Citrus Sinensis ID: 015751

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-

MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLKSKEITWPVSLD

ccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEEEEEEEccccEEcccccEEEEEEcEEEEEEEEEEEEEccEEccEEEccccEEEEEEcEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccccEEEEEEEEEEEEcccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHcccccEEEcccccccccccccHHccccHHHccccccccEEEEEEccccEEEEEEccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEcccc

ccccccHHHHHHHHHHHHHHHHHcHHHcccccccEEEEEEcHHHHHHHHHHHHHHHHHHHcccccccccccEEEcEEEEEEEEEEEEEEEEEEcccccEEccccEEEEEEEcEEEEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEEcccccEEEEEcccccEEcEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEEcccccccccccEEEcEEEEEEccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEccccccEEEEEEEEEEEEEEEEEEEc

mgcfikfssPAILFMFLSLLliptsahvqvneGGYISAVISKKGLDFFKNYLInkatssiiplelpdiekskkiplIGKVHMALSNIIIYSVEidssyvetgdpdllLAVSgatadcgmnweysygswllptisdsgaATVLVEGLEVGLTVSLKEQGGIVKVILVDCgshvrdisikvDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFqslpkqipvsdiasmntsfvrspvlsdssvEVEINGLFTAISGTSMLNYYHkgfessascsspakmigIQLNENVFSSGALVYFNANRLhwiiddipeksvlntsgwrhiipqlytqypndgmnlyisvtsppkihvsehdiggtidldmtinvldsseviPVACISLkskeitwpvsld

MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKAtssiiplelpdieKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTvslkeqggIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRspvlsdssvEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACislkskeitwpvsld

MGCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAAtvlveglevgltvslKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLKSKEITWPVSLD

**CFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLKSKEITWP****

********SPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNY*****************IGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLKSKEITWPVSL*

*GCFIKFSSPAILFMFLSLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISLKSKEITWPVSLD

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		401	2.2.26 [Sep-21-2011]
Q9MAU5		488	Putative BPI/LBP family p	yes	no	0.885	0.727	0.488	1e-102
Q8VYC2		515	Putative BPI/LBP family p	no	no	0.930	0.724	0.425	9e-83
P17213		487	Bactericidal permeability	yes	no	0.850	0.700	0.227	8e-18
P18428		481	Lipopolysaccharide-bindin	no	no	0.835	0.696	0.241	4e-16
Q2TBI0		481	Lipopolysaccharide-bindin	yes	no	0.820	0.683	0.218	2e-15
Q6AXU0		482	Bactericidal permeability	yes	no	0.877	0.730	0.216	2e-15
Q28739		445	Bactericidal permeability	no	no	0.837	0.755	0.228	7e-15
P17453		482	Bactericidal permeability	no	no	0.877	0.730	0.234	4e-14
Q61805		481	Lipopolysaccharide-bindin	yes	no	0.788	0.656	0.226	2e-13
P17454		482	Lipopolysaccharide-bindin	no	no	0.865	0.719	0.202	4e-12

>sp\|Q9MAU5\|Y1049_ARATH Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1	Back alignment and function desciption

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/356 (48%), Positives = 254/356 (71%), Gaps = 1/356 (0%)

Query: 35  YISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEI 94
           + S ++S+ GLDF KN L+NKA +SIIPL++P IEKS KIP +G + + +SN+ IY +++
Sbjct: 28  FTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKSMKIPFLGGIDVVVSNLTIYELDV 87

Query: 95  DSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLP-TISDSGAATVLVEGLEVGLTVS 153
            SSYV+ G+  +++  SG T +  MNW YSY +WL P  ISD G A+V V+G+E+GL++ 
Sbjct: 88  ASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPPIEISDQGIASVQVQGMEIGLSLG 147

Query: 154 LKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGKIKSAVESAVTKKISEL 213
           LK   G +K+ L +CG HV DI+I+++GGASW YQ +  AF+ +I S+VES + KK++E 
Sbjct: 148 LKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVESTIAKKLTEG 207

Query: 214 ITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYHK 273
           ++ LDS  QSLPK+IPV D A +N +F   P+L +SS+  EI+GLFT      +L  + K
Sbjct: 208 VSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETNQVLKSFFK 267

Query: 274 GFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGWRHIIP 333
              S   C   +KM+GI ++E VF+S A +Y+NA+ + W++D IPE+S+LNT+ WR IIP
Sbjct: 268 KSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNTARWRFIIP 327

Query: 334 QLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVLDSSEVIPVACISL 389
           QLY +YPN  MNL IS++SPP + +SE  +G  ++ D+ INVLD+++VIPVACISL
Sbjct: 328 QLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVACISL 383

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8VYC2\|Y2070_ARATH Putative BPI/LBP family protein At3g20270 OS=Arabidopsis thaliana GN=At3g20270 PE=2 SV=1	Back alignment and function description

>sp\|P17213\|BPI_HUMAN Bactericidal permeability-increasing protein OS=Homo sapiens GN=BPI PE=1 SV=4	Back alignment and function description

>sp\|P18428\|LBP_HUMAN Lipopolysaccharide-binding protein OS=Homo sapiens GN=LBP PE=1 SV=3	Back alignment and function description

>sp\|Q2TBI0\|LBP_BOVIN Lipopolysaccharide-binding protein OS=Bos taurus GN=LBP PE=2 SV=1	Back alignment and function description

>sp\|Q6AXU0\|BPI_RAT Bactericidal permeability-increasing protein OS=Rattus norvegicus GN=Bpi PE=2 SV=1	Back alignment and function description

>sp\|Q28739\|BPI_RABIT Bactericidal permeability-increasing protein (Fragment) OS=Oryctolagus cuniculus GN=BPI PE=2 SV=1	Back alignment and function description

>sp\|P17453\|BPI_BOVIN Bactericidal permeability-increasing protein OS=Bos taurus GN=BPI PE=2 SV=2	Back alignment and function description

>sp\|Q61805\|LBP_MOUSE Lipopolysaccharide-binding protein OS=Mus musculus GN=Lbp PE=2 SV=2	Back alignment and function description

>sp\|P17454\|LBP_RABIT Lipopolysaccharide-binding protein OS=Oryctolagus cuniculus GN=LBP PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		401
224056407		470	predicted protein [Populus trichocarpa]	0.957	0.817	0.579	1e-123
255580770		493	Lipopolysaccharide-binding protein precu	0.930	0.756	0.568	1e-117
224131712		492	predicted protein [Populus trichocarpa]	0.910	0.741	0.524	1e-110
356552791		491	PREDICTED: putative BPI/LBP family prote	0.892	0.729	0.552	1e-109
225447199		498	PREDICTED: putative BPI/LBP family prote	0.945	0.761	0.515	1e-109
359494081		501	PREDICTED: putative BPI/LBP family prote	0.965	0.772	0.508	1e-109
147854318		558	hypothetical protein VITISV_009101 [Viti	0.965	0.693	0.511	1e-108
356501578		480	PREDICTED: putative BPI/LBP family prote	0.892	0.745	0.538	1e-106
359807236		441	uncharacterized protein LOC100808142 pre	0.950	0.863	0.496	1e-103
356569730		493	PREDICTED: putative BPI/LBP family prote	0.952	0.774	0.502	1e-101

>gi\|224056407\|ref\|XP_002298841.1\| predicted protein [Populus trichocarpa] gi\|222846099\|gb\|EEE83646.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/392 (57%), Positives = 296/392 (75%), Gaps = 8/392 (2%)

Query: 12  ILFMFLSLLLIPTSA--HVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIE 69
           + F+ + L+L P +A   +Q NE GYIS ++S KG+DF K+ LINKA S+IIPL+LPDIE
Sbjct: 5   LFFLVVCLVLAPAAAAHDLQSNEEGYISLLLSNKGVDFAKDVLINKAVSTIIPLQLPDIE 64

Query: 70  KSKKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWL 129
           KS KIPLIGKVHM LSNI IYSV I SSYVETG+P L+L  SGATA   M W YSY +WL
Sbjct: 65  KSVKIPLIGKVHMILSNITIYSVNISSSYVETGNPGLVLVASGATASLSMKWAYSYSTWL 124

Query: 130 LPTISDSGAATVLVEGLEVGLTVSLKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQA 189
           +  ISDSG A+V V+G+EVGLTV+ KEQGG +++ L+DCG HV+DI+IK++GGASWLYQ 
Sbjct: 125 I-VISDSGDASVQVKGMEVGLTVAFKEQGGTLELSLLDCGCHVQDITIKLNGGASWLYQG 183

Query: 190 LFEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDS 249
           + +AF+G I SAVE+A++KKI E I KLDS+ QS+PKQIP+  +A++N +FV SPVLS+S
Sbjct: 184 IVDAFQGSIGSAVENAISKKIKEEIVKLDSLLQSIPKQIPIDHVAALNATFVDSPVLSNS 243

Query: 250 SVEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANR 309
            +E+EINGLFTA    ++   Y+KG +SS   + PAKMIGI L+E+VF++  LVY NA  
Sbjct: 244 FIELEINGLFTATDDFAVPRNYNKGKKSSLFYNCPAKMIGISLHEDVFNTAGLVYLNAGC 303

Query: 310 LHWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDL 369
           +HWI+D     S LNT+ W++I PQLY QYPN  M+L IS TS P + ++++ I  TI L
Sbjct: 304 MHWIVDKSLNHSFLNTAAWKYIYPQLYLQYPNHDMSLNISATSSPAVKIAKNGINVTIYL 363

Query: 370 DMTINVLDSSEVIPVACISLK-----SKEITW 396
           D+T+NVLD S+VIPVACISL+     S +I W
Sbjct: 364 DVTVNVLDDSKVIPVACISLEINASCSPQILW 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255580770\|ref\|XP_002531206.1\| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis] gi\|223529208\|gb\|EEF31183.1\| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224131712\|ref\|XP_002321159.1\| predicted protein [Populus trichocarpa] gi\|222861932\|gb\|EEE99474.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356552791\|ref\|XP_003544746.1\| PREDICTED: putative BPI/LBP family protein At3g20270-like [Glycine max]	Back alignment and taxonomy information

>gi\|225447199\|ref\|XP_002272020.1\| PREDICTED: putative BPI/LBP family protein At3g20270 [Vitis vinifera] gi\|297739241\|emb\|CBI28892.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359494081\|ref\|XP_002277143.2\| PREDICTED: putative BPI/LBP family protein At3g20270-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147854318\|emb\|CAN83425.1\| hypothetical protein VITISV_009101 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356501578\|ref\|XP_003519601.1\| PREDICTED: putative BPI/LBP family protein At3g20270-like [Glycine max]	Back alignment and taxonomy information

>gi\|359807236\|ref\|NP_001241365.1\| uncharacterized protein LOC100808142 precursor [Glycine max] gi\|255641286\|gb\|ACU20920.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|356569730\|ref\|XP_003553049.1\| PREDICTED: putative BPI/LBP family protein At3g20270-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		401
TAIR\|locus:2010592		488	AT1G04970 [Arabidopsis thalian	0.932	0.766	0.453	4e-90
TAIR\|locus:2092334		722	AT3G20270 [Arabidopsis thalian	0.940	0.522	0.418	1.8e-71
UNIPROTKB\|I3L5U6		481	LBP "Uncharacterized protein"	0.885	0.738	0.227	1.4e-20
UNIPROTKB\|F1Q3I0		483	F1Q3I0 "Uncharacterized protei	0.825	0.685	0.238	2.6e-18
UNIPROTKB\|P18428		481	LBP "Lipopolysaccharide-bindin	0.925	0.771	0.244	3.3e-18
UNIPROTKB\|I3LFA0		483	BPI "Uncharacterized protein"	0.922	0.766	0.235	1e-17
UNIPROTKB\|F1Q3J3		485	BPI "Uncharacterized protein"	0.930	0.769	0.218	3.1e-17
UNIPROTKB\|P17213		487	BPI "Bactericidal permeability	0.842	0.694	0.222	3.1e-17
UNIPROTKB\|F1MNN7		481	LBP "Lipopolysaccharide-bindin	0.912	0.760	0.217	1.5e-16
UNIPROTKB\|Q2TBI0		481	LBP "Lipopolysaccharide-bindin	0.912	0.760	0.214	7.6e-16

TAIR\|locus:2010592 AT1G04970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 172/379 (45%), Positives = 250/379 (65%)

Query:    13 LFMFL-SLLLIPTSAHVQVNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKS 71
             LF+ L S   +P+      +   + S ++S+ GLDF KN L+NKA +SIIPL++P IEKS
Sbjct:     8 LFLLLPSFFFLPSQTQ---STDSFTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKS 64

Query:    72 KKIPLIGKVHMALSNIIIYSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLP 131
              KIP +G + + +SN+ IY +++ SSYV+ G+  +++  SG T +  MNW YSY +WL P
Sbjct:    65 MKIPFLGGIDVVVSNLTIYELDVASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPP 124

Query:   132 T-ISDSGAAXXXXXXXXXXXXXXXKEQGGIVKVILVDCGSHVRDISIKVDGGASWLYQAL 190
               ISD G A               K   G +K+ L +CG HV DI+I+++GGASW YQ +
Sbjct:   125 IEISDQGIASVQVQGMEIGLSLGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGM 184

Query:   191 FEAFEGKIKSAVESAVTKKISELITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSS 250
               AF+ +I S+VES + KK++E ++ LDS  QSLPK+IPV D A +N +F   P+L +SS
Sbjct:   185 VNAFKDQIGSSVESTIAKKLTEGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSS 244

Query:   251 VEVEINGLFTAISGTSMLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRL 310
             +  EI+GLFT      +L  + K   S   C   +KM+GI ++E VF+S A +Y+NA+ +
Sbjct:   245 ITFEIDGLFTKGETNQVLKSFFKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFV 304

Query:   311 HWIIDDIPEKSVLNTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLD 370
              W++D IPE+S+LNT+ WR IIPQLY +YPN  MNL IS++SPP + +SE  +G  ++ D
Sbjct:   305 QWVVDKIPEQSLLNTARWRFIIPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNAD 364

Query:   371 MTINVLDSSEVIPVACISL 389
             + INVLD+++VIPVACISL
Sbjct:   365 LVINVLDANQVIPVACISL 383

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR\|locus:2092334 AT3G20270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L5U6 LBP "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q3I0 F1Q3I0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|P18428 LBP "Lipopolysaccharide-binding protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LFA0 BPI "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q3J3 BPI "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|P17213 BPI "Bactericidal permeability-increasing protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MNN7 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2TBI0 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		401
cd00025		223	cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bac	1e-33
pfam01273		163	pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family,	1e-18
smart00328		225	smart00328, BPI1, BPI/LBP/CETP N-terminal domain	3e-18
cd00026		200	cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bac	1e-17
smart00329		202	smart00329, BPI2, BPI/LBP/CETP C-terminal domain	9e-09
pfam02886		238	pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family	5e-07
cd00264		208	cd00264, BPI, BPI/LBP/CETP domain; Bactericidal pe	4e-05

>gnl\|CDD\|237992 cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

 Score =  124 bits (313), Expect = 1e-33
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 9/228 (3%)

Query: 36  ISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEID 95
             A +S KGL F K   +    + +  L++PDI  + KI L+GK  + LSN  I  +++ 
Sbjct: 2   AVARLSPKGLKFAKQQGLKVLQAELEKLQIPDILGAMKIKLLGKGRVGLSNKEIQELKLP 61

Query: 96  SSYVETGDPDLL-LAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSL 154
           SS ++  +   L L++S  +      W+Y+Y       I D G   + VEG+ +   + L
Sbjct: 62  SSSIKLVEVKGLDLSISNVSIGLSGVWKYNY-----RFILDGGNVELSVEGMNIQADLRL 116

Query: 155 K-EQGGIVKVILVDCGSHVRDISIKVDGGASWLYQALFEAFEGK-IKSAVESAVTKKISE 212
             +  G  K+ L DC S V  + + + G   WL +      E    K           + 
Sbjct: 117 GRDPSGRPKLSLSDCSSTVGSLRVHLGGSLGWLAKLFMNFIESLLKKVLKGQLCPVIDAS 176

Query: 213 LITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFT 260
           L++ L+S    LPK  PV   A ++ S    PVL+ S ++ +I G F 
Sbjct: 177 LVSMLES-LLQLPKLPPVDSNAGVDYSLTSPPVLTASYLDSDIKGTFQ 223

; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide. Length = 223

>gnl\|CDD\|216404 pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family, N-terminal domain	Back alignment and domain information

>gnl\|CDD\|214622 smart00328, BPI1, BPI/LBP/CETP N-terminal domain	Back alignment and domain information

>gnl\|CDD\|237993 cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>gnl\|CDD\|128624 smart00329, BPI2, BPI/LBP/CETP C-terminal domain	Back alignment and domain information

>gnl\|CDD\|202449 pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		401
KOG4160		492	consensus BPI/LBP/CETP family protein [Defense mec	100.0
cd00025		223	BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal	100.0
smart00328		225	BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal	100.0
PF01273		164	LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal	99.96
PF02886		238	LBP_BPI_CETP_C: LBP / BPI / CETP family, C-termina	99.95
cd00264		208	BPI BPI/LBP/CETP domain; Bactericidal permeability	99.91
smart00329		202	BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal	99.91
cd00026		200	BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal	99.88
cd00264		208	BPI BPI/LBP/CETP domain; Bactericidal permeability	98.96
PF06585		248	JHBP: Haemolymph juvenile hormone binding protein	98.54
smart00700		225	JHBP Juvenile hormone binding protein domains in i	98.44
PF14613		164	DUF4449: Protein of unknown function (DUF4449)	93.92

>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]	Back alignment and domain information

Probab=100.00  E-value=1.2e-50  Score=414.39  Aligned_cols=350  Identities=27%  Similarity=0.413  Sum_probs=315.3

Q ss_pred             CCceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeecceeeEEEEEecEEEEEEEeCCceeEe-CCCeEEEEE
Q 015751           32 EGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAV  110 (401)
Q Consensus        32 ~~pGi~~rit~~gL~y~~~~~~~~l~~~l~~~~iPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~~-~~~gi~l~i  110 (401)
                      .+||+++|++++|++|+++.+...+++++.++++||+.++++.+++|++.|.+++++|.++..+.+.+++ +..++.|++
T Consensus        26 ~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i~i~~~~~~s~~~~~~~~~~~~~~~  105 (492)
T KOG4160|consen   26 HNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSIKILRFSVPSSQLSLVPQAGLSWSI  105 (492)
T ss_pred             cCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecceeEEeccccccceeecCCceEEEEE
Confidence            6788999999999999999999999999999999999999999888999999999999999999999999 778999999


Q ss_pred             eCcEEEEEEEEEEEEccccceeeeeeeEEEEEEecEEEEEEEEEE-e-cCCeeEEEEeeeeEEeccEEEEEECCchhhHH
Q 015751          111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-E-QGGIVKVILVDCGSHVRDISIKVDGGASWLYQ  188 (401)
Q Consensus       111 ~~~~i~l~g~w~~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~-~-~~G~~~v~~~~C~~~i~~v~i~~~g~~s~l~n  188 (401)
                      +++++.+.++|++ .. |+   ...+|.+++.++|+++.+.+.+. + .+|++.++...|.+.++++++.+++-.+|+++
T Consensus       106 ~n~~~~~~~~~~~-~~-~~---~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~C~~~~~~l~~~~~~~~~~l~~  180 (492)
T KOG4160|consen  106 TNANISLSGRWKA-RT-RF---LALGGQVDASVKGMDIQINLSLGSDIGDGKPAVSDSSCSAAISDLHVQMGSLASWLIQ  180 (492)
T ss_pred             eeEEEEEeeeeEe-EE-EE---EecCCeeEEEeecceEEEeeeeeccCCCCcceeeeecceeEeeeeEeecCCCcHHHHH
Confidence            9999999999999 43 33   24459999999999999999998 6 78999999999999999999888855999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEEe-ccCcc
Q 015751          189 ALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTA-ISGTS  266 (401)
Q Consensus       189 ~f~~~~~~~I~~~l~~~iC~~I~~~i-~~ln~~L~~~p~~~~l~~~~~idysL~~~P~it~~~i~~~l~G~~~~-~~~~~  266 (401)
                      .|.+.+++.||..++.++|+.+++.+ ..++.++++.|+..++|+.+.+||+++++|.+|++++|++++|++++ .++..
T Consensus       181 ~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~~P~~t~~~i~l~~~G~i~~~~~~~~  260 (492)
T KOG4160|consen  181 LFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLGPPAITSSYIELDLKGEIFYSLGQVT  260 (492)
T ss_pred             HHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEeccCCceecceEEEeeeeeEEeccCCCC
Confidence            99999999999999999999999999 58999999999999999999999999999999999999999999999 55544


Q ss_pred             ccCCCCCCCCCc-cCCCCCCceEEEEEchhhhhhHHHHHHhcCeeeEEe-ccc-CCcc--ccccch--hhhchhhhhhcC
Q 015751          267 MLNYYHKGFESS-ASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII-DDI-PEKS--VLNTSG--WRHIIPQLYTQY  339 (401)
Q Consensus       267 ~~p~~~~~~p~~-~~~~~~~~Ml~l~lSey~~NS~~~~~~~~g~L~~~i-~~i-p~~~--~LnTs~--~g~~iP~L~~~y  339 (401)
                      .+ +   ..|.. ..++++++|+++|+|||++||++++||++|.|++++ ++. |.++  .++|+.  +|+++|+|+++|
T Consensus       261 ~~-~---~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~g~~lp~l~~~~  336 (492)
T KOG4160|consen  261 PP-F---PLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPVDSLKLLTTSGFCIGDLLPELAEQY  336 (492)
T ss_pred             Cc-c---cCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCcccccccccceeechhhhHHHHHHC
Confidence            33 2   22333 334457999999999999999999999999999999 444 4444  466664  677999999999


Q ss_pred             CCCceEEEEeeCCCCEEEEEeCcEEEEEEEEEEEEEe-CCCceeeEEEEEee
Q 015751          340 PNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVL-DSSEVIPVACISLK  390 (401)
Q Consensus       340 Pn~~~~l~v~~~~~P~v~i~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~  390 (401)
                      ||+++++++++.++|.|.+++++..+...+.+.+++. ++++.++++++.++
T Consensus       337 Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~  388 (492)
T KOG4160|consen  337 PNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVD  388 (492)
T ss_pred             CCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEE
Confidence            9999999999999999999999999999999998855 79999999998887

>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>smart00328 BPI1 BPI/LBP/CETP N-terminal domain	Back alignment and domain information

>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins	Back alignment and domain information

>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins	Back alignment and domain information

>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>smart00329 BPI2 BPI/LBP/CETP C-terminal domain	Back alignment and domain information

>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP)	Back alignment and domain information

>smart00700 JHBP Juvenile hormone binding protein domains in insects	Back alignment and domain information

>PF14613 DUF4449: Protein of unknown function (DUF4449)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		401
1bp1_A		456	Crystal Structure Of Bpi, The Human Bactericidal Pe		7e-16
1ewf_A		456	The 1.7 Angstrom Crystal Structure Of Bpi Length =		2e-15

>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal Permeability-Increasing Protein Length = 456

Back alignment and structure

Iteration: 1

Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 76/344 (22%), Positives = 153/344 (44%), Gaps = 15/344 (4%) Query: 30 VNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIII 89 VN G + IS+KGLD+ + +++PD S KI +GK H + ++ I Sbjct: 1 VNPG--VVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDI 58 Query: 90 YSVEIDSSYVETGDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAAXXXXXXXXXX 149 ++ SS + P++ L S + A+ ++ ++ L +S + Sbjct: 59 REFQLPSSQISM-VPNVGLKFSISNANIKISGKWKAQKRFL-KMSGNFDLSIEGMSISAD 116 Query: 150 XXXXXKEQGGIVKVILVDCGSHVRDISIKV-DGGASWLYQALFEAFEGKIKSAVESAVTK 208 G + C SH+ + + + WL Q + E +++ + S V + Sbjct: 117 LKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCE 176 Query: 209 KISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSM 267 K++ ++ KL FQ+LP + +A +N V P + +++V++ G F + + + Sbjct: 177 KVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNP 236 Query: 268 LNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDD--IPEKS--VL 323 + E A+ +M+ + L++ F++ LVY A L + D IP++S L Sbjct: 237 PPFAPPVMEFPAAHD---RMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRL 293 Query: 324 NTSGWRHIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTI 367 T + +P++ ++PN + +++S ++PP H+S G T Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPP--HLSVQPTGLTF 335

PyMOL of 1bp1

>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi Length = 456

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		401
2obd_A		476	Cholesteryl ester transfer protein; lipid transfer	1e-57
1ewf_A		456	BPI, bactericidal/permeability-increasing protein;	2e-54
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens} Length = 476	Back alignment and structure

 Score =  194 bits (494), Expect = 1e-57
 Identities = 66/362 (18%), Positives = 126/362 (34%), Gaps = 13/362 (3%)

Query: 36  ISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEID 95
           I   I+K  L    +       ++      PDI   K + L+G+V   L NI I  + I 
Sbjct: 11  IVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSIA 70

Query: 96  SSYVETGDPD-LLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSL 154
           SS VE  +   + +++   +       +Y Y +     I  S    +    +++ +   L
Sbjct: 71  SSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWWLGIDQSIDFEI-DSAIDLQINTQL 129

Query: 155 KEQGGIVKVILVDCGSHVRDISIKVDGG--ASWLYQALFEAFEGKIKSAVESAVTKKISE 212
               G V+    DC      + + + G     W+ Q         +K  ++  + K+I+ 
Sbjct: 130 TADSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEINV 189

Query: 213 LITKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTSMLNYYH 272
           +   +    Q+    I       ++ S    PV++ S +E    G F     +  L    
Sbjct: 190 ISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPLP- 248

Query: 273 KGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWIIDDIPEKSVLNTSGW---R 329
                S +    ++M+    +E VF S A V F   RL   +     K+VL T G+   +
Sbjct: 249 ---TFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTNQ 305

Query: 330 HIIPQLYTQYPNDGMNLYISVTSPPKIHVSEHDIGGTIDLDMTINV-LDSSEVIPVACIS 388
            I  ++   +P+    + +     PKI      +     + +         +        
Sbjct: 306 EIFQEVVGGFPSQ-AQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRPDQQHSVAYTFE 364

Query: 389 LK 390
             
Sbjct: 365 ED 366

PyMOL of 2obd

>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A* Length = 456	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		401
1ewf_A		456	BPI, bactericidal/permeability-increasing protein;	100.0
2obd_A		476	Cholesteryl ester transfer protein; lipid transfer	100.0
3uv1_A		196	DER F 7 allergen; super-roll; 2.00A {Dermatophagoi	99.16
3e8t_A		220	Takeout 1, takeout-like protein 1; transport prote	98.41
3h4z_A		568	Maltose-binding periplasmic protein fused with Al	97.73
2rck_A		225	JuvenIle hormone binding protein; hemolymph, JHBP-	97.21
2rqf_A		227	HJHBP, hemolymph juvenIle hormone binding protein;	95.57

>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A*	Back alignment and structure

Probab=100.00  E-value=1.4e-68  Score=545.41  Aligned_cols=351  Identities=21%  Similarity=0.377  Sum_probs=331.7

Q ss_pred             CCceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeecceeeEEEEEecEEEEEEEeCCceeEe-CCCeEEEEE
Q 015751           32 EGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAV  110 (401)
Q Consensus        32 ~~pGi~~rit~~gL~y~~~~~~~~l~~~l~~~~iPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~~-~~~gi~l~i  110 (401)
                      ++||+++|+|++||+|+++++.+++++++++++|||++++++++++|++.|++++++|+++++|.+++++ |++|+++.+
T Consensus         1 ~~pGi~vrit~~gL~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~g~~~~~ls~i~I~~~~~~~~~l~~~p~~gi~l~i   80 (456)
T 1ewf_A            1 VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSI   80 (456)
T ss_dssp             CCCSEEEEEEHHHHHHHHHHHHHHHHHHHTTCCCCCEEEECSCSSSSSCEEEEEEEEEEEEECCCEEEEEETTTEEEEEE
T ss_pred             CCCcEEEEECHHHHHHHHHHHHHHHHHHhhcCCCCCccCceeccccceEEEEEEEEEEEEEecCCceEEECCCCEEEEEE
Confidence            3799999999999999999999999999999999999999999988999999999999999999999999 999999999


Q ss_pred             eCcEEEEEEEEEEEEccccceeeeeeeEEEEEEecEEEEEEEEEE-ec-CCeeEEEEeeeeEEeccEEEEEECC-chhhH
Q 015751          111 SGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-EQ-GGIVKVILVDCGSHVRDISIKVDGG-ASWLY  187 (401)
Q Consensus       111 ~~~~i~l~g~w~~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~-~~-~G~~~v~~~~C~~~i~~v~i~~~g~-~s~l~  187 (401)
                      ++++++++|+|+|++  |+   ++++|.+++.++|+++++.++++ +. +|+|+++..+|++++++++++++|+ .+|++
T Consensus        81 ~~~~~~l~~~~~~~~--~~---i~~~G~~~~~v~~v~i~~~~~l~~~~~~G~~~v~~~~C~~~~~~~~i~~~g~~~~~l~  155 (456)
T 1ewf_A           81 SNANIKISGKWKAQK--RF---LKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLI  155 (456)
T ss_dssp             EEEEEEEEEEEEEEE--TT---EEEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHHH
T ss_pred             eCCcEEEEEEEEEEE--EE---EeeeeEEEEEEeeEEEEEEEEEeecCCCCceEEEEecCceEeceEEEEEeCCchHHHH
Confidence            999999999999997  54   79999999999999999999999 77 9999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcccccceeeeeeeeecCCeeecceeEEeEeEEEEeccCcc
Q 015751          188 QALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSDSSVEVEINGLFTAISGTS  266 (401)
Q Consensus       188 n~f~~~~~~~I~~~l~~~iC~~I~~~i-~~ln~~L~~~p~~~~l~~~~~idysL~~~P~it~~~i~~~l~G~~~~~~~~~  266 (401)
                      |+|.+.+++.||+.+++++|++|++.+ +++|++|+++|..+++|+.+.+||+++++|.+++++++++++|+|++.+++.
T Consensus       156 n~f~~~i~~~i~~~l~~~iC~~i~~~v~~~ln~~L~~lp~~~~id~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~~~  235 (456)
T 1ewf_A          156 QLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHN  235 (456)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSCSEEECSSSCEEECCBSSCCEECSSEEEEEECCEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceeecCceEEEEEEeecCCcccccEEEEEEEEEEEeCCCCC
Confidence            999999999999999999999999977 7799999999999999999999999999999999999999999999999888


Q ss_pred             ccCCCCCCCCCccCCCCCCceEEEEEchhhhhhHHHHHHhcCeeeEEe--cccCCcc--ccccchhhhchhhhhhcCCCC
Q 015751          267 MLNYYHKGFESSASCSSPAKMIGIQLNENVFSSGALVYFNANRLHWII--DDIPEKS--VLNTSGWRHIIPQLYTQYPND  342 (401)
Q Consensus       267 ~~p~~~~~~p~~~~~~~~~~Ml~l~lSey~~NS~~~~~~~~g~L~~~i--~~ip~~~--~LnTs~~g~~iP~L~~~yPn~  342 (401)
                      .+||.  +++++. +++.++|+++++|||++||++|+||++|+|++++  +++|+.+  +|||+|++.++||++++|||+
T Consensus       236 ~~p~~--p~~~~~-p~~~~~m~~~~ls~~~~nS~l~~~~~~g~l~~~it~~~ip~~~~~~L~T~~~~~~iP~l~~~yP~~  312 (456)
T 1ewf_A          236 PPPFA--PPVMEF-PAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNM  312 (456)
T ss_dssp             CCSSC--CCCCCC-CCCCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEEGGGSCTTCSCCSBHHHHHTTSSSHHHHSTTC
T ss_pred             CCCCC--CCCcCC-CCCCCcEEEEEecHHHHHHHHHHHHhCCcceEEechhhCCCcCCCeeeehhhhhhchHHHHhCCCC
Confidence            77752  233332 4456899999999999999999999999999999  6899965  899999999999999999999


Q ss_pred             ceEEEEeeCCCCEEEEEeCcEEEEEEEEEEEEEe-CCCceeeEEEEEee
Q 015751          343 GMNLYISVTSPPKIHVSEHDIGGTIDLDMTINVL-DSSEVIPVACISLK  390 (401)
Q Consensus       343 ~~~l~v~~~~~P~v~i~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~  390 (401)
                      .++++++++++|.|+++++++++++.+.+++++. |+++.+++|+++++
T Consensus       313 ~l~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~~~~~~~~~~~l~~l~~~  361 (456)
T 1ewf_A          313 KIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMH  361 (456)
T ss_dssp             BEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eEEEEEEeCCCCEEEEecCCEEEEEEEEEEEEEECCCCceeeEEEEEEE
Confidence            9999999999999999999999999999999977 78899999999976

PyMOL of 1ewf

>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens}	Back alignment and structure

>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}	Back alignment and structure

>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*	Back alignment and structure

>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}	Back alignment and structure

>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG; 2.44A {Galleria mellonella}	Back alignment and structure

>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR {Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		401
d1ewfa1		217	d.83.1.1 (A:1-217) Bactericidal permeability-incre	6e-41
d1ewfa2		239	d.83.1.1 (A:218-456) Bactericidal permeability-inc	2e-19

>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 217	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 6e-41
 Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 12/223 (5%)

Query: 30  VNEGGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIII 89
           VN G  +   IS+KGLD+            +  +++PD   S KI  +GK H +  ++ I
Sbjct: 1   VNPG--VVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDI 58

Query: 90  YSVEIDSSYVET-GDPDLLLAVSGATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEV 148
              ++ SS +    +  L  ++S A       W+          +  SG   + +EG+ +
Sbjct: 59  REFQLPSSQISMVPNVGLKFSISNANIKISGKWKAQK-----RFLKMSGNFDLSIEGMSI 113

Query: 149 GLTVSL--KEQGGIVKVILVDCGSHVRDISIKVDGG-ASWLYQALFEAFEGKIKSAVESA 205
              + L      G   +    C SH+  + + +      WL Q   +  E  +++ + S 
Sbjct: 114 SADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQ 173

Query: 206 VTKKISELIT-KLDSIFQSLPKQIPVSDIASMNTSFVRSPVLS 247
           V +K++  ++ +L   FQ+LP    +  +A +N   V  P  +
Sbjct: 174 VCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATT 216

PyMOL of d1ewfa1

>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 239	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		401
d1ewfa1		217	Bactericidal permeability-increasing protein, BPI	100.0
d1ewfa2		239	Bactericidal permeability-increasing protein, BPI	99.96

>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-47  Score=351.73  Aligned_cols=211  Identities=22%  Similarity=0.411  Sum_probs=203.6

Q ss_pred             CceEEEEechhHHHHHHHHHHHHHHhhcCCCCCCCccceeeecceeeEEEEEecEEEEEEEeCCceeEe-CCCeEEEEEe
Q 015751           33 GGYISAVISKKGLDFFKNYLINKATSSIIPLELPDIEKSKKIPLIGKVHMALSNIIIYSVEIDSSYVET-GDPDLLLAVS  111 (401)
Q Consensus        33 ~pGi~~rit~~gL~y~~~~~~~~l~~~l~~~~iPdi~g~~~~~~~G~v~~~ls~i~I~~~~~p~~~v~~-~~~gi~l~i~  111 (401)
                      |||+++|+|+|||+|+++++.++++++++++++||++++++++++|+++|+++|++|+++++|.+++++ |++|+++.++
T Consensus         2 nPGi~vrit~kgL~y~~~~~~~~l~~~l~~i~iPdi~~~~~i~~~G~v~y~ls~i~I~~~~~~~s~l~~~p~~gi~~~is   81 (217)
T d1ewfa1           2 NPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSIS   81 (217)
T ss_dssp             CCSEEEEEEHHHHHHHHHHHHHHHHHHHTTCCCCCEEEECSCSSSSSCEEEEEEEEEEEEECCCEEEEEETTTEEEEEEE
T ss_pred             CCcEEEEECHHHHHHHHHHHHHHHHHHhhcCCCCCccCcccccccceEEEEEEeeEEEEEecCCceeEecCCCeEEEEEe
Confidence            799999999999999999999999999999999999999999988999999999999999999999999 9999999999


Q ss_pred             CcEEEEEEEEEEEEccccceeeeeeeEEEEEEecEEEEEEEEEE-e-cCCeeEEEEeeeeEEeccEEEEEECC-chhhHH
Q 015751          112 GATADCGMNWEYSYGSWLLPTISDSGAATVLVEGLEVGLTVSLK-E-QGGIVKVILVDCGSHVRDISIKVDGG-ASWLYQ  188 (401)
Q Consensus       112 ~~~i~l~g~w~~~~~~~~~P~i~~sG~~~~~v~g~~i~~~~~l~-~-~~G~~~v~~~~C~~~i~~v~i~~~g~-~s~l~n  188 (401)
                      +++++++|+|+|++  |+   ++++|++++.++++++++.++++ + .+|+|+++..+|++++++++++++|| .+|+||
T Consensus        82 ~~~~~l~g~w~~~~--~~---i~~~G~~~~~v~~~~i~~~~~l~~d~~~G~~~v~~~~C~~~i~~v~i~~~gg~~swl~n  156 (217)
T d1ewfa1          82 NANIKISGKWKAQK--RF---LKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQ  156 (217)
T ss_dssp             EEEEEEEEEEEEEE--TT---EEEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHHHH
T ss_pred             cCeEEEEEEEEEEE--EE---EEEeeEEEEEEEEEEEEEEEEEEeeCCCCcEEEEEccCceEeeeEEEEECCCchHHHHH
Confidence            99999999999997  44   79999999999999999999998 6 57999999999999999999999988 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcccccceeeeeeeeecCCeeec
Q 015751          189 ALFEAFEGKIKSAVESAVTKKISELI-TKLDSIFQSLPKQIPVSDIASMNTSFVRSPVLSD  248 (401)
Q Consensus       189 ~f~~~~~~~I~~~l~~~iC~~I~~~i-~~ln~~L~~~p~~~~l~~~~~idysL~~~P~it~  248 (401)
                      +|++.+++.||+.++++||++|++.+ +++|++|+++|+.+|+|+.+.+||+|+++|.+|+
T Consensus       157 ~f~~~i~~~ir~~l~~~iC~~i~~~i~~~ln~~L~~lp~~~~id~~~~idysl~~~P~~ts  217 (217)
T d1ewfa1         157 LFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTA  217 (217)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSCSEEECSSSCEEECCBSSCCEECS
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeeeecCCceEEEEEeeCCCccCC
Confidence            99999999999999999999999999 6799999999999999999999999999999985

PyMOL of d1ewfa1

>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure