Citrus Sinensis ID: 015789

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
Protein Sequence
MQRQTRYMERTSSMSRGKRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKVGLIYIFVSAILLGLCFLQGSFYIRHPLLV
Secondary Structure (PSIPRED)
cccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccEEccccEEccccccEEEEEEEcccccEEccccccccEEEEEEEcccccccccccccHHHHHHccccccccccccccccEEEEEcccEEEccccEEEcccccccccccEEEEEEEccccccccEEEcccccEEEEEccccccccccccccccccEEEcccccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHcccccccEEEEEEEcccccEEEEEcccEEEEEEEEccEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccccccccEEEEcccccEEEEEEEccccEEEcccccccEEEEEEEEEccccccccccccHHHHHHcccccccccccEEEEEEEEEEEccEEEcccEEEEcccccccccEEEEEEEEEccccccEEEEEEEcccEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEccccccEEEEEccEEEEEEEEEccEEEcHHHccHHHHHHHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
mqrqtrymertssmsrgkrslesnedeqperkrpALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLgparlnngraspkriegpdgrnlqLYFRSRlslplftggkvegeqGAAIHVVLVDantghvvtsgpeasVKLDIVVLEgdfnnedddgwtqeeFESHVVKeregkrplltgdLQVTLKegvgtlgdltftdnsswirsRKFRLGLKVASGYCEGIRIreakteaftvkdhrgelykkhyppalnddVWRLekigkdgsfhkrlnnagifsvEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTcvlsgklyvyypedsrnvgvVFNNIYElnglisgeqyfpadalpesqkvGLIYIFVSAILLGLCFLqgsfyirhpllv
Flexible Loop (DISEMBL)
mqrqtrymertssmsrgkrslesnedeqperkrPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALaklgparlnngraspkriegpdgrNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTghvvtsgpeasvKLDIVVLEGDFNNEDDDGWTQEEFEShvvkeregkrplltgdlqvtlkegvgtlgdltftdnsswirsrkfrlglkvasgycegirireakteaftvkdhrgelykkhyppalnddvWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKVGLIYIFVSAILLGLCFLQGSFYIRHPLLV
Low Complexity Region (SEG)
MQRQTRYMERTSSMSRGKRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKVGLIYIFVSAILLGLCFLQGSFYIRHPLLV
Disordered region (IsUnstruct)
************************************ASVIVEALKVDSLQKLCSSLEPILRRVVSEEV****************************NLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNE***GW*****************PLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKVGLIYIFVSAILLGLCFLQGSFYIRHPL**
Disordered Region (DISOPRED)
*******************************************LKVDS******************EVE*A***************************QLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHV***********TGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADAL**S*KVGLIYIFVSAILLGLCFLQGSFYIRHPLLV
Disordered Region (DISEMBL)
*********************************PALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKVGLIYIFVSAILLGLCFLQGSFYIRHPLLV
Disordered Region (DISPRO)
******************************RKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLN***ASPKRI**PDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKVGLIYIFVSAILLGLCFLQGSFYIRHPLLV
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRQTRYMERTSSMSRGKRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKVGLIYIFVSAILLGLCFLQGSFYIRHPLLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
225446126	642	PREDICTED: uncharacterized protein LOC10	0.925	0.576	0.879	0.0
359495503	759	PREDICTED: uncharacterized protein LOC10	0.917	0.483	0.859	0.0
449457137	636	PREDICTED: uncharacterized protein LOC10	0.917	0.577	0.902	0.0
147785125	637	hypothetical protein VITISV_001611 [Viti	0.917	0.576	0.862	0.0
302144195	636	unnamed protein product [Vitis vinifera]	0.917	0.577	0.859	0.0
297735353	628	unnamed protein product [Vitis vinifera]	0.892	0.568	0.891	0.0
356562468	627	PREDICTED: uncharacterized protein LOC10	0.9	0.574	0.861	0.0
224143772	648	predicted protein [Populus trichocarpa]	0.917	0.566	0.851	0.0
356547543	631	PREDICTED: uncharacterized protein LOC10	0.9	0.570	0.855	0.0
224114057	637	predicted protein [Populus trichocarpa]	0.917	0.576	0.818	1e-179

>gi|225446126|ref|XP_002270522.1| PREDICTED: uncharacterized protein LOC100264980 [Vitis vinifera]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/372 (87%), Positives = 354/372 (95%), Gaps = 2/372 (0%)

Query: 1   MQR-QTRYMERTSSMSRGKRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPI 59
           MQR  TR MER+++M+RGKR+LE  E+EQPERKRPALASVIVEALKVDSLQKLCSSLEPI
Sbjct: 1   MQRPTTRLMERSNTMNRGKRTLEGEEEEQPERKRPALASVIVEALKVDSLQKLCSSLEPI 60

Query: 60  LRRVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGE 119
           LRRVVSEEVERALAKLGPARLN GR+SPKRIEGPDGRNLQL FRSRLSLPLFTGGKVEGE
Sbjct: 61  LRRVVSEEVERALAKLGPARLN-GRSSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGE 119

Query: 120 QGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREG 179
           QGAAIH+VLVDAN+G VVTSGPE+SVKLD+VVLEGDFNNED++GWTQEEF+SHVVKEREG
Sbjct: 120 QGAAIHIVLVDANSGSVVTSGPESSVKLDVVVLEGDFNNEDEEGWTQEEFDSHVVKEREG 179

Query: 180 KRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEA 239
           KRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVA G+CEGI IREAKTEA
Sbjct: 180 KRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVALGFCEGIHIREAKTEA 239

Query: 240 FTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQK 299
           FTVKDHRGELYKKHYPPAL DDVWRLEKIGKDGSFHKRLNN+ I++VEDFLRLVVRD QK
Sbjct: 240 FTVKDHRGELYKKHYPPALTDDVWRLEKIGKDGSFHKRLNNSHIYTVEDFLRLVVRDSQK 299

Query: 300 LRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQY 359
           LRSILGSGMSNKMWEAL++HAKTC +SGK YVYY +D+RNVGV+FNNIYEL+GLI+GEQY
Sbjct: 300 LRSILGSGMSNKMWEALIEHAKTCTMSGKFYVYYSDDTRNVGVIFNNIYELSGLIAGEQY 359

Query: 360 FPADALPESQKV 371
           F AD+L ESQKV
Sbjct: 360 FSADSLSESQKV 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495503|ref|XP_002273993.2| PREDICTED: uncharacterized protein LOC100256775 [Vitis vinifera]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/370 (85%), Positives = 350/370 (94%), Gaps = 3/370 (0%)

Query: 4   QTRYMERTSSMSRGKRSLE--SNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILR 61
           QTRYMER++S++R KR+L+  S E+ Q +RKRPALASVIVEALKVDSLQKLCSSLEPILR
Sbjct: 130 QTRYMERSNSLAREKRALDPSSTEEGQSDRKRPALASVIVEALKVDSLQKLCSSLEPILR 189

Query: 62  RVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQG 121
           RVVSEEVERALAKLGPA+L  GR+SPKRIEGPDGRNLQL FRSRLSLPLFTGGKVEGEQG
Sbjct: 190 RVVSEEVERALAKLGPAKLT-GRSSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQG 248

Query: 122 AAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKR 181
             IH+VL+DA+TGHVVTSGPE+SVKLD+VVLEGDFNNEDDDGW QEEFESHVVKEREGKR
Sbjct: 249 TTIHIVLLDASTGHVVTSGPESSVKLDVVVLEGDFNNEDDDGWNQEEFESHVVKEREGKR 308

Query: 182 PLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFT 241
           PLLTGDLQVTLKEGVGTLG+LTFTDNSSWIRSRKFRLGLKVASGYCEG+RIREAKT+AFT
Sbjct: 309 PLLTGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVASGYCEGMRIREAKTDAFT 368

Query: 242 VKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLR 301
           VKDHRGELYKKHYPPALND+VWRLEKIGKDGSFHKRLN AGIF+VEDFLRLVVRD Q+LR
Sbjct: 369 VKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLR 428

Query: 302 SILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFP 361
           +ILGSGMSNKMW+ L++HAKTCVLSGKLYVYYP+D R+VGVVFNNIYEL+GLI+G QY  
Sbjct: 429 NILGSGMSNKMWDVLVEHAKTCVLSGKLYVYYPDDVRSVGVVFNNIYELSGLIAGGQYHS 488

Query: 362 ADALPESQKV 371
           AD+L ++QKV
Sbjct: 489 ADSLTDNQKV 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457137|ref|XP_004146305.1| PREDICTED: uncharacterized protein LOC101216741 [Cucumis sativus] gi|449517323|ref|XP_004165695.1| PREDICTED: uncharacterized LOC101216741 [Cucumis sativus]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/369 (90%), Positives = 354/369 (95%), Gaps = 2/369 (0%)

Query: 3   RQTRYMERTSSMSRGKRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRR 62
           RQTRYMERT+SM R KR LE  EDE PERKRPALASVIVEALKVDSLQKLCSSLEPILRR
Sbjct: 2   RQTRYMERTNSM-REKRGLEGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRR 60

Query: 63  VVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGA 122
           VVSEEVERALAK+GPAR++ GR+SPKRIEGPDGRNLQL+FRSRLSLPLFTGGKVEGEQGA
Sbjct: 61  VVSEEVERALAKIGPARIS-GRSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGA 119

Query: 123 AIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRP 182
           AIHVVLVD+NTGHVVTSG EA  KLDIVVLEGDFNNEDD+ WT+EEFESHVVKEREGKRP
Sbjct: 120 AIHVVLVDSNTGHVVTSGQEALTKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRP 179

Query: 183 LLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTV 242
           LLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASG+CEG+RIREAKTEAFTV
Sbjct: 180 LLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGVRIREAKTEAFTV 239

Query: 243 KDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRS 302
           KDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLN  GIF+VEDFLR+VVRD QKLRS
Sbjct: 240 KDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNKNGIFTVEDFLRMVVRDSQKLRS 299

Query: 303 ILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPA 362
           ILGSGMSNKMWEALL+HAKTCVLSGKL++YYPE++RNVGVVFNNIYELNGLI+GEQYFPA
Sbjct: 300 ILGSGMSNKMWEALLEHAKTCVLSGKLHIYYPEEARNVGVVFNNIYELNGLITGEQYFPA 359

Query: 363 DALPESQKV 371
           D+L +SQKV
Sbjct: 360 DSLSDSQKV 368

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785125|emb|CAN66517.1| hypothetical protein VITISV_001611 [Vitis vinifera]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/370 (86%), Positives = 350/370 (94%), Gaps = 3/370 (0%)

Query: 4   QTRYMERTSSMSRGKRSLE--SNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILR 61
           QTRYMER++S++R KR+L+  S E+ Q +RKRPALASVIVEALKVDSLQKLCSSLEPILR
Sbjct: 2   QTRYMERSNSLAREKRALDPSSTEEGQSDRKRPALASVIVEALKVDSLQKLCSSLEPILR 61

Query: 62  RVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQG 121
           RVVSEEVERALAKLGPA+L  GR+SPKRIEGPDGRNLQL FRSRLSLPLFTGGKVEGEQG
Sbjct: 62  RVVSEEVERALAKLGPAKLT-GRSSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQG 120

Query: 122 AAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKR 181
             IH+VL+DA+TGHVVTSGPE+SVKLD+VVLEGDFNNEDDDGW QEEFESHVVKEREGKR
Sbjct: 121 TTIHIVLLDASTGHVVTSGPESSVKLDVVVLEGDFNNEDDDGWNQEEFESHVVKEREGKR 180

Query: 182 PLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFT 241
           PLLTGDLQVTLKEGVGTLG+LTFTDNSSWIRSRKFRLGLKVASGYCEG+RIREAKT+AFT
Sbjct: 181 PLLTGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVASGYCEGMRIREAKTDAFT 240

Query: 242 VKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLR 301
           VKDHRGELYKKHYPPALND+VWRLEKIGKDGSFHKRLN AGIF+VEDFLRLVVRD Q+LR
Sbjct: 241 VKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLR 300

Query: 302 SILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFP 361
           +ILGSGMSNKMW+ L++HAKTCVLSGKLYVYYP+D R+VGVVFNNIYEL+GLI+G QY  
Sbjct: 301 NILGSGMSNKMWDVLVEHAKTCVLSGKLYVYYPDDVRSVGVVFNNIYELSGLIAGGQYHS 360

Query: 362 ADALPESQKV 371
           AD+L E+QKV
Sbjct: 361 ADSLTENQKV 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144195|emb|CBI23322.3| unnamed protein product [Vitis vinifera]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/370 (85%), Positives = 350/370 (94%), Gaps = 3/370 (0%)

Query: 4   QTRYMERTSSMSRGKRSLE--SNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILR 61
           QTRYMER++S++R KR+L+  S E+ Q +RKRPALASVIVEALKVDSLQKLCSSLEPILR
Sbjct: 2   QTRYMERSNSLAREKRALDPSSTEEGQSDRKRPALASVIVEALKVDSLQKLCSSLEPILR 61

Query: 62  RVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQG 121
           RVVSEEVERALAKLGPA+L  GR+SPKRIEGPDGRNLQL FRSRLSLPLFTGGKVEGEQG
Sbjct: 62  RVVSEEVERALAKLGPAKLT-GRSSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQG 120

Query: 122 AAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKR 181
             IH+VL+DA+TGHVVTSGPE+SVKLD+VVLEGDFNNEDDDGW QEEFESHVVKEREGKR
Sbjct: 121 TTIHIVLLDASTGHVVTSGPESSVKLDVVVLEGDFNNEDDDGWNQEEFESHVVKEREGKR 180

Query: 182 PLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFT 241
           PLLTGDLQVTLKEGVGTLG+LTFTDNSSWIRSRKFRLGLKVASGYCEG+RIREAKT+AFT
Sbjct: 181 PLLTGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVASGYCEGMRIREAKTDAFT 240

Query: 242 VKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLR 301
           VKDHRGELYKKHYPPALND+VWRLEKIGKDGSFHKRLN AGIF+VEDFLRLVVRD Q+LR
Sbjct: 241 VKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLR 300

Query: 302 SILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFP 361
           +ILGSGMSNKMW+ L++HAKTCVLSGKLYVYYP+D R+VGVVFNNIYEL+GLI+G QY  
Sbjct: 301 NILGSGMSNKMWDVLVEHAKTCVLSGKLYVYYPDDVRSVGVVFNNIYELSGLIAGGQYHS 360

Query: 362 ADALPESQKV 371
           AD+L ++QKV
Sbjct: 361 ADSLTDNQKV 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735353|emb|CBI17793.3| unnamed protein product [Vitis vinifera]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/358 (89%), Positives = 343/358 (95%), Gaps = 1/358 (0%)

Query: 14  MSRGKRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALA 73
           M+RGKR+LE  E+EQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALA
Sbjct: 1   MNRGKRTLEGEEEEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALA 60

Query: 74  KLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANT 133
           KLGPARLN GR+SPKRIEGPDGRNLQL FRSRLSLPLFTGGKVEGEQGAAIH+VLVDAN+
Sbjct: 61  KLGPARLN-GRSSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQGAAIHIVLVDANS 119

Query: 134 GHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLK 193
           G VVTSGPE+SVKLD+VVLEGDFNNED++GWTQEEF+SHVVKEREGKRPLLTGDLQVTLK
Sbjct: 120 GSVVTSGPESSVKLDVVVLEGDFNNEDEEGWTQEEFDSHVVKEREGKRPLLTGDLQVTLK 179

Query: 194 EGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKH 253
           EGVGTLGDLTFTDNSSWIRSRKFRLGLKVA G+CEGI IREAKTEAFTVKDHRGELYKKH
Sbjct: 180 EGVGTLGDLTFTDNSSWIRSRKFRLGLKVALGFCEGIHIREAKTEAFTVKDHRGELYKKH 239

Query: 254 YPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMW 313
           YPPAL DDVWRLEKIGKDGSFHKRLNN+ I++VEDFLRLVVRD QKLRSILGSGMSNKMW
Sbjct: 240 YPPALTDDVWRLEKIGKDGSFHKRLNNSHIYTVEDFLRLVVRDSQKLRSILGSGMSNKMW 299

Query: 314 EALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKV 371
           EAL++HAKTC +SGK YVYY +D+RNVGV+FNNIYEL+GLI+GEQYF AD+L ESQKV
Sbjct: 300 EALIEHAKTCTMSGKFYVYYSDDTRNVGVIFNNIYELSGLIAGEQYFSADSLSESQKV 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562468|ref|XP_003549493.1| PREDICTED: uncharacterized protein LOC100803029 [Glycine max]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/361 (86%), Positives = 340/361 (94%), Gaps = 1/361 (0%)

Query: 11  TSSMSRGKRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVER 70
           T ++S GKRSLE  ED+QPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVER
Sbjct: 6   TDAISMGKRSLEGGEDDQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVER 65

Query: 71  ALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVD 130
           ALAKLGPARL+ GR+ PK IEGPDGR+LQL FRSRLSLPLFTGGKVEGEQGA IHVVL+D
Sbjct: 66  ALAKLGPARLS-GRSPPKMIEGPDGRSLQLKFRSRLSLPLFTGGKVEGEQGAPIHVVLID 124

Query: 131 ANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQV 190
           AN+G +VTSGPE+ VKLD+VVLEGDFNNEDD+ WTQE+FESHVVKEREGKRPLLTGDLQV
Sbjct: 125 ANSGSIVTSGPESCVKLDVVVLEGDFNNEDDEDWTQEDFESHVVKEREGKRPLLTGDLQV 184

Query: 191 TLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELY 250
           TLKEGVGTLG+LTFTDNSSWIRSRKFRLGLKVASG+CE IRIREAKT AF VKDHRGELY
Sbjct: 185 TLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVASGFCESIRIREAKTVAFIVKDHRGELY 244

Query: 251 KKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSN 310
           KKHYPPAL D+VWRLEKIGKDGSFHK+LN+AGI +VEDFLRLVV+D Q+LR+ILGSGMSN
Sbjct: 245 KKHYPPALTDEVWRLEKIGKDGSFHKKLNSAGIVTVEDFLRLVVKDQQRLRNILGSGMSN 304

Query: 311 KMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQK 370
           KMWEALLDHAKTCVLSGKLYVYYPED+RNVGV+FNNIYEL GLISG+Q++ AD+L +SQK
Sbjct: 305 KMWEALLDHAKTCVLSGKLYVYYPEDARNVGVIFNNIYELRGLISGDQFYSADSLTDSQK 364

Query: 371 V 371
           V
Sbjct: 365 V 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143772|ref|XP_002325070.1| predicted protein [Populus trichocarpa] gi|222866504|gb|EEF03635.1| predicted protein [Populus trichocarpa]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/376 (85%), Positives = 343/376 (91%), Gaps = 9/376 (2%)

Query: 4   QTRYMERTSSMSRGKRSLESNEDEQPE--------RKRPALASVIVEALKVDSLQKLCSS 55
            TRYMERT+SM+R KR LE    E+ E        RKRPALASVIVEALKVDSLQKLCSS
Sbjct: 2   HTRYMERTNSMARRKRGLEGGGAEEGEQQQQQQPERKRPALASVIVEALKVDSLQKLCSS 61

Query: 56  LEPILRRVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGK 115
           LEPILRRVVSEEVERALAK+GPAR   GR+SPKRIEGPDGRNLQL+FRSRLSLPLFTGGK
Sbjct: 62  LEPILRRVVSEEVERALAKIGPAR-QIGRSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGK 120

Query: 116 VEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVK 175
           VEGEQGAAIHVVLVDA+TGHVVTSG EASVKLD+VVLEGDFNNE D+GWTQEEFESHVVK
Sbjct: 121 VEGEQGAAIHVVLVDASTGHVVTSGTEASVKLDVVVLEGDFNNEADEGWTQEEFESHVVK 180

Query: 176 EREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREA 235
           EREGKRPLLTGDLQVTLKEGVG+LGDLTFTDNSSWIRSRKFRLGLKVASGY EGI IREA
Sbjct: 181 EREGKRPLLTGDLQVTLKEGVGSLGDLTFTDNSSWIRSRKFRLGLKVASGYSEGIHIREA 240

Query: 236 KTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVR 295
           KTEAFTVKDHRGELYKKHYPPAL+DDVWRLEKIGKDGSFHKRLNN GIF VEDFLRL V+
Sbjct: 241 KTEAFTVKDHRGELYKKHYPPALDDDVWRLEKIGKDGSFHKRLNNQGIFKVEDFLRLAVK 300

Query: 296 DPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLIS 355
           D QKLR+ILG GMSNKMW+ALL+HAKTCVLSGKLYVYYP++SRNVG VFNNI+ELNGLIS
Sbjct: 301 DSQKLRNILGGGMSNKMWDALLEHAKTCVLSGKLYVYYPDNSRNVGAVFNNIFELNGLIS 360

Query: 356 GEQYFPADALPESQKV 371
            EQY+ A++L + QK+
Sbjct: 361 EEQYYAANSLSDEQKI 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547543|ref|XP_003542171.1| PREDICTED: uncharacterized protein LOC100790087 [Glycine max]

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/361 (85%), Positives = 340/361 (94%), Gaps = 1/361 (0%)

Query: 11  TSSMSRGKRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVER 70
           + +++ GKRSLE  ED+QPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVER
Sbjct: 6   SDAINMGKRSLEGGEDDQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVER 65

Query: 71  ALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVD 130
           ALAKLGPARL+ GR+ PK IEGPDGR+LQL FRSRLSLPLFTGGKVEGEQGA IHVVL+D
Sbjct: 66  ALAKLGPARLS-GRSPPKMIEGPDGRSLQLKFRSRLSLPLFTGGKVEGEQGAPIHVVLMD 124

Query: 131 ANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQV 190
            N+G VVTSGPE+ VKLD+VVLEGDFNNEDD+ WTQE+FESHVVKEREGKRPLLTGDLQV
Sbjct: 125 VNSGSVVTSGPESCVKLDVVVLEGDFNNEDDEDWTQEDFESHVVKEREGKRPLLTGDLQV 184

Query: 191 TLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELY 250
           TLKEGVGTLG+LTFTDNSSWIRSRKFRLGLKVASG+CE +RIREAKT AFTVKDHRGELY
Sbjct: 185 TLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVASGFCESLRIREAKTVAFTVKDHRGELY 244

Query: 251 KKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSN 310
           KKHYPPAL D+VWRLEKIGKDGSFHK+LNNAGI +VE+FLRLVV+D QKLR+ILGSGMSN
Sbjct: 245 KKHYPPALTDEVWRLEKIGKDGSFHKKLNNAGIVTVEEFLRLVVKDQQKLRNILGSGMSN 304

Query: 311 KMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQK 370
           KMWEALLDHAKTCVLSGKLYVYYPED+RNVG++FNNIYEL GLISG+Q++ AD+L +SQK
Sbjct: 305 KMWEALLDHAKTCVLSGKLYVYYPEDARNVGIIFNNIYELRGLISGDQFYSADSLTDSQK 364

Query: 371 V 371
           V
Sbjct: 365 V 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114057|ref|XP_002316655.1| predicted protein [Populus trichocarpa] gi|222859720|gb|EEE97267.1| predicted protein [Populus trichocarpa]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 307/375 (81%), Positives = 347/375 (92%), Gaps = 8/375 (2%)

Query: 4   QTRYMERTSSMS----RGKRSLESN---EDEQPERKRPALASVIVEALKVDSLQKLCSSL 56
           QTRY++R++SM+    R KR L+S+   ++ QPERKRPALASVIVEALKVDSLQ+LCSSL
Sbjct: 2   QTRYVDRSNSMAAAPAREKRGLDSSTGGDEGQPERKRPALASVIVEALKVDSLQRLCSSL 61

Query: 57  EPILRRVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKV 116
           EPILRRVVSEEVERALAK+GPA+L  GR+SPK IEGP GRNLQL+FRSRLSLPLFTGGKV
Sbjct: 62  EPILRRVVSEEVERALAKIGPAKLT-GRSSPKCIEGPGGRNLQLHFRSRLSLPLFTGGKV 120

Query: 117 EGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKE 176
           EGEQGAAIH+VL+D NTGHVVTSGPE+SVKLD++VLEGDFNNEDDD WTQEEFESHVVKE
Sbjct: 121 EGEQGAAIHIVLIDGNTGHVVTSGPESSVKLDVIVLEGDFNNEDDDNWTQEEFESHVVKE 180

Query: 177 REGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAK 236
           REGKRPLLTGDLQVTLKEGVGTLG+L FTDNSSWIRSRKFRLGLKVASG CE IRIREAK
Sbjct: 181 REGKRPLLTGDLQVTLKEGVGTLGELIFTDNSSWIRSRKFRLGLKVASGCCEDIRIREAK 240

Query: 237 TEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRD 296
           T+AFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRL  AGI+SVEDFLRLVVRD
Sbjct: 241 TDAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLTKAGIYSVEDFLRLVVRD 300

Query: 297 PQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISG 356
           PQ+LR+ILGSGMSNKMW++L++HAKTCVLSGK Y+YYPED++NVG+VFNNIYE +GLI+ 
Sbjct: 301 PQRLRTILGSGMSNKMWDSLVEHAKTCVLSGKHYIYYPEDAKNVGIVFNNIYEFSGLIAN 360

Query: 357 EQYFPADALPESQKV 371
            +Y+ + +L ++QKV
Sbjct: 361 GEYYSSGSLSDNQKV 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
TAIR|locus:2054000	622	AT2G18750 [Arabidopsis thalian	0.907	0.583	0.795	1.3e-157
TAIR|locus:2174522	647	AT5G57580 [Arabidopsis thalian	0.9	0.556	0.806	1.4e-156
TAIR|locus:2117557	601	AT4G25800 [Arabidopsis thalian	0.885	0.589	0.816	1.9e-154
TAIR|locus:2061112	599	AT2G24300 [Arabidopsis thalian	0.89	0.594	0.665	4.6e-128
TAIR|locus:2126679	562	AT4G31000 [Arabidopsis thalian	0.897	0.638	0.623	2.8e-121
TAIR|locus:505006222	451	SARD1 "AT1G73805" [Arabidopsis	0.865	0.767	0.454	5e-76
TAIR|locus:2148548	563	CBP60G "Cam-binding protein 60	0.752	0.534	0.422	1.7e-59

TAIR|locus:2054000 AT2G18750 [Arabidopsis thaliana (taxid:3702)]

 Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
 Identities = 295/371 (79%), Positives = 339/371 (91%)

Query:     4 QTRYMERTSSMSRGKRSLESNEDEQ----PERKRPALASVIVEALKVDSLQKLCSSLEPI 59
             QTRYMERT+SM R KR LE ++++Q    PERKRPALASVIVEALK+DSLQ+LCSSLEPI
Sbjct:     2 QTRYMERTNSM-REKRKLEEDDNQQQQQQPERKRPALASVIVEALKMDSLQRLCSSLEPI 60

Query:    60 LRRVVSEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGE 119
             LRRVVSEEVERALAKLGPARL+  R+SPKRIEG  GRNLQL FRSRLS+PLFTGGK+EGE
Sbjct:    61 LRRVVSEEVERALAKLGPARLSE-RSSPKRIEGIGGRNLQLQFRSRLSVPLFTGGKIEGE 119

Query:   120 QGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREG 179
             QGAAIHVVL+D  TGHV+T GPEAS KLD+VVL+GDFN EDDDGW+ EEFE H+VKER+G
Sbjct:   120 QGAAIHVVLLDMTTGHVLTVGPEASAKLDVVVLDGDFNTEDDDGWSGEEFEGHLVKERQG 179

Query:   180 KRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEA 239
             KRPLLTGD+QVTLKEGVGTLG+L FTDNSSWIR RKFRLGL+V+SGYCEG+R+REAKTEA
Sbjct:   180 KRPLLTGDVQVTLKEGVGTLGELIFTDNSSWIRCRKFRLGLRVSSGYCEGMRVREAKTEA 239

Query:   240 FTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQK 299
             FTVKDHRGELYKKHYPPAL+D+VWRLEKIGKDG+FHK+LN AGI++V++FLRL+V+D QK
Sbjct:   240 FTVKDHRGELYKKHYPPALDDEVWRLEKIGKDGAFHKKLNKAGIYNVKEFLRLMVKDSQK 299

Query:   300 LRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQY 359
             LR+ILGSGMSN+MWE L +H+KTCVLS  LYVYYPEDS  VGVVFNNIYE +GLISG+QY
Sbjct:   300 LRTILGSGMSNRMWETLAEHSKTCVLSEMLYVYYPEDS--VGVVFNNIYEFSGLISGKQY 357

Query:   360 FPADALPESQK 370
             +PAD+L ++QK
Sbjct:   358 YPADSLSDNQK 368

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2174522 AT5G57580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1526 (542.2 bits), Expect = 1.4e-156, P = 1.4e-156
 Identities = 291/361 (80%), Positives = 326/361 (90%)

Query:    12 SSMSRGKRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERA 71
             ++M+R KR+L+ N+D+QPERKRPA ASVIVEALKVDSLQKLCSSLEPILRRVVSEE+ERA
Sbjct:     7 NNMNRAKRNLDGNDDDQPERKRPAFASVIVEALKVDSLQKLCSSLEPILRRVVSEELERA 66

Query:    72 LAKLGPARLNNGR-ASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVD 130
             LAKLGPARL     +SPKRIEGPDGR LQL+F+SRLSLPLFTGGKVEGEQGA IHVVL+D
Sbjct:    67 LAKLGPARLTGSSGSSPKRIEGPDGRKLQLHFKSRLSLPLFTGGKVEGEQGAVIHVVLID 126

Query:   131 ANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQV 190
             ANTG  V  GPEAS KL IVVLEGDFN EDD+ WTQEEFESHVVKER GKRPLLTG++ V
Sbjct:   127 ANTGRAVVYGPEASAKLHIVVLEGDFNTEDDEDWTQEEFESHVVKERSGKRPLLTGEVYV 186

Query:   191 TLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELY 250
             TLKEGVGTLG+L FTDNSSWIRSRKFRLGL+V SG C+G+RIREAKTEAF VKDHRGELY
Sbjct:   187 TLKEGVGTLGELVFTDNSSWIRSRKFRLGLRVVSGCCDGMRIREAKTEAFVVKDHRGELY 246

Query:   251 KKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSN 310
             KKHYPPALNDDVWRL+KIGKDG+FHK+L   GI +VEDFLR++V+D  KLR+ILGSGMSN
Sbjct:   247 KKHYPPALNDDVWRLDKIGKDGAFHKKLTAEGINTVEDFLRVMVKDSPKLRTILGSGMSN 306

Query:   311 KMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQK 370
             KMW+AL++HAKTCV S KLY+YY EDSRNVGVVFNNIYEL+GLISG+QYF AD+L +SQK
Sbjct:   307 KMWDALVEHAKTCVQSSKLYIYYAEDSRNVGVVFNNIYELSGLISGDQYFSADSLTDSQK 366

Query:   371 V 371
             V
Sbjct:   367 V 367

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2117557 AT4G25800 [Arabidopsis thaliana (taxid:3702)]

 Score = 1506 (535.2 bits), Expect = 1.9e-154, P = 1.9e-154
 Identities = 290/355 (81%), Positives = 321/355 (90%)

Query:    18 KRSLESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGP 77
             KR+ E N+D++PERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKL P
Sbjct:     2 KRNFERNDDDKPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLVP 61

Query:    78 ARLNNGRA-SPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHV 136
              RL      SPKRI GPDGRNLQL+F+SRLSLPLFTGG+VEGEQGA IHVVL+DANTG  
Sbjct:    62 TRLTTSSVFSPKRIGGPDGRNLQLHFKSRLSLPLFTGGRVEGEQGATIHVVLIDANTGRP 121

Query:   137 VTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLKEGV 196
             VT GPEAS+KL++VVL GDFNNEDD+ WTQEEFESHVVKEREGKRPLLTGDL V LKEGV
Sbjct:   122 VTVGPEASLKLEVVVLGGDFNNEDDEDWTQEEFESHVVKEREGKRPLLTGDLFVVLKEGV 181

Query:   197 GTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPP 256
             GTLG++ FTDNSSWIRSRKFRLGL+V SGYC+GIRIREAKTEAF+VKDHRGELYKKHYPP
Sbjct:   182 GTLGEIVFTDNSSWIRSRKFRLGLRVPSGYCDGIRIREAKTEAFSVKDHRGELYKKHYPP 241

Query:   257 ALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEAL 316
             ALND+VWRLEKIGKDG+FHKRL  AGI +VE FLR +VRD  KLR+ILGSGMSNKMW+ L
Sbjct:   242 ALNDEVWRLEKIGKDGAFHKRLTAAGIVTVEGFLRQLVRDSTKLRAILGSGMSNKMWDLL 301

Query:   317 LDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKV 371
             ++HAKTCVLSGKLY+YY EDSR+VGVVFNNIYEL+GLI+ +QY  AD+L ESQKV
Sbjct:   302 VEHAKTCVLSGKLYIYYTEDSRSVGVVFNNIYELSGLITEDQYLSADSLSESQKV 356

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2061112 AT2G24300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1257 (447.5 bits), Expect = 4.6e-128, P = 4.6e-128
 Identities = 239/359 (66%), Positives = 295/359 (82%)

Query:    16 RGKRSLESNEDEQPERKR---PALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERAL 72
             RG    + + D+ PE KR   PALASVIVEA+KVDSLQ+LCSSLEP+ RR+VSEEVERAL
Sbjct:     4 RGYECSQEDTDKLPESKRQKVPALASVIVEAVKVDSLQRLCSSLEPLFRRIVSEEVERAL 63

Query:    73 AKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDAN 132
             ++LG A+L +    PKRI+  +GRNLQL+FR+R+   LFTGGKVEGE+G+AIHVVL+DAN
Sbjct:    64 SRLGNAKLTSRSPEPKRIQDRNGRNLQLHFRTRMPPHLFTGGKVEGERGSAIHVVLIDAN 123

Query:   133 TGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTL 192
             TG+VV +G E++ KL++VVLEGDFN+EDD+ WT+E FES  VKEREGKRP+LTGD Q+ L
Sbjct:   124 TGNVVQTGEESASKLNVVVLEGDFNDEDDEDWTREHFESFEVKEREGKRPILTGDTQIVL 183

Query:   193 KEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKK 252
             KEGVGTLG+LTFTDNSSWIRSRKFRLG+K ASGY +   IREAKTE F VKDHRGELYKK
Sbjct:   184 KEGVGTLGELTFTDNSSWIRSRKFRLGVKPASGYGDSFCIREAKTEPFAVKDHRGELYKK 243

Query:   253 HYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKM 312
             HYPPA++D+VWRL++I KDG  HK+L  A I +VEDFLRL+V+DPQKLR++LGSGMSN+M
Sbjct:   244 HYPPAVHDEVWRLDRIAKDGVLHKKLLKANIVTVEDFLRLLVKDPQKLRNLLGSGMSNRM 303

Query:   313 WEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADALPESQKV 371
             WE  ++HAKTCVL GKLYV+Y + +   GVVFN+IYE  GLI+  Q+   ++L   QK+
Sbjct:   304 WENTVEHAKTCVLGGKLYVFYTDQTHATGVVFNHIYEFRGLITNGQFLSLESLNHDQKI 362

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2126679 AT4G31000 [Arabidopsis thaliana (taxid:3702)]

 Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
 Identities = 229/367 (62%), Positives = 289/367 (78%)

Query:     8 MERTSSMSRGKRSLESNEDEQPERKR---PALASVIVEALKVDSLQKLCSSLEPILRRVV 64
             ME + + +RG    + + D  PE KR   PALASVIVEA+KVDSLQ+LCSSLEP+ RR+V
Sbjct:     1 MENSMN-NRGHGHNQEHADNLPESKRQKLPALASVIVEAVKVDSLQRLCSSLEPLFRRIV 59

Query:    65 SEEVERALAKLGPARLNNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAI 124
             SEEVERA+++L  ++  +    P +I+G DGRNLQL FR+R+   LFTGGKVEGEQG+AI
Sbjct:    60 SEEVERAISRLENSKSTSRSTEPNKIQGLDGRNLQLRFRTRMPPHLFTGGKVEGEQGSAI 119

Query:   125 HVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLL 184
             HVVL+DANTG+V+ +G E+  KL+IVVL+GDFN+EDD  WT+E FES  VKEREGKRP+L
Sbjct:   120 HVVLIDANTGNVIQTGEESMTKLNIVVLDGDFNDEDDKDWTREHFESFEVKEREGKRPIL 179

Query:   185 TGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKD 244
             TGD  V +KEGVGTLG LTFTDNSSWIRSRKFRLG+K A+G+     IREAKTE F VKD
Sbjct:   180 TGDRHVIIKEGVGTLGKLTFTDNSSWIRSRKFRLGVKPATGF----HIREAKTEPFAVKD 235

Query:   245 HRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSIL 304
             HRGELYKKHYPP L+D+VWRL+KI KDG+ HK+L  + I +VEDFL+++++DPQKLRS+L
Sbjct:   236 HRGELYKKHYPPVLHDEVWRLDKIAKDGALHKKLLKSNIVTVEDFLQILMKDPQKLRSLL 295

Query:   305 GSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELNGLISGEQYFPADA 364
             GSGMSN+MW+  ++HAKTCVL GKLY YY + +    VVFN+IYE  GLI+   +  +++
Sbjct:   296 GSGMSNRMWDNTVEHAKTCVLGGKLYAYYTDQTHQTAVVFNHIYEFQGLIANGHFLSSES 355

Query:   365 LPESQKV 371
             L   QK+
Sbjct:   356 LNHDQKI 362

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:505006222 SARD1 "AT1G73805" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 168/370 (45%), Positives = 234/370 (63%)

Query:    17 GKR---SLESNEDEQPERK----RPALASVIVEAL-KVDSLQKLCSSLEPILRRVVSEEV 68
             GKR    L+S+++ + E++     P+LAS I      + S   L S LEP++R+VV +EV
Sbjct:     3 GKRLFQDLDSDQENKSEKRIKSVLPSLASPISSVFGALISENTLRSVLEPVIRKVVRQEV 62

Query:    69 ERALAKLGPARLNNGRASPKRIEGPDGRN--LQLYFRSRLSLPLFTGGKVEGEQGAAIHV 126
             E  ++K    R    R+S  RIE P+     L+L FR  L  P+FTG K+       + +
Sbjct:    63 EYGISK----RFRLSRSSSFRIEAPEATTPTLKLIFRKNLMTPIFTGSKISDVDNNPLEI 118

Query:   127 VLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTG 186
             +LVD +   V  + P   +KLDIV L GDF + D   WT +EFES+++KER+GKRPLL G
Sbjct:   119 ILVDDSNKPVNLNRP---IKLDIVALHGDFPSGDK--WTSDEFESNIIKERDGKRPLLAG 173

Query:   187 DLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYC-EGIRIREAKTEAFTVKDH 245
             ++ VT++ GV T+G++ FTDNSSWIRSRKFR+G KVA G   +G+ + EA TEA  V+DH
Sbjct:   174 EVSVTVRNGVATIGEIVFTDNSSWIRSRKFRIGAKVAKGSSGQGVVVCEAMTEAIVVRDH 233

Query:   246 RGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILG 305
             RGELYKKH+PP L D+VWRLEKIGKDG+FHK+L++  I +V+DFL+L V D  +LR ILG
Sbjct:   234 RGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSSRHINTVQDFLKLSVVDVDELRQILG 293

Query:   306 SGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYE-LNGLISGEQYFPADA 364
              GMS++ WE  L HA+ C+L  KLY+       N  ++ N I E +  LI G      ++
Sbjct:   294 PGMSDRKWEVTLKHARECILGNKLYI---SRGPNFFMILNPICEVMKALIDGHVLSSQES 350

Query:   365 LPESQKVGLI 374
             L +     L+
Sbjct:   351 LNQPYVKNLV 360

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2148548 CBP60G "Cam-binding protein 60-like G" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 133/315 (42%), Positives = 196/315 (62%)

Query:    39 VIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAK-LGPARLNNGRASPKRIEGPDGRN 97
             V+ + ++  S  +    +E ++RR+V EE++R+L   L  + ++  R+   R E P  R+
Sbjct:    28 VVKKVMRDQSNNQFMIQMENMIRRIVREEIQRSLQPFLSSSCVSMERS---RSETPSSRS 84

Query:    98 -LQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDF 156
              L+L F +     +FTG K+E E G+ + + LVDA T  +V++GP +S ++++V L  DF
Sbjct:    85 RLKLCFINSPPSSIFTGSKIEAEDGSPLVIELVDATTNTLVSTGPFSSSRVELVPLNADF 144

Query:   157 NNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTL-GDLTFTDNSSWIRSRK 215
               E    WT E F  +++ +REGKRPLLTGDL V LK GVG + GD+ F+DNSSW RSRK
Sbjct:   145 TEES---WTVEGFNRNILTQREGKRPLLTGDLTVMLKNGVGVITGDIAFSDNSSWTRSRK 201

Query:   216 FRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFH 275
             FRLG K+     +G    EA++EAF  +D RGE YKKH+PP  +D+VWRLEKI KDG   
Sbjct:   202 FRLGAKLTG---DGAV--EARSEAFGCRDQRGESYKKHHPPCPSDEVWRLEKIAKDGVSA 256

Query:   276 KRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPE 335
              RL    I +V+DF RL   +  +L +I+G+G+S K W  ++ HA  CVL       Y  
Sbjct:   257 TRLAERKILTVKDFRRLYTVNRNELHNIIGAGVSKKTWNTIVSHAMDCVLDETECYIYNA 316

Query:   336 DSRNVGVVFNNIYEL 350
             ++  V ++FN++YEL
Sbjct:   317 NTPGVTLLFNSVYEL 331


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.137   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      400       400   0.00098  117 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  247 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.38u 0.13s 36.51t   Elapsed:  00:00:01
  Total cpu time:  36.39u 0.13s 36.52t   Elapsed:  00:00:01
  Start:  Mon May 20 22:59:00 2013   End:  Mon May 20 22:59:01 2013

GO:0005634 "nucleus" evidence=ISM

GO:0005516 "calmodulin binding" evidence=ISS;IDA

GO:0002237 "response to molecule of bacterial origin" evidence=IEP;RCA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA;IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0010112 "regulation of systemic acquired resistance" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0080142 "regulation of salicylic acid biosynthetic process" evidence=IGI

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	400
pfam07887	301	pfam07887, Calmodulin_bind, Calmodulin binding pro	1e-163

>gnl|CDD|219620 pfam07887, Calmodulin_bind, Calmodulin binding protein-like

 Score =  459 bits (1182), Expect = e-163
 Identities = 176/275 (64%), Positives = 216/275 (78%), Gaps = 2/275 (0%)

Query: 97  NLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDF 156
            L+L F ++LSLP+FTG K+E E GA I + LVDANTG  VTSGP +S KL++VVL GDF
Sbjct: 1   RLKLVFLNKLSLPIFTGSKIEAEDGAPIKIALVDANTG--VTSGPLSSAKLEVVVLHGDF 58

Query: 157 NNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKF 216
           N+EDD+ WT+EEF  ++VKEREGKRPLLTGD+ VTLK GV  +G++ FTDNSSW RSRKF
Sbjct: 59  NSEDDENWTEEEFNKNIVKEREGKRPLLTGDVTVTLKNGVAVIGEIFFTDNSSWTRSRKF 118

Query: 217 RLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHK 276
           RLG +V  G  +G+R+REA TE+F VKDHRGELYKKH+PP+L D+VWRLEKIGKDG+FHK
Sbjct: 119 RLGARVVDGSYDGVRVREAVTESFVVKDHRGELYKKHHPPSLEDEVWRLEKIGKDGAFHK 178

Query: 277 RLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPED 336
           RL  +GI +V+DFLRL+ RDP KLR ILGSGMSNKMWE  + HAKTCVL  K Y+Y P  
Sbjct: 179 RLTASGINTVKDFLRLLHRDPNKLRQILGSGMSNKMWETTISHAKTCVLGDKCYIYRPAS 238

Query: 337 SRNVGVVFNNIYELNGLISGEQYFPADALPESQKV 371
            +NVG+ FN++YEL G+     Y PA+ L E Q+ 
Sbjct: 239 EKNVGLFFNSVYELVGVSFDGSYVPANNLSELQQA 273

The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members , are known to be involved in the induction of plant defence responses. However, their precise function in this regards is as yet unknown. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	400
PF07887	299	Calmodulin_bind: Calmodulin binding protein-like;	100.0
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	89.73
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	87.99
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	87.97
PRK04301	317	radA DNA repair and recombination protein RadA; Va	83.76
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	83.5

>PF07887 Calmodulin_bind: Calmodulin binding protein-like; InterPro: IPR012416 The members of this family are putative or actual calmodulin binding proteins expressed by various plant species

Probab=100.00  E-value=3.2e-119  Score=876.97  Aligned_cols=284  Identities=69%  Similarity=1.123  Sum_probs=279.6

Q ss_pred             ceEEEEccCCCCCccccCceeccCCCceEEEEEeCCCCceeccCCCccceEEEEEEeCCCCCCCCCCCCHHHhhhccccc
Q 015789           97 NLQLYFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKE  176 (400)
Q Consensus        97 ~~~L~F~n~l~~pifTg~kI~a~~g~~I~V~L~D~~t~~~V~~Gplss~kvEIvVLdGDF~~~~~e~WT~eEF~~~IV~~  176 (400)
                      +|||+|.|+|++|+|||++|+|+||+||+|+|+|++|+  |++||+||+|||||||||||+++++++||+|||++|||++
T Consensus         1 ~~~L~F~n~l~~pifT~~~i~a~~g~~i~V~l~d~~~~--v~~g~lss~kieIvvLdGdF~~~~~~~wT~eeF~~~iv~~   78 (299)
T PF07887_consen    1 NLQLRFLNKLSLPIFTGSKIEAEDGAPIKVALVDANTG--VTSGPLSSAKIEIVVLDGDFNDEDCEDWTEEEFNSHIVKE   78 (299)
T ss_pred             CeEEEecCCCCCCcccCCceEecCCCcEEEEEEECCCC--ccCCCCCCcEEEEEEEccccCCCccCCCCHHHHhhcEeec
Confidence            58999999999999999999999999999999999987  9999999999999999999999999999999999999999


Q ss_pred             CCCCccccccceEEEeecceeccCCeEeecCCccccccccEEEEEeecCCCCcceeeeecccceEEeecCCcccccCCCC
Q 015789          177 REGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPP  256 (400)
Q Consensus       177 R~Gk~pLL~Gdl~v~L~~Gva~l~di~FTDnSs~~rSrKFRLgaRv~~~~~~g~RI~EAvse~FvVkd~Rge~~kKh~pP  256 (400)
                      |+||+|||+|+++|+|+||+|+|+||+|||||||+|||||||||||+++++.|+|||||+||||+|||||||+|||||||
T Consensus        79 r~gk~pLL~G~~~v~L~~G~a~l~di~FtdnSs~~rsrKFRLgarv~~~~~~~~rI~Eavse~FvVkd~Rge~~kKh~pP  158 (299)
T PF07887_consen   79 REGKRPLLTGDLQVTLKNGVATLGDISFTDNSSWIRSRKFRLGARVVSGSCDGVRIREAVSEPFVVKDHRGELYKKHYPP  158 (299)
T ss_pred             CCCCCCCCCccEEEEecCCEEEccccEEecCcccccCCcEEEEEEEccCCCCCceeEEeeecCEEEEecccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             CCCccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCCCceEEEeeCC
Q 015789          257 ALNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPED  336 (400)
Q Consensus       257 ~L~DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~k~~~y~~~~  336 (400)
                      +|+|||||||+|||||+|||+|+.+||+||+|||+++++||++||+|||+|||++||++|++|||||++++++|+|| .+
T Consensus       159 ~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFl~l~~~d~~~Lr~ilg~~ms~k~We~~v~HA~tCvl~~~~y~y~-~~  237 (299)
T PF07887_consen  159 SLDDEVWRLEKIGKDGAFHKRLKKNGINTVEDFLKLLNKDPQKLREILGSGMSNKMWETTVEHAKTCVLGDKLYVYY-DE  237 (299)
T ss_pred             CCCCchhhhhhccccCHHHHHHHHcCCccHHHHHHHHhcCHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCcEEEEE-ec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 45


Q ss_pred             CCcEEEEEcccceeeeeecCCeeccCCCCChhhHHHHHHHHHHHhhh
Q 015789          337 SRNVGVVFNNIYELNGLISGEQYFPADALPESQKVGLIYIFVSAILL  383 (400)
Q Consensus       337 ~~~v~l~FN~i~~lVG~~~~g~y~~~d~L~~~qk~~v~~lk~~A~~~  383 (400)
                      ++|++|+|||||+||||.|+|+|+|.|+||++||++|++|+.+||+-
T Consensus       238 ~~nv~l~FN~i~~lvga~~~g~y~s~d~L~~~qK~~v~~Lv~~AY~n  284 (299)
T PF07887_consen  238 EQNVGLFFNCIYELVGAIFGGQYVSLDNLSSAQKAYVDKLVKQAYEN  284 (299)
T ss_pred             CCceEEEEcchhhEEeEEECCEEEehHHcCHHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999983

Some members (for example, Q8H6T7 from SWISSPROT), are known to be involved in the induction of plant defence responses []. However, their precise function in this regard is as yet unknown.

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=89.73  E-value=0.41  Score=48.04  Aligned_cols=49  Identities=29%  Similarity=0.341  Sum_probs=43.1

Q ss_pred             hhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCCC
Q 015789          274 FHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSG  327 (400)
Q Consensus       274 ~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~  327 (400)
                      .-++|+++||.||+||+..   +|..|.+++  |+|...++.+..||.+|....
T Consensus        13 ~~~~l~~~g~~t~~~~~~~---~~~~L~~i~--~ls~~~~~~~~~~~~~~~~~~   61 (316)
T TIGR02239        13 DIKKLQEAGLHTVESVAYA---PKKQLLEIK--GISEAKADKILAEAAKLVPMG   61 (316)
T ss_pred             HHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhcccc
Confidence            4468999999999999876   899999998  789999999999999886543

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=87.99  E-value=0.42  Score=48.70  Aligned_cols=62  Identities=29%  Similarity=0.338  Sum_probs=48.8

Q ss_pred             cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCCC
Q 015789          261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSG  327 (400)
Q Consensus       261 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~~  327 (400)
                      ++-+|+.-|-.-..-++|.++||.||+||+..   ++..|.++.  |+|....+.+++||.+|....
T Consensus        27 ~~~~l~~~gi~~~~i~kL~~~g~~T~~~~~~~---~~~~L~~i~--~is~~~~~~~~~~~~~~~~~~   88 (342)
T PLN03186         27 PIEQLQASGIAALDIKKLKDAGIHTVESLAYA---PKKDLLQIK--GISEAKVEKILEAASKLVPLG   88 (342)
T ss_pred             cHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhcccc
Confidence            35555443333345578999999999999876   889999998  789999999999998886543

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=87.97  E-value=0.57  Score=47.03  Aligned_cols=49  Identities=22%  Similarity=0.294  Sum_probs=43.1

Q ss_pred             hhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCC
Q 015789          273 SFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS  326 (400)
Q Consensus       273 ~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~  326 (400)
                      ..-++|+++||.||+||+..   ++..|.++.  |+|...++.+++.|+.+...
T Consensus        12 ~~~~~L~~~g~~t~~~~~~~---~~~~L~~~~--gls~~~~~~i~~~~~~~~~~   60 (313)
T TIGR02238        12 ADIKKLKSAGICTVNGVIMT---TRRALCKIK--GLSEAKVDKIKEAASKIINP   60 (313)
T ss_pred             HHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHhhhcc
Confidence            45578999999999999876   899999997  78999999999999988654

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=83.76  E-value=0.78  Score=45.43  Aligned_cols=57  Identities=21%  Similarity=0.358  Sum_probs=45.3

Q ss_pred             cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccc
Q 015789          261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV  324 (400)
Q Consensus       261 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCv  324 (400)
                      ++..|..||+  ...++|.++||.|++|++.+   |++.|.+++  |++.+.++.+.+-|+.+.
T Consensus         7 ~l~~l~gIg~--~~a~~L~~~Gi~t~~dl~~~---~~~~L~~~~--g~~~~~a~~l~~~a~~~~   63 (317)
T PRK04301          7 DLEDLPGVGP--ATAEKLREAGYDTVEAIAVA---SPKELSEAA--GIGESTAAKIIEAAREAA   63 (317)
T ss_pred             cHhhcCCCCH--HHHHHHHHcCCCCHHHHHcC---CHHHHHHhc--CCCHHHHHHHHHHHHHhh
Confidence            3445556665  45589999999999999765   999999998  678889999998887644

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=83.50  E-value=1  Score=46.10  Aligned_cols=60  Identities=20%  Similarity=0.328  Sum_probs=47.7

Q ss_pred             cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccC
Q 015789          261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL  325 (400)
Q Consensus       261 eVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl  325 (400)
                      ++..|+.-|-.-..-++|.++||+||+|++..   ++..|-++.  |+|...++.+++.|+..+.
T Consensus        30 ~~~~l~~~g~~~~~~~kL~~~g~~tv~~~~~~---~~~~L~~~~--g~s~~~~~ki~~~a~~~~~   89 (344)
T PLN03187         30 SIDKLISQGINAGDVKKLQDAGIYTCNGLMMH---TKKNLTGIK--GLSEAKVDKICEAAEKLLN   89 (344)
T ss_pred             CHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhc--CCCHHHHHHHHHHHHHhhc
Confidence            36666554444455689999999999999876   788899986  7899999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	400
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 53/438 (12%), Positives = 116/438 (26%), Gaps = 148/438 (33%)

Query: 22  ESNEDEQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVS-EEVERALAKLGPARL 80
           E+ E +   +    + SV  +A   +     C  ++ + + ++S EE++  +        
Sbjct: 10  ETGEHQYQYKD---ILSVFEDAFVDN-FD--CKDVQDMPKSILSKEEIDHIIM------- 56

Query: 81  NNGRASPKRIEGPDGRNLQLYFRSRLSLPLFTGGKVEGEQGAAIHVV-LVDANTG----- 134
                S   +                   LF     + E+     V  ++  N       
Sbjct: 57  -----SKDAVS-------GTLR-------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 135 -HVVTSGPEASVKLDIVVLEGDFNNEDDDGWTQEEFESHVVKEREGKRPLLTGDLQVTLK 193
                  P    ++        +  + D  +     ++ V  +    R      L+  L 
Sbjct: 98  IKTEQRQPSMMTRM--------YIEQRDRLYN----DNQVFAKYNVSRLQPYLKLRQALL 145

Query: 194 E-------------GVG-------TLGDLTFTDNSS----WIRSRKFR-----------L 218
           E             G G                       W+  +              L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 219 GLKVASGYCEGIRIREA-KTEAFTVKDHRGELYK-KHYPPALN--DDVWRLE-------- 266
             ++   +          K    +++     L K K Y   L    +V   +        
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 267 -KI-------------GKDGSFHKRLNN-AGIFSVEDFLRLVVR----DPQKLR------ 301
            KI                 + H  L++ +   + ++   L+++     PQ L       
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 302 -----SILGSGMSNKM-----WEALLDHAKTCVLSGKLYVYYPEDSRNVGVVFNNIYELN 351
                SI+   + + +     W+ +     T ++   L V  P + R +       ++  
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------FDRL 378

Query: 352 GLISGEQYFPADA-LPES 368
            +      FP  A +P  
Sbjct: 379 SV------FPPSAHIPTI 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	400
1wcn_A	70	Transcription elongation protein NUSA; RNA-binding	93.09
2kz3_A	83	Putative uncharacterized protein RAD51L3; RAD51D,	92.32
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	81.21
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	80.34

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=93.09  E-value=0.025  Score=44.09  Aligned_cols=62  Identities=26%  Similarity=0.426  Sum_probs=51.1

Q ss_pred             CCccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcc-ccCC
Q 015789          258 LNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT-CVLS  326 (400)
Q Consensus       258 L~DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAkt-Cvl~  326 (400)
                      +.|++-.|++|+..-+  ++|.++||+||+|+..+   +++.|-.|.  |+|...=+.++.-|+. |-+.
T Consensus         5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~   67 (70)
T 1wcn_A            5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG   67 (70)
T ss_dssp             CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence            4577788887776544  89999999999998765   788898887  7899999999999998 6553

>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}

Probab=92.32  E-value=0.1  Score=42.21  Aligned_cols=40  Identities=25%  Similarity=0.222  Sum_probs=31.4

Q ss_pred             hhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHH
Q 015789          275 HKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDH  319 (400)
Q Consensus       275 hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~H  319 (400)
                      -++|.++||.||+||+.+   |+.+|.+++  |+|-+.=-.+..|
T Consensus        17 ~~~L~~~~I~Tv~Dfl~~---d~~eL~~~~--~ls~~~v~~l~r~   56 (83)
T 2kz3_A           17 IQLLRSHRIKTVVDLVSA---DLEEVAQKC--GLSYKALVALRRV   56 (83)
T ss_dssp             HHHHHHTTCCCHHHHTTS---CHHHHHHHH--TCCHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHH
Confidence            478999999999999865   999999999  5676655444443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=81.21  E-value=0.4  Score=45.12  Aligned_cols=59  Identities=22%  Similarity=0.253  Sum_probs=44.0

Q ss_pred             ccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccC
Q 015789          260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL  325 (400)
Q Consensus       260 DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl  325 (400)
                      +++..|++|+.  .+-++|.++||+||+||+.+   ++..|-++.  |+|.+.=+.+++.|+.+..
T Consensus         3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~   61 (322)
T 2i1q_A            3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD   61 (322)
T ss_dssp             --CTTSTTCCH--HHHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred             ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence            45667775554  46689999999999999865   677777776  6788887788888877643

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=80.34  E-value=0.99  Score=45.13  Aligned_cols=62  Identities=23%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             ccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccCC
Q 015789          260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS  326 (400)
Q Consensus       260 DeVwRLekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl~  326 (400)
                      .++-+|+..|-.-..-++|.++||+||++|+..   ++..|.++.  |+|...=+.+++.|.+++..
T Consensus        81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~---~~~~L~~~~--gis~~~~~~i~~~a~~~~~~  142 (400)
T 3lda_A           81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYA---PRKDLLEIK--GISEAKADKLLNEAARLVPM  142 (400)
T ss_dssp             CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred             cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence            467888886655556689999999999999865   888999987  68998888888888876653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	400
d1jx4a2	240	e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul	0.004
d1zeta2	273	e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom	0.004

>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DinB homolog (DBH)
species: Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 230 IRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGK----DGSFHKRLNNAGIFS 285
           + I + K  A    D       K         + R   I           ++L   GI  
Sbjct: 142 VGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINK 201

Query: 286 VEDFLRLVVRDPQKLRSILGSGMSNKMWE 314
           + D L +   +  KL+ ++G   +  +  
Sbjct: 202 LVDTLSI---EFDKLKGMIGEAKAKYLIS 227

>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DNA polymerase iota
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 210 WIRSRKFR-LGLKVASGYCEGIRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKI 268
            +R   +  LGL   +G         AK  +   K ++  +        L   +  +++I
Sbjct: 156 EMREAMYNQLGLTGCAGV--ASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEI 213

Query: 269 -GKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEAL 316
            G      K L   GI SV D        P+ L   LG  ++ ++ +  
Sbjct: 214 PGIGYKTAKCLEALGINSVRDLQTF---SPKILEKELGISVAQRIQKLS 259

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	400
d1szpa1	64	DNA repair protein Rad51, N-terminal domain {Baker	91.95
d2i1qa1	60	DNA repair protein Rad51, N-terminal domain {Archa	80.08

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.95  E-value=0.033  Score=41.03  Aligned_cols=52  Identities=25%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             eeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccC
Q 015789          267 KIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL  325 (400)
Q Consensus       267 kIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktCvl  325 (400)
                      +||...+  ++|.++|++||++...   ..++.|-+|=  |++.+.=+.+++-|++++.
T Consensus        10 Gig~~~~--~kL~~aG~~Tve~ia~---~t~~~L~~i~--Gi~e~~a~KIi~~A~k~~~   61 (64)
T d1szpa1          10 GITMADV--KKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVP   61 (64)
T ss_dssp             TCCHHHH--HHHHTTSCCSHHHHHH---SCSHHHHTST--TCCHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHH--HHHHHcCCCcHHHHHh---CCHHHHHHcC--CCCHHHHHHHHHHHHHHcC
Confidence            5555444  8999999999999854   4788888885  7999999999999998764

>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=80.08  E-value=0.22  Score=35.73  Aligned_cols=51  Identities=22%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             eeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccc
Q 015789          266 EKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTC  323 (400)
Q Consensus       266 ekIgKdG~~hk~L~~~~I~tV~dFL~l~~~d~~kLR~iLg~gms~k~We~~v~HAktC  323 (400)
                      .+||.  +..++|.++|+.||++...   -+++.|.++=  |++.+.=+.+++.|+++
T Consensus         5 pGIG~--~~a~~L~~~G~~tv~~l~~---a~~eeL~~i~--Gi~~~~A~~i~~~ar~~   55 (60)
T d2i1qa1           5 PGVGP--STAEKLVEAGYIDFMKIAT---ATVGELTDIE--GISEKAAAKMIMGARDL   55 (60)
T ss_dssp             TTCCH--HHHHHHHHHTCCSHHHHHT---CCHHHHHTST--TCCHHHHHHHHHHHHHH
T ss_pred             CCCCH--HHHHHHHHccCCCHHHHHh---CCHHHHHHCC--CCCHHHHHHHHHHHHHH
Confidence            34444  3558999999999988654   4999999974  78999999999999865