Citrus Sinensis ID: 015794

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
MTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNLTP
cccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHcccccccEEEEEEEccEEEEEEEEccccccEEEEEccccccEEEccccccccccccccEEEEEEcccEEEEccEEEEccccccccEEEEEEcccEEEEEccEEEccccEEEEccccEEEEccEEEEcccEEEEcEEEEEEccEEEEEccccccccEEEEcccccccccEEEEEEccEEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHcccccccEEccccccccccccccccccc
ccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHccccccccccEEEcccccccEccHHHHHHHccccccccEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccccc
mtnqytcldgfaysdgnvrDVIKSSLYNISRHVSNSLVMLkkipgdnmsskyevfpeygrikrgfptwlslndrKLLQKSVNLTKFDLIvakdgsgnfTTITEAVeaapnksntRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAkgitvensagpskhQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRecdvygtvdfIFGNAAVVFQICNLyarkpnanqkniitaqgredpnqntgisiLNCKvaaasdlipyqtefktylgrpwkeySRTVFMLSYLgdliapagwlewngtfALSTLFygeyknrgpgsntsarvtwpgyrvinnsavaaqftagpflqgsewlnstgipfylnltp
mtnqytcldgfaysdgnvRDVIKSSLYNISRHVSNSLVMLkkipgdnmsSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITeaveaapnksntRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGItvensagpsKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAqgredpnqNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNLTP
MTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNLTP
****YTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVEN*********VALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNAN**NII***********TGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNL**
MTNQYTCLDGFAYSDG**********YNISRHVSNSLVMLKK************************TWLSLNDRKLLQ*SVNLTKFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNLT*
MTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENS**********LRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNLTP
MTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPG*******************FPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYL****
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MTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNLTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query400 2.2.26 [Sep-21-2011]
O81301518 Probable pectinesterase/p yes no 0.97 0.749 0.604 1e-146
P85076321 Pectinesterase OS=Actinid N/A no 0.782 0.975 0.779 1e-142
O81415532 Probable pectinesterase/p no no 0.975 0.733 0.608 1e-141
P83948584 Pectinesterase 3 OS=Citru no no 0.987 0.676 0.562 1e-131
O04886584 Pectinesterase 1 OS=Citru no no 0.99 0.678 0.566 1e-128
Q42534587 Pectinesterase 2 OS=Arabi no no 0.99 0.674 0.556 1e-126
Q43143583 Pectinesterase/pectineste N/A no 0.99 0.679 0.540 1e-124
O04887510 Pectinesterase 2 OS=Citru no no 0.872 0.684 0.594 1e-123
Q9LXK7527 Probable pectinesterase/p no no 0.975 0.740 0.530 1e-122
O49006592 Pectinesterase/pectineste no no 0.99 0.668 0.529 1e-122
>sp|O81301|PME40_ARATH Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1 Back     alignment and function desciption
 Score =  517 bits (1331), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/412 (60%), Positives = 307/412 (74%), Gaps = 24/412 (5%)

Query: 1   MTNQYTCLDGFAYSDG------------NVRDVIKSSLYNISRHVSNSLVMLKKIPGDNM 48
           MTN  TCLDGFA SD              V + +K SL+NIS HVS+SL ML+ IPG   
Sbjct: 117 MTNTRTCLDGFASSDNDENLNNNDNKTYGVAESLKESLFNISSHVSDSLAMLENIPGH-- 174

Query: 49  SSKYEVFPEYGRIKR--GFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVE 106
                  P  G++K   GFP W+S +DR LLQ  V+ TK +L+VA++G+GN+TTI EA+ 
Sbjct: 175 ------IP--GKVKEDVGFPMWVSGSDRNLLQDPVDETKVNLVVAQNGTGNYTTIGEAIS 226

Query: 107 AAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSA 166
           AAPN S TRFVIYIK G YFEN+E+ ++KTM+MF+GDGIG+TV+KANRS  DGWT F SA
Sbjct: 227 AAPNSSETRFVIYIKCGEYFENIEIPREKTMIMFIGDGIGRTVIKANRSYADGWTAFHSA 286

Query: 167 TVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFY 226
           TV V G+GFIAK ++  N AGP KHQAVALRS SDLSA+Y+CSF  YQDT+YVHS +QFY
Sbjct: 287 TVGVRGSGFIAKDLSFVNYAGPEKHQAVALRSSSDLSAYYRCSFESYQDTIYVHSHKQFY 346

Query: 227 RECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVA 286
           RECD+YGTVDFIFG+A+VVFQ C+LYAR+PN NQK I TAQGRE+  + TGISI++ ++ 
Sbjct: 347 RECDIYGTVDFIFGDASVVFQNCSLYARRPNPNQKIIYTAQGRENSREPTGISIISSRIL 406

Query: 287 AASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYK 346
           AA DLIP Q  FK YLGRPW+ YSRTV M S++ DL+ PAGWL+W   FAL TL+YGEY 
Sbjct: 407 AAPDLIPVQANFKAYLGRPWQLYSRTVIMKSFIDDLVDPAGWLKWKDDFALETLYYGEYM 466

Query: 347 NRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNL 398
           N GPGSN + RV WPG++ I     A+QF+ GPF+ G++WLNST IPF L+L
Sbjct: 467 NEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGNKWLNSTRIPFTLDL 518
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 Back     alignment and function description
>sp|O81415|PME39_ARATH Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description
>sp|Q42534|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2 Back     alignment and function description
>sp|Q43143|PMEU1_SOLLC Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1 Back     alignment and function description
>sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
224064458450 predicted protein [Populus trichocarpa] 0.992 0.882 0.814 0.0
255564232 557 Pectinesterase-3 precursor, putative [Ri 0.997 0.716 0.796 0.0
356570976 553 PREDICTED: probable pectinesterase/pecti 0.987 0.714 0.780 0.0
356501892 562 PREDICTED: probable pectinesterase/pecti 0.995 0.708 0.762 0.0
449529561 591 PREDICTED: probable pectinesterase/pecti 1.0 0.676 0.741 1e-178
449436467 561 PREDICTED: probable pectinesterase/pecti 1.0 0.713 0.738 1e-177
359479995 561 PREDICTED: probable pectinesterase/pecti 0.995 0.709 0.729 1e-174
356536711 561 PREDICTED: LOW QUALITY PROTEIN: probable 0.992 0.707 0.732 1e-173
229814830 565 pectin methylesterase [Musa acuminata AA 0.995 0.704 0.713 1e-167
115474043 579 Os07g0675100 [Oryza sativa Japonica Grou 0.99 0.683 0.648 1e-156
>gi|224064458|ref|XP_002301486.1| predicted protein [Populus trichocarpa] gi|222843212|gb|EEE80759.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/398 (81%), Positives = 356/398 (89%), Gaps = 1/398 (0%)

Query: 1   MTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGR 60
           MTNQYTCLDGFA S G VR  IK  LYNIS HVSNSL MLKKIPG N +SK EVFPEYG 
Sbjct: 53  MTNQYTCLDGFARSKGKVRKAIKKGLYNISHHVSNSLAMLKKIPGVN-ASKSEVFPEYGN 111

Query: 61  IKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYI 120
           +K GFP+WLS  DRKLLQ S N TKFDLIVAKDG+GNFTTI+EAV AAPN S+TRFVI+I
Sbjct: 112 VKHGFPSWLSTKDRKLLQASANATKFDLIVAKDGTGNFTTISEAVRAAPNSSDTRFVIHI 171

Query: 121 KAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGI 180
           KAGAYFENVEV++KK ML+F+GDGIGKTVVKANRSVVDGWTTFRSATVAVVG GFIAKGI
Sbjct: 172 KAGAYFENVEVERKKKMLVFIGDGIGKTVVKANRSVVDGWTTFRSATVAVVGDGFIAKGI 231

Query: 181 TVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFG 240
           T ENSAGPSKHQAVALRSGSDLSAFY+CSFVGYQDTLYVH+LRQFYRECD+YGT+DFIFG
Sbjct: 232 TFENSAGPSKHQAVALRSGSDLSAFYQCSFVGYQDTLYVHTLRQFYRECDIYGTIDFIFG 291

Query: 241 NAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKT 300
           NAAVVFQ  NLYARKPN+NQKNI TAQGREDPNQNTGISILNCKVAAA+DLIP ++ F+T
Sbjct: 292 NAAVVFQNSNLYARKPNSNQKNIFTAQGREDPNQNTGISILNCKVAAAADLIPVKSSFQT 351

Query: 301 YLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTW 360
           +LGRPWKEYSRTVF+ SY+ DL+ PAGWLEWN +FALSTL+Y EY NRGPGSNTSARVTW
Sbjct: 352 FLGRPWKEYSRTVFLRSYIDDLVDPAGWLEWNASFALSTLYYREYMNRGPGSNTSARVTW 411

Query: 361 PGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNL 398
           PGYR+I NS  A+QFT G F+QG+ WLNST IP++LNL
Sbjct: 412 PGYRIITNSTEASQFTVGAFIQGNTWLNSTDIPYFLNL 449

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564232|ref|XP_002523113.1| Pectinesterase-3 precursor, putative [Ricinus communis] gi|223537675|gb|EEF39298.1| Pectinesterase-3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356570976|ref|XP_003553658.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 39-like [Glycine max] Back     alignment and taxonomy information
>gi|356501892|ref|XP_003519757.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 40-like [Glycine max] Back     alignment and taxonomy information
>gi|449529561|ref|XP_004171768.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 40-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449436467|ref|XP_004136014.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 40-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479995|ref|XP_002271665.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 40-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536711|ref|XP_003536879.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 40-like [Glycine max] Back     alignment and taxonomy information
>gi|229814830|gb|ACQ85264.1| pectin methylesterase [Musa acuminata AAA Group] Back     alignment and taxonomy information
>gi|115474043|ref|NP_001060620.1| Os07g0675100 [Oryza sativa Japonica Group] gi|34393863|dbj|BAC83543.1| putative pectinesterase [Oryza sativa Japonica Group] gi|50509816|dbj|BAD31979.1| putative pectinesterase [Oryza sativa Japonica Group] gi|113612156|dbj|BAF22534.1| Os07g0675100 [Oryza sativa Japonica Group] gi|215715227|dbj|BAG94978.1| unnamed protein product [Oryza sativa Japonica Group] gi|222637676|gb|EEE67808.1| hypothetical protein OsJ_25560 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
TAIR|locus:2133219518 AT4G02320 [Arabidopsis thalian 0.97 0.749 0.604 1.2e-131
TAIR|locus:2137839532 AT4G02300 [Arabidopsis thalian 0.975 0.733 0.608 5.9e-128
TAIR|locus:2197056587 PME2 "pectin methylesterase 2" 0.99 0.674 0.556 1.3e-116
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.992 0.753 0.537 1.4e-112
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 0.997 0.667 0.538 2e-111
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.82 0.572 0.610 3e-110
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.992 0.676 0.520 1e-109
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.812 0.636 0.627 9e-109
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 0.765 0.528 0.638 1.2e-108
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.97 0.655 0.539 1.3e-107
TAIR|locus:2133219 AT4G02320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
 Identities = 249/412 (60%), Positives = 308/412 (74%)

Query:     1 MTNQYTCLDGFAYSDGN------------VRDVIKSSLYNISRHVSNSLVMLKKIPGDNM 48
             MTN  TCLDGFA SD +            V + +K SL+NIS HVS+SL ML+ IPG   
Sbjct:   117 MTNTRTCLDGFASSDNDENLNNNDNKTYGVAESLKESLFNISSHVSDSLAMLENIPGH-- 174

Query:    49 SSKYEVFPEYGRIKR--GFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVE 106
                    P  G++K   GFP W+S +DR LLQ  V+ TK +L+VA++G+GN+TTI EA+ 
Sbjct:   175 ------IP--GKVKEDVGFPMWVSGSDRNLLQDPVDETKVNLVVAQNGTGNYTTIGEAIS 226

Query:   107 AAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSA 166
             AAPN S TRFVIYIK G YFEN+E+ ++KTM+MF+GDGIG+TV+KANRS  DGWT F SA
Sbjct:   227 AAPNSSETRFVIYIKCGEYFENIEIPREKTMIMFIGDGIGRTVIKANRSYADGWTAFHSA 286

Query:   167 TVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFY 226
             TV V G+GFIAK ++  N AGP KHQAVALRS SDLSA+Y+CSF  YQDT+YVHS +QFY
Sbjct:   287 TVGVRGSGFIAKDLSFVNYAGPEKHQAVALRSSSDLSAYYRCSFESYQDTIYVHSHKQFY 346

Query:   227 RECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVA 286
             RECD+YGTVDFIFG+A+VVFQ C+LYAR+PN NQK I TAQGRE+  + TGISI++ ++ 
Sbjct:   347 RECDIYGTVDFIFGDASVVFQNCSLYARRPNPNQKIIYTAQGRENSREPTGISIISSRIL 406

Query:   287 AASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYK 346
             AA DLIP Q  FK YLGRPW+ YSRTV M S++ DL+ PAGWL+W   FAL TL+YGEY 
Sbjct:   407 AAPDLIPVQANFKAYLGRPWQLYSRTVIMKSFIDDLVDPAGWLKWKDDFALETLYYGEYM 466

Query:   347 NRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNL 398
             N GPGSN + RV WPG++ I     A+QF+ GPF+ G++WLNST IPF L+L
Sbjct:   467 NEGPGSNMTNRVQWPGFKRIETVEEASQFSVGPFIDGNKWLNSTRIPFTLDL 518
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2137839 AT4G02300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O81301PME40_ARATH3, ., 1, ., 1, ., 1, 10.60430.970.7490yesno
P85076PME_ACTDE3, ., 1, ., 1, ., 1, 10.77950.78250.9750N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.991
3rd Layer3.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 0.0
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 0.0
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-178
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-176
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-171
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-163
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-162
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-160
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-160
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-157
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-154
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-152
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-147
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-144
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-132
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-130
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-124
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-119
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-117
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 1e-112
PLN02197588 PLN02197, PLN02197, pectinesterase 7e-89
PLN02432293 PLN02432, PLN02432, putative pectinesterase 4e-71
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 3e-70
PLN02773317 PLN02773, PLN02773, pectinesterase 4e-66
PLN02304379 PLN02304, PLN02304, probable pectinesterase 5e-65
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 7e-63
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-58
PLN02671359 PLN02671, PLN02671, pectinesterase 2e-56
PLN02634359 PLN02634, PLN02634, probable pectinesterase 9e-53
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 3e-51
PLN02176340 PLN02176, PLN02176, putative pectinesterase 4e-42
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-37
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 1e-16
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 1e-05
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 3e-05
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  574 bits (1481), Expect = 0.0
 Identities = 251/406 (61%), Positives = 300/406 (73%), Gaps = 14/406 (3%)

Query: 1   MTNQYTCLDGFAYSDGN--------VRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKY 52
           MTNQ TCLDGF+ SD          + + +K S+ +IS H+SNSL ML+ I G       
Sbjct: 131 MTNQDTCLDGFSTSDNENNNDMTYELPENLKESILDISNHLSNSLAMLQNISGKIPG--- 187

Query: 53  EVFPEYGRIKRGFPTWLSLNDRKLLQKSVNLTKFDLIVAKDGSGNFTTITEAVEAAPNKS 112
              P+   +   +P+W+S NDR+LL+  V  T  +L VA DG+GNFTTI EAV AAPN S
Sbjct: 188 ---PKSSEVDVEYPSWVSGNDRRLLEAPVQETNVNLSVAIDGTGNFTTINEAVSAAPNSS 244

Query: 113 NTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFRSATVAVVG 172
            TRF+IYIK G YFENVE+ KKKTM+MF+GDGIGKTV+KANRS +DGW+TF++ATV V G
Sbjct: 245 ETRFIIYIKGGEYFENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGVKG 304

Query: 173 TGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVY 232
            GFIAK I+  N AGP+KHQAVALRSGSD SAFY+C F GYQDTLYVHS +QFYRECD+Y
Sbjct: 305 KGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIY 364

Query: 233 GTVDFIFGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLI 292
           GT+DFIFGNAAVVFQ C+LYARKPN N K   TAQ R   +Q TGISI++ ++ AA DLI
Sbjct: 365 GTIDFIFGNAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLI 424

Query: 293 PYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGS 352
           P +  FK YLGRPW++YSRTV + S++ DLI PAGWLEW   FAL TL+YGEY N GPG+
Sbjct: 425 PVKENFKAYLGRPWRKYSRTVIIKSFIDDLIHPAGWLEWKKDFALETLYYGEYMNEGPGA 484

Query: 353 NTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNL 398
           N + RVTWPG+R I N   A QFT GPF+ GS WLNSTGIPF L  
Sbjct: 485 NMTNRVTWPGFRRIENVTEATQFTVGPFIDGSTWLNSTGIPFTLGF 530

Length = 530
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 400
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02314586 pectinesterase 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.45
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.8
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.75
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.64
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.32
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.54
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.39
PLN02793443 Probable polygalacturonase 97.23
PLN02682369 pectinesterase family protein 97.13
PLN02480343 Probable pectinesterase 97.08
KOG1777 625 consensus Putative Zn-finger protein [General func 97.06
PLN02671359 pectinesterase 96.94
PLN02773317 pectinesterase 96.89
PLN02218431 polygalacturonase ADPG 96.88
PRK10531422 acyl-CoA thioesterase; Provisional 96.82
PLN03003456 Probable polygalacturonase At3g15720 96.82
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.74
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.62
PLN02634359 probable pectinesterase 96.58
PLN03010409 polygalacturonase 96.57
PLN02665366 pectinesterase family protein 96.54
PLN02176340 putative pectinesterase 96.48
PLN02304379 probable pectinesterase 96.37
PLN02497331 probable pectinesterase 96.35
PLN02432293 putative pectinesterase 96.29
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 96.27
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.19
PLN02197588 pectinesterase 96.18
PLN02506537 putative pectinesterase/pectinesterase inhibitor 96.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 95.99
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 95.95
PLN02170529 probable pectinesterase/pectinesterase inhibitor 95.93
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.92
PLN02916502 pectinesterase family protein 95.9
PLN02484587 probable pectinesterase/pectinesterase inhibitor 95.85
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 95.85
PLN02488509 probable pectinesterase/pectinesterase inhibitor 95.75
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 95.73
PLN02201520 probable pectinesterase/pectinesterase inhibitor 95.65
PLN02313587 Pectinesterase/pectinesterase inhibitor 95.48
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 95.4
PLN02155394 polygalacturonase 95.37
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 95.33
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 95.22
PLN02468565 putative pectinesterase/pectinesterase inhibitor 95.22
smart00656190 Amb_all Amb_all domain. 95.15
PLN02314586 pectinesterase 95.09
PLN02301548 pectinesterase/pectinesterase inhibitor 95.01
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 94.99
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 94.57
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 94.43
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 94.17
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 93.89
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 93.6
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 93.18
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 91.65
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 91.45
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 88.58
PLN02188404 polygalacturonase/glycoside hydrolase family prote 86.51
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 84.99
smart00722146 CASH Domain present in carbohydrate binding protei 81.68
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=1.1e-124  Score=962.05  Aligned_cols=389  Identities=45%  Similarity=0.800  Sum_probs=365.1

Q ss_pred             CcchhhhhhhhcCCCCchhHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccCCccCcccCCccccccccccchhhhc
Q 015794            1 MTNQYTCLDGFAYSDGNVRDVIKSSLYNISRHVSNSLVMLKKIPGDNMSSKYEVFPEYGRIKRGFPTWLSLNDRKLLQKS   80 (400)
Q Consensus         1 LTnq~TClDGf~~~~~~~~~~~~~~l~~~~~l~SNaLAiv~~~~~~~~~~~~~~~~~~~~~~~~~p~W~~~~~r~ll~~~   80 (400)
                      ||||+||+|||.+  +.+++.|...|.++++|+||+|||++.+...       ..|+++...++||+|+++.|||||+.+
T Consensus       119 lt~q~TC~dg~~~--~~~~~~~~~~l~~~~~~~sn~La~~~~~~~~-------~~~~~~~~~~~~P~W~~~~dR~lL~~~  189 (509)
T PLN02488        119 LTSYITCIDEIGE--GAYKRRVEPELEDLISRARVALAIFISISPR-------DDTELKSVVPNGPSWLSNVDKKYLYLN  189 (509)
T ss_pred             HhchhhHhccccC--cchHHHHHHHHHHHHHHHHHHHHhhcccccc-------ccchhhcccCCCCCCCCccchhhhhcC
Confidence            7999999999953  4688999999999999999999999976532       113444444689999999999999986


Q ss_pred             cCCc--ceeEEEcCCCCCCCccHHHHHHhCcCCCCceEEEEEecceeeeeeEecccCCceEEEecCCcceEEEccccccC
Q 015794           81 VNLT--KFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVD  158 (400)
Q Consensus        81 ~~~~--~~~i~Va~dgsg~f~TIq~Ai~aap~~~~~~~vI~Ik~G~Y~E~v~I~~~~~~itl~G~g~~~tiI~~~~~~~~  158 (400)
                      ....  +++++|++||+|+|+||||||+++|+++.+|++|+||||+|+|+|.|+++|+||||+|+|+++|||++++++.+
T Consensus       190 ~~~~~~~~~vvVa~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~  269 (509)
T PLN02488        190 PEVLKKIADVVVAKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASN  269 (509)
T ss_pred             cccccccccEEECCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeEEEEEecCCCccEEEEecCCCceEEEEcccccC
Confidence            5434  58999999999999999999999999988999999999999999999999999999999999999999999989


Q ss_pred             CcccccceeEEEEcCcEEEEeeEEecCCCCCCCceeEEEecCCceEEEEeEEeeccceEEecccceeeeecEEecccceE
Q 015794          159 GWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFI  238 (400)
Q Consensus       159 g~~t~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~f~~C~~~g~QDTL~~~~~r~~~~~C~I~G~vDfI  238 (400)
                      |.+|++||||.|.|++|+++||||+|++||.++||||||+.+|+++||+|+|+|||||||+|++|||||+|+|+|+||||
T Consensus       270 g~~T~~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFI  349 (509)
T PLN02488        270 GKRTFYTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFI  349 (509)
T ss_pred             CCCceeeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccceEEEeeEEEEecCCCCCceEEEecCCCCCCCCccEEEEecEEeecCCCCCCcccceEEEeccCcCCceEEEEecc
Q 015794          239 FGNAAVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSY  318 (400)
Q Consensus       239 fG~~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~nc~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~  318 (400)
                      ||+|++|||+|+|++++++.++.++||||+|+++++++||||+||+|++++++.+.....++||||||++|||||||+|+
T Consensus       350 FG~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~  429 (509)
T PLN02488        350 CGNAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSF  429 (509)
T ss_pred             ecceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCCccEEEEecc
Confidence            99999999999999999988899999999999999999999999999999987765555689999999999999999999


Q ss_pred             CCCccCcCccccCCCCCCccceEEEEeeccCCCCCCCCceecccccccCCHHHHccCCccCcccCCCCcCCCCCCcCCCC
Q 015794          319 LGDLIAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNL  398 (400)
Q Consensus       319 i~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~fi~g~~W~p~~~~~~~~g~  398 (400)
                      |+++|+|+||.+|++.++++|++|+||+|+||||++++||+|+++++|++++||.+||+.+||+|++|+|.+||||++||
T Consensus       430 i~~~I~P~GW~~W~~~~~~~t~~yaEY~n~GPGA~~s~RV~W~g~~~l~~~~eA~~ft~~~fi~G~~Wl~~tgvp~~~gl  509 (509)
T PLN02488        430 IGDLVDPAGWTPWEGETGLSTLYYGEYQNRGPGAVTSKRVKWTGFRVMTDPKEATKFTVAKLLDGESWLKASGVPYEKGL  509 (509)
T ss_pred             CCCeecccccCccCCCCCCCceEEEEecccCCCCCcCCCcccccccccCCHHHHHhhhHHheeCCCCcCCCCCCCcCCCC
Confidence            99999999999999999999999999999999999999999999998867899999999999999999999999999997

>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 1e-111
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-108
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 3e-22
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 4e-22
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 3e-21
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 7e-20
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/312 (59%), Positives = 235/312 (75%)
Query: 87  DLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIG 146
           +++VA DGSG++ T++EAV AAP  S TR+VI IKAG Y ENV+V KKK  +MF+GDG  
Sbjct: 8   NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67
Query: 147 KTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFY 206
            T++ A+++V DG TTF SATVA VG GF+A+ IT +N+AG +KHQAVALR GSDLSAFY
Sbjct: 68  STIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFY 127
Query: 207 KCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITA 266
           +C  + YQD+LYVHS RQF+  C + GTVDFIFGNAAVV Q C+++AR+P + QKN++TA
Sbjct: 128 RCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTA 187
Query: 267 QGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPA 326
           QGR DPNQNTGI I   ++ A SDL P Q+ F TYLGRPWKEYSRTV M S + ++I PA
Sbjct: 188 QGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA 247
Query: 327 GWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEW 386
           GW  W+G FAL TL+YGEY+N G G+ TS RVTW G++VI +S  A  FT G F+ G  W
Sbjct: 248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307
Query: 387 LNSTGIPFYLNL 398
           L +T  PF L L
Sbjct: 308 LKATTFPFSLGL 319
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-176
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-176
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-131
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-130
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 1e-112
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 3e-05
1x91_A153 Invertase/pectin methylesterase inhibitor family p 3e-04
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  491 bits (1267), Expect = e-176
 Identities = 187/312 (59%), Positives = 235/312 (75%)

Query: 87  DLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIG 146
           +++VA DGSG++ T++EAV AAP  S TR+VI IKAG Y ENV+V KKK  +MF+GDG  
Sbjct: 8   NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67

Query: 147 KTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFY 206
            T++ A+++V DG TTF SATVA VG GF+A+ IT +N+AG +KHQAVALR GSDLSAFY
Sbjct: 68  STIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFY 127

Query: 207 KCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITA 266
           +C  + YQD+LYVHS RQF+  C + GTVDFIFGNAAVV Q C+++AR+P + QKN++TA
Sbjct: 128 RCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTA 187

Query: 267 QGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPA 326
           QGR DPNQNTGI I   ++ A SDL P Q+ F TYLGRPWKEYSRTV M S + ++I PA
Sbjct: 188 QGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA 247

Query: 327 GWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEW 386
           GW  W+G FAL TL+YGEY+N G G+ TS RVTW G++VI +S  A  FT G F+ G  W
Sbjct: 248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307

Query: 387 LNSTGIPFYLNL 398
           L +T  PF L L
Sbjct: 308 LKATTFPFSLGL 319
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.69
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.51
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.7
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.33
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.04
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.78
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.7
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.64
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.45
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.37
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 97.33
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.32
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.26
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.23
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.2
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.2
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.17
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.11
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.09
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 97.04
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.97
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.94
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.93
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 96.89
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.76
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.65
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.44
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.42
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.09
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.06
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.01
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.97
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 95.95
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.69
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.3
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 94.48
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 90.79
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 90.19
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 90.01
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 89.8
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 89.72
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 88.39
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 87.93
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 86.64
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 86.23
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 85.04
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 84.58
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 84.09
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 82.55
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.1e-99  Score=749.75  Aligned_cols=315  Identities=60%  Similarity=0.995  Sum_probs=302.2

Q ss_pred             ceeEEEcCCCCCCCccHHHHHHhCcCCCCceEEEEEecceeeeeeEecccCCceEEEecCCcceEEEccccccCCccccc
Q 015794           85 KFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTTFR  164 (400)
Q Consensus        85 ~~~i~Va~dgsg~f~TIq~Ai~aap~~~~~~~vI~Ik~G~Y~E~v~I~~~~~~itl~G~g~~~tiI~~~~~~~~g~~t~~  164 (400)
                      +++++|++||+|+|+|||+||++||+++++|++|+|+||+|+|+|.|++.|++|||+|+|+++|+|+++.+..+|.+|+.
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~   81 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFR   81 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGG
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccCCCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccc
Confidence            57899999999999999999999999999999999999999999999998999999999999999999998888999999


Q ss_pred             ceeEEEEcCcEEEEeeEEecCCCCCCCceeEEEecCCceEEEEeEEeeccceEEecccceeeeecEEecccceEecccce
Q 015794          165 SATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAV  244 (400)
Q Consensus       165 sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~f~~C~~~g~QDTL~~~~~r~~~~~C~I~G~vDfIfG~~~a  244 (400)
                      ++||.|.+++|+++||+|+|++++.++|||||++.+|+++|++|+|+|||||||++++||||++|+|+|+||||||++++
T Consensus        82 satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~a  161 (317)
T 1xg2_A           82 SATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAV  161 (317)
T ss_dssp             GCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEE
T ss_pred             eeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceE
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeEEEEecCCCCCceEEEecCCCCCCCCccEEEEecEEeecCCCCCCcccceEEEeccCcCCceEEEEeccCCCccC
Q 015794          245 VFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIA  324 (400)
Q Consensus       245 vf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~nc~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~i~~~I~  324 (400)
                      +||+|+|++++++.++.++||||+|+++.+++||||+||+|++++++.+.....++||||||++|||+|||+|+|+++|+
T Consensus       162 vf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~  241 (317)
T 1xg2_A          162 VFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLIN  241 (317)
T ss_dssp             EEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBC
T ss_pred             EEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCccc
Confidence            99999999999877889999999999999999999999999999877554444589999999999999999999999999


Q ss_pred             cCccccCCCCCCccceEEEEeeccCCCCCCCCceecccccccCCHHHHccCCccCcccCCCCcCCCCCCcCCCCC
Q 015794          325 PAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNLT  399 (400)
Q Consensus       325 p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~fi~g~~W~p~~~~~~~~g~~  399 (400)
                      |+||.+|++.+++++++|+||+|+||||++++||+|+++++|++++||++||+.+||+|++|+|.++|||.+||.
T Consensus       242 p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~  316 (317)
T 1xg2_A          242 PAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLY  316 (317)
T ss_dssp             TTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSC
T ss_pred             ccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCcccccccc
Confidence            999999999888999999999999999999999999998888678999999999999998999999999999985
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 400
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-149
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 4e-92
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 1e-04
d1ru4a_400 b.80.1.9 (A:) Pectate transeliminase {Erwinia chry 2e-04
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  422 bits (1086), Expect = e-149
 Identities = 187/312 (59%), Positives = 235/312 (75%)

Query: 87  DLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIG 146
           +++VA DGSG++ T++EAV AAP  S TR+VI IKAG Y ENV+V KKK  +MF+GDG  
Sbjct: 8   NVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRT 67

Query: 147 KTVVKANRSVVDGWTTFRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFY 206
            T++ A+++V DG TTF SATVA VG GF+A+ IT +N+AG +KHQAVALR GSDLSAFY
Sbjct: 68  STIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFY 127

Query: 207 KCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQICNLYARKPNANQKNIITA 266
           +C  + YQD+LYVHS RQF+  C + GTVDFIFGNAAVV Q C+++AR+P + QKN++TA
Sbjct: 128 RCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTA 187

Query: 267 QGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDLIAPA 326
           QGR DPNQNTGI I   ++ A SDL P Q+ F TYLGRPWKEYSRTV M S + ++I PA
Sbjct: 188 QGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPA 247

Query: 327 GWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEW 386
           GW  W+G FAL TL+YGEY+N G G+ TS RVTW G++VI +S  A  FT G F+ G  W
Sbjct: 248 GWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSW 307

Query: 387 LNSTGIPFYLNL 398
           L +T  PF L L
Sbjct: 308 LKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Length = 400 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 99.14
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.82
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 97.98
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.29
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.12
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.83
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 96.67
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.65
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.41
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.25
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.15
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.15
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.1
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.96
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.83
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.47
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 94.52
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 92.57
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 88.74
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 84.4
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 82.22
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 81.75
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 80.89
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.5e-102  Score=766.22  Aligned_cols=316  Identities=59%  Similarity=1.010  Sum_probs=304.3

Q ss_pred             CcceeEEEcCCCCCCCccHHHHHHhCcCCCCceEEEEEecceeeeeeEecccCCceEEEecCCcceEEEccccccCCccc
Q 015794           83 LTKFDLIVAKDGSGNFTTITEAVEAAPNKSNTRFVIYIKAGAYFENVEVDKKKTMLMFVGDGIGKTVVKANRSVVDGWTT  162 (400)
Q Consensus        83 ~~~~~i~Va~dgsg~f~TIq~Ai~aap~~~~~~~vI~Ik~G~Y~E~v~I~~~~~~itl~G~g~~~tiI~~~~~~~~g~~t  162 (400)
                      ..+++|+|++||+|||+|||+||+++|.++.+|++|+||||+|+|+|.|+++|++|||+|+|++.|+|+++.+..++.+|
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t   83 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTT   83 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSSCSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccCCCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCCCcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999998889999


Q ss_pred             ccceeEEEEcCcEEEEeeEEecCCCCCCCceeEEEecCCceEEEEeEEeeccceEEecccceeeeecEEecccceEeccc
Q 015794          163 FRSATVAVVGTGFIAKGITVENSAGPSKHQAVALRSGSDLSAFYKCSFVGYQDTLYVHSLRQFYRECDVYGTVDFIFGNA  242 (400)
Q Consensus       163 ~~sat~~v~~~~f~~~~lt~~Nt~g~~~~qAvAl~~~~d~~~f~~C~~~g~QDTL~~~~~r~~~~~C~I~G~vDfIfG~~  242 (400)
                      +.++||.|.+++|+++||+|+|++|+.++|||||++.+|+++||+|+|+|||||||++.+||||++|+|+|+||||||++
T Consensus        84 ~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~  163 (319)
T d1gq8a_          84 FNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNA  163 (319)
T ss_dssp             GGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESC
T ss_pred             ccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCc
Confidence            99999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeEEEEecCCCCCceEEEecCCCCCCCCccEEEEecEEeecCCCCCCcccceEEEeccCcCCceEEEEeccCCCc
Q 015794          243 AVVFQICNLYARKPNANQKNIITAQGREDPNQNTGISILNCKVAAASDLIPYQTEFKTYLGRPWKEYSRTVFMLSYLGDL  322 (400)
Q Consensus       243 ~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~nc~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~i~~~  322 (400)
                      +++||+|+|+++++..++.++||||+|+++.+++||||++|+|++++++.+.....++||||||++||||||++|+|++|
T Consensus       164 ~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~  243 (319)
T d1gq8a_         164 AVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNV  243 (319)
T ss_dssp             EEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTT
T ss_pred             eeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccc
Confidence            99999999999988878889999999999999999999999999999876665567899999999999999999999999


Q ss_pred             cCcCccccCCCCCCccceEEEEeeccCCCCCCCCceecccccccCCHHHHccCCccCcccCCCCcCCCCCCcCCCC
Q 015794          323 IAPAGWLEWNGTFALSTLFYGEYKNRGPGSNTSARVTWPGYRVINNSAVAAQFTAGPFLQGSEWLNSTGIPFYLNL  398 (400)
Q Consensus       323 I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~fi~g~~W~p~~~~~~~~g~  398 (400)
                      |.|+||.+|++.+.+++++|+||+|+|||+++++||+|++++.+.+++||++||.++||+|++|+|.++|||.+||
T Consensus       244 I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         244 INPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             BCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             cccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            9999999999988899999999999999999999999998776558999999999999999999999999999998
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure