CeEEEecCCCcHHHHHHHhCCC-----eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 4699999999999999999997 556666 45566555432 43 222221110000 012689999
Q ss_pred EEccc-ccc------ccccCCHHHHHHHhhhhccCCcEEEEEeC-------hhhHHHHHHHHHhcCceEE
Q 015704 323 HAAGL-FSV------ESKRCNMSTIMLEMDRMLRPGGHVYIRDS-------IDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 323 ~~~~~-~~~------~~~~~~~~~~l~e~~RvLrpgG~~~~~~~-------~~~~~~~~~~~~~~~w~~~ 378 (402)
++.-= |.. ..-+.....++..+.++|+|||.+++... ......++..+..-...+.
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 98310 110 00001123556677889999997665421 2233445555555566654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.70 E-value=3.3e-05 Score=71.05 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=66.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc-----CCCcEEEeccccC-CCCCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER-----GAPAMVAAFATRR-LPYPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~-----~~~~~~~~~d~~~-lp~~~~sfDlI 78 (402)
..+++||.||.|.|..+..+++. +++.+|+++..+..+...+.... .....+...|... +.-.+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 46789999999999999888754 67888888866544432221111 1123344555322 22235789999
Q ss_pred EecCcccccccC-------hHHHHHHHHHhcCCCeEEEEEe
Q 015704 79 HCSRCRINWTRD-------DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 79 ~s~~~~~~~~~d-------~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++-. ...+..+ -..+++.+.+.|+|||.++...
T Consensus 156 i~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9642 2222211 1578999999999999999864
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.70 E-value=8e-06 Score=69.87 Aligned_cols=121 Identities=16% Similarity=0.173 Sum_probs=77.9
Q ss_pred hcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc-----ccccccCCCCC----CCCC
Q 015704 247 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL-----IGVMHDWCEPF----DTYP 316 (402)
Q Consensus 247 ~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~-----~~~~~~~~~~~----~~~~ 316 (402)
.+....+. .+||++||+|+++.+++++..+ ..|.++| .+.+++.+.++.- +..++.....+ ..++
T Consensus 18 ~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~---~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 18 FLKPEDEK--IILDCTVGEGGHSRAILEHCPG---CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHCCCTTC--EEEETTCTTSHHHHHHHHHCTT---CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTT
T ss_pred hhCCCCCC--EEEEecCCCcHHHHHHHhcCCC---CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcC
Confidence 33444454 4999999999999999887322 3677777 5778888877532 44555543332 2355
Q ss_pred -CcccEEEEcccccc--cc----ccCCHHHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHh
Q 015704 317 -RTYDLLHAAGLFSV--ES----KRCNMSTIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKA 372 (402)
Q Consensus 317 -~sfD~v~~~~~~~~--~~----~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~ 372 (402)
++||.|....-++- +. .-......|.++.++|+|||.+++-.-... ...++.+++.
T Consensus 93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp CSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 79999987644322 11 111234889999999999999988754332 2345555554
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.70 E-value=8.6e-05 Score=67.38 Aligned_cols=104 Identities=14% Similarity=0.064 Sum_probs=67.7
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHc----CCCcEEEeccc-cCCC-CCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALER----GAPAMVAAFAT-RRLP-YPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~----~~~~~~~~~d~-~~lp-~~~~sfDlI 78 (402)
.++++||-+|-|.|..+..+.+. .++.+|+++..+..+..-+.... .....+...|. +.+. .++++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 46789999999999999988875 57888888866544432111111 22233444442 2221 235689999
Q ss_pred EecCcccccccC----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.- +....... -..+++.+++.|+|||.++....
T Consensus 159 i~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 159 IVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 964 32222211 16799999999999999999853
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.65 E-value=8.5e-05 Score=66.88 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=67.8
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcC----CCcEEEecccc-CCCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG----APAMVAAFATR-RLPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~----~~~~~~~~d~~-~lp~~~~sfDlI~ 79 (402)
.++++||-+|.|.|..+..+.+. .++.+|+++..+..+..-+....+ ....+...|.. -+.-.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 46789999999999999988875 678888888666444322211111 12234444422 1223457899999
Q ss_pred ecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.-. ....... -..+++.+.+.|+|||.++...
T Consensus 154 ~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 642 2322211 2688999999999999999874
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.63 E-value=6.9e-05 Score=64.73 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=62.4
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||.|||+|.++..+.++ .+.++|+++..... .........+..... ....||+|+++..
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~~-~~~~fd~ii~npP 87 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLWE-PGEAFDLILGNPP 87 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGCC-CSSCEEEEEECCC
T ss_pred CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhccc-cccccceecccCc
Confidence 35679999999999988766542 58899998754311 112334444433322 3478999999866
Q ss_pred cccccc---------------------------C-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTR---------------------------D-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~---------------------------d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...... + ...++..+.+.|+|||++++.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 88 YGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 432110 0 12557888999999999998864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=8.9e-05 Score=67.08 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=65.5
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHH----cCCCcEEEeccc-cCCCCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALE----RGAPAMVAAFAT-RRLPYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~----~~~~~~~~~~d~-~~lp~~~~sfDlI~ 79 (402)
..+++||-+|.|.|..+..+.+. +++.+|+++..+..+..-+... ......+...|. .-+.-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 46789999999999999998875 6777888876654443222110 112233444452 22222456899999
Q ss_pred ecCcccccccC----hHHHHHHHHHhcCCCeEEEEEe
Q 015704 80 CSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 80 s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+- +....... -..+++.+.+.|+|||.+++.+
T Consensus 157 ~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EE-CC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred Ec-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 64 22222211 1368999999999999999975
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.55 E-value=8.7e-05 Score=67.81 Aligned_cols=99 Identities=13% Similarity=0.013 Sum_probs=62.5
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcC---------CCcEEEeccc-cCCCCCCCC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERG---------APAMVAAFAT-RRLPYPSQA 74 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~---------~~~~~~~~d~-~~lp~~~~s 74 (402)
..+++||-+|.|.|..+..+++. .++.+|+++..+ +.+++.. ....+...|. .-+.-..++
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv-----~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~ 179 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVI-----DVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNE 179 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHH-----HHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTC
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHH-----HHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCC
Confidence 56789999999999999999875 577788877554 3333321 1122344442 112223578
Q ss_pred eeEEEecCcccccccC----hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 75 FDLIHCSRCRINWTRD----DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d----~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
||+|++-. ....... -..+++.+.+.|+|||.++..+.
T Consensus 180 yDvII~D~-~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 180 FDVIITDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp EEEEEECC-C-------------HHHHHHHHEEEEEEEEEECC
T ss_pred CCEEEEcC-CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 99999643 2222111 15789999999999999999853
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.00022 Score=61.21 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=64.1
Q ss_pred CCeEEEECCccchhHHHHc----cCCceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEecCccc
Q 015704 11 LRVVMDAGCGVASFGAYLL----PRNVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHCSRCRI 85 (402)
Q Consensus 11 ~~~VLDiGcG~G~~~~~L~----~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDlI~s~~~~~ 85 (402)
+.+|+|+|||.|.-+..++ +..++.+|.+..-.. ...+..++-++.+. +....++.+. ...+||+|+|-.+
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVR-FLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHH-HHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh--
Confidence 4689999999995444333 337888887764331 11233445566544 4555566654 3468999996432
Q ss_pred ccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 86 NWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 86 ~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
.+...++.-+.+.++++|.+++--
T Consensus 142 ---~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 ---ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 256789999999999999999884
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.00025 Score=60.91 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCC----CCCh-hhHHhcCc--cccc
Q 015704 233 ESKYWNEIIESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG----FNTL-PVIYDRGL--IGVM 305 (402)
Q Consensus 233 ~~~~w~~~~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~----~~~~-~~~~~rg~--~~~~ 305 (402)
..+.|.+++-.-......-.+ .+|+|+|+|-|-=|--||-...++ +++-+|+ -..+ +++.+=|+ +..+
T Consensus 46 ~~~~~~rHi~DSl~~~~~~~~--~~ilDiGsGaG~PGi~laI~~p~~---~~~Lves~~KK~~FL~~~~~~L~L~nv~v~ 120 (207)
T d1jsxa_ 46 PNEMLVRHILDSIVVAPYLQG--ERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPV 120 (207)
T ss_dssp --CHHHHHHHHHHHHGGGCCS--SEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEE
T ss_pred HHHHHHHHhcchHhhhhhhcC--CceeeeeccCCceeeehhhhcccc---eEEEEecchHHHHHHHHHHHHcCCcceeee
Confidence 344565554422223332222 269999999995444444332222 4444443 1222 33444466 5667
Q ss_pred ccCCCCCCCCCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEE
Q 015704 306 HDWCEPFDTYPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVT 378 (402)
Q Consensus 306 ~~~~~~~~~~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~ 378 (402)
|+..|.+.. ..+||+|.|.- .+.+..++.-..+.++|||.+++--.....+.++.+- -.|+..
T Consensus 121 ~~R~E~~~~-~~~fD~V~sRA-------~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~~ 183 (207)
T d1jsxa_ 121 QSRVEEFPS-EPPFDGVISRA-------FASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQVE 183 (207)
T ss_dssp ECCTTTSCC-CSCEEEEECSC-------SSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEEE
T ss_pred ccchhhhcc-ccccceehhhh-------hcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEEE
Confidence 777665431 25899998863 3446788888889999999999986654455554432 467654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.46 E-value=0.00064 Score=58.31 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=78.7
Q ss_pred HHHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-Cccc
Q 015704 243 SYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYD 320 (402)
Q Consensus 243 ~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD 320 (402)
...+.+....+ .+|||.+||+|+|...+.++.. ...++.++| .+..+..+... ..++.- .+...+ ..||
T Consensus 10 ~m~~l~~~~~~--~~IlDp~~G~G~fl~~~~~~~~--~~~~i~g~ei~~~~~~~~~~~---~~~~~~--~~~~~~~~~fd 80 (223)
T d2ih2a1 10 FMVSLAEAPRG--GRVLEPACAHGPFLRAFREAHG--TAYRFVGVEIDPKALDLPPWA---EGILAD--FLLWEPGEAFD 80 (223)
T ss_dssp HHHHHCCCCTT--CEEEEETCTTCHHHHHHHHHHC--SCSEEEEEESCTTTCCCCTTE---EEEESC--GGGCCCSSCEE
T ss_pred HHHHhcCCCCc--CEEEECCCchHHHHHHHHHhcc--ccceEEeeecCHHHHhhcccc---eeeeee--hhccccccccc
Confidence 44455554444 3699999999999988876521 111233333 22222221111 112211 112223 7999
Q ss_pred EEEEccccccccc-------------------------cCCH-HHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHH-
Q 015704 321 LLHAAGLFSVESK-------------------------RCNM-STIMLEMDRMLRPGGHVYIRDSI-----DVMDELQE- 368 (402)
Q Consensus 321 ~v~~~~~~~~~~~-------------------------~~~~-~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~- 368 (402)
+|++.--+..... ..++ ...+....+.|||||++++=-+. .....+++
T Consensus 81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~ 160 (223)
T d2ih2a1 81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREF 160 (223)
T ss_dssp EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHH
T ss_pred eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHH
Confidence 9999866643211 1111 24456778999999997665332 12345555
Q ss_pred HHHhcCceEEEeecCCC-CCCceEEEEEEec
Q 015704 369 IGKAMGWHVTLRETAEG-PHASYRILTADKR 398 (402)
Q Consensus 369 ~~~~~~w~~~~~~~~~~-~~~~~~~l~~~k~ 398 (402)
+++..+..+........ ...+-.+++.+|.
T Consensus 161 l~~~~~i~i~~~~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 161 LAREGKTSVYYLGEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp HHHHSEEEEEEEESCSTTCCCCEEEEEEESS
T ss_pred HHhcCCEEEEcchhcCCCCCCcEEEEEEEeC
Confidence 45565556555544332 3455677777763
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=0.00025 Score=59.55 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=61.7
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sf 75 (402)
+++.+|||+||+.|.+++.+.+. .++++|+.+... -....+...|..... ...+.|
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~-----------i~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----------IVGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----------CTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccc-----------cCCceEeecccccchhhhhhhhhccCcce
Confidence 46789999999999999987753 588888876421 112233444432211 234679
Q ss_pred eEEEecCcccccccCh-----------HHHHHHHHHhcCCCeEEEEEeCC
Q 015704 76 DLIHCSRCRINWTRDD-----------GILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~-----------~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
|+|+|-.+ .....+. ...+.-+.++|++||.|++-.+.
T Consensus 90 DlVlSD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 90 QVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred eEEEeccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 99997432 3332221 24566678999999999999764
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.39 E-value=0.00051 Score=60.17 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHhccc-CCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCC----CCChh-hHHhcCc--cccc
Q 015704 234 SKYWNEIIESYVRALHW-KKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG----FNTLP-VIYDRGL--IGVM 305 (402)
Q Consensus 234 ~~~w~~~~~~y~~~~~~-~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~----~~~~~-~~~~rg~--~~~~ 305 (402)
.+.|.+++..-...+.. ......+|+|+|+|-|-=|--|+-...+. +++-+|+ -..++ ++.+=|| +..+
T Consensus 49 ~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~---~v~Lves~~KK~~FL~~v~~~L~L~n~~i~ 125 (239)
T d1xdza_ 49 KEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFC 125 (239)
T ss_dssp HHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCc---cceeecchHHHHHHHHHHHHHhCCCCcEEE
Confidence 45565555543333332 22334579999999995444444321121 4444543 22233 2333366 5567
Q ss_pred ccCCCCCCC---CCCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEeCh---hhHHHHHHHHHhcCceEEE
Q 015704 306 HDWCEPFDT---YPRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI---DVMDELQEIGKAMGWHVTL 379 (402)
Q Consensus 306 ~~~~~~~~~---~~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~---~~~~~~~~~~~~~~w~~~~ 379 (402)
|...|.+.. +..+||+|.|.- ...+..++.=....|+|||.+++--.. +.+...++.+..+.+++..
T Consensus 126 ~~R~E~~~~~~~~~~~~D~v~sRA-------va~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~ 198 (239)
T d1xdza_ 126 HDRAETFGQRKDVRESYDIVTARA-------VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELEN 198 (239)
T ss_dssp ESCHHHHTTCTTTTTCEEEEEEEC-------CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEE
T ss_pred eehhhhccccccccccceEEEEhh-------hhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEE
Confidence 777666543 336999999972 345678888889999999999997544 4455566667777877643
Q ss_pred ee--cCCCCCCceEEEEEEe
Q 015704 380 RE--TAEGPHASYRILTADK 397 (402)
Q Consensus 380 ~~--~~~~~~~~~~~l~~~k 397 (402)
.. +.....+.-.+++.+|
T Consensus 199 v~~~~lp~~~~~r~lv~i~K 218 (239)
T d1xdza_ 199 IHSFKLPIEESDRNIMVIRK 218 (239)
T ss_dssp EEEEECTTTCCEEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEEE
Confidence 22 2122223345666665
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=5.1e-05 Score=64.16 Aligned_cols=126 Identities=11% Similarity=0.176 Sum_probs=69.2
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHH---hc-Cc--ccccccCCCCCCCCC-CcccEEEEcccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIY---DR-GL--IGVMHDWCEPFDTYP-RTYDLLHAAGLF 328 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~---~r-g~--~~~~~~~~~~~~~~~-~sfD~v~~~~~~ 328 (402)
+|||++||+|.++-..+++|+. .|+.+| +...++.+. +. +. +..+..-...+..-. ..||+|++.-=+
T Consensus 46 ~vLDlfaGsG~~giealsrGa~----~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAA----GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS----EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred hhhhhhccccceeeeEEecCcc----eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 5999999999999999999973 455555 334443332 22 22 222221111111123 699999997322
Q ss_pred ccccccCCHHHHHHHhh--hhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEeecCCCCCCceEEEEEEec
Q 015704 329 SVESKRCNMSTIMLEMD--RMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRETAEGPHASYRILTADKR 398 (402)
Q Consensus 329 ~~~~~~~~~~~~l~e~~--RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~k~ 398 (402)
. ....+.++.-+. .+|+|+|.+++--+... .+... .-.|++..... +| .-++.+.+|.
T Consensus 122 ~----~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~--~~~~~--~~~~~i~k~k~-yG---~t~i~~~~k~ 181 (183)
T d2fpoa1 122 R----RGLLEETINLLEDNGWLADEALIYVESEVEN--GLPTV--PANWSLHREKV-AG---QVAYRLYQRE 181 (183)
T ss_dssp S----TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG--CSCCC--CTTEEEEEEEE-ET---TEEEEEEEEC
T ss_pred c----cchHHHHHHHHHHCCCCCCCeEEEEEecCcC--CcccC--CCCcEEEEEEE-eC---cEEEEEEEEc
Confidence 1 123345555444 47999999999532211 00001 12576654432 43 5667776663
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.36 E-value=0.00022 Score=60.04 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=64.8
Q ss_pred CCCeEEEECCccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCC---cEEEeccc---cCCCCCCCCeeEEEe
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAP---AMVAAFAT---RRLPYPSQAFDLIHC 80 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~---~~lp~~~~sfDlI~s 80 (402)
.+.+|||+.||||.++...+.+ .++.+|.+...+.... +.....+.. ..+...|. ........+||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik-~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLK-KNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHh-hHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 4579999999999999988877 6888888876553332 333333332 22333332 222334557999998
Q ss_pred cCcccccccChHHHHHHHHH--hcCCCeEEEEEe
Q 015704 81 SRCRINWTRDDGILLLEVNR--MLRAGGYFAWAA 112 (402)
Q Consensus 81 ~~~~~~~~~d~~~~l~e~~r--~LkpgG~li~~~ 112 (402)
-..+ .. ......+..+.. +|+++|++++.+
T Consensus 122 DPPY-~~-~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 122 DPPF-HF-NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCCS-SS-CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhH-hh-hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 7552 21 124567776654 799999999985
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.29 E-value=0.00035 Score=60.91 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=60.0
Q ss_pred CcceEEeccccchHHHHHHhhc-CCCceEEEeccCCC--CCChhhHHhcCc---ccccccCCCC-CCC------CCCccc
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVSG--FNTLPVIYDRGL---IGVMHDWCEP-FDT------YPRTYD 320 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~~--~~~~~~~~~rg~---~~~~~~~~~~-~~~------~~~sfD 320 (402)
+.++||++|+++|.-+..|++. +.+..++.+...+. ....+.....|+ +..++..+.. ++. .+++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 5667999999999888888743 11223333333321 111233333455 3333322211 111 135899
Q ss_pred EEEEccccccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 321 LLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 321 ~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|+... ++......+....+.|||||.+++.+
T Consensus 139 ~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEECS------CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred EEEecc------chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 999972 34456788999999999999999984
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.22 E-value=0.00038 Score=64.04 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=79.1
Q ss_pred cceEEeccccchHHHHHHhhc--CCCceEEEeccCC-CCCChhhHHhc----Cc-ccccccCCCCCCCCC-CcccEEEEc
Q 015704 255 LRNVLDMRAGFGGFAAALIEQ--KFDCWVMNVVPVS-GFNTLPVIYDR----GL-IGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 255 ~~~vLD~g~g~G~~~~~l~~~--~~~~~~~~v~~~~-~~~~~~~~~~r----g~-~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
-.+|||.+||+|+|..++.++ ...-...++.++| .+.++..|... +. ....+. ..+...+ ..||+|++.
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~--d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ--DGLANLLVDPVDVVISD 195 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEES--CTTSCCCCCCEEEEEEE
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcc--ccccccccccccccccC
Confidence 346999999999999887542 0011344666666 34455544332 22 222221 1223345 799999998
Q ss_pred cccccccc--------------cCCH-HHHHHHhhhhccCCcEEEEEeCh-----hhHHHHHHHHHhcCceEEEeecC--
Q 015704 326 GLFSVESK--------------RCNM-STIMLEMDRMLRPGGHVYIRDSI-----DVMDELQEIGKAMGWHVTLRETA-- 383 (402)
Q Consensus 326 ~~~~~~~~--------------~~~~-~~~l~e~~RvLrpgG~~~~~~~~-----~~~~~~~~~~~~~~w~~~~~~~~-- 383 (402)
-=+..... ..+. ...+..+.+.|+|||++++=-+. ..-..+++.+..-++-..+.+-.
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~lp~~ 275 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPET 275 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECCGG
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEECCcc
Confidence 54432110 0011 13577789999999986654332 23556777655555444333321
Q ss_pred --CCCCCceEEEEEEec
Q 015704 384 --EGPHASYRILTADKR 398 (402)
Q Consensus 384 --~~~~~~~~~l~~~k~ 398 (402)
.+...+--||+.+|+
T Consensus 276 ~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 276 LFKSEQARKSILILEKA 292 (328)
T ss_dssp GSCC-CCCEEEEEEEEC
T ss_pred ccCCCCCCeEEEEEECC
Confidence 124455678888774
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00071 Score=62.88 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccC----CCCCCCCeeEEEecC
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRR----LPYPSQAFDLIHCSR 82 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~----lp~~~~sfDlI~s~~ 82 (402)
++.+|||+-||+|.++..|++. .|+++|.++..+..+. +.++.++..+. +...+.+. .+....+||+|+...
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~-~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDP 290 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQ-QNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP 290 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred CCceEEEecccccccchhccccccEEEeccCcHHHHHHHH-HhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCC
Confidence 5679999999999999999876 8999999998776655 55666777654 45544332 223356799999754
Q ss_pred cccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 83 CRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 83 ~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.--- ....+..+.+. +|.-++++|..
T Consensus 291 PR~G----~~~~~~~l~~~-~~~~ivYVSCn 316 (358)
T d1uwva2 291 ARAG----AAGVMQQIIKL-EPIRIVYVSCN 316 (358)
T ss_dssp CTTC----CHHHHHHHHHH-CCSEEEEEESC
T ss_pred CCcc----HHHHHHHHHHc-CCCEEEEEeCC
Confidence 3211 23566666654 78888888864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.21 E-value=0.0002 Score=62.92 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=51.0
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHc---CCCcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALER---GAPAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~---~~~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
.++.+|||||||+|.++..|++. .++++|+++... ...+++ .....+..+|+..++++......|++|..
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~-----~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~vv~NLP 94 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLC-----KTTENKLVDHDNFQVLNKDILQFKFPKNQSYKIFGNIP 94 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHH-----HHHHHHTTTCCSEEEECCCGGGCCCCSSCCCEEEEECC
T ss_pred CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchH-----HHHHHHhhcccchhhhhhhhhhccccccccceeeeeeh
Confidence 46789999999999999999875 789999987544 233322 12345777788777776555456776644
Q ss_pred ccccc
Q 015704 84 RINWT 88 (402)
Q Consensus 84 ~~~~~ 88 (402)
++..
T Consensus 95 -YnIs 98 (235)
T d1qama_ 95 -YNIS 98 (235)
T ss_dssp -GGGH
T ss_pred -hhhh
Confidence 4443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.18 E-value=4.9e-05 Score=67.32 Aligned_cols=77 Identities=9% Similarity=0.088 Sum_probs=54.2
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcccc
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCRIN 86 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~~~ 86 (402)
.+..+|||||||+|.++..|++. .++++|++............ ......+..+|+.+++++...++.|++|.. ++
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~~~~~~~vv~NLP-Y~ 104 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRYKIVGNIP-YH 104 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEEEEEEECC-SS
T ss_pred CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhh--hccchhhhhhhhhccccccceeeeEeeeee-hh
Confidence 35679999999999999999865 78999998866532221110 111234667788888888888888887754 55
Q ss_pred cc
Q 015704 87 WT 88 (402)
Q Consensus 87 ~~ 88 (402)
..
T Consensus 105 Is 106 (245)
T d1yuba_ 105 LS 106 (245)
T ss_dssp SC
T ss_pred hh
Confidence 55
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.001 Score=58.69 Aligned_cols=122 Identities=13% Similarity=-0.006 Sum_probs=73.6
Q ss_pred CCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---cccccc-CCCCC----CCCC-C
Q 015704 252 KMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHD-WCEPF----DTYP-R 317 (402)
Q Consensus 252 ~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~-~~~~~----~~~~-~ 317 (402)
.....+|||+|||+|-++..|+.+- ...+++++| ++.+++.|.+. ++ +..+|. +...+ .... .
T Consensus 59 ~~~~~~~LDiGtGsg~I~~~l~~~~---~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (250)
T d2h00a1 59 KSTLRRGIDIGTGASCIYPLLGATL---NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEI 135 (250)
T ss_dssp GCCCCEEEEESCTTTTHHHHHHHHH---HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred ccccceEEEeCCCchHHHHHHHHhC---CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccC
Confidence 3456679999999999999998872 223677776 55666655443 33 323331 11111 1123 5
Q ss_pred cccEEEEcccccccccc--------------------------------CCHHHHHHHhhhhccCCcEEEEEe-ChhhHH
Q 015704 318 TYDLLHAAGLFSVESKR--------------------------------CNMSTIMLEMDRMLRPGGHVYIRD-SIDVMD 364 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~--------------------------------~~~~~~l~e~~RvLrpgG~~~~~~-~~~~~~ 364 (402)
+||+|.|.-=+-...+. ..+..++.|-.+.+++.|++..-- ..+...
T Consensus 136 ~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~ 215 (250)
T d2h00a1 136 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLA 215 (250)
T ss_dssp CBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHH
T ss_pred ceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHH
Confidence 89999996433211000 013456778888999999986433 234567
Q ss_pred HHHHHHHhcCce
Q 015704 365 ELQEIGKAMGWH 376 (402)
Q Consensus 365 ~~~~~~~~~~w~ 376 (402)
.+..++++....
T Consensus 216 ~i~~~L~~~g~~ 227 (250)
T d2h00a1 216 PLKEELRIQGVP 227 (250)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHHHcCCC
Confidence 777777777764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.15 E-value=0.00043 Score=63.37 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=66.5
Q ss_pred CCCCeEEEECCccchhHHHHcc---C--CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCCCCCeeEEEe--
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP---R--NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYPSQAFDLIHC-- 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~---~--~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~~~sfDlI~s-- 80 (402)
.++.+|||++||.|.=+.+++. . .+++.|.+..-+.... +..++.+..+. ....|...++.....||.|++
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~-~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETR-LNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHH-HHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 5678999999999975554532 2 5888998876554333 33444455544 344455555555788999996
Q ss_pred --cCc-cc------ccccCh----------HHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 --SRC-RI------NWTRDD----------GILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 --~~~-~~------~~~~d~----------~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.. .. .|.... .+.+....+.|||||.++.+|-
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 111 01 011011 2568889999999999999984
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.12 E-value=0.00037 Score=60.91 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=57.6
Q ss_pred CCCCeEEEECCccchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcE-EE-eccccCCCCCCCCeeEEEecC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAM-VA-AFATRRLPYPSQAFDLIHCSR 82 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~-~~d~~~lp~~~~sfDlI~s~~ 82 (402)
.+..+|+|+|||.|.++..++.+ .+.+.++-. +..+.-.. ....+.+.. +. ..++.. .+++..|+|+|-.
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~~-~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm 140 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPIP-MSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDI 140 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCCC-CCSTTGGGEEEECSCCTTT--SCCCCCSEEEECC
T ss_pred cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCcc-ccccccccccchhhhhHHh--cCCCcCCEEEeeC
Confidence 45568999999999999999866 345555532 11100000 000011111 11 112222 3467899999853
Q ss_pred cccccccCh-------HHHHHHHHHhcCCCeEEEEEeCC
Q 015704 83 CRINWTRDD-------GILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 83 ~~~~~~~d~-------~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
. .. ..++ -+++.-+.+.|+|||.|++-.+.
T Consensus 141 ~-es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 141 G-ES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp C-CC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred C-CC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 2 33 2222 25667778999999999998653
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.0015 Score=58.77 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=67.1
Q ss_pred CCCCeEEEECCccchhHHHHcc---C-CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--CCCCCCeeEEEe--
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP---R-NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--PYPSQAFDLIHC-- 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~---~-~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l--p~~~~sfDlI~s-- 80 (402)
.++.+|||+++|.|.=+..+++ . .+++.|++..-+.... +..+..+..+.....+.... ....+.||.|++
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~-~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh-hhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 4678999999999965555543 2 5889999987765443 55555666655444332221 123468999995
Q ss_pred --cCcc-c--------ccccC--------hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 --SRCR-I--------NWTRD--------DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 --~~~~-~--------~~~~d--------~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+..- + .+.+. ...+|..+.+.|||||.++.+|-
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 2110 1 11111 13678889999999999999973
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.05 E-value=0.0003 Score=64.33 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=76.7
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc------Cc-----ccccc-cCCCCCCCCCCccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR------GL-----IGVMH-DWCEPFDTYPRTYD 320 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r------g~-----~~~~~-~~~~~~~~~~~sfD 320 (402)
...++||.+|.|.|+.+..+.+... +.-+.++.+| +..++.+.+. +. +..++ +..+-+..-++.||
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD-~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDID-GELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESC-HHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCC-HHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence 3567899999999999999987741 2223333332 3444444332 11 22222 11111112347899
Q ss_pred EEEEccccccccc--cCC--HHHHHHHhhhhccCCcEEEEEe------ChhhHHHHHHHHHhcCceEEEeecCCCCC-Cc
Q 015704 321 LLHAAGLFSVESK--RCN--MSTIMLEMDRMLRPGGHVYIRD------SIDVMDELQEIGKAMGWHVTLRETAEGPH-AS 389 (402)
Q Consensus 321 ~v~~~~~~~~~~~--~~~--~~~~l~e~~RvLrpgG~~~~~~------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~ 389 (402)
+|+....=.+..+ ... -...+..+.|.|||||.++..- ..+....+.+.+++.=..+..-...-.+- ..
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~~~ 233 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLN 233 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcCCC
Confidence 9997531111110 000 0478899999999999999852 23455666666665555544432210010 12
Q ss_pred eEEEEEEec
Q 015704 390 YRILTADKR 398 (402)
Q Consensus 390 ~~~l~~~k~ 398 (402)
-.+++|.|.
T Consensus 234 w~f~~aS~~ 242 (312)
T d1uira_ 234 FGFLLASDA 242 (312)
T ss_dssp EEEEEEESS
T ss_pred CEeEEEeCC
Confidence 346677664
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.04 E-value=0.0019 Score=56.37 Aligned_cols=108 Identities=10% Similarity=0.076 Sum_probs=67.9
Q ss_pred CCCeEEEECCccchhHHHHc----cCCceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCC---CCCCeeEEEec
Q 015704 10 LLRVVMDAGCGVASFGAYLL----PRNVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPY---PSQAFDLIHCS 81 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~----~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~---~~~sfDlI~s~ 81 (402)
...+++|+|+|.|.-+..++ ...++-+|.+..-.. ......++-++.+. +....++.+.. ..++||+|+|-
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~-FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRIT-FLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHH-HHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHH-HHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 45699999999995444333 337777877653221 11123344566655 34444454432 23689999975
Q ss_pred CcccccccChHHHHHHHHHhcCCCeEEEEEeCCCCCChHHHHHH
Q 015704 82 RCRINWTRDDGILLLEVNRMLRAGGYFAWAAQPVYKHEEAQEEH 125 (402)
Q Consensus 82 ~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~~~~~~~el~~~ 125 (402)
.+ .....++.-+.+.+++||.+++-- +.....|+.++
T Consensus 149 Av-----a~l~~ll~~~~~~l~~~g~~i~~K--G~~~~~El~~a 185 (239)
T d1xdza_ 149 AV-----ARLSVLSELCLPLVKKNGLFVALK--AASAEEELNAG 185 (239)
T ss_dssp CC-----SCHHHHHHHHGGGEEEEEEEEEEE--CC-CHHHHHHH
T ss_pred hh-----hCHHHHHHHHhhhcccCCEEEEEC--CCChHHHHHHH
Confidence 32 267889999999999999998874 33455555544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.03 E-value=0.0013 Score=57.35 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=58.5
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCCC------CCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEccccc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG------FNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFS 329 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~------~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~ 329 (402)
.|+|+|||+|+++.++++++ .++.|.+.+. ..+....+..+++..- ....+-..+ ...|+|.|.-.-+
T Consensus 69 ~vvDlG~~pGgws~~~a~~~---~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~--~~~dv~~l~~~~~D~vlcDm~es 143 (257)
T d2p41a1 69 KVVDLGCGRGGWSYYCGGLK---NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQ--SGVDVFFIPPERCDTLLCDIGES 143 (257)
T ss_dssp EEEEETCTTSHHHHHHHTST---TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEE--CSCCTTTSCCCCCSEEEECCCCC
T ss_pred eEEEecCCCChHHHHHHhhc---CCCceeEEEecCccccCCccccccccccccch--hhhhHHhcCCCcCCEEEeeCCCC
Confidence 49999999999999999885 2334443331 0111111112222111 111222234 7899999985422
Q ss_pred cccccCCH-----HHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHH
Q 015704 330 VESKRCNM-----STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEI 369 (402)
Q Consensus 330 ~~~~~~~~-----~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~ 369 (402)
..++ .+ ..+|.=+.++|+|||.|++.- ..++++.++.+
T Consensus 144 -s~~~-~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~l 190 (257)
T d2p41a1 144 -SPNP-TVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEAL 190 (257)
T ss_dssp -CSSH-HHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHH
T ss_pred -CCCc-hhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHH
Confidence 2211 11 144555568999999999983 23455554444
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.98 E-value=0.00012 Score=61.85 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=56.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----Cc---ccccccCCCCCCC-C--C-CcccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GL---IGVMHDWCEPFDT-Y--P-RTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~---~~~~~~~~~~~~~-~--~-~sfD~v~~ 324 (402)
+|||+.||+|.++-..+++|+. .|+.+| +..+++.+.+. +. +..++..+..+.. + . ..||+|++
T Consensus 44 ~vLDlfaGsG~~g~ea~srGa~----~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 44 MALDLYSGSGGLAIEAVSRGMD----KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS----EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEcccccccccceeeecchh----HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 5999999999999999999973 455555 33444433221 33 2222221111111 1 2 48999998
Q ss_pred ccccccccccCCHHHHHHHhh--hhccCCcEEEEE
Q 015704 325 AGLFSVESKRCNMSTIMLEMD--RMLRPGGHVYIR 357 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~--RvLrpgG~~~~~ 357 (402)
.==+ +..+...+|..+. .+|+|+|++|+-
T Consensus 120 DPPY----~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 120 DPPY----AKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp CCCG----GGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chhh----hhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 6211 1224567777764 489999999985
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.0058 Score=56.42 Aligned_cols=114 Identities=21% Similarity=0.247 Sum_probs=73.6
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCc--ccccccCCCCCC-CCC---CcccEEEE
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGL--IGVMHDWCEPFD-TYP---RTYDLLHA 324 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~--~~~~~~~~~~~~-~~~---~sfD~v~~ 324 (402)
..|||+-||.|.|+..|++++. .|++++ ++..++ -+...|+ +..++...+... ..+ ..||+|+.
T Consensus 214 ~~vlDLycG~G~fsl~La~~~~-----~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil 288 (358)
T d1uwva2 214 DRVLDLFCGMGNFTLPLATQAA-----SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL 288 (358)
T ss_dssp CEEEEESCTTTTTHHHHHTTSS-----EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred ceEEEecccccccchhcccccc-----EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEe
Confidence 4599999999999999999987 344444 223332 3333355 344443333322 222 57999998
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceEEEee
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHVTLRE 381 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 381 (402)
. ++|.....++.++.+. +|.-.+++|=+.....+--..+.+-.|++....
T Consensus 289 D------PPR~G~~~~~~~l~~~-~~~~ivYVSCnp~TlaRDl~~l~~~gy~l~~i~ 338 (358)
T d1uwva2 289 D------PARAGAAGVMQQIIKL-EPIRIVYVSCNPATLARDSEALLKAGYTIARLA 338 (358)
T ss_dssp C------CCTTCCHHHHHHHHHH-CCSEEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred C------CCCccHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHCCCeEeEEE
Confidence 8 7777777888888774 899999999655554444444444568766543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.72 E-value=0.0015 Score=62.22 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=65.8
Q ss_pred CCCCeEEEECCccchhHHHHcc-----------------CCceEEeCCccchHHHHHHHHHHcCCC---cEEEeccccCC
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP-----------------RNVITMSIAPKDVHENQIQFALERGAP---AMVAAFATRRL 68 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~-----------------~~v~~vdi~~~~~~~a~~~~a~~~~~~---~~~~~~d~~~l 68 (402)
..+.+|+|.+||+|.+.....+ ..+.|.|+++....-+....... +.. ..+...|...
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~-g~~~~~~~i~~~d~l~- 238 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH-GIGTDRSPIVCEDSLE- 238 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT-TCCSSCCSEEECCTTT-
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhc-CCccccceeecCchhh-
Confidence 3567999999999988765533 24778898886665554443332 221 1233333222
Q ss_pred CCCCCCeeEEEecCccccccc---------------C-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 69 PYPSQAFDLIHCSRCRINWTR---------------D-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 69 p~~~~sfDlI~s~~~~~~~~~---------------d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..+...||+|+++..+-.-.. + ...++..+.+.|++||.+.+..+
T Consensus 239 ~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 239 KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 234568999999876522100 1 13589999999999999888864
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.50 E-value=0.0028 Score=52.93 Aligned_cols=100 Identities=24% Similarity=0.169 Sum_probs=65.8
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCCCc-EEEeccccCCC-----CCCCCeeEEEe
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGAPA-MVAAFATRRLP-----YPSQAFDLIHC 80 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~~~-~~~~~d~~~lp-----~~~~sfDlI~s 80 (402)
.++..++|..+|.|..+..+++. .|+|+|..+.++ ..+++..... .+.......+. +..+.+|.|+.
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai-----~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~ 91 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAV-----ARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILA 91 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHH-----HHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHH-----HHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEE
Confidence 57789999999999999888876 789999887654 3333332222 23333322221 23467999996
Q ss_pred cCcc--ccccc------ChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 81 SRCR--INWTR------DDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 81 ~~~~--~~~~~------d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
.... .|+.. .....|......|+|||.+++.++
T Consensus 92 DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 92 DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 3221 22211 123578888999999999999864
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.42 E-value=0.0031 Score=54.79 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=54.6
Q ss_pred CCCeEEEECCccchhHHHHc--------cCCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC----CCCCCeeE
Q 015704 10 LLRVVMDAGCGVASFGAYLL--------PRNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP----YPSQAFDL 77 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~--------~~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp----~~~~sfDl 77 (402)
++.+|||+|++.|.-+..++ ...++++|+.+..... .........+..+|..+.. +....+|+
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dl 154 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PASDMENITLHQGDCSDLTTFEHLREMAHPL 154 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CGGGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hhccccceeeeecccccHHHHHHHHhcCCCE
Confidence 57899999999996554433 2278999987643211 1111122334555432221 23456888
Q ss_pred EEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+.- ..|+.. ....-+ +..+.|++||++++..
T Consensus 155 IfID-~~H~~~-~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 155 IFID-NAHANT-FNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEEE-SSCSSH-HHHHHH-HHHHTCCTTCEEEECS
T ss_pred EEEc-CCcchH-HHHHHH-HHhcccCcCCEEEEEc
Confidence 8753 323322 222223 4668999999999973
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.40 E-value=0.0028 Score=56.63 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=58.0
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc-----Cc-----------ccccccCCCCCCCCC
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR-----GL-----------IGVMHDWCEPFDTYP 316 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r-----g~-----------~~~~~~~~~~~~~~~ 316 (402)
.+.++||-+|+|.|+.+..+.+.+. .-+.++.+| +..++++.+- +. +..+++-...+..=.
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~--~~v~~VEiD-~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~ 147 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEID-EDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 147 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESC-HHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCceEEEecCCchHHHHHHHHhCC--ceEEEecCC-HHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence 4567899999999999999887753 333444443 3444544321 00 112221110000003
Q ss_pred CcccEEEEccccccccccCC--HHHHHHHhhhhccCCcEEEEE
Q 015704 317 RTYDLLHAAGLFSVESKRCN--MSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~~~~~--~~~~l~e~~RvLrpgG~~~~~ 357 (402)
++||+|++... ........ =...+..+.|.|+|||.++..
T Consensus 148 ~~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 148 RGFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CCEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 68999997532 21110000 047899999999999999985
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.0095 Score=53.48 Aligned_cols=71 Identities=11% Similarity=0.048 Sum_probs=46.3
Q ss_pred CCCCeEEEECCccchhHHHHccC-----CceEEeCCccchHHHHHHHHHHcCCCcE-EEeccccCCCCC---CCCeeEEE
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR-----NVITMSIAPKDVHENQIQFALERGAPAM-VAAFATRRLPYP---SQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~-----~v~~vdi~~~~~~~a~~~~a~~~~~~~~-~~~~d~~~lp~~---~~sfDlI~ 79 (402)
.++.+|||++||.|.=+.++++. .++++|+++.-+... .+..++.+..+. +...|...++.. .+.||.|+
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l-~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASM-ATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHH-HHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 46789999999999766665532 588999987655333 345555666654 444454444322 25799999
Q ss_pred e
Q 015704 80 C 80 (402)
Q Consensus 80 s 80 (402)
+
T Consensus 172 ~ 172 (293)
T d2b9ea1 172 L 172 (293)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.91 E-value=0.0047 Score=55.96 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=74.2
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcC------c----cccccc-CCCCCCCCCCcccE
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRG------L----IGVMHD-WCEPFDTYPRTYDL 321 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg------~----~~~~~~-~~~~~~~~~~sfD~ 321 (402)
...++||-+|.|.|+.++.+.+.. ++..+.++.+| +..++.+.+-- + +..+++ -.+-+..-++.||+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID-~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv 182 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEID-EMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV 182 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSC-HHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEccc-HHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence 356689999999999999999875 23444444443 33444443310 0 111111 00001112478999
Q ss_pred EEEcccccccccc-CCHHHHHHHhhhhccCCcEEEEEeC-----hhhHHHHHHHHHhcCceEEEeecCCC--CCCceEEE
Q 015704 322 LHAAGLFSVESKR-CNMSTIMLEMDRMLRPGGHVYIRDS-----IDVMDELQEIGKAMGWHVTLRETAEG--PHASYRIL 393 (402)
Q Consensus 322 v~~~~~~~~~~~~-~~~~~~l~e~~RvLrpgG~~~~~~~-----~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~l 393 (402)
|++...-...... ---...+..+.|.|+|||.++..-. .+....+.+.+++.=..+.....-.. +.+.-.++
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~~vPtyp~G~w~f~ 262 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYL 262 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEE
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeeeccCCcCCccceee
Confidence 9986322211100 0013678899999999999999732 23344444445554444443322111 12344567
Q ss_pred EEEe
Q 015704 394 TADK 397 (402)
Q Consensus 394 ~~~k 397 (402)
+|.|
T Consensus 263 ~aSk 266 (312)
T d2b2ca1 263 ICAK 266 (312)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7765
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.85 E-value=0.0031 Score=56.69 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=61.0
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc----------Ccccccc-cCCCCCCCCC-Cccc
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR----------GLIGVMH-DWCEPFDTYP-RTYD 320 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r----------g~~~~~~-~~~~~~~~~~-~sfD 320 (402)
...++||=+|-|.|+.+..+.+.. ++..+.++.+| +..++.+.+- .-+..+. |..+-+...+ ++||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD-~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEID-KMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESC-HHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcc-cceeeEEecCC-HHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 456789999999999999998874 23444555554 2233333221 1111111 1111122344 6999
Q ss_pred EEEEcccc-----ccccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 321 LLHAAGLF-----SVESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 321 ~v~~~~~~-----~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+|+....= .++-. ...+..+.|.|+|||.++..-
T Consensus 157 vIi~D~~dp~~~~~~L~t----~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELFE----KPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEEECCCCTTSGGGGGGS----HHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhCC----HHHHHHHHHhcCCCcEEEEec
Confidence 99985221 11221 478999999999999999963
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=95.77 E-value=0.0067 Score=54.50 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=59.5
Q ss_pred CCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhcC------c----cccccc-CCCCCCCCCCcccE
Q 015704 253 MKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDRG------L----IGVMHD-WCEPFDTYPRTYDL 321 (402)
Q Consensus 253 ~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~rg------~----~~~~~~-~~~~~~~~~~sfD~ 321 (402)
...++||=+|.|.|+.+..+.+.. ++..+.++.+| +..++.+.+-- + +..+++ ..+-+...++.||+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEID-p~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 165 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVD-GLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV 165 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCC-HHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence 356789999999999999998874 23334444443 23344333211 1 112211 11111223478999
Q ss_pred EEEccccc------cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 322 LHAAGLFS------VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 322 v~~~~~~~------~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
|++...=. ++-. ...+..+.|.|+|||.++..-
T Consensus 166 Ii~D~~dp~~~~~~~L~t----~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 166 IIIDSTDPTAGQGGHLFT----EEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEEEC----------CCS----HHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCcCchhhhcc----HHHHHHHHhhcCCCcEEEEec
Confidence 99863211 2221 488999999999999999863
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.013 Score=52.38 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=65.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh----hHHhcCc--cccc-ccCCCCCCCCCCcccEEEE----
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP----VIYDRGL--IGVM-HDWCEPFDTYPRTYDLLHA---- 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~----~~~~rg~--~~~~-~~~~~~~~~~~~sfD~v~~---- 324 (402)
+|||+-||+|+=+.+|++.+.+. .|++.| +...+. ....-|+ +... ++....-...+..||.|.+
T Consensus 105 ~vLD~CAaPGgKt~~la~l~~~~---~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaPC 181 (284)
T d1sqga2 105 HILDLCAAPGGKTTHILEVAPEA---QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 181 (284)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTC---EEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred eeEeccCccccchhhhhhhhhhh---hhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEeccc
Confidence 59999999999999988775432 345555 233332 2222244 1111 1111000112368999997
Q ss_pred --ccccccccc------cCCH-------HHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHHh-cCceE
Q 015704 325 --AGLFSVESK------RCNM-------STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKA-MGWHV 377 (402)
Q Consensus 325 --~~~~~~~~~------~~~~-------~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~~-~~w~~ 377 (402)
.+++..-++ ..++ ..+|....+.|||||+++.+. +.+-.+.++.++++ -.|+.
T Consensus 182 Sg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~ 254 (284)
T d1sqga2 182 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAEL 254 (284)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEE
T ss_pred cccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEE
Confidence 333322110 0011 177888889999999999983 23334456666554 34443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0035 Score=61.28 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=61.6
Q ss_pred CCCCeEEEECCccchhHHHHcc----------------------CCceEEeCCccchHHHHHHHHHHcCCCcE------E
Q 015704 9 RLLRVVMDAGCGVASFGAYLLP----------------------RNVITMSIAPKDVHENQIQFALERGAPAM------V 60 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~----------------------~~v~~vdi~~~~~~~a~~~~a~~~~~~~~------~ 60 (402)
..+.+|+|..||+|.+.....+ ..+.|.|+++....-+...... ++.... .
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l-~~~~~~i~~~~~~ 241 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL-HDIEGNLDHGGAI 241 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT-TTCCCBGGGTBSE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh-hcccccccccchh
Confidence 3456999999999988754322 1467888887655444333322 122111 1
Q ss_pred EeccccCC-CCCCCCeeEEEecCcccccc------------cC-hHHHHHHHHHhcCCCeEEEEEeC
Q 015704 61 AAFATRRL-PYPSQAFDLIHCSRCRINWT------------RD-DGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 61 ~~~d~~~l-p~~~~sfDlI~s~~~~~~~~------------~d-~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
...+.... ......||+|++|..+-.-. .+ .-.++..+.+.|+|||.+.+..+
T Consensus 242 ~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 242 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 11111110 12346799999987642211 01 13589999999999999998864
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=95.66 E-value=0.0036 Score=52.26 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=78.2
Q ss_pred hcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCc--ccccccCCCCCCC----CC-Cc
Q 015704 247 ALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGL--IGVMHDWCEPFDT----YP-RT 318 (402)
Q Consensus 247 ~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~--~~~~~~~~~~~~~----~~-~s 318 (402)
.+.+..|.+ ++|..||.||.+..|.+++. .|.++| .+.++..+..+-. +..+|.....+.. +. ..
T Consensus 13 ~l~~~~g~~--~vD~T~G~GGhs~~iL~~~~-----~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 13 LLAVRPGGV--YVDATLGGAGHARGILERGG-----RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER 85 (182)
T ss_dssp HHTCCTTCE--EEETTCTTSHHHHHHHHTTC-----EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred hcCCCCCCE--EEEeCCCCcHHHHHHhcccC-----cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence 344555554 99999999999999999865 556665 3555666554322 4556655444332 34 67
Q ss_pred ccEEEEccccccc--cccC----CHHHHHHHhhhhccCCcEEEEEeChhh-HHHHHHHHHhcCceEEE
Q 015704 319 YDLLHAAGLFSVE--SKRC----NMSTIMLEMDRMLRPGGHVYIRDSIDV-MDELQEIGKAMGWHVTL 379 (402)
Q Consensus 319 fD~v~~~~~~~~~--~~~~----~~~~~l~e~~RvLrpgG~~~~~~~~~~-~~~~~~~~~~~~w~~~~ 379 (402)
+|.|....-++-. .+.. .....|.....+|+|||.+++-.-... .+.++.+++.-.++...
T Consensus 86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k~i~ 153 (182)
T d1wg8a2 86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVLT 153 (182)
T ss_dssp EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEESC
T ss_pred cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccceecc
Confidence 9999886544432 2110 112456666899999999998754322 34566666665555443
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.0062 Score=54.51 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=58.5
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc-----C-----cccccccC-CCCCCCCCCcccEE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR-----G-----LIGVMHDW-CEPFDTYPRTYDLL 322 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r-----g-----~~~~~~~~-~~~~~~~~~sfD~v 322 (402)
.-++||-+|.|.|+.+..+.+.. ++..+.++.+| +..++.+.+- + -+..+++- .+-+..-+++||+|
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD-~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEID-EDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESC-HHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCC-HHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 45779999999999999999874 23444444444 3344444321 1 12222211 11111234799999
Q ss_pred EEccccc-----cccccCCHHHHHHHhhhhccCCcEEEEEe
Q 015704 323 HAAGLFS-----VESKRCNMSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 323 ~~~~~~~-----~~~~~~~~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
++...=. ++-. ...+..+.|.|+|||.+++.-
T Consensus 156 i~D~~~p~~~~~~L~t----~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 156 ITDSSDPMGPAESLFK----ESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEECC---------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCCCCCCccccccc----HHHHHHHHHhcCCCCeEEEec
Confidence 9873211 1211 267899999999999999963
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0073 Score=53.80 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=46.1
Q ss_pred CCCeEEEECCccchhHHHHccC--CceEEeCCccchHHHHHHHHHHcCC--CcEEEeccccCCCCCCCCeeEEEecCc
Q 015704 10 LLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDVHENQIQFALERGA--PAMVAAFATRRLPYPSQAFDLIHCSRC 83 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~~~a~~~~a~~~~~--~~~~~~~d~~~lp~~~~sfDlI~s~~~ 83 (402)
++..|||||+|+|.+|..|++. .++++++++.........+. .... ...+..+|+...+++ .++.|++|..
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~-~~~~~~~~~~i~~D~l~~~~~--~~~~vV~NLP 95 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQ-GTPVASKLQVLVGDVLKTDLP--FFDTCVANLP 95 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHT-TSTTGGGEEEEESCTTTSCCC--CCSEEEEECC
T ss_pred CCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHh-hhccccchhhhHHHHhhhhhh--hhhhhhcchH
Confidence 5679999999999999999875 89999998755433321111 1111 233556666555443 4567887744
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=95.27 E-value=0.0036 Score=54.86 Aligned_cols=64 Identities=13% Similarity=0.241 Sum_probs=41.1
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc----CcccccccCCCCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR----GLIGVMHDWCEPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r----g~~~~~~~~~~~~~~~~-~sfD~v~~~ 325 (402)
.+||+||||+|.++..|+++++ .|++++ .+.+++...++ .-+..+|.-...+ +++ ..++.|++.
T Consensus 31 d~VLEIGpG~G~LT~~L~~~~~-----~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~-~~~~~~~~~vv~N 100 (245)
T d1yuba_ 31 DTVYEIGTGKGHLTTKLAKISK-----QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF-QFPNKQRYKIVGN 100 (245)
T ss_dssp EEEEECSCCCSSCSHHHHHHSS-----EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT-TCCCSSEEEEEEE
T ss_pred CeEEEECCCccHHHHHHHhhcC-----ceeEeeecccchhhhhhhhhhccchhhhhhhhhcc-ccccceeeeEeee
Confidence 4599999999999999999987 566665 34555544444 2255555433332 244 466656655
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=94.89 E-value=0.03 Score=49.54 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=59.5
Q ss_pred CcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCCChhhHHhc-----Cc-----ccccccCC-CCCCCCCCcccEE
Q 015704 254 KLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFNTLPVIYDR-----GL-----IGVMHDWC-EPFDTYPRTYDLL 322 (402)
Q Consensus 254 ~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~r-----g~-----~~~~~~~~-~~~~~~~~sfD~v 322 (402)
..++||-+|.|.|+.++.+.+.. ++..+.++.+| +..++.+.+- +. +..+.+-+ +-+..-++.||+|
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID-~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDID-GKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESC-HHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcC-CcceEEEecCC-HHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 45689999999999999999863 23344444444 2333333221 11 22222111 1111124789999
Q ss_pred EEccccccccccCC-HHHHHHHhhhhccCCcEEEEEe
Q 015704 323 HAAGLFSVESKRCN-MSTIMLEMDRMLRPGGHVYIRD 358 (402)
Q Consensus 323 ~~~~~~~~~~~~~~-~~~~l~e~~RvLrpgG~~~~~~ 358 (402)
+....-..-..... =......+.|.|+|||.++..-
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 98732211110000 1478899999999999999863
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.85 E-value=0.051 Score=43.89 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=59.6
Q ss_pred CCCCeEEEECCcc-chhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC---------CCCCCe
Q 015704 9 RLLRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP---------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~-G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp---------~~~~sf 75 (402)
+++.+||-+|||. |.++..+++. +++++|.++ ...+.+++.+....+......... ...+.+
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~-----~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~ 99 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP-----RRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLP 99 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcccccccchHH-----HHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCC
Confidence 4678999999984 5555555543 677777654 445777777655444322111100 113568
Q ss_pred eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 76 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
|+|+-. + .....+....++++|+|.+++...+
T Consensus 100 D~vid~-~------g~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 100 NVTIDC-S------GNEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp SEEEEC-S------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred ceeeec-C------CChHHHHHHHHHHhcCCceEEEecC
Confidence 999843 1 2356788999999999999998543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=94.84 E-value=0.011 Score=49.14 Aligned_cols=93 Identities=13% Similarity=0.132 Sum_probs=53.0
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHh---c-Ccc---cccc-cCCCCCCC--CC-CcccEEEE
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYD---R-GLI---GVMH-DWCEPFDT--YP-RTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~---r-g~~---~~~~-~~~~~~~~--~~-~sfD~v~~ 324 (402)
+|||+-||+|.++-..+++|+. .|+-+| +...++.+.+ + ++- ..++ .-+..+.. .. ..||+|++
T Consensus 46 ~vLDlFaGsG~~glEalSRGA~----~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSRQAK----KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS----EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred eEeecccCccceeeeeeeecce----eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 5999999999999999999984 555555 2333332222 1 220 1111 10011111 12 47999999
Q ss_pred ccccccccccCCHHHHHHHhh--hhccCCcEEEEE
Q 015704 325 AGLFSVESKRCNMSTIMLEMD--RMLRPGGHVYIR 357 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~--RvLrpgG~~~~~ 357 (402)
.==+.. ...+.+|.-+. .+|+|+|.+++-
T Consensus 122 DPPY~~----~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 122 DPPFHF----NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCCSSS----CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chhHhh----hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 621111 11234444443 589999999995
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.71 E-value=0.019 Score=52.77 Aligned_cols=100 Identities=14% Similarity=0.267 Sum_probs=60.3
Q ss_pred CeEEEECCccchhHHHHccC--------------------CceEEeCCccchHHHHHHHHHHcC-CCcEEEe---ccccC
Q 015704 12 RVVMDAGCGVASFGAYLLPR--------------------NVITMSIAPKDVHENQIQFALERG-APAMVAA---FATRR 67 (402)
Q Consensus 12 ~~VLDiGcG~G~~~~~L~~~--------------------~v~~vdi~~~~~~~a~~~~a~~~~-~~~~~~~---~d~~~ 67 (402)
-+|.|+||.+|..+..+... +|.--|+-..|............. ....+.. +..-.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 47999999999766433221 344556666666544422211111 1122222 12233
Q ss_pred CCCCCCCeeEEEecCccccccc---------------------------------ChHHHHHHHHHhcCCCeEEEEEe
Q 015704 68 LPYPSQAFDLIHCSRCRINWTR---------------------------------DDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 68 lp~~~~sfDlI~s~~~~~~~~~---------------------------------d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
--||+++.|+++|+.+ +||.. |...+|+.=++-|+|||.++++.
T Consensus 133 rLfP~~Slh~~~Ss~a-lHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYS-LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEESC-TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hcCCCCceEEeeehhh-hhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 3378999999998765 77742 11246666678899999999985
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.01 Score=52.07 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCCCeEEEECCccchhHHHHccC--CceEEeCCccch
Q 015704 9 RLLRVVMDAGCGVASFGAYLLPR--NVITMSIAPKDV 43 (402)
Q Consensus 9 ~~~~~VLDiGcG~G~~~~~L~~~--~v~~vdi~~~~~ 43 (402)
.++..|||||||+|.++..|++. .++++|++....
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~ 56 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLA 56 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchh
Confidence 35779999999999999999986 899999886443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.52 E-value=0.038 Score=45.20 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=59.3
Q ss_pred CCCCeEEEECCcc-chhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeE
Q 015704 9 RLLRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~-G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp------~~~~sfDl 77 (402)
+++.+||=+|||. |..+..+++. .|+++|.++ .+.+.+++.+....+...+ +... .....||+
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~-----~r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~G~D~ 99 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP-----ICVEAAKFYGATDILNYKN-GHIEDQVMKLTNGKGVDR 99 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH-----HHHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTSCEEE
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchh-----hhHHHHHhhCccccccccc-hhHHHHHHHHhhccCcce
Confidence 4677899999986 6666666654 678887764 4456777776544332211 1110 12345999
Q ss_pred EEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
|+-... ....+++..+.++|+|.+++...
T Consensus 100 vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 100 VIMAGG-------GSETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EEECSS-------CTTHHHHHHHHEEEEEEEEECCC
T ss_pred EEEccC-------CHHHHHHHHHHHhcCCEEEEEee
Confidence 985321 23567888899999999999753
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.47 E-value=0.027 Score=50.90 Aligned_cols=124 Identities=16% Similarity=0.103 Sum_probs=66.1
Q ss_pred ccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChh---hHHhc-Cc--ccccccCCCCCCCCCCcccE
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLP---VIYDR-GL--IGVMHDWCEPFDTYPRTYDL 321 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~---~~~~r-g~--~~~~~~~~~~~~~~~~sfD~ 321 (402)
....|. .|||+-||+|+=+.+|++.-. ....|++.| +...++ ...+| |+ +-.++.....+...+..||.
T Consensus 113 ~~~~g~--~vlD~CAapGgKt~~l~~~~~--~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 113 DPKPGE--IVADMAAAPGGKTSYLAQLMR--NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp CCCTTC--EEEECCSSCSHHHHHHHHHTT--TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred cCCccc--eeeecccchhhhhHhhhhhcc--cccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccE
Confidence 344453 499999999997777765411 111355555 222222 22222 44 22233322222333478999
Q ss_pred EEEc------cccccccc------cCCH-------HHHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHHhcCce
Q 015704 322 LHAA------GLFSVESK------RCNM-------STIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKAMGWH 376 (402)
Q Consensus 322 v~~~------~~~~~~~~------~~~~-------~~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~~~~w~ 376 (402)
|.+. +++..-++ ..++ ..+|....+.|||||+++.+. +.+=...++.++++-.++
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~ 266 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 266 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCE
Confidence 9872 22321110 0011 177888889999999999983 223345556666665443
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.41 E-value=0.036 Score=51.26 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=63.5
Q ss_pred CCCeEEEECCccchhHHHHcc-C---CceEEeCCccchHHHHHHHHHHcCCCcE----------------EEeccccCCC
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-R---NVITMSIAPKDVHENQIQFALERGAPAM----------------VAAFATRRLP 69 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~----------------~~~~d~~~lp 69 (402)
++.+|||..||+|..+...+. . .|++.|+++..+.... +..+.++.... ....|...+.
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~-~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK-RNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH-HHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHH-HHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 457999999999988775443 2 6888999987665444 33433433211 1122211111
Q ss_pred -CCCCCeeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 70 -YPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 70 -~~~~sfDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
-....||+|..-. +. .+..++..+.+.++.||.+.++.
T Consensus 124 ~~~~~~fDvIDiDP----fG-s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 124 AERHRYFHFIDLDP----FG-SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHSTTCEEEEEECC----SS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhcCcCCcccCCC----CC-CcHHHHHHHHHHhccCCEEEEEe
Confidence 1245799998542 22 56889999999999999999983
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=94.08 E-value=0.16 Score=47.54 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=78.5
Q ss_pred HHHHHHhcccCCCCcceEEeccccchHHHHHHhhcC----CCc------eEEEeccCC-CCCChhhHH----hcCc----
Q 015704 241 IESYVRALHWKKMKLRNVLDMRAGFGGFAAALIEQK----FDC------WVMNVVPVS-GFNTLPVIY----DRGL---- 301 (402)
Q Consensus 241 ~~~y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~----~~~------~~~~v~~~~-~~~~~~~~~----~rg~---- 301 (402)
++...+.+.... -.+|+|-.||+|+|.....++- .+. ...++-+.| .+.+..++. -+|+
T Consensus 151 v~~mv~ll~~~~--~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 151 IQAMVDCINPQM--GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHHHCCCT--TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred hHhhheeccCcc--cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence 334444444332 2459999999999987765531 000 000122222 122222222 1232
Q ss_pred ccccccCCCCCCCCC-CcccEEEEccccccccc-------------cCCH-HHHHHHhhhhccCCcEEEEEeCh------
Q 015704 302 IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESK-------------RCNM-STIMLEMDRMLRPGGHVYIRDSI------ 360 (402)
Q Consensus 302 ~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~-------------~~~~-~~~l~e~~RvLrpgG~~~~~~~~------ 360 (402)
....+. ..+...+ ..||+|++.-=|..... ..+. ...+..+...|||||.+.+=-+.
T Consensus 229 ~~i~~~--d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~ 306 (425)
T d2okca1 229 SPIVCE--DSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEA 306 (425)
T ss_dssp CSEEEC--CTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCS
T ss_pred ceeecC--chhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhh
Confidence 111111 1222344 69999999755532110 0011 25788899999999976665432
Q ss_pred hhHHHHHHHHHhcCceEEEeecCCC----CCCceEEEEEEec
Q 015704 361 DVMDELQEIGKAMGWHVTLRETAEG----PHASYRILTADKR 398 (402)
Q Consensus 361 ~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~l~~~k~ 398 (402)
.....+++.+-.-++=..+..-..+ ...+--||+.+|+
T Consensus 307 ~~~~~iR~~Ll~~~~i~aIi~LP~~~F~~t~v~t~Ilil~K~ 348 (425)
T d2okca1 307 GAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKG 348 (425)
T ss_dssp THHHHHHHHHHHHEEEEEEEECCSSSSSSTTCCEEEEEEEES
T ss_pred hhHHHHHHHHHHhcchhHhhcCCcccccCCCCCeEEEEEECC
Confidence 2245666655544444333332222 4456778888884
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.00 E-value=0.064 Score=46.08 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=48.9
Q ss_pred ceEEeccccchHHHHHHh----hcC--CCceEEEeccCCCCCChhhHHhcCcccccccCC---CCCCCCC-CcccEEEEc
Q 015704 256 RNVLDMRAGFGGFAAALI----EQK--FDCWVMNVVPVSGFNTLPVIYDRGLIGVMHDWC---EPFDTYP-RTYDLLHAA 325 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~----~~~--~~~~~~~v~~~~~~~~~~~~~~rg~~~~~~~~~---~~~~~~~-~sfD~v~~~ 325 (402)
.+||.+|++.|+-+..++ ..+ ..+..+++.+... ......... +..+...+ +.+..+. ..||+|+-.
T Consensus 82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~--~~~~~~~~~-I~~i~gDs~~~~~~~~l~~~~~dlIfID 158 (232)
T d2bm8a1 82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRC--QIPASDMEN-ITLHQGDCSDLTTFEHLREMAHPLIFID 158 (232)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTC--CCCGGGCTT-EEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhh--hhhhccccc-eeeeecccccHHHHHHHHhcCCCEEEEc
Confidence 359999999998655444 222 2234444433211 111111111 22222211 1112233 478888775
Q ss_pred cccccccccCCHHHHHHHhhhhccCCcEEEEEeCh
Q 015704 326 GLFSVESKRCNMSTIMLEMDRMLRPGGHVYIRDSI 360 (402)
Q Consensus 326 ~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~~~~ 360 (402)
.. |... .+..-.++...|+|||++|+-|..
T Consensus 159 ~~--H~~~---~v~~~~~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 159 NA--HANT---FNIMKWAVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp SS--CSSH---HHHHHHHHHHTCCTTCEEEECSCH
T ss_pred CC--cchH---HHHHHHHHhcccCcCCEEEEEcCC
Confidence 43 3321 112222567899999999999974
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=93.36 E-value=0.052 Score=46.79 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=29.4
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR 299 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r 299 (402)
.+||++|||+|.++..|++.++ .|++++ .+++.+...++
T Consensus 23 d~VlEIGpG~G~LT~~Ll~~~~-----~v~avE~D~~l~~~l~~~ 62 (235)
T d1qama_ 23 DNIFEIGSGKGHFTLELVQRCN-----FVTAIEIDHKLCKTTENK 62 (235)
T ss_dssp CEEEEECCTTSHHHHHHHHHSS-----EEEEECSCHHHHHHHHHH
T ss_pred CeEEEECCCchHHHHHHHhCcC-----ceEEEeeccchHHHHHHH
Confidence 3499999999999999999987 566666 34555555544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=0.047 Score=44.20 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=58.1
Q ss_pred CCCCeEEEECCc-cchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccC-CCCCCCCeeEEEecCc
Q 015704 9 RLLRVVMDAGCG-VASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRR-LPYPSQAFDLIHCSRC 83 (402)
Q Consensus 9 ~~~~~VLDiGcG-~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~-lp~~~~sfDlI~s~~~ 83 (402)
+++.+||-+|+| .|.++..+++. +++++|.++.- .+.+++.|....+...+... .....+.||.|+....
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k-----~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~ 100 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK-----REDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCAS 100 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT-----HHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCS
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccccccccccchhH-----HHHhhccCCcEEeeccchHHHHHhhhcccceEEEEec
Confidence 467899999998 46666555543 67788887643 35666777554443222111 1112457999885322
Q ss_pred ccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 84 RINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 84 ~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
..+ ...+....+.|+|+|.+++...
T Consensus 101 ~~~-----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 101 SLT-----DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CST-----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCc-----cchHHHHHHHhhccceEEEecc
Confidence 111 1124567899999999998753
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.02 E-value=0.1 Score=42.42 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=57.5
Q ss_pred CCCCeEEEECCccc-hhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVA-SFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G-~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-----p~~~~sfDlI 78 (402)
+++.+||=+|||.- ..+..+++. .++.+|.++ ...+.+++.+....+...+ ++. .+.++.||+|
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~-----~k~~~a~~~Ga~~~i~~~~-~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE-----SRLELAKQLGATHVINSKT-QDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH-----HHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTSCEEEE
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH-----HHHHHHHHcCCeEEEeCCC-cCHHHHHHHHcCCCCcEE
Confidence 46789999999853 344444432 455566553 4557777777554432211 111 1234679999
Q ss_pred EecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+-. + .....++...++++|+|.+++...
T Consensus 101 id~-~------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 101 LES-T------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEC-S------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEc-C------CcHHHHHHHHhcccCceEEEEEee
Confidence 843 1 235678899999999999998753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.97 E-value=0.077 Score=48.54 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=34.7
Q ss_pred ccccccCCCCCCCCC-CcccEEEEcccccccccc-CC-----------------------------HHHHHHHhhhhccC
Q 015704 302 IGVMHDWCEPFDTYP-RTYDLLHAAGLFSVESKR-CN-----------------------------MSTIMLEMDRMLRP 350 (402)
Q Consensus 302 ~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~~~-~~-----------------------------~~~~l~e~~RvLrp 350 (402)
-|..|+.. || +|.|++||+..++.|... |. ....|+-=.+-|+|
T Consensus 127 pGSFY~rL-----fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 201 (359)
T d1m6ex_ 127 PGSFYGRL-----FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP 201 (359)
T ss_dssp ESCSSSCC-----SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT
T ss_pred CCchhhhc-----CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555533 78 899999999999886421 11 11234444477899
Q ss_pred CcEEEEE
Q 015704 351 GGHVYIR 357 (402)
Q Consensus 351 gG~~~~~ 357 (402)
||.++++
T Consensus 202 GG~mvl~ 208 (359)
T d1m6ex_ 202 GGRMVLT 208 (359)
T ss_dssp TCEEEEE
T ss_pred CcEEEEE
Confidence 9999997
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.89 E-value=0.022 Score=47.68 Aligned_cols=103 Identities=18% Similarity=0.028 Sum_probs=60.9
Q ss_pred ccCCCCcceEEeccccchH-HHHHHhh-cCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCC------CCCcc
Q 015704 249 HWKKMKLRNVLDMRAGFGG-FAAALIE-QKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDT------YPRTY 319 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~-~~~~l~~-~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~------~~~sf 319 (402)
.+..|. +||-+|||..+ .++.+++ .|+. .|+.++ +++.++.+.+.|.-..+....+++.. -+..+
T Consensus 22 ~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~----~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 22 GVGPGS--TVYVAGAGPVGLAAAASARLLGAA----VVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTCS----EEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCCCC--EEEEECcCHHHHHHHHHHHhhccc----ceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 344454 59999999944 5566664 3541 344444 35678888888874333322222111 12468
Q ss_pred cEEEEccccc------cccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 320 DLLHAAGLFS------VESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 320 D~v~~~~~~~------~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
|+++-..-+. +..........|.++.+++||||.+++-
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 8887542211 1111122358999999999999999987
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.82 E-value=0.14 Score=41.66 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=60.8
Q ss_pred CCCCeEEEECCcc-chhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeE
Q 015704 9 RLLRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~-G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp------~~~~sfDl 77 (402)
+++.+||=+|||. |.++..+++. .++++|.++. +.+.+++.+....+.....+... ...+.+|+
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-----r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~ 101 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE-----KFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY 101 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG-----GHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH-----HHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence 4678999999997 6666665543 5777777764 34677777765544221111110 12457899
Q ss_pred EEecCcccccccChHHHHHHHHHhcCCC-eEEEEEeC
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRAG-GYFAWAAQ 113 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~Lkpg-G~li~~~~ 113 (402)
++-.. .....+.+..+.+++| |.+++...
T Consensus 102 vie~~-------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 102 SLDCA-------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EEESS-------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEec-------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 98431 2367899999999996 99998854
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.022 Score=46.31 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=51.3
Q ss_pred eEEecccc-chHHHHHHhh-cCCCceEEEeccCC-CCCChhhHHhcCcccccccC--CCCCCCCCCcccEEEEccccccc
Q 015704 257 NVLDMRAG-FGGFAAALIE-QKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDW--CEPFDTYPRTYDLLHAAGLFSVE 331 (402)
Q Consensus 257 ~vLD~g~g-~G~~~~~l~~-~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~--~~~~~~~~~sfD~v~~~~~~~~~ 331 (402)
+||-+||| .|.++..+++ .|+ .|..++ ++..++.+.+-|.-..+... .+......+.||.|+..-.-.+
T Consensus 30 ~vlI~GaG~vG~~a~q~ak~~G~-----~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~- 103 (168)
T d1piwa2 30 KVGIVGLGGIGSMGTLISKAMGA-----ETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT- 103 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-----EEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST-
T ss_pred EEEEECCCCcchhHHHHhhhccc-----cccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc-
Confidence 48889998 5666666654 476 333333 45677888777762222211 1111123368998765311111
Q ss_pred cccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 332 SKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 332 ~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
...+....++|||||.+++-
T Consensus 104 ------~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 104 ------DIDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp ------TCCTTTGGGGEEEEEEEEEC
T ss_pred ------cchHHHHHHHhhccceEEEe
Confidence 12245678999999999886
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.48 E-value=0.089 Score=43.76 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=59.6
Q ss_pred CCCCeEEEECCcc-chhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeE
Q 015704 9 RLLRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~-G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp------~~~~sfDl 77 (402)
+++.+||-+|||. |..+..+++. .++++|.++ .+.+.+++.+....+...+ +++. .....+|+
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~-----~rl~~a~~~Ga~~~~~~~~-~~~~~~i~~~t~g~g~D~ 97 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP-----ARLAHAKAQGFEIADLSLD-TPLHEQIAALLGEPEVDC 97 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHTTCEEEETTSS-SCHHHHHHHHHSSSCEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc-----hhhHhhhhccccEEEeCCC-cCHHHHHHHHhCCCCcEE
Confidence 4678999999997 5455554432 677777664 4457777776543221111 1110 12346899
Q ss_pred EEecCcc------cc--cccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCR------IN--WTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~------~~--~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++-.... ++ ........++.+.+.++|||.+++..
T Consensus 98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 9843210 11 11123578999999999999999885
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.17 Score=40.72 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=59.1
Q ss_pred CCCCeEEEECCccc-hhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC--------CCCCCe
Q 015704 9 RLLRVVMDAGCGVA-SFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP--------YPSQAF 75 (402)
Q Consensus 9 ~~~~~VLDiGcG~G-~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp--------~~~~sf 75 (402)
+++.+||=+|||.. .++..++.. .++++|.++ ...+.+++.+........+ +... -....+
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~-----~rl~~a~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA-----TRLSKAKEIGADLVLQISK-ESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHTTCSEEEECSS-CCHHHHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH-----HHHHHHHHhCCcccccccc-cccccccccccccCCCCc
Confidence 46779999999864 444444432 577777664 4557777777654433221 1110 013468
Q ss_pred eEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 76 DLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 76 DlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
|+|+-.. .-...++...+.+++||.+++...+
T Consensus 99 Dvvid~~-------G~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 99 EVTIECT-------GAEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp SEEEECS-------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eEEEecc-------CCchhHHHHHHHhcCCCEEEEEecC
Confidence 9998532 2356789999999999999998543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.35 E-value=0.12 Score=42.13 Aligned_cols=91 Identities=27% Similarity=0.379 Sum_probs=56.9
Q ss_pred CCCCeEEEECCcc-chhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC--------C-CCCCC
Q 015704 9 RLLRVVMDAGCGV-ASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL--------P-YPSQA 74 (402)
Q Consensus 9 ~~~~~VLDiGcG~-G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l--------p-~~~~s 74 (402)
+++.+||-+|||. |.++..+++. .|+++|.++ ...+.+++.+....+...+ .+. . .....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~-----~~~~~a~~lGa~~vi~~~~-~~~~~~~~~i~~~~~~~g 100 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP-----NRLKLAEEIGADLTLNRRE-TSVEERRKAIMDITHGRG 100 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHTTCSEEEETTT-SCHHHHHHHHHHHTTTSC
T ss_pred CCCCEEEEECCCccchhheeccccccccccccccccc-----ccccccccccceEEEeccc-cchHHHHHHHHHhhCCCC
Confidence 4678999999984 5555555543 467777764 3446777766544332211 110 0 12346
Q ss_pred eeEEEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 75 FDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 75 fDlI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
+|+|+-... -...++...+.|+|||.+++..
T Consensus 101 ~Dvvid~vG-------~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 101 ADFILEATG-------DSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEEEECSS-------CTTHHHHHHHHEEEEEEEEECC
T ss_pred ceEEeecCC-------chhHHHHHHHHhcCCCEEEEEe
Confidence 999984321 1356788899999999998874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.01 E-value=0.14 Score=41.08 Aligned_cols=93 Identities=16% Similarity=0.017 Sum_probs=55.0
Q ss_pred ccCCCCcceEEeccccc-hHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCccccc-ccC-CCCCC--------CC
Q 015704 249 HWKKMKLRNVLDMRAGF-GGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVM-HDW-CEPFD--------TY 315 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~-G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~-~~~-~~~~~--------~~ 315 (402)
+...+. +||=+|||. |.++..+++. |+ +|+.++ ++..++.+.+-|.-..+ ++. .+... .+
T Consensus 23 ~~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga-----~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 23 GVQLGT--TVLVIGAGPIGLVSVLAAKAYGA-----FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTC-----EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCCC--EEEEEcccccchhhHhhHhhhcc-----cccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccc
Confidence 444443 478889994 5555555543 55 444554 34567788777652111 111 11100 12
Q ss_pred CCcccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 316 PRTYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 316 ~~sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
+..+|+|+-. . .-+..+....++|||||.+++-
T Consensus 96 g~g~D~vid~--------~-g~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 96 GDLPNVTIDC--------S-GNEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp SSCCSEEEEC--------S-CCHHHHHHHHHHSCTTCEEEEC
T ss_pred ccCCceeeec--------C-CChHHHHHHHHHHhcCCceEEE
Confidence 3568888754 1 2257899999999999999987
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.16 Score=40.93 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=56.8
Q ss_pred CCCCeEEEECC--ccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC------CCCCCCeeE
Q 015704 9 RLLRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL------PYPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGc--G~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l------p~~~~sfDl 77 (402)
+++.+||-.|+ |.|..+..+++. .+++++-++ ...+.+++.+....+...+ .++ ....+.+|+
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~-----~~~~~~~~~Ga~~vi~~~~-~~~~~~i~~~t~~~g~d~ 100 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE-----EGQKIVLQNGAHEVFNHRE-VNYIDKIKKYVGEKGIDI 100 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH-----HHHHHHHHTTCSEEEETTS-TTHHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEEeccccccccccccccccCcccccccccc-----cccccccccCccccccccc-ccHHHHhhhhhccCCceE
Confidence 46789999996 345666666543 566665442 3446777777654432211 111 013467999
Q ss_pred EEecCcccccccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
|+... -...+.+..++|+|+|.++...
T Consensus 101 v~d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 101 IIEML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred Eeecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 99642 1356888899999999999864
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.10 E-value=0.065 Score=43.26 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCCCeEEEECCcc-chhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCCCCCCCeeEEEecCcc
Q 015704 9 RLLRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLPYPSQAFDLIHCSRCR 84 (402)
Q Consensus 9 ~~~~~VLDiGcG~-G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp~~~~sfDlI~s~~~~ 84 (402)
+++.+||=+|||. |.++..+++. .+++++.+... .+.+++.+....+...+........+.+|.++-...
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~-----~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g- 102 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK-----REAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA- 102 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG-----HHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS-
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhH-----HHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee-
Confidence 4678999999974 5566666553 55666665532 256666665544322211111122357999984321
Q ss_pred cccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 85 INWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 85 ~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
....+....+.++++|.+++...
T Consensus 103 ------~~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 103 ------APHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ------SCCCHHHHHTTEEEEEEEEECCC
T ss_pred ------cchhHHHHHHHHhcCCEEEEecc
Confidence 12346777899999999999853
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.06 E-value=0.15 Score=40.75 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=54.9
Q ss_pred CCCCeEEEECCcc-chhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC-----CCCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGV-ASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL-----PYPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~-G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l-----p~~~~sfDlI~ 79 (402)
+++.+||=+|||. |..+..+++. .++++|.++ ...+.+++.+....+...+ ++. ....+.+|.|+
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~-----~~~~~a~~~Ga~~~i~~~~-~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD-----AKLELARKLGASLTVNARQ-EDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchh-----hHHHhhhccCccccccccc-hhHHHHHHHhhcCCccccc
Confidence 4678899999985 5555555543 577776653 4457777777554432211 111 01123345555
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+.. ....+....+.|+|||.+++...
T Consensus 100 ~~~--------~~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 100 TAV--------SNSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp CCS--------CHHHHHHHHTTEEEEEEEEECCC
T ss_pred ccc--------cchHHHHHHHHhcCCcEEEEEEe
Confidence 432 24568889999999999998753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.80 E-value=0.099 Score=44.77 Aligned_cols=65 Identities=11% Similarity=-0.019 Sum_probs=42.1
Q ss_pred CCCC-CcccEEEEccccc----cccccCC-------HHHHHHHhhhhccCCcEEEEEeChhhHHHHHHHHHhcCceE
Q 015704 313 DTYP-RTYDLLHAAGLFS----VESKRCN-------MSTIMLEMDRMLRPGGHVYIRDSIDVMDELQEIGKAMGWHV 377 (402)
Q Consensus 313 ~~~~-~sfD~v~~~~~~~----~~~~~~~-------~~~~l~e~~RvLrpgG~~~~~~~~~~~~~~~~~~~~~~w~~ 377 (402)
...| +|+|+|+++-=+. ......+ +...+.|+.|+|||||.+++-........+...+....|..
T Consensus 17 ~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~ 93 (256)
T d1g60a_ 17 DQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIF 93 (256)
T ss_dssp HHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEE
T ss_pred hhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhhhhhhhccccee
Confidence 3456 7888888872111 1111111 34688999999999999987766655666666666666664
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=89.89 E-value=0.044 Score=45.00 Aligned_cols=88 Identities=24% Similarity=0.248 Sum_probs=53.5
Q ss_pred eEEeccccc-hHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCC-------C--CCCCcccEEEE
Q 015704 257 NVLDMRAGF-GGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPF-------D--TYPRTYDLLHA 324 (402)
Q Consensus 257 ~vLD~g~g~-G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~-------~--~~~~sfD~v~~ 324 (402)
+||-+|||. |.++..+++. |+. +|+.++ +++.++.+.+-|.-..++...+.+ . +.++.||+|+-
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~Ga~----~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid 106 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSLGAE----NVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE 106 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTBS----EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred EEEEECCCccchhheecccccccc----cccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence 588899985 6666666654 531 344444 456677777777522222211111 1 11256999875
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
. . .-+..+....+.|||||.+++-
T Consensus 107 ~--------v-G~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 107 A--------T-GDSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp C--------S-SCTTHHHHHHHHEEEEEEEEEC
T ss_pred c--------C-CchhHHHHHHHHhcCCCEEEEE
Confidence 5 1 1146788889999999999865
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.50 E-value=0.43 Score=42.12 Aligned_cols=112 Identities=12% Similarity=0.111 Sum_probs=54.6
Q ss_pred eEEeccccchHHHHHHhhc-CCCceEEEeccCC-CCCCh---hhHHhc-Cc--ccccccCCCCCCC-CC--CcccEEEEc
Q 015704 257 NVLDMRAGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTL---PVIYDR-GL--IGVMHDWCEPFDT-YP--RTYDLLHAA 325 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~---~~~~~r-g~--~~~~~~~~~~~~~-~~--~sfD~v~~~ 325 (402)
.|||+.||+|+=+.+|++. +-.. .|.+.| +...+ ....+| |+ +...+.-...+.. .| ..||.|.+.
T Consensus 97 ~vLD~cAapGgKt~~la~l~~~~~---~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~D 173 (293)
T d2b9ea1 97 HVIDACAAPGNKTSHLAALLKNQG---KIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD 173 (293)
T ss_dssp EEEESSCTTCHHHHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred eEEecccchhhHHHHHHHHhcCCc---eEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeec
Confidence 4999999999988888754 1011 344444 22222 222222 44 2233322222222 23 579999873
Q ss_pred ------cccccccc--------cCCHH-------HHHHHhhhhccCCcEEEEEe----ChhhHHHHHHHHHh
Q 015704 326 ------GLFSVESK--------RCNMS-------TIMLEMDRMLRPGGHVYIRD----SIDVMDELQEIGKA 372 (402)
Q Consensus 326 ------~~~~~~~~--------~~~~~-------~~l~e~~RvLrpgG~~~~~~----~~~~~~~~~~~~~~ 372 (402)
.++..-++ ...+. .+|.... .|||||+++-+. +.+-...++.++++
T Consensus 174 aPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~ 244 (293)
T d2b9ea1 174 PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQ 244 (293)
T ss_dssp CCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTT
T ss_pred CcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHh
Confidence 22222110 00111 2333333 479999999883 33334556666654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.14 Score=41.33 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=53.8
Q ss_pred eEEeccc--cchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCC-----C-CCcccEEEEcc
Q 015704 257 NVLDMRA--GFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDT-----Y-PRTYDLLHAAG 326 (402)
Q Consensus 257 ~vLD~g~--g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~-----~-~~sfD~v~~~~ 326 (402)
+||-.|| |.|..+..+++. |+ .|+.++ +++.++.+.+-|.-..+....+++.. . ++.||+|+..
T Consensus 31 ~VlV~Ga~G~vG~~aiq~a~~~G~-----~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~- 104 (174)
T d1yb5a2 31 SVLVHGASGGVGLAACQIARAYGL-----KILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM- 104 (174)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTC-----EEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES-
T ss_pred EEEEEeccccccccccccccccCc-----ccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec-
Confidence 4999986 566667666654 65 333332 34566777777763333211111111 1 3679999986
Q ss_pred ccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 327 LFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 327 ~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.. ...+.+..++|||||.++.-
T Consensus 105 -------~g--~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 105 -------LA--NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp -------CH--HHHHHHHHHHEEEEEEEEEC
T ss_pred -------cc--HHHHHHHHhccCCCCEEEEE
Confidence 21 46788889999999999974
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=88.19 E-value=0.88 Score=43.43 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=46.8
Q ss_pred CcccEEEEcccccccc----------ccCCH-HHHHHHhhhhccCCcEEEEEeChhh------HHHHHHHHHhcCceEEE
Q 015704 317 RTYDLLHAAGLFSVES----------KRCNM-STIMLEMDRMLRPGGHVYIRDSIDV------MDELQEIGKAMGWHVTL 379 (402)
Q Consensus 317 ~sfD~v~~~~~~~~~~----------~~~~~-~~~l~e~~RvLrpgG~~~~~~~~~~------~~~~~~~~~~~~w~~~~ 379 (402)
..||+|.+.-=|.--. ...+. ...|.-+.+.|||||++.+=-+..+ -..+++.+-.=++=..+
T Consensus 255 ~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~~i~aI 334 (524)
T d2ar0a1 255 PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTI 334 (524)
T ss_dssp CCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHEEEEEE
T ss_pred ccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcCCceEE
Confidence 5799999975443211 01111 2478889999999998777644322 23566654443443333
Q ss_pred eecCCC----CCCceEEEEEEe
Q 015704 380 RETAEG----PHASYRILTADK 397 (402)
Q Consensus 380 ~~~~~~----~~~~~~~l~~~k 397 (402)
..-..+ ...+--|||.+|
T Consensus 335 I~LP~~~F~~t~i~t~Il~l~K 356 (524)
T d2ar0a1 335 LRLPTGIFYAQGVKTNVLFFTK 356 (524)
T ss_dssp EECCSSCSSSCSCCEEEEEEEE
T ss_pred EECCCCcCCCCCCCeEEEEEEC
Confidence 322222 456688888887
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.09 E-value=0.43 Score=38.05 Aligned_cols=92 Identities=13% Similarity=0.177 Sum_probs=56.5
Q ss_pred CCCCeEEEECCc--cchhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCee
Q 015704 9 RLLRVVMDAGCG--VASFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFD 76 (402)
Q Consensus 9 ~~~~~VLDiGcG--~G~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp------~~~~sfD 76 (402)
+++.+||=+||+ .|..+..++.. .|++++.++ ...+.+++.+....+...+ ++.. ...+.||
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~-----~~~~~~~~~Ga~~~i~~~~-~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE-----EAVEAAKRAGADYVINASM-QDPLAEIRRITESKGVD 99 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH-----HHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccch-----hhHHHHHHcCCceeeccCC-cCHHHHHHHHhhcccch
Confidence 467799999973 44544444432 566666653 4456777766544332211 1110 1235699
Q ss_pred EEEecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 77 LIHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 77 lI~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+|+... .....++...+.++|||.+++...
T Consensus 100 ~vid~~-------g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 100 AVIDLN-------NSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEESC-------CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred hhhccc-------ccchHHHhhhhhcccCCEEEEecc
Confidence 998532 235677888999999999998754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.04 E-value=0.4 Score=37.99 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred CCCCeEEEECCccc-hhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC----C-CCCCCeeEEE
Q 015704 9 RLLRVVMDAGCGVA-SFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL----P-YPSQAFDLIH 79 (402)
Q Consensus 9 ~~~~~VLDiGcG~G-~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l----p-~~~~sfDlI~ 79 (402)
+++.+||=.|||+- ..+..+++. .+++++.+ +...+.+++.+....+...+ ++. . ...+.+|.|+
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~-----~~r~~~~k~~Ga~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 99 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG-----DEKLELAKELGADLVVNPLK-EDAAKFMKEKVGGVHAAVV 99 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSC-----HHHHHHHHHTTCSEEECTTT-SCHHHHHHHHHSSEEEEEE
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCC-----HHHhhhhhhcCcceeccccc-chhhhhcccccCCCceEEe
Confidence 46789999999864 444444433 55666554 34457777776554432211 111 0 1233455554
Q ss_pred ecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 80 CSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 80 s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+. . -...+....+.|+|+|.+++...
T Consensus 100 ~~-~-------~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 100 TA-V-------SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp SS-C-------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred ec-C-------CHHHHHHHHHHhccCCceEeccc
Confidence 32 1 25678999999999999999753
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=86.64 E-value=0.27 Score=42.41 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHhcccCCCCcceEEeccccchHHHHHHhhcCCCceEEEeccCCCCC----ChhhHHhcC------------ccccccc
Q 015704 244 YVRALHWKKMKLRNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSGFN----TLPVIYDRG------------LIGVMHD 307 (402)
Q Consensus 244 y~~~~~~~~~~~~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~~~----~~~~~~~rg------------~~~~~~~ 307 (402)
..+-++.+.+.-.+|||+=||.|.-+-.|+..|+ .|+.++.+. .++.+.+|. -+..++.
T Consensus 78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~-----~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~ 152 (250)
T d2oyra1 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-----RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-----CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC-----EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC
Confidence 3444555555555799999999999999999998 455554221 222222221 0233343
Q ss_pred CC-CCCCCCCCcccEEEEccccccccc
Q 015704 308 WC-EPFDTYPRTYDLLHAAGLFSVESK 333 (402)
Q Consensus 308 ~~-~~~~~~~~sfD~v~~~~~~~~~~~ 333 (402)
-+ +-+..+..+||+|+..-.|.+-..
T Consensus 153 Ds~~~L~~~~~~~DvIYlDPMFp~~~K 179 (250)
T d2oyra1 153 SSLTALTDITPRPQVVYLDPMFPHKQK 179 (250)
T ss_dssp CHHHHSTTCSSCCSEEEECCCCCCCCC
T ss_pred cHHHHHhccCCCCCEEEECCCCccccc
Confidence 22 223334478999999988877553
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=86.61 E-value=0.25 Score=42.76 Aligned_cols=38 Identities=5% Similarity=0.115 Sum_probs=27.5
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCCC-CCChhhHHh
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVSG-FNTLPVIYD 298 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~~-~~~~~~~~~ 298 (402)
..||.+|||.|.++..|+++++ .|.+++. +...+...+
T Consensus 23 d~vlEIGpG~G~LT~~Ll~~~~-----~v~aiEiD~~l~~~L~~ 61 (252)
T d1qyra_ 23 QAMVEIGPGLAALTEPVGERLD-----QLTVIELDRDLAARLQT 61 (252)
T ss_dssp CCEEEECCTTTTTHHHHHTTCS-----CEEEECCCHHHHHHHHT
T ss_pred CEEEEECCCchHHHHHHHccCC-----ceEEEEeccchhHHHHH
Confidence 3499999999999999999987 5556652 333344333
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=86.58 E-value=0.65 Score=37.07 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=56.9
Q ss_pred CCCCeEEEECCccc-hhHHHHccC----CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC-----CCCCCeeEE
Q 015704 9 RLLRVVMDAGCGVA-SFGAYLLPR----NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP-----YPSQAFDLI 78 (402)
Q Consensus 9 ~~~~~VLDiGcG~G-~~~~~L~~~----~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp-----~~~~sfDlI 78 (402)
+++.+||-+|+|.. ..+..+++. .++++|.++ .+.+.+++.+....+.. +.+... .....+|+|
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~-----~k~~~~~~~ga~~~i~~-~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE-----EKLKLAERLGADHVVDA-RRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH-----HHHHHHHHTTCSEEEET-TSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh-----HHHHHHhhcccceeecC-cccHHHHHHHhhCCCCceEE
Confidence 46789999999864 444444432 566666654 34567777665443321 111110 123469999
Q ss_pred EecCcccccccChHHHHHHHHHhcCCCeEEEEEeC
Q 015704 79 HCSRCRINWTRDDGILLLEVNRMLRAGGYFAWAAQ 113 (402)
Q Consensus 79 ~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~~~ 113 (402)
+-.. .-...++...+.|++||.+++...
T Consensus 105 id~~-------g~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 105 MDFV-------GSQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EESS-------CCHHHHHHGGGGEEEEEEEEECCC
T ss_pred EEec-------CcchHHHHHHHHHhCCCEEEEEeC
Confidence 8432 234578999999999999998754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.24 E-value=0.2 Score=40.31 Aligned_cols=94 Identities=16% Similarity=0.030 Sum_probs=57.5
Q ss_pred ccCCCCcceEEeccccchHHHHHHhh--cCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCC--------CCCC
Q 015704 249 HWKKMKLRNVLDMRAGFGGFAAALIE--QKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFD--------TYPR 317 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~G~~~~~l~~--~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~--------~~~~ 317 (402)
.+..+. +||=+|||..+..+.+.. .|+ .+|+.++ .++.++.+.+-|.-..+....+... +++.
T Consensus 23 ~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~----~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 23 GVTLGH--KVLVCGAGPIGMVTLLVAKAMGA----AQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTC----SEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred CCCCCC--EEEEECCCccHHHHHHHHHHcCC----ceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCC
Confidence 344443 488889988776665433 354 1455555 4567778877776222221111110 1235
Q ss_pred cccEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 318 TYDLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 318 sfD~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.+|+|+-. . .-+..+......+||||.+++-
T Consensus 97 g~Dvvid~--------~-G~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 97 KPEVTIEC--------T-GAEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp CCSEEEEC--------S-CCHHHHHHHHHHSCTTCEEEEC
T ss_pred CceEEEec--------c-CCchhHHHHHHHhcCCCEEEEE
Confidence 68988775 2 2257889999999999999997
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=86.20 E-value=4.8 Score=34.50 Aligned_cols=38 Identities=11% Similarity=-0.027 Sum_probs=30.1
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR 299 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r 299 (402)
.|||.=||+|+.+.+-.+.|- +..++| ++...+++.+|
T Consensus 253 iVlDpF~GSGTT~~AA~~lgR-----~~Ig~El~~~y~~~a~~R 291 (320)
T d1booa_ 253 LVVDIFGGSNTTGLVAERESR-----KWISFEMKPEYVAASAFR 291 (320)
T ss_dssp EEEETTCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHGG
T ss_pred EEEecCCCCcHHHHHHHHcCC-----cEEEEeCCHHHHHHHHHH
Confidence 499999999999988888775 566666 45677888777
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=85.42 E-value=5.4 Score=34.65 Aligned_cols=105 Identities=15% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCCeEEEECCccchhHHHHcc-CCceEEeCCccchHHHHHHHHHHcCCC--c--EEEeccccC-C-------CCCCCCee
Q 015704 10 LLRVVMDAGCGVASFGAYLLP-RNVITMSIAPKDVHENQIQFALERGAP--A--MVAAFATRR-L-------PYPSQAFD 76 (402)
Q Consensus 10 ~~~~VLDiGcG~G~~~~~L~~-~~v~~vdi~~~~~~~a~~~~a~~~~~~--~--~~~~~d~~~-l-------p~~~~sfD 76 (402)
....|+.+|||.-.-...+.. ..+.-+|++-.+....+.+...+.+.. . .....|... + .|..+.-=
T Consensus 89 g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 89 GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp TCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CCCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 345778899998876666642 355555665444444444444444321 1 233334332 1 12223334
Q ss_pred EEEecCcccccccC-hHHHHHHHHHhcCCCeEEEEEeCC
Q 015704 77 LIHCSRCRINWTRD-DGILLLEVNRMLRAGGYFAWAAQP 114 (402)
Q Consensus 77 lI~s~~~~~~~~~d-~~~~l~e~~r~LkpgG~li~~~~~ 114 (402)
++++-.++.++.++ ...+++.+.....||+.+++...+
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 55555454444433 468999999999999999998543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=85.24 E-value=0.23 Score=40.24 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=55.1
Q ss_pred ccCCCCcceEEeccccc-hHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCC----C-CC-Ccc
Q 015704 249 HWKKMKLRNVLDMRAGF-GGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFD----T-YP-RTY 319 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~-G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~----~-~~-~sf 319 (402)
.+..+. +||=+|||. |.++..+++. |+. .|..++ +++.++.+.+-|....++...+.+. . .. ..|
T Consensus 24 ~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~----~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~ 97 (174)
T d1jqba2 24 DIEMGS--SVVVIGIGAVGLMGIAGAKLRGAG----RIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGV 97 (174)
T ss_dssp TCCTTC--CEEEECCSHHHHHHHHHHHTTTCS----CEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCE
T ss_pred CCCCCC--EEEEEcCCcchhhhhhhhhccccc----ccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCc
Confidence 444444 377789997 6667776664 431 244444 3455777777775323322111110 1 12 469
Q ss_pred cEEEEccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 320 DLLHAAGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 320 D~v~~~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
|+|+-. .. -..++.+..++|||||.+++-
T Consensus 98 D~vid~--------~g-~~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 98 DRVIMA--------GG-GSETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EEEEEC--------SS-CTTHHHHHHHHEEEEEEEEEC
T ss_pred ceEEEc--------cC-CHHHHHHHHHHHhcCCEEEEE
Confidence 987664 11 136778888999999999985
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.97 E-value=0.55 Score=40.31 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCCCCeeEEEecCcccc----c------ccChHHHHHHHHHhcCCCeEEEEEe
Q 015704 70 YPSQAFDLIHCSRCRIN----W------TRDDGILLLEVNRMLRAGGYFAWAA 112 (402)
Q Consensus 70 ~~~~sfDlI~s~~~~~~----~------~~d~~~~l~e~~r~LkpgG~li~~~ 112 (402)
++++++|+|+.+...-. | .+.....+.++.|+|||+|.+++..
T Consensus 19 l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 19 LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 56899999998765321 1 1113567899999999999999864
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.82 E-value=0.28 Score=43.03 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.3
Q ss_pred ceEEeccccchHHHHHHhhcCCCceEEEeccCC
Q 015704 256 RNVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS 288 (402)
Q Consensus 256 ~~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~ 288 (402)
..||++|+|.|..+..|+++++ .|++++
T Consensus 23 d~VlEIGPG~G~LT~~Ll~~~~-----~v~aiE 50 (278)
T d1zq9a1 23 DVVLEVGPGTGNMTVKLLEKAK-----KVVACE 50 (278)
T ss_dssp CEEEEECCTTSTTHHHHHHHSS-----EEEEEE
T ss_pred CEEEEECCCchHHHHHHHhcCC-----cEEEEE
Confidence 3599999999999999999987 455554
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.48 E-value=0.38 Score=39.04 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=52.4
Q ss_pred EEecc--ccchHHHHHHhhc-CCCceEEEeccCC-CCCChhhHHhcCcccccc--c-CCCCCCCC-CCcccEEEEccccc
Q 015704 258 VLDMR--AGFGGFAAALIEQ-KFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMH--D-WCEPFDTY-PRTYDLLHAAGLFS 329 (402)
Q Consensus 258 vLD~g--~g~G~~~~~l~~~-~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~--~-~~~~~~~~-~~sfD~v~~~~~~~ 329 (402)
||=-| .|.|+++-.|++. |+ .|+... +++.++.+.+-|.-..+. + +.+....- +..||+|+=.
T Consensus 35 VLI~gaaGGVG~~aiQlak~~Ga-----~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~---- 105 (176)
T d1xa0a2 35 VLVTGATGGVGSLAVSMLAKRGY-----TVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP---- 105 (176)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTC-----CEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEEC----
T ss_pred EEEEeccchHHHHHHHHHHHcCC-----ceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEc----
Confidence 66666 5778888888854 66 344443 456677887777722221 1 11111111 2578887765
Q ss_pred cccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 330 VESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 330 ~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.. ...+.+..+.|||||.++.-
T Consensus 106 -vg-----g~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 106 -VG-----GRTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp -ST-----TTTHHHHHHTEEEEEEEEEC
T ss_pred -CC-----chhHHHHHHHhCCCceEEEe
Confidence 11 35789999999999999976
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=83.36 E-value=2.5 Score=33.58 Aligned_cols=94 Identities=10% Similarity=-0.044 Sum_probs=55.4
Q ss_pred CCCCeEEEECCccc-hhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCC------CCCCCCeeE
Q 015704 9 RLLRVVMDAGCGVA-SFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRL------PYPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~G-~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~l------p~~~~sfDl 77 (402)
+++.+||=+|||.. ..+..+++ ..|+++|.+.. ..+.+++.+....+...+.+.. ...++.+|.
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~-----kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~ 100 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD-----KFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDY 100 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG-----GHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH-----HHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcE
Confidence 46789999999864 33333333 26888887754 3367777775554422111111 012356898
Q ss_pred EEecCcccccccChHHHHHHHHHhcCC-CeEEEEEeCC
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRA-GGYFAWAAQP 114 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~Lkp-gG~li~~~~~ 114 (402)
|+-.. .....+.+....+++ +|.+++...+
T Consensus 101 vid~~-------g~~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 101 AVECA-------GRIETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp EEECS-------CCHHHHHHHHHTBCTTTCEEEECCCC
T ss_pred EEEcC-------CCchHHHHHHHHHHHhcCceEEEEEe
Confidence 88432 234566666766655 6998887543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=82.09 E-value=1.4 Score=36.93 Aligned_cols=38 Identities=18% Similarity=-0.008 Sum_probs=27.4
Q ss_pred eEEeccccchHHHHHHhhcCCCceEEEeccCC-CCCChhhHHhc
Q 015704 257 NVLDMRAGFGGFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDR 299 (402)
Q Consensus 257 ~vLD~g~g~G~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~r 299 (402)
.|||.=||+|+.+.+-.+.|- +-.+++ ++..++.|.+|
T Consensus 215 ~VlDpF~GSGTT~~aa~~~~R-----~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 215 LVLDCFMGSGTTAIVAKKLGR-----NFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp EEEESSCTTCHHHHHHHHTTC-----EEEEEESCHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHcCC-----eEEEEeCCHHHHHHHHHH
Confidence 399999999999888877764 455555 35566666554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=81.96 E-value=2 Score=34.31 Aligned_cols=94 Identities=9% Similarity=-0.012 Sum_probs=54.5
Q ss_pred CCCCeEEEECCccc-hhHHHHcc----CCceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeE
Q 015704 9 RLLRVVMDAGCGVA-SFGAYLLP----RNVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGcG~G-~~~~~L~~----~~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp------~~~~sfDl 77 (402)
+++.+||=+|||.. ..+..+++ .+|+++|.++.- .+.+++.+....+...+.+... .....+|.
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k-----l~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~ 102 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK-----FEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGY 102 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG-----HHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH-----HHHHHhcCCcEEECccccchHHHHHHHHhccccceE
Confidence 46789999999864 33333332 268899888653 3677777766544322211110 12356898
Q ss_pred EEecCcccccccChHHHHHHHHH-hcCCCeEEEEEeCC
Q 015704 78 IHCSRCRINWTRDDGILLLEVNR-MLRAGGYFAWAAQP 114 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r-~LkpgG~li~~~~~ 114 (402)
++-.. .....+.+... +++++|.+++...+
T Consensus 103 vi~~~-------g~~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 103 TFEVI-------GHLETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp EEECS-------CCHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred EEEeC-------CchHHHHHHHHHhhcCCeEEEEEEcc
Confidence 87431 22344455444 45566999887543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=81.20 E-value=0.27 Score=39.33 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=53.2
Q ss_pred ccCCCCcceEEeccccc-hHHHHHHhh-cCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEE
Q 015704 249 HWKKMKLRNVLDMRAGF-GGFAAALIE-QKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHA 324 (402)
Q Consensus 249 ~~~~~~~~~vLD~g~g~-G~~~~~l~~-~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~ 324 (402)
.+..|.. ||=+|||. |.++..+++ .|+ .+ +.++ .++.++.+.+-|.-..+....+...... +.||+++-
T Consensus 27 ~~~~G~~--VlI~GaG~vG~~a~qlak~~Ga--~~---i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 27 QAGPGKK--VGVVGIGGLGHMGIKLAHAMGA--HV---VAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp TCCTTCE--EEEECCSHHHHHHHHHHHHTTC--EE---EEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred CCCCCCE--EEEeccchHHHHHHHHhhcccc--cc---hhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeee
Confidence 3444543 66678875 556666665 465 33 2333 3455677777776333322111111122 57998775
Q ss_pred ccccccccccCCHHHHHHHhhhhccCCcEEEEE
Q 015704 325 AGLFSVESKRCNMSTIMLEMDRMLRPGGHVYIR 357 (402)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~e~~RvLrpgG~~~~~ 357 (402)
.- . -...+....++|+|||.+++-
T Consensus 100 ~~-----g----~~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 100 TV-----A----APHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp CC-----S----SCCCHHHHHTTEEEEEEEEEC
T ss_pred ee-----e----cchhHHHHHHHHhcCCEEEEe
Confidence 41 1 134567778999999999986
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.42 E-value=1.6 Score=34.27 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=64.6
Q ss_pred eEEeccccc-h-HHHHHHhhcCCCceEEEeccCC-CCCChhhHHhcCcccccccCCCCCCCCC-CcccEEEEcccccccc
Q 015704 257 NVLDMRAGF-G-GFAAALIEQKFDCWVMNVVPVS-GFNTLPVIYDRGLIGVMHDWCEPFDTYP-RTYDLLHAAGLFSVES 332 (402)
Q Consensus 257 ~vLD~g~g~-G-~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~~~~rg~~~~~~~~~~~~~~~~-~sfD~v~~~~~~~~~~ 332 (402)
+|+=+|||. | ++|..|.+.|.++ .|...| +...++.+.+.|.+...-... .... ...|+|+.. . +
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~---~I~~~D~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~dlIila---~--p 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKG---KIYGYDINPESISKAVDLGIIDEGTTSI---AKVEDFSPDFVMLS---S--P 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCS---EEEEECSCHHHHHHHHHTTSCSEEESCG---GGGGGTCCSEEEEC---S--C
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCe---EEEEEECChHHHHHHHHhhcchhhhhhh---hhhhcccccccccc---C--C
Confidence 467789986 3 4677888887432 455556 466778888888754332211 1112 467888876 1 1
Q ss_pred ccCCHHHHHHHhhhhccCCcEEEEEeC--hhhHHHHHHHHHh
Q 015704 333 KRCNMSTIMLEMDRMLRPGGHVYIRDS--IDVMDELQEIGKA 372 (402)
Q Consensus 333 ~~~~~~~~l~e~~RvLrpgG~~~~~~~--~~~~~~~~~~~~~ 372 (402)
......++.|+...++|+-.++-.-+ ..+.+.+++.+..
T Consensus 72 -~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~ 112 (171)
T d2g5ca2 72 -VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK 112 (171)
T ss_dssp -HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred -chhhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 12346889999999999866654433 4556666665443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.06 E-value=1.3 Score=35.31 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=53.8
Q ss_pred CCCCeEEEECC--ccchhHHHHccC---CceEEeCCccchHHHHHHHHHHcCCCcEEEeccccCCC------CCCCCeeE
Q 015704 9 RLLRVVMDAGC--GVASFGAYLLPR---NVITMSIAPKDVHENQIQFALERGAPAMVAAFATRRLP------YPSQAFDL 77 (402)
Q Consensus 9 ~~~~~VLDiGc--G~G~~~~~L~~~---~v~~vdi~~~~~~~a~~~~a~~~~~~~~~~~~d~~~lp------~~~~sfDl 77 (402)
+++.+||=.|. |.|.++..++.. .++++.-+ ....+.+++.+....+...+ +++. .....||+
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~-----~~~~~~l~~~Ga~~vi~~~~-~~~~~~v~~~t~~~g~d~ 97 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS-----DAKREMLSRLGVEYVGDSRS-VDFADEILELTDGYGVDV 97 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS-----HHHHHHHHTTCCSEEEETTC-STHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeecc-----cccccccccccccccccCCc-cCHHHHHHHHhCCCCEEE
Confidence 45678998773 345666666654 45555433 23346677666554332211 1110 12457999
Q ss_pred EEecCcccccccChHHHHHHHHHhcCCCeEEEEE
Q 015704 78 IHCSRCRINWTRDDGILLLEVNRMLRAGGYFAWA 111 (402)
Q Consensus 78 I~s~~~~~~~~~d~~~~l~e~~r~LkpgG~li~~ 111 (402)
|+.... ...++++.++|+++|.++..
T Consensus 98 v~d~~g--------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 98 VLNSLA--------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEECCC--------THHHHHHHHTEEEEEEEEEC
T ss_pred EEeccc--------chHHHHHHHHhcCCCEEEEE
Confidence 996422 24678889999999999886
|