Citrus Sinensis ID: 015895

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLTISGYP
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHcccccEEEEcccccccHHHHHHcccccccEEEEcccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHcccccccccccccccccccHHHHHHHccEEEEEccccHHHHccccHHHHHccccccEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccEEEEEccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHccccEEEEEccccccHHHHHHHHcccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccEccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHEEEEcccccccHHHHHccEEcccHHHHHccccEEEEcccccccccccEcHHHHccccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccHHHcccccEEEcccccccEHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccc
Coil and Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpgtrWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAvgynnvdvnaankygiavgntpgvlTETTAELAASLSLAAARRIVEADEFMraglydgwlpnlfvgnllkgqtvgvigagrIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLkangeqpvtwkrASSMDEVLREADvislhpvldkttYHLINKERLATMKKEAILVncsrgpviDEVALVEHlkqnpmfrvgldvfedepymkpglsemknAIVVPHIASASKWTREGMATLAALNVLGkikgypiwgnpnqvepflnenaqppaaspsivnskalgkikisnvGTVCLTISGYP
Flexible Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFlkangeqpvtwKRASSMDEVLREAdvislhpvldkttYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVnskalgkikisnvgtvcltisgyp
Low Complexity Region (SEG)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVltettaelaaslslaaaRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLTISGYP
Disordered region (IsUnstruct)
******IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVE*******************KALGKIKISNVGTVCLTIS***
Disordered Region (DISOPRED)
*****************VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLTISGY*
Disordered Region (DISEMBL)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLTISGYP
Disordered Region (DISPRO)
**KPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLTISG*P
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLTISGYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
P13443	382	Glycerate dehydrogenase O	N/A	no	0.954	0.994	0.910	0.0
Q9C9W5	386	Glycerate dehydrogenase H	yes	no	0.954	0.984	0.910	0.0
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.766	0.913	0.388	5e-51
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.771	0.905	0.383	5e-50
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.670	0.806	0.419	5e-49
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.688	0.815	0.385	3e-48
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.678	0.813	0.412	6e-48
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.605	0.719	0.418	2e-47
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.726	0.867	0.388	1e-46
C5A1V0	334	Glyoxylate reductase OS=T	yes	no	0.766	0.913	0.385	4e-43

>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/380 (91%), Positives = 368/380 (96%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNAI+VPHIASASKWTREGMATLAALNVLGKIKGYP+W +PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPVWSDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           +EN  PPAASPSIVN+KALG
Sbjct: 361 DENVSPPAASPSIVNAKALG 380

Cucumis sativus (taxid: 3659)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9C9W5|HPR1_ARATH Glycerate dehydrogenase HPR, peroxisomal OS=Arabidopsis thaliana GN=HPR PE=1 SV=1

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/380 (91%), Positives = 368/380 (96%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++Q CRVEIC  KKTILSVEDII LIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQGCRVEICHLKKTILSVEDIIDLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMR GLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAMMKKEAILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           +EP+MKPGL++ KNAIVVPHIASASKWTREGMATLAALNVLG++KGYPIW +PN+V+PFL
Sbjct: 301 EEPFMKPGLADTKNAIVVPHIASASKWTREGMATLAALNVLGRVKGYPIWHDPNRVDPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           NENA PP ASPSIVNSKALG
Sbjct: 361 NENASPPNASPSIVNSKALG 380

Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  202 bits (513), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 192/332 (57%), Gaps = 27/332 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E  
Sbjct: 2   KPKVLITRKIP-ENGIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   K  +N AVGY+N+D+  A K G+ + NTP VLT  TA++A  L LA 
Sbjct: 58  DAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD+F+R+G +      W P +F+G  + G+T+G++G GRIG A AR   +GF M
Sbjct: 116 ARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++Y    +   +EK + A  +F+               +DE+L+E+D + L   L K T
Sbjct: 175 RILYNSRTRKPEVEKELGA--EFM--------------PLDELLKESDFVVLVVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ L++  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLG 342
            + N ++ PHI SA+   REGMA L A N++ 
Sbjct: 279 SLDNVVLAPHIGSATYGAREGMAELVARNLIA 310

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  198 bits (504), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 190/336 (56%), Gaps = 29/336 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+  
Sbjct: 5   KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKI 59

Query: 75  -GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
             E + AA      K  S  +VG++++D+  A K GI V +TPGVLT+  AE    L LA
Sbjct: 60  DAEVMDAA---PNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILA 116

Query: 134 AARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
             RRIVEAD+ +R G +D  W P    G  LKG+T+G++G GRIG A A+ +   F + +
Sbjct: 117 VTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKI 175

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD+ +   +E  +         N E        + +D +L ++D++S+H  L K TYH
Sbjct: 176 LYYDIERRWDVETVI--------PNME-------FTDLDTLLEKSDIVSIHVPLTKETYH 220

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LS 310
           LIN+ERL  MKK A L+N +RGPV+D  ALV+ LK+  +    LDVFE EP + P   L+
Sbjct: 221 LINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEP-LPPNHPLT 279

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           +  N ++ PHIASA+   R+ MA LAA N++  +KG
Sbjct: 280 KFDNVVLAPHIASATIEARQRMAELAARNLIAVLKG 315

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 178/303 (58%), Gaps = 36/303 (11%)

Query: 49  ILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108
           +  V+ ++ L+ DK D    +L E+  +           K  +  AVGY+N+D+  A K 
Sbjct: 43  VREVDALVTLVTDKVDK---ELLENAPKL----------KIIAQYAVGYDNIDIEEATKR 89

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLK 164
           GI V NTPGVLT+ TA+LA +L LA ARRIVEAD F+R+G +     GW P +F+G  LK
Sbjct: 90  GIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLK 149

Query: 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVT 223
           G+T+G++G GRIG A A+   +GF M +IYY   +    E+ + A Y  F          
Sbjct: 150 GKTLGIVGFGRIGQALAKR-AKGFGMKIIYYSRTRKPEAEEEIGAEYVDF---------- 198

Query: 224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV 283
                  + +L+E+D ISLH  L K TYH+I ++ L  MK  AIL+N SRG V+D  AL+
Sbjct: 199 -------ETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALI 251

Query: 284 EHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGK 343
           + LK+  +   GLDVFE+EPY    L ++KN ++ PHI SA+   REGMA L A N++  
Sbjct: 252 KALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATHEAREGMAELVAKNLIAF 311

Query: 344 IKG 346
            KG
Sbjct: 312 AKG 314

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/298 (38%), Positives = 170/298 (57%), Gaps = 24/298 (8%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E ++  + D  D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V
Sbjct: 37  EKLLEKVKD-VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYV 93

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTV 168
            NTP VLT  TA+ A +L LA AR +V+ D+F+R+G +      W P  F+G  L G+T+
Sbjct: 94  TNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTI 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A AR   +GF M ++YY   + ++ EK + A                   
Sbjct: 154 GIVGFGRIGQAIARR-AKGFNMRILYYSRTRKSQAEKELGA----------------EYR 196

Query: 229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288
            ++EVL+E+D + L   L K T ++IN+ERL  MK  AILVN +RG V+D  AL++ LK+
Sbjct: 197 PLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKE 256

Query: 289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             +   GLDVFE+EPY    L  + N ++ PHI SA+   RE MA L A N++   +G
Sbjct: 257 GWIAGAGLDVFEEEPYYNEELFSLDNVVLTPHIGSATFEAREAMAELVARNLIAFKRG 314

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  191 bits (486), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 180/296 (60%), Gaps = 26/296 (8%)

Query: 55  IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN 114
           II  + D CD ++  LT+     +F A  +   +  +  AVGY+N+DV  A K GI V N
Sbjct: 39  IIERVKD-CDALVSLLTDPIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTN 95

Query: 115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGA 173
           TPGVLTETTA+ A +L +AAARR+VEAD ++R G +   W P + +G  + G+T+G++G 
Sbjct: 96  TPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGM 155

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDE 232
           GRIG+A AR   +GF M ++YYD   + R E F    G +++               +++
Sbjct: 156 GRIGAAVARR-AKGFGMRILYYD---SIRREDFEKELGVEYV--------------PLEK 197

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           +L E+D +SLH  L + TYH+I +E+L  MK+ AILVN SRG V+D+ AL + LK+  + 
Sbjct: 198 LLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIA 257

Query: 293 RVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             GLDVFE EP + P   L +++N ++ PH ASAS  TR  MA + A N++   +G
Sbjct: 258 GAGLDVFEQEP-IPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAENLIAFKRG 312

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/265 (41%), Positives = 160/265 (60%), Gaps = 24/265 (9%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           +  + MAVG++N+DV  A + GI V NTPGVLTE TAE   +L LAAARR+VEAD F+R 
Sbjct: 70  RIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRW 129

Query: 148 G----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G    L  GW P + +G  L+G+T+G++G GRIGS  A +  + F M +IY+   +   +
Sbjct: 130 GEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIG-KAFGMRIIYHSRSRKREI 188

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK + A                   S++++LRE+D++S+H  L   T HLI +  L  MK
Sbjct: 189 EKELGA----------------EYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMK 232

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHI 321
           K AILVN  RG ++D  ALV+ L++  +    LDVFE+EP + P   L+  KN ++ PH 
Sbjct: 233 KTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEP-LNPNHPLTAFKNVVLAPHA 291

Query: 322 ASASKWTREGMATLAALNVLGKIKG 346
           ASA++ TR  MA +AA N++   +G
Sbjct: 292 ASATRETRLRMAMMAAENLVAFAQG 316

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/314 (38%), Positives = 183/314 (58%), Gaps = 25/314 (7%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N
Sbjct: 18  MLKEHFEVEVWPEEREI-PREVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVAN 73

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD- 151
            AVGY+N+DV  A + GI V NTP VLT+ TA+ A +L LA ARR++EAD F R+G +  
Sbjct: 74  YAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKR 133

Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G++G GRIG A AR    GF M ++YY   +    EK + 
Sbjct: 134 RGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARR-ARGFGMRILYYSRSRKPEAEKELG 192

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F               S++++LRE+D + L   L K T ++IN+ERL  MKK AIL
Sbjct: 193 A--EF--------------RSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAIL 236

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 328
           VN +RG V+D  AL++ LK+  +   GLDV+E+EPY    L  +KN ++ PHI SA+   
Sbjct: 237 VNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGA 296

Query: 329 REGMATLAALNVLG 342
           REGMA L A N++ 
Sbjct: 297 REGMAELVARNLIA 310

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 188/332 (56%), Gaps = 27/332 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I++L E    VE+  +++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITRAIPEN-GIDMLREH-FEVEVWPEEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F    R   +  +N AVGY+NVDV  A + GI V NTP VLT  TA+ A +L LA 
Sbjct: 58  DGEVFDNAPRL--RIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD F R+G +      W P +F+G+ + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    E+ + A  +F                ++E+L+E+D + L   L K T
Sbjct: 175 RILYYSRTRKPEAEEELKA--EF--------------KPLEELLKESDFVVLAVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+I +  L  MK  AILVN +RG V+D  AL++ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLG 342
            +KN I+ PHI SA+   REGMA L A N++ 
Sbjct: 279 SLKNVILAPHIGSATFGAREGMAELVARNLIA 310

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
255581842	386	hydroxypyruvate reductase, putative [Ric	0.954	0.984	0.965	0.0
118489484	386	unknown [Populus trichocarpa x Populus d	0.954	0.984	0.944	0.0
13873334	386	hydroxypyruvate reductase [Bruguiera gym	0.954	0.984	0.939	0.0
225428049	386	PREDICTED: glycerate dehydrogenase [Viti	0.954	0.984	0.931	0.0
224078341	386	predicted protein [Populus trichocarpa]	0.954	0.984	0.939	0.0
147805559	386	hypothetical protein VITISV_020147 [Viti	0.952	0.981	0.931	0.0
388493492	388	unknown [Lotus japonicus]	0.954	0.979	0.918	0.0
118723307	386	hydroxypyruvate reductase [Solenostemon	0.954	0.984	0.918	0.0
449454213	382	PREDICTED: glycerate dehydrogenase-like	0.954	0.994	0.910	0.0
388506608	386	unknown [Medicago truncatula]	0.952	0.981	0.907	0.0

>gi|255581842|ref|XP_002531721.1| hydroxypyruvate reductase, putative [Ricinus communis] gi|223528624|gb|EEF30641.1| hydroxypyruvate reductase, putative [Ricinus communis]

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/380 (96%), Positives = 374/380 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQATRLEKFVTAYG FL+ANGEQPVTWKRASSMDEVLR ADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQATRLEKFVTAYGAFLQANGEQPVTWKRASSMDEVLRVADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+WGNPNQVEPFL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNQVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           NENA PPAASPSIVN+KALG
Sbjct: 361 NENAPPPAASPSIVNAKALG 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489484|gb|ABK96544.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/380 (94%), Positives = 376/380 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVLGKIKGYP+WG+PNQV PFL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNQVAPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           NENA PPAASPSIVN+KALG
Sbjct: 361 NENAPPPAASPSIVNAKALG 380

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13873334|dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorhiza]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/380 (93%), Positives = 376/380 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP G+YRVVSTKPMPGTRWINLL++QDCR+EICT+KKTILSVEDIIAL+G
Sbjct: 1   MAKPVSIEVWNPRGRYRVVSTKPMPGTRWINLLVQQDCRLEICTEKKTILSVEDIIALMG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALS+AGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA++MDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAATMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LA+MKKEA+LVNCSRGPVIDEVALVEHL++NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLASMKKEAVLVNCSRGPVIDEVALVEHLRRNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+WG+PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           NENA PPAA PSIVNSKALG
Sbjct: 361 NENAPPPAACPSIVNSKALG 380

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428049|ref|XP_002279281.1| PREDICTED: glycerate dehydrogenase [Vitis vinifera] gi|297744600|emb|CBI37862.3| unnamed protein product [Vitis vinifera]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/380 (93%), Positives = 375/380 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIW +PN+VEPFL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWHDPNKVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           NEN+ PPAASPSIVN+KALG
Sbjct: 361 NENSLPPAASPSIVNAKALG 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078341|ref|XP_002305524.1| predicted protein [Populus trichocarpa] gi|222848488|gb|EEE86035.1| predicted protein [Populus trichocarpa]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/380 (93%), Positives = 376/380 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQ+KTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQQKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVLGKIKGYP+WG+PN+V PFL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNRVAPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           NENA PPAASPSIVN+KALG
Sbjct: 361 NENAPPPAASPSIVNAKALG 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805559|emb|CAN65023.1| hypothetical protein VITISV_020147 [Vitis vinifera]

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/379 (93%), Positives = 374/379 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIW +PN+VEPFL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWHDPNKVEPFL 360

Query: 361 NENAQPPAASPSIVNSKAL 379
           NEN+ PPAASPSIVN+KAL
Sbjct: 361 NENSLPPAASPSIVNAKAL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493492|gb|AFK34812.1| unknown [Lotus japonicus]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/380 (91%), Positives = 372/380 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP+GKYRVVSTKPMPGTRWINLLI+QDCR+EICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  EKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAY  FLKANGE PVTWKRASSMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRASSMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHL+QNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEAALVEHLRQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           +EPYMKPGL+E+KNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+W + N+VEPFL
Sbjct: 301 EEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANKVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           +ENAQPPAASPSIVN+KALG
Sbjct: 361 DENAQPPAASPSIVNAKALG 380

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118723307|gb|ABL10359.1| hydroxypyruvate reductase [Solenostemon scutellarioides]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/380 (91%), Positives = 370/380 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+ +EV+NPNGKYRVVSTK MPGTRWINLL++QDCR+EICT+KKTILSVEDII+LIG
Sbjct: 1   MAKPLQVEVYNPNGKYRVVSTKSMPGTRWINLLVDQDCRLEICTEKKTILSVEDIISLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGG AFSNMAVGYNNVDV+AANK+G+AVGNTPGVLT
Sbjct: 61  NKCDGVIGQLTEDWGEKLFSALSRAGGTAFSNMAVGYNNVDVDAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFL+ANGEQPVTWKRASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLQANGEQPVTWKRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL +MKNAI+VPHIASASKWTREGMATLAALNVLGKIKGYPIWG+PN V PFL
Sbjct: 301 DEPYMKPGLEKMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPIWGDPNNVAPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           NEN+ PPAA PSIVNSKALG
Sbjct: 361 NENSPPPAACPSIVNSKALG 380

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454213|ref|XP_004144850.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|449508825|ref|XP_004163421.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|118564|sp|P13443.1|DHGY_CUCSA RecName: Full=Glycerate dehydrogenase; Short=GDH; AltName: Full=NADH-dependent hydroxypyruvate reductase; Short=HPR gi|18264|emb|CAA41434.1| NADH-dependent hydroxypyruvate reductase [Cucumis sativus] gi|18275|emb|CAA32764.1| unnamed protein product [Cucumis sativus]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/380 (91%), Positives = 368/380 (96%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNAI+VPHIASASKWTREGMATLAALNVLGKIKGYP+W +PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPVWSDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           +EN  PPAASPSIVN+KALG
Sbjct: 361 DENVSPPAASPSIVNAKALG 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506608|gb|AFK41370.1| unknown [Medicago truncatula]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/379 (90%), Positives = 370/379 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSI+VWNPNGKYRVVSTK MPGTRWINLLI+QDCR+EICT+KKTILSVED IALIG
Sbjct: 1   MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDTIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALS+AGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG FLKANGE PVTWKRA+SMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAIL+NCSRGPVIDEVALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+E+KNA+VVPHIASASKWTREGMATLAALNVLGKIKGYP+W + N+VEPFL
Sbjct: 301 DEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKAL 379
           NENAQPPAA PSIVN+KAL
Sbjct: 361 NENAQPPAACPSIVNAKAL 379

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.296	0.365	0.389	7.3e-40
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.603	0.740	0.355	1.1e-34
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.603	0.740	0.359	2.8e-34
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.610	0.740	0.339	4.6e-34
TIGR_CMR|BA_5135	330	BA_5135 "D-isomer specific 2-h	0.771	0.930	0.295	5.2e-33
TIGR_CMR|SPO_1570	330	SPO_1570 "D-isomer specific 2-	0.670	0.809	0.306	1.8e-32
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.366	0.278	0.36	4.1e-32
UNIPROTKB|P37666	324	ghrB "GhrB" [Escherichia coli	0.608	0.746	0.360	4.2e-31
UNIPROTKB|Q5TM04	328	2-KGalARE "Glyoxylate/hydroxyp	0.630	0.765	0.344	1.1e-30
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.650	0.789	0.326	1.8e-30

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 236 (88.1 bits), Expect = 7.3e-40, Sum P(2) = 7.3e-40
 Identities = 46/118 (38%), Positives = 75/118 (63%)

Query:   229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288
             +++E+L+ AD I+++   +   +H+I++E+   MKK A +VN SRGP++ E AL   LK 
Sbjct:   191 TLEELLQTADFITINCAYNPKLHHMIDEEQFKMMKKTAYIVNASRGPIMHEAALAHALKT 250

Query:   289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             N +    LDVFE EP +   L  +KN ++ PH+ +A+  TR+ MA +A  N+L  +KG
Sbjct:   251 NEIEGAALDVFEFEPKITEELKGLKNVVLAPHVGNATFETRDAMAEMAVRNILAVLKG 308

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 91/256 (35%), Positives = 139/256 (54%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N DV+  ++ GI + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRVAELDAYTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    + T LE+ + A 
Sbjct:   131 TRSIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNSRKTELEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S+D++L EAD + L   L + T HLI +  L+ MK  AIL+N
Sbjct:   190 -QF--------------RSLDQLLAEADFVCLVVPLSEKTKHLIGRRELSLMKPGAILIN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
              +RGP++DE AL+E L+   +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+
Sbjct:   235 IARGPIVDEPALIEALQNGTIRGAGLDVYEKEPLKESPLFQLKNAVTLPHIGSATTETRQ 294

Query:   331 GMATLAALNVLGKIKG 346
              MA  A  N+   + G
Sbjct:   295 AMADRAYHNLRNALLG 310

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 92/256 (35%), Positives = 138/256 (53%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N D+   N+ G+ + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARRVAELDAWTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    +   LE+ + A 
Sbjct:   131 QASVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGNSRKAALEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S++++L EAD + L   L + T HLI+   LA MK  AILVN
Sbjct:   190 -QF--------------RSLEQLLAEADFVCLVVPLSEKTKHLISHRELALMKPSAILVN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
              SRGPV+DE AL+E L++  +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+
Sbjct:   235 ISRGPVVDEPALIEALQKGQIRGAGLDVYEKEPLAESPLFQLKNAVTLPHIGSATHETRD 294

Query:   331 GMATLAALNVLGKIKG 346
              MA  A  N+   + G
Sbjct:   295 AMAARAMSNLRSALLG 310

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 89/262 (33%), Positives = 135/262 (51%)

Query:    82 LSRAGG--KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             ++RAG   +  +    G +N+DV +A + GI V NTPGV                 RR+ 
Sbjct:    65 MARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMH 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E  + M AG +DGW P   +G  L G+ +G+IG GRIG A AR     F M + Y++   
Sbjct:   125 EGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARR-ARAFGMQIHYHNRKP 183

Query:   200 -ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
              ++R+E+ + A              W    S+D++L   D++S++      T+HLIN  R
Sbjct:   184 VSSRIEESLEA------------TYW---DSLDQMLARMDIVSINCPHTPATFHLINARR 228

Query:   259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVV 318
             L  MK EA ++N +RG VIDE AL   ++   +   GLDVFE EP + P L  + N +++
Sbjct:   229 LGLMKPEAYIINTARGEVIDEAALARAIRAGKIAGAGLDVFEREPAVNPELIGLPNVLLL 288

Query:   319 PHIASASKWTREGMATLAALNV 340
             PH+ SA+   R  M     +N+
Sbjct:   289 PHMGSATIEGRTEMGEKVIINI 310

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|BA_5135 BA_5135 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 99/335 (29%), Positives = 165/335 (49%)

Query:    15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             K +V   +P+P   ++   + + C  E   Q + +   + ++  I DK DG++       
Sbjct:    12 KPKVYIAEPVP--TFVENYLSEHCDYEKWEQNEKVPR-DVLLEKIQDK-DGLLN-FGSAI 66

Query:    75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXX 134
              E L  A      K  SN++VGY+N D+ A  K+ +   NTP V                
Sbjct:    67 NEELLEAAPNL--KVVSNISVGYDNFDLQAMAKHNVIGTNTPYVLDDTVADLVFALMLSA 124

Query:   135 XRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              RR+ E D +++ G ++  +     G  +   T+G+IG GRIG A A+    GF M+++Y
Sbjct:   125 GRRVCELDSYVKNGEWNAEIGKEHFGLDVHHSTIGIIGMGRIGEAVAKRAKFGFDMDVLY 184

Query:   195 YDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYH 252
             Y+  +    E KF   Y                   +  +L+++D ++ L P+ D+T YH
Sbjct:   185 YNRRRKEEAEQKFDATY-----------------CDLQTLLKQSDFIVLLTPLTDET-YH 226

Query:   253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSE 311
             LI ++  + MK+ AI +N SRG  +DE AL++ L +  +F  G+D F  EP  K   L  
Sbjct:   227 LIGEKEFSFMKETAIFINASRGKTVDEEALIDALTEKKIFAAGIDTFTQEPIQKDNPLLS 286

Query:   312 MKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             ++N + +PHI SA+  TR+ MA  AA N++  ++G
Sbjct:   287 LQNVVTLPHIGSATLKTRQQMAMTAAENLVAGLQG 321

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_1570 SPO_1570 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 87/284 (30%), Positives = 141/284 (49%)

Query:    64 DGVIGQLTEDWG-ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
             D ++  +T+  G E L     +   +  +N  VGY+++D +A   +GI V NTP V    
Sbjct:    55 DAILPTVTDKLGAEALDVTAPQT--RLLANYGVGYSHIDSDAVRAHGITVSNTPDVLSEC 112

Query:   123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                          RR  E +  +RAG + GW P   VG+ + G+ +G++G GRIG A A+
Sbjct:   113 TADIAMTLMLMVARRAGEGERELRAGQWTGWRPTHLVGSKVSGKVLGIVGFGRIGQAMAQ 172

Query:   183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
                 GF M ++  +  ++   +  +  YG              +  ++D +L + D +SL
Sbjct:   173 RAHHGFGMKILVQN--RSAVPQDVLDRYGA------------TQVETLDAMLPQCDFVSL 218

Query:   243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
             H        HLIN  RL  MK +A L+N +RG V+DE AL + L  + +    LDVF+ E
Sbjct:   219 HCPGGAANRHLINSRRLDLMKPDAFLINTARGEVVDEHALAQALMFDCIGGAALDVFDGE 278

Query:   303 PYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             P + P L +  N +++PH+ SA++ TRE M      N++   +G
Sbjct:   279 PRIAPVLLDCDNLVMLPHLGSATRETREAMGMRVLDNLVDYFEG 322

GO:0008152 "metabolic process" evidence=ISS

GO:0050578 "(R)-2-hydroxyacid dehydrogenase activity" evidence=ISS

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 239 (89.2 bits), Expect = 4.1e-32, Sum P(2) = 4.1e-32
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   200 ATRLEKFVT---AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             A R++ F T    Y  F+     Q +      S++E+L+ +D++++H  L+  T +LIN+
Sbjct:   155 AKRVKAFETRVIGYDPFISEERAQ-MLGITLMSLEELLQNSDIVTMHLPLNNETRNLINR 213

Query:   257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 316
             ERL  MKK A ++NC+RG +IDE AL E LK   +    LDVF  EP  +  L E+ N I
Sbjct:   214 ERLKLMKKSAFIINCARGGIIDEEALYEALKAGEIAGAALDVFSKEPLTESPLFELPNVI 273

Query:   317 VVPHIASASKWTREGMATLAALNVLGKIKG 346
             V PH+ +++K  +  +A   A  +   +KG
Sbjct:   274 VTPHLGASTKEAQINVAIDVAREIASVLKG 303

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|P37666 ghrB "GhrB" [Escherichia coli K-12 (taxid:83333)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 94/261 (36%), Positives = 134/261 (51%)

Query:    88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
             +A S ++VGY+N DV+A     I + +TP V                 RR+VE  E ++A
Sbjct:    68 RATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKA 127

Query:   148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
             G +   +   + G  +  +T+G++G GRIG A A+    GF M +    LY A R  K  
Sbjct:   128 GEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPI----LYNARRHHK-- 181

Query:   208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              A  +F   N        R   +D +L+E+D + L   L   T+HL   E+ A MK  AI
Sbjct:   182 EAEERF---NA-------RYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAI 231

Query:   268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASAS 325
              +N  RGPV+DE AL+  L++  +   GLDVFE EP     P LS M N + VPHI SA+
Sbjct:   232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS-MANVVAVPHIGSAT 290

Query:   326 KWTREGMATLAALNVLGKIKG 346
               TR GMA  A  N++  ++G
Sbjct:   291 HETRYGMAACAVDNLIDALQG 311

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046181 "ketogluconate catabolic process" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019521 "D-gluconate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=IEA;IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5TM04 2-KGalARE "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 94/273 (34%), Positives = 136/273 (49%)

Query:    88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
             +A ++++VG +N D++   +  I + NTP V                 RR+VE    +RA
Sbjct:    68 RAVASVSVGVDNYDIDYLTQRRILLSNTPDVLTETTADTGFALILATARRVVELANLVRA 127

Query:   148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
             G +   +     G  + G+T+G+IG GRIG A A+    GF M LIY+       +E+  
Sbjct:   128 GQWQRNIGPAHFGTDVHGKTLGIIGMGRIGEALAQRGHFGFGMPLIYHSTRPKPAVEQRF 187

Query:   208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              A  Q+               S++++L EAD I L   L + T  LI     A M+ E+I
Sbjct:   188 NA--QY--------------RSLEQLLEEADFICLTLPLTERTQGLIGAREFALMRPESI 231

Query:   268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASAS 325
              +N SRG V+DE AL+E L+Q  +   GLDVFE EP  +  P L ++ N +  PHI SA+
Sbjct:   232 FINISRGKVVDEAALIEALQQRRIRGAGLDVFEREPLDHDSP-LLQLPNVVATPHIGSAT 290

Query:   326 KWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 358
               TRE MA  A  N+L  + G      PN V P
Sbjct:   291 HETREAMARCAVDNLLAALAGQR---PPNLVNP 320

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

GO:0046487 "glyoxylate metabolic process" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 91/279 (32%), Positives = 137/279 (49%)

Query:    82 LSRAGGKA--FSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             L++AG +    +N   G +++DV  A + GI V NTPGV                 RRI 
Sbjct:    65 LAQAGERMRLIANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVTRRIP 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E    M+   + GW P   +G  + G+ +G++G GRIG A AR     F M + Y++   
Sbjct:   125 EGLAVMQKNEWTGWAPTALLGGRVGGRRLGILGMGRIGQAVARR-ASAFGMQIHYHN--- 180

Query:   200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259
               RL   V      L+A      TW    S+D+++   DVIS++     +T+HL+N  RL
Sbjct:   181 RRRLRPEVE---DALEA------TWW--DSLDQMIARMDVISVNCPSTPSTFHLMNARRL 229

Query:   260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319
               MK   ++VN SRG VIDE AL   ++   +   GLDV+E    + P L E+ N +++P
Sbjct:   230 KLMKPTGVIVNTSRGEVIDENALTRMIRTGEIAGAGLDVYEHGTQVNPRLRELPNVVLLP 289

Query:   320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 358
             H+ SA+   R  M     +N+     G+     P+QV P
Sbjct:   290 HMGSATLEGRIEMGEKVIINIKTFADGHR---PPDQVVP 325

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9W5	HPR1_ARATH	1, ., 1, ., 1, ., 2, 9	0.9105	0.9547	0.9844	yes	no
P13443	DHGY_CUCSA	1, ., 1, ., 1, ., 2, 9	0.9105	0.9547	0.9947	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
4th Layer	1.1.1.29	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036132001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (418 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022240001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (401 aa)	•			•			•		0.664
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.442
	GSVIVG00025097001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_32, whole genome shotg [...] (221 aa)				•					0.416
	GSVIVG00015518001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (99 aa)				•					0.412
	GSVIVG00011932001	SubName- Full=Chromosome undetermined scaffold_2569, whole genome shotgun sequence; (393 aa)				•					0.412
	GSVIVG00015393001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (270 aa)				•					0.411
	GSVIVG00037644001	SubName- Full=Chromosome chr9 scaffold_90, whole genome shotgun sequence; (395 aa)				•					0.408
	GSVIVG00036212001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (397 aa)				•					0.406
	GSVIVG00026129001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (273 aa)				•					0.402
	GSVIVG00024835001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (329 aa)				•					0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	0.0
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-133
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	3e-84
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	2e-83
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	3e-80
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	2e-78
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	2e-78
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	2e-76
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	6e-72
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	6e-64
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	9e-64
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	5e-63
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	3e-62
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	4e-60
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	1e-58
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	2e-58
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-57
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	5e-57
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	6e-56
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	7e-56
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	1e-55
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	7e-54
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	7e-54
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	4e-53
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	4e-53
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	1e-50
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	3e-49
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	5e-49
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	3e-47
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	7e-47
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	3e-45
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	4e-44
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	3e-41
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	3e-39
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	2e-38
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	8e-37
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	7e-34
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	2e-32
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	3e-32
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	4e-31
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-30
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	4e-30
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	6e-30
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	7e-28
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	1e-27
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	8e-26
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	2e-25
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	8e-25
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	7e-24
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	2e-23
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	9e-23
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	5e-18
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	1e-16
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	2e-15
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	4e-15
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	2e-14
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	2e-13
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	3e-13
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	3e-12
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	7e-07
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	2e-05

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  800 bits (2068), Expect = 0.0
 Identities = 356/380 (93%), Positives = 375/380 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++QDCRVEICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKERLA MKKEA+LVN SRGPVIDEVALVEHLK NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVLGK+KGYP+WG+PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           NENA PPAASPSIVN+KALG
Sbjct: 361 NENAPPPAASPSIVNAKALG 380

Length = 386

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  384 bits (990), Expect = e-133
 Identities = 135/332 (40%), Positives = 188/332 (56%), Gaps = 24/332 (7%)

Query: 16  YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWG 75
            +V+ T+ +P    + LL  +   VE+   +   L  E+++       DG++  LT+   
Sbjct: 1   PKVLVTRRLPE-EALALL-REGFEVEVW-DEDRPLPREELLEAAKG-ADGLLCTLTDKID 56

Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAA 135
             L  A      K  +N +VGY+++DV+AA   GI V NTP VLT+ TA+LA +L LAAA
Sbjct: 57  AELLDAAPPL--KVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAA 114

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE D F+RAG + GW P L +G  L G+T+G++G GRIG A AR    GF M ++Y+
Sbjct: 115 RRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAK-GFGMKILYH 173

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           +  +    E+ + A                   S+DE+L E+D +SLH  L   T HLIN
Sbjct: 174 NRSRKPEAEEELGAR----------------YVSLDELLAESDFVSLHCPLTPETRHLIN 217

Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKN 314
            ERLA MK  AIL+N +RG V+DE ALVE LK   +   GLDVFE EP      L  + N
Sbjct: 218 AERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPN 277

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            +++PHI SA+  TR  MA LAA N+L  + G
Sbjct: 278 VVLLPHIGSATVETRTAMAELAADNLLAVLAG 309

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  259 bits (664), Expect = 3e-84
 Identities = 116/320 (36%), Positives = 172/320 (53%), Gaps = 34/320 (10%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE-------DWGETLFAALSRAG 86
           +E++  V        ++S E+++  I D  D +I  L+        D  + L        
Sbjct: 17  LEENFEV-TYYDGLGLISKEELLERIAD-YDALITPLSTPVDKEIIDAAKNL-------- 66

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K  +N   G++N+DV+ A + GI V NTP V TE TAEL   L LA ARRI E D  MR
Sbjct: 67  -KIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMR 125

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
            G + GW P  F+G+ L G+T+G+IG GRIG A AR   + F M ++YY+ ++ +   + 
Sbjct: 126 RGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARR-AKAFGMKILYYNRHRLSEETE- 183

Query: 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266
               G           T+     +DE+L+E+D +SLH      T+HLI+      MK  A
Sbjct: 184 -KELG----------ATYV---DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTA 229

Query: 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
            L+N +RGP++DE ALV+ LK   +    LDVFE EP + P L ++ N I+ PHI +A+ 
Sbjct: 230 YLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATV 289

Query: 327 WTREGMATLAALNVLGKIKG 346
             R+ MA  AA N++  ++G
Sbjct: 290 EARDAMAKEAADNIISFLEG 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  257 bits (658), Expect = 2e-83
 Identities = 128/312 (41%), Positives = 171/312 (54%), Gaps = 30/312 (9%)

Query: 32  LLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI-GQLTEDWGETLFAALSRAGGKAF 90
           LL      V +    +  L+ E++I L+ D  DGVI G   +   E + AA  R   K  
Sbjct: 19  LLEAAGFEVVLNPLGR-PLTEEELIELLKD-ADGVIAG--LDPITEEVLAAAPRL--KVI 72

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           S   VGY+N+D+ AA K GI V NTPG  + + AEL   L LA AR+I +AD  +RAG  
Sbjct: 73  SRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAG-- 130

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW     VG  L G+T+G+IG GRIG A AR +  GF M ++ YD Y            
Sbjct: 131 -GWDR--PVGTELYGKTLGIIGLGRIGKAVARRLS-GFGMKVLAYDPYPDE--------- 177

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
            +F K +G + V      S++E+L+E+D ISLH  L   T HLIN   LA MK  AIL+N
Sbjct: 178 -EFAKEHGVEFV------SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILIN 230

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTR 329
            +RG ++DE AL E LK   +    LDVFE+EP      L E+ N I+ PHI +++K   
Sbjct: 231 TARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAV 290

Query: 330 EGMATLAALNVL 341
             M T+AA NV+
Sbjct: 291 LRMGTMAAQNVI 302

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  249 bits (638), Expect = 3e-80
 Identities = 122/338 (36%), Positives = 174/338 (51%), Gaps = 29/338 (8%)

Query: 14  GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTED 73
            K  V+ST+ +P    +   +++   VE        L+ +  +A      D VI  + + 
Sbjct: 1   MKIVVLSTRKLP--PEVLERLKEKFEVERYEDD---LTPDTELAERLKDADAVITFVNDR 55

Query: 74  WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
               +   L     K  +  + GY+NVD+ AA + GI V N PG  TE  AE A +L LA
Sbjct: 56  IDAEVLEKLPGL--KLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILA 113

Query: 134 AARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
            ARRI E D  +R G +     P+  +G  L+G+T+G+IG GRIG A AR + +GF M +
Sbjct: 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRL-KGFGMKV 172

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD       EK      +++               +DE+L E+D+ISLH  L   T H
Sbjct: 173 LYYDRSPNPEAEK--ELGARYV--------------DLDELLAESDIISLHCPLTPETRH 216

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----G 308
           LIN E LA MK  AILVN +RG ++DE AL++ LK   +   GLDVFE+EP +       
Sbjct: 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLR 276

Query: 309 LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           L    N ++ PHIASA++  R+ MA LA  N+     G
Sbjct: 277 LDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDG 314

Length = 324

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  245 bits (626), Expect = 2e-78
 Identities = 138/336 (41%), Positives = 195/336 (58%), Gaps = 27/336 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E+   VE+   ++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITREIP-ENGIEML-EEHFEVEVWEDEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   +  +N AVGY+N+DV  A + GI V NTPGVLTE TA+ A +L LA 
Sbjct: 58  DCEVFEAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR+VEAD F+R+G +      W P +F+G  + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    EK + A                    ++E+LRE+D +SLH  L K T
Sbjct: 175 RILYYSRTRKPEAEKELGA----------------EYRPLEELLRESDFVSLHVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            +KN ++ PHI SA+   REGMA L A N++   +G
Sbjct: 279 SLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRG 314

Length = 333

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  243 bits (624), Expect = 2e-78
 Identities = 116/325 (35%), Positives = 160/325 (49%), Gaps = 52/325 (16%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           + LL E    V++       LS E+++A+I D  D +I     ++T +    +  A    
Sbjct: 13  LELLREAGIEVDV----APGLSEEELLAIIAD-ADALIVRSATKVTAE----VIEAAPRL 63

Query: 82  --LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
             + RAG        VG +N+DV AA   GI V N PG  T + AE   +L LA AR I 
Sbjct: 64  KVIGRAG--------VGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIP 115

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY- 198
           +AD  +RAG    W    F+G  L+G+T+G++G GRIG   AR     F M ++ YD Y 
Sbjct: 116 QADASLRAG---KWDRKKFMGVELRGKTLGIVGLGRIGREVARRAR-AFGMKVLAYDPYI 171

Query: 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
            A R                          S+DE+L EAD ISLH  L   T  LIN E 
Sbjct: 172 SAERAAAGGV-----------------ELVSLDELLAEADFISLHTPLTPETRGLINAEE 214

Query: 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAI 316
           LA MK  AIL+N +RG ++DE AL + LK   +    LDVFE EP       L  + N I
Sbjct: 215 LAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEP-PPADSPLLGLPNVI 273

Query: 317 VVPHIASASKWTREGMATLAALNVL 341
           + PH+ ++++  +E +A  AA  VL
Sbjct: 274 LTPHLGASTEEAQERVAVDAAEQVL 298

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  238 bits (609), Expect = 2e-76
 Identities = 107/295 (36%), Positives = 149/295 (50%), Gaps = 23/295 (7%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107
             L  +++ AL+ D  D +I   T      + A   +   K       G +N+D++AA K
Sbjct: 28  DDLLADELEALLAD-ADALIVSSTTPVTAEVLAKAPKL--KFIQVAGAGVDNIDLDAAKK 84

Query: 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167
            GI V N PG   E  AE A  L LA  RR+  AD  +R G    W    F G  L+G+T
Sbjct: 85  RGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWLWAG--FPGYELEGKT 142

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG++G GRIG   A+ + + F M ++YYD  +    E+                    R 
Sbjct: 143 VGIVGLGRIGQRVAKRL-QAFGMKVLYYDRTRKPEPEED----------------LGFRV 185

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
            S+DE+L ++DV+ LH  L   T HLIN+E LA MK  A+LVN +RG ++DE AL+  LK
Sbjct: 186 VSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALK 245

Query: 288 QNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
              +    LDVFE EP      L E+ N I+ PHIA  ++  RE MA +A  N+ 
Sbjct: 246 SGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLE 300

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  227 bits (582), Expect = 6e-72
 Identities = 110/309 (35%), Positives = 153/309 (49%), Gaps = 25/309 (8%)

Query: 52  VEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIA 111
            E+ +       D +I  +T    E + AA      KA      G +N+D+ AA K GI 
Sbjct: 35  DEEELLEALADADALIVSVTP-VTEEVLAAAPN--LKAIGRAGAGVDNIDLEAATKRGIL 91

Query: 112 VGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171
           V N PG    + AEL  +L LA ARRI +AD   R G    W    F G  L G+TVG+I
Sbjct: 92  VVNAPGGNAISVAELVLALLLALARRIPDADASQRRG---EWDRKAFRGTELAGKTVGII 148

Query: 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231
           G GRIG A A+ + + F M +I YD Y            G                 S+D
Sbjct: 149 GLGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAGVDGVVG---------------VDSLD 192

Query: 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291
           E+L EAD+++LH  L   T  LIN E LA MK  AIL+N +RG V+DE AL+  L    +
Sbjct: 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252

Query: 292 FRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
               LDVFE+EP +     L ++ N I+ PHI  ++   +E +A + A N++  + G P+
Sbjct: 253 AGAALDVFEEEP-LPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPV 311

Query: 350 WGNPNQVEP 358
             N  +V+ 
Sbjct: 312 VNNAPEVDL 320

Length = 324

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  207 bits (528), Expect = 6e-64
 Identities = 99/282 (35%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 65  GVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTA 124
           G  G   E+    L + L     K  ++   GY+ +DV+A  K GI V NTPG + E TA
Sbjct: 60  GETGPFDEE----LISPLP-PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATA 114

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           + A  L L A R    A+   RAG + G+L      +  +G+T+G++G G IG A AR  
Sbjct: 115 DTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHDP-RGKTLGILGLGGIGKAIARKA 173

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
              F M +IY++  +     +   A                   S+DE+L ++DV+SL+ 
Sbjct: 174 A-AFGMKIIYHNRSRLPEELEKALA---------------TYYVSLDELLAQSDVVSLNC 217

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L   T HLINK+  A MK   I+VN +RG VIDE ALV+ L+   +   GLDVFE+EP 
Sbjct: 218 PLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPE 277

Query: 305 MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           + PGL +M N  ++PH+ + +  T+E M  L   N+   ++ 
Sbjct: 278 VNPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIEAFLET 319

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  205 bits (525), Expect = 9e-64
 Identities = 92/247 (37%), Positives = 130/247 (52%), Gaps = 20/247 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           VG +N+DV  A K GI V NTPG  + + AEL   L L+ AR I  A+  M+ G    W 
Sbjct: 72  VGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLG---KWN 128

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              + G  L+G+T+G+IG GRIG   A++      MN+I YD Y        +       
Sbjct: 129 KKKYKGIELRGKTLGIIGFGRIGREVAKI-ARALGMNVIAYDPYPKDEQAVELGV----- 182

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                      +  S++E+L+ +D ISLH  L   T H+INK+ L  MK  AI++N SRG
Sbjct: 183 -----------KTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRG 231

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            VIDE AL+E LK   +    LDVFE+EP     L E+ N  + PHI +++K  +E +  
Sbjct: 232 GVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTKEAQERIGE 291

Query: 335 LAALNVL 341
             A  ++
Sbjct: 292 ELANKII 298

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  204 bits (521), Expect = 5e-63
 Identities = 111/332 (33%), Positives = 161/332 (48%), Gaps = 42/332 (12%)

Query: 28  RWINLLIEQ----DCRVEIC-TQKKTILSVEDIIALIGDKCDGVIGQ---LTEDWGETLF 79
            + +L IE+    +  VE+   Q +T    +++I    D  D ++ Q   +T +    + 
Sbjct: 9   DFPDLDIEREVLEEAGVELVDAQSRTE---DELIEAAAD-ADALLVQYAPVTAE----VI 60

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
            AL R   K      VG +NVDV AA + GI V N P   TE  A+ A +L LA AR++ 
Sbjct: 61  EALPR--LKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLP 118

Query: 140 EADEFMRAGLYDGWLPNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197
             D  +RAG +D  +     G +  L+G T+G++G GRIG A A+   + F   +I YD 
Sbjct: 119 FLDRAVRAGGWDWTV----GGPIRRLRGLTLGLVGFGRIGRAVAKRA-KAFGFRVIAYDP 173

Query: 198 YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257
           Y                  +G   +   R  S+DE+L  +DV+SLH  L   T HLI+ E
Sbjct: 174 Y----------------VPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAE 217

Query: 258 RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAI 316
            LA MK  A LVN +RG ++DE AL   LK   +    LDV E+EP      L    N I
Sbjct: 218 ALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVI 277

Query: 317 VVPHIASASKWTREGMATLAALNVLGKIKGYP 348
           + PH A  S+ +   +   AA  V+  ++G P
Sbjct: 278 LTPHAAWYSEESLAELRRKAAEEVVRVLRGEP 309

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  202 bits (516), Expect = 3e-62
 Identities = 115/338 (34%), Positives = 163/338 (48%), Gaps = 32/338 (9%)

Query: 17  RVVSTKPMPGTRW--INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           +V+   P        +  L+     VE+     T   +++  AL+ D  D ++  + +  
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEV----VTAAELDEEAALLAD-ADVLVPGMRKVI 55

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L AA  R   +      VG + VD+ AA   GI V N PG   E+ AE A  L LA 
Sbjct: 56  DAELLAAAPRL--RLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLAL 113

Query: 135 ARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
            RR+ EAD  +RAG    W  P       L G+TVG++G G IG A AR +  GF + +I
Sbjct: 114 LRRLPEADRELRAG---RWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLR-GFGVEVI 169

Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253
           YYD               +F     E+     R   +DE+L E+DV+SLH  L   T HL
Sbjct: 170 YYD---------------RFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHL 214

Query: 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSE 311
           I  E LA MK  AIL+N +RG ++DE AL+  L+   +   GLDVF  EP + P   L  
Sbjct: 215 IGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEP-LPPDDPLLR 273

Query: 312 MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           + N I+ PHIA  +  + + MA + A N+   ++G P 
Sbjct: 274 LDNVILTPHIAGVTDESYQRMAAIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  191 bits (489), Expect = 4e-60
 Identities = 88/196 (44%), Positives = 109/196 (55%), Gaps = 24/196 (12%)

Query: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
           +L LA ARRI EAD  +RAG    W P+  +G  L G+TVG+IG GRIG A AR + + F
Sbjct: 2   ALLLALARRIPEADRQVRAG---RWRPDALLGRELSGKTVGIIGLGRIGRAVARRL-KAF 57

Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M +I YD Y     E     Y                  S+DE+L E+DV+SLH  L  
Sbjct: 58  GMKVIAYDRYPKAEAEALGARY-----------------VSLDELLAESDVVSLHLPLTP 100

Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG 308
            T HLIN ERLA MK  AIL+N +RG ++DE AL+  LK   +    LDVFE EP   P 
Sbjct: 101 ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPL-PPD 159

Query: 309 --LSEMKNAIVVPHIA 322
             L E+ N I+ PHIA
Sbjct: 160 HPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  193 bits (492), Expect = 1e-58
 Identities = 95/316 (30%), Positives = 143/316 (45%), Gaps = 23/316 (7%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           L+++   VE+  +    L  E+++    D  D +I + T      +  A      K  + 
Sbjct: 14  LLKEGGEVEVHDE----LLTEELLEAAKD-ADALIVRSTTPVTAEVLEAAPGL--KVIAR 66

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +N+D++AA + GI V N PG  TE+ AEL   L LA ARRI EAD  +RAG +  
Sbjct: 67  RGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKK 126

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
             P       L G+T+GVIG G IG   A +  +   M ++ YD Y      +       
Sbjct: 127 GGPIGL---ELYGKTLGVIGGGGIGGIGAAIA-KALGMGVVAYDPYPNPERAEEGGVEVL 182

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L               + ++    D+I+L P     T H+I  E    +K    + N  
Sbjct: 183 LLDLL------------LLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNAR 230

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 332
            G VI+E AL   L++         V E+ P +   L ++ N I+ PHIA A++  +E M
Sbjct: 231 GGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENM 290

Query: 333 ATLAALNVLGKIKGYP 348
           A  AA N+L  +KG  
Sbjct: 291 AEEAAENLLAFLKGGT 306

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  192 bits (491), Expect = 2e-58
 Identities = 91/274 (33%), Positives = 136/274 (49%), Gaps = 34/274 (12%)

Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTET 122
            DGV+ Q T  + E ++  L+  G K  +  + G + +D++ A + G+ + N P      
Sbjct: 45  YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104

Query: 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
            AE A + +L   R   E D  +  G +  W P L +G  ++  TVG+IG GRIGSA A+
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFR-WAPGL-IGREIRDLTVGIIGTGRIGSAAAK 162

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +GF   +I YD Y    LEKF+  Y                  S++++L++AD+ISL
Sbjct: 163 IF-KGFGAKVIAYDPYPNPELEKFLLYY-----------------DSLEDLLKQADIISL 204

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H  L K  +HLIN E  A MK  AILVN +RG ++D  AL++ L    +    LD +E+E
Sbjct: 205 HVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENE 264

Query: 303 -PYMKPGLS-------------EMKNAIVVPHIA 322
             Y     S              M N ++ PHIA
Sbjct: 265 TGYFNKDWSGKEIEDEVLKELIAMPNVLITPHIA 298

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  196 bits (500), Expect = 1e-57
 Identities = 115/314 (36%), Positives = 154/314 (49%), Gaps = 60/314 (19%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG----QLTEDWGETLFAALS----- 83
           +++    VE+    KT L  E+++ +IGD  D +I     ++T +    +  A       
Sbjct: 16  ILKDAPGVEVDV--KTGLDKEELLEIIGD-YDALIVRSATKVTAE----VLEAAKNLKVI 68

Query: 84  -RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD 142
            RAG        VG +NVDV AA + GI V N P   T + AE   +L LA AR I +A 
Sbjct: 69  GRAG--------VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAH 120

Query: 143 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA-RMMVEGFKMNLIYYDLY--- 198
             ++AG    W    F+G  L G+T+G+IG GRIGS  A R     F M +I YD Y   
Sbjct: 121 ASLKAGK---WERKKFMGVELYGKTLGIIGLGRIGSEVAKRAK--AFGMKVIAYDPYISP 175

Query: 199 -QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257
            +A +L              G + V      S+DE+L  AD I+LH  L   T  LI  E
Sbjct: 176 ERAAQL--------------GVELV------SLDELLARADFITLHTPLTPETRGLIGAE 215

Query: 258 RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAI 316
            LA MK    ++NC+RG +IDE AL E LK   +    LDVFE EP    P L E+ N +
Sbjct: 216 ELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSP-LFELPNVV 274

Query: 317 VVPHIASASKWTRE 330
           V PH+  AS  T E
Sbjct: 275 VTPHLG-AS--TAE 285

Length = 526

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  188 bits (480), Expect = 5e-57
 Identities = 94/251 (37%), Positives = 137/251 (54%), Gaps = 24/251 (9%)

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           ++  VGY+ +D++AA   GI V NTPGVLT+  A+LA  L LA  RRI  AD F+RAG  
Sbjct: 69  ASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAG-- 126

Query: 151 DGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
             W    F +   + G+ VG++G GRIG A AR  +E F M + Y+      R  K    
Sbjct: 127 -RWPKGAFPLTRKVSGKRVGIVGLGRIGRAIAR-RLEAFGMEIAYHG-----RRPK---- 175

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
                       V ++  +S+ E+  E+DV+ +       T HL+N E L  +  + +LV
Sbjct: 176 ----------PDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLV 225

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329
           N +RG V+DE AL+  L++  +   GLDVFE+EP +   L ++ N ++ PHIASA+  TR
Sbjct: 226 NVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETR 285

Query: 330 EGMATLAALNV 340
             M  L   N+
Sbjct: 286 RAMGDLVLANL 296

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  186 bits (474), Expect = 6e-56
 Identities = 95/333 (28%), Positives = 144/333 (43%), Gaps = 41/333 (12%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
             +L      VEI T    +L+ ++   L     D ++   T+     L       G K 
Sbjct: 17  KEILKAGGVDVEIVT---YLLNDDETAELAKG-ADAILTAFTDKIDAELLDKA--PGLKF 70

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL 149
            S  A GY+N+D++ A + GI V N P       AE   +L LA  R     DE  +   
Sbjct: 71  ISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQD 130

Query: 150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
                  +  G  L+ QTVGV+G G+IG A A+   +GF M +I YD ++   LE     
Sbjct: 131 LQ-DAGVI--GRELEDQTVGVVGTGKIGRAVAQRA-KGFGMKVIAYDPFRNPELEDKGVK 186

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
           Y                  S++E+ + +D+ISLH  L    +H+IN+E    MKK  I++
Sbjct: 187 Y-----------------VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIII 229

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------------KPGLSEMKNA 315
           N +RG ++D  AL+E L    +F  GLDV EDE                    L    N 
Sbjct: 230 NTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNV 289

Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYP 348
           I+ PH A  +    + M  ++  N++  ++G  
Sbjct: 290 IITPHTAFYTDDALKNMVEISCENIVDFLEGEE 322

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  186 bits (474), Expect = 7e-56
 Identities = 99/287 (34%), Positives = 154/287 (53%), Gaps = 24/287 (8%)

Query: 66  VIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTA 124
           +I  +T ++ +  F        K  +   +GY+NVD+ AA ++G+ V   PG V  +  A
Sbjct: 51  IIASVTPNFDKEFFEYNDGL--KLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVA 108

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           E A +L L   R+I +A E ++ G +       FVG+ L G+TVG+IG G IGS  A ++
Sbjct: 109 EHAVALILTVLRKINQASEAVKEGKWT--ERANFVGHELSGKTVGIIGYGNIGSRVAEIL 166

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            EGF   ++ YD Y +           + +K  G +PV      S++E+L E+D+ISLH 
Sbjct: 167 KEGFNAKVLAYDPYVSE----------EVIKKKGAKPV------SLEELLAESDIISLHA 210

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L + TYH+IN++  + MKK  ILVN +RG +IDE AL+E LK   +   GLDV E+EP 
Sbjct: 211 PLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEP- 269

Query: 305 MKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           +K    L   +N ++ PHI + +  +  GM      ++   + G   
Sbjct: 270 IKADHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIEDFLAGKEP 316

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  184 bits (471), Expect = 1e-55
 Identities = 90/255 (35%), Positives = 132/255 (51%), Gaps = 30/255 (11%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY-- 150
           +A GYNNVD+ AA + GI V N PG  T++ A+   +L LA AR +   ++ ++AG +  
Sbjct: 72  LATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQK 131

Query: 151 -DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVT 208
              +    +    L G+T+G+IG G IG A AR+    F M +++ +   A  L E +V 
Sbjct: 132 SPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARI-ARAFGMKVLFAERKGAPPLREGYV- 189

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                               S+DE+L ++DVISLH  L   T +LIN E LA MK  AIL
Sbjct: 190 --------------------SLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAIL 229

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIVVPHIASAS 325
           +N +RG ++DE AL + L    +   GLDV   EP  +     L    N I+ PHIA AS
Sbjct: 230 INTARGGLVDEQALADALNSGKIAGAGLDVLSQEP-PRADNPLLKAAPNLIITPHIAWAS 288

Query: 326 KWTREGMATLAALNV 340
           +  R+ +  +   N+
Sbjct: 289 REARQRLMDILVDNI 303

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  180 bits (460), Expect = 7e-54
 Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 21/233 (9%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  NVDV AA + GI V NTPG   E  AE    L LA  R I  A   ++ G +     
Sbjct: 77  GPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYY 136

Query: 156 NL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           N    G  L+G+TVG++G G IG   A+ + + F   ++ YD         +V    + +
Sbjct: 137 NYDGYGPELRGKTVGIVGFGAIGRRVAKRL-KAFGAEVLVYD--------PYVDP--EKI 185

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           +A+G + V      S++E+L+ +DV+SLH  L   T  +I  E  A MK  A  +N +R 
Sbjct: 186 EADGVKKV------SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARA 239

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASAS 325
            ++DE AL+E L++  +    LDVF +EP +     L ++ N  + PHIA A+
Sbjct: 240 GLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAGAT 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  181 bits (460), Expect = 7e-54
 Identities = 102/287 (35%), Positives = 151/287 (52%), Gaps = 26/287 (9%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGK--AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTE 121
           +G++G      GE + AAL     K  A S ++VGY+N DV+A     I + +TP VLTE
Sbjct: 47  EGLLGS-----GEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTE 101

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           T A+   +L L+ ARR+VE  E ++AG +   +   + G  +  +T+G++G GRIG A A
Sbjct: 102 TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALA 161

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           +    GF M ++Y         E+   A                R   +D +L+E+D + 
Sbjct: 162 QRAHFGFNMPILYNARRHHKEAEERFNA----------------RYCDLDTLLQESDFVC 205

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +   L   T+HL   E+ A MK  AI +N  RGPV+DE AL+  L++  +   GLDVFE 
Sbjct: 206 IILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQ 265

Query: 302 EPYMK--PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           EP     P LS + N + VPHI SA+  TR  MA  A  N++  ++G
Sbjct: 266 EPLSVDSPLLS-LPNVVAVPHIGSATHETRYNMAACAVDNLIDALQG 311

Length = 323

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  178 bits (454), Expect = 4e-53
 Identities = 114/339 (33%), Positives = 159/339 (46%), Gaps = 32/339 (9%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +VV T  +     + LL +  C V      +  LS E+++    D  DG++  + +    
Sbjct: 3   KVVITHKVH-PEVLELL-KPHCEVISNQTDEP-LSREELLRRCKD-ADGLMAFMPDRIDA 58

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
               A  R   K  +    GY+N DV A    GI V   P +LTE TAEL   L +   R
Sbjct: 59  DFLDACPRL--KIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
            I+  D F+R+G + GW P  + G  L G+TVG++G G +G A AR +  GF   L+YYD
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFY-GTGLDGKTVGILGMGALGRAIARRLS-GFGATLLYYD 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                 L++   A  Q L           R   +DE+L  +D + L   L   T HLIN 
Sbjct: 175 ---PHPLDQ---AEEQALNL---------RRVELDELLESSDFLVLALPLTPDTLHLINA 219

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP--------G 308
           E LA MK  A+LVN  RG V+DE A+ E LK   +     DVFE E + +P         
Sbjct: 220 EALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQE 279

Query: 309 LSEMK-NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           L +     +  PHI SA    R  +   AALN+L  ++G
Sbjct: 280 LLDQHDRTVFTPHIGSAVDEVRLEIELEAALNILQALQG 318

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  184 bits (468), Expect = 4e-53
 Identities = 122/370 (32%), Positives = 185/370 (50%), Gaps = 67/370 (18%)

Query: 17  RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLT 71
           +V+   P+ P    I++L +    V++    +T LS E+++ +I D  D +I     ++T
Sbjct: 1   KVLIADPISPDG--IDILEDVGVEVDV----QTGLSREELLEIIPDY-DALIVRSATKVT 53

Query: 72  EDWGETLFAALS------RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAE 125
           E+    + AA        RAG        VG +N+D+ AA   GI V N P   T + AE
Sbjct: 54  EE----VIAAAPKLKVIGRAG--------VGVDNIDIEAATARGILVVNAPTGNTISAAE 101

Query: 126 LAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV 185
            A ++ LAAAR I +AD  ++ G    W    F+G  L G+T+GVIG GRIGS  A+   
Sbjct: 102 HALAMLLAAARNIPQADASLKEG---EWDRKAFMGTELYGKTLGVIGLGRIGSIVAKR-A 157

Query: 186 EGFKMNLIYYDLY----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           + F M ++ YD Y    +A +L                     +    +DE+L  AD I+
Sbjct: 158 KAFGMKVLAYDPYISPERAEQL-------------------GVELVDDLDELLARADFIT 198

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +H  L   T  LI  E LA MKK  I+VNC+RG +IDE AL E L++  +    LDVFE 
Sbjct: 199 VHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEK 258

Query: 302 EPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN------- 354
           EP     L ++ N I  PH+ ++++  +E +AT  A  VL  +KG P+    N       
Sbjct: 259 EPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318

Query: 355 ---QVEPFLN 361
              +++P+L+
Sbjct: 319 VMEKLKPYLD 328

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  172 bits (437), Expect = 1e-50
 Identities = 93/260 (35%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD+ A  + GI V N  G  TE  AEL   L++   R IV  D  +RAG      
Sbjct: 78  TGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAG----GT 133

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
               +G  L G+TVG++G G IG   AR+  + F   ++ Y      R EK      +  
Sbjct: 134 KAGLIGRELAGKTVGIVGTGAIGLRVARL-FKAFGCKVLAYS-----RSEK------EEA 181

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           KA G   + +    S+DE+L E+D++SLH  L+  T  LI KE+LA MK+ AIL+N +RG
Sbjct: 182 KALG---IEYV---SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARG 235

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGM 332
           PV+D  AL + L +  +   G+DVF+ EP +     L    N I+ PH+A A   T E M
Sbjct: 236 PVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFA---TEEAM 292

Query: 333 ATLAAL---NVLGKIKGYPI 349
              A +   N+   + G P 
Sbjct: 293 EKRAEIVFDNIEAWLAGKPQ 312

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  169 bits (430), Expect = 3e-49
 Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 21/207 (10%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G+NNVD+ AA + GI V   P       AE A +L LA  R+I  A   +R G +   L 
Sbjct: 78  GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFS--LD 135

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
            L +G  L G+TVGVIG G+IG A+AR++  GF   ++ YD Y    L K    Y     
Sbjct: 136 GL-LGFDLHGKTVGVIGTGKIGQAFARILK-GFGCRVLAYDPYPNPELAKLGVEYV---- 189

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
                         +DE+L E+D+ISLH  L   T+HLIN E +A MK   +L+N SRG 
Sbjct: 190 -------------DLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGG 236

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE 302
           +ID  AL+E LK   +  +GLDV+E+E
Sbjct: 237 LIDTKALIEALKSGKIGGLGLDVYEEE 263

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  168 bits (428), Expect = 5e-49
 Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 53/255 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE------FMRAG 148
            G++++D+ A  + GIAV N P     T AE A +L LA +R++ EA E      F +AG
Sbjct: 72  TGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAG 131

Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           L          G  L G+T+GV+G GRIG   AR+   GF M ++ YD+      E+   
Sbjct: 132 L---------RGFELAGKTLGVVGTGRIGRRVARIAR-GFGMKVLAYDVVPD---EELAE 178

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
             G              R  S++E+L+E+D+ISLH      T+HLIN+E  A MK  A+L
Sbjct: 179 RLGF-------------RYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVL 225

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-------------------- 308
           +N +RG V+D  ALV  LK+  +   GLDV E E  ++                      
Sbjct: 226 INTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADH 285

Query: 309 -LSEMKNAIVVPHIA 322
            L    N I+ PH+A
Sbjct: 286 ALLRKPNVIITPHVA 300

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  163 bits (415), Expect = 3e-47
 Identities = 90/260 (34%), Positives = 126/260 (48%), Gaps = 23/260 (8%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +   ++D+ AA + GI V  T G     TAEL  +L LA AR + E D  +RA
Sbjct: 71  KLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALARNLPEEDAALRA 129

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G   GW   L  G  L G+T+G++G GRIG+  AR+  + F M                V
Sbjct: 130 G---GWQTTL--GTGLAGKTLGIVGLGRIGARVARIG-QAFGMR---------------V 168

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A+   L A        + A S +E+   +DV+SLH VL   T  L+  E LA MK  A+
Sbjct: 169 IAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTAL 228

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAIVVPHIASASK 326
           LVN SRGP++DE AL+  L+   +    LDVF+ EP      L  + N ++ PHI   ++
Sbjct: 229 LVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTE 288

Query: 327 WTREGMATLAALNVLGKIKG 346
              EG    A  N+   + G
Sbjct: 289 EAYEGFYGQAVENIAAWLAG 308

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  161 bits (411), Expect = 7e-47
 Identities = 89/250 (35%), Positives = 123/250 (49%), Gaps = 34/250 (13%)

Query: 81  ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
           A++RAG         G NN+DV+AA+K GI V NTPG      AEL  ++ LA +R I++
Sbjct: 53  AIARAG--------AGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQ 104

Query: 141 ADEFMRAGLYDG------WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           A +++  G  D            FVG  L+G+T+GVIG G IG   A        M +I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANA-ALALGMKVIG 163

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y +      ++   Q             R +S++E+L  AD I+LH  L   T  LI
Sbjct: 164 YDPYLSVEAAWKLSVEVQ-------------RVTSLEELLATADYITLHVPLTDETRGLI 210

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N E LA MK  AIL+N +RG ++DE AL+E L +  +     D  E        L  + N
Sbjct: 211 NAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPEPA-----LLGHLPN 265

Query: 315 AIVVPHI-AS 323
            I  PH+ AS
Sbjct: 266 VIATPHLGAS 275

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  158 bits (401), Expect = 3e-45
 Identities = 91/298 (30%), Positives = 134/298 (44%), Gaps = 49/298 (16%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVN 103
           T  K  L++E+     G     ++G         L   L  AG K  S  ++GY+++D++
Sbjct: 28  TLTKEPLTLENAHLAEGYDGISILG--KSKISAELLEKLKEAGVKYISTRSIGYDHIDLD 85

Query: 104 AANKYGIAVGNTP----GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           AA + GI V N       V     A+    L L A R+  +     RA + D  L  L  
Sbjct: 86  AAKELGIKVSNVTYSPNSV-----ADYTVMLMLMALRKYKQI--MKRAEVNDYSLGGL-Q 137

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+  TVGVIG GRIG A  + +  GF   ++ YD Y    ++K+   Y         
Sbjct: 138 GRELRNLTVGVIGTGRIGQAVIKNL-SGFGCKILAYDPYPNEEVKKYAE-Y--------- 186

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
                     +D + +E+D+I+LH  L + TYHLINKE +A MK   I++N +RG +ID 
Sbjct: 187 --------VDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDT 238

Query: 280 VALVEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIA 322
            AL+E L+   +    LDV E E                 +   L    N I+ PH+A
Sbjct: 239 EALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI-LRSFPNVILTPHMA 295

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  155 bits (393), Expect = 4e-44
 Identities = 83/264 (31%), Positives = 123/264 (46%), Gaps = 28/264 (10%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G +++ +    + G+ V N  G  +   AE A +L LA A+RIVE D  +R G++ G
Sbjct: 67  PSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIWHG 124

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
                     L+G+TVG++G G IG   AR++ + F M                V    +
Sbjct: 125 RAGEEPESKELRGKTVGILGYGHIGREIARLL-KAFGMR---------------VIGVSR 168

Query: 213 FLKANGEQPVTWKRASSM-DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             K   ++   +    S  DE L +ADV+ +   L K T  LI    LA MK  AILVN 
Sbjct: 169 SPKE--DEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNV 226

Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF----EDEPYMKP---GLSEMKNAIVVPHIASA 324
            RGPV+DE AL E LK+ P+    +DV+         + P      E+ N I+ PH A  
Sbjct: 227 GRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGW 286

Query: 325 SKWTREGMATLAALNVLGKIKGYP 348
           ++ T       AA N+   ++G P
Sbjct: 287 TEETFRRRIDEAAENIRRYLRGEP 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  148 bits (375), Expect = 3e-41
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 24/231 (10%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
           GI V +      E  AE   +  L A RRI       RAG  D   P    G  L G+TV
Sbjct: 95  GILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAG-RDWGWPTRRGGRGLYGRTV 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A   + +  F + ++ YD         ++ A      A G          
Sbjct: 154 GIVGFGRIGRAVVEL-LRPFGLRVLVYD--------PYLPA--AEAAALGV------ELV 196

Query: 229 SMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           S+DE+L  +DV+SLH P+  +T   +I+   LA M+  A  +N +RG ++DE AL+  L+
Sbjct: 197 SLDELLARSDVVSLHAPLTPETR-GMIDARLLALMRDGATFINTARGALVDEAALLAELR 255

Query: 288 QNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLA 336
                R  LDV + EP + P   L  + N ++ PHIA ++   R  +   A
Sbjct: 256 SG-RLRAALDVTDPEP-LPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYA 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  142 bits (359), Expect = 3e-39
 Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 34/258 (13%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            A G NNVD+  A K GIAV N  G  TE+ A+   ++ L+   RI   D ++++G Y  
Sbjct: 70  TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSE 129

Query: 153 WLPNLFVG-----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
               +F         +KG+  G+IG G IG   A++  + F   ++YY      + E++ 
Sbjct: 130 --SPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI-AQAFGAKVVYYSTSGKNKNEEY- 185

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                                S++E+L+ +D+IS+H  L++ T +LI  + L  +K  AI
Sbjct: 186 ------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNA---IVVPHIA 322
           L+N  RG +++E  L + L +  +   GLDV E EP  K  P LS +KN    ++ PHIA
Sbjct: 228 LINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLS-IKNKEKLLITPHIA 285

Query: 323 SASKWTREGMATLAALNV 340
            ASK  R+ +      N+
Sbjct: 286 WASKEARKTLIEKVKENI 303

Length = 311

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  139 bits (353), Expect = 2e-38
 Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 29/233 (12%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G N VD++AA K GI V N P   T + AEL     +  ARR+ + +     G    W 
Sbjct: 73  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG---IWN 129

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
            +    + ++G+T+G+IG G IGS  + +  E   M +I+YD+  A +L       G   
Sbjct: 130 KSATGSHEVRGKTLGIIGYGHIGSQLSVL-AEALGMRVIFYDI--AEKL-----PLG--- 178

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                     ++ SS++E+L EAD ++LH     +T ++I  E +A MKK AIL+N SRG
Sbjct: 179 --------NARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            V+D  AL E L+   +    +DVF        EP+  P L  + N I+ PHI
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSP-LQGLPNVILTPHI 282

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  136 bits (345), Expect = 8e-37
 Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 48/232 (20%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAE-LAASLSLAAARRIVEADEFMRAGLYDGWL 154
           G +++D +   + GI   N PG    + AE + ++L + A R+                 
Sbjct: 67  GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQRQ----------------- 109

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  LKG+TVG++G G +GS  AR  +E   MN++  D  +A              
Sbjct: 110 -----GFSLKGKTVGIVGVGNVGSRLARR-LEALGMNVLLCDPPRAEAEGDPGFV----- 158

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVN 270
                         S++E+L EAD+I+LH  L +     TYHL++++ LA +K   IL+N
Sbjct: 159 --------------SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILIN 204

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
            SRG VID  AL+  L++    RV LDV+E+EP +   L + K  I  PHIA
Sbjct: 205 ASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLELLD-KVDIATPHIA 255

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  128 bits (323), Expect = 7e-34
 Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 28/256 (10%)

Query: 50  LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           L+ E++    G   D VI +      +         G K      VG+N++D+ AA + G
Sbjct: 34  LNDENVHLAKG--HDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELG 91

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQT 167
             +   P       AELA +L++  +R             +  D   P +F    ++  T
Sbjct: 92  FKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVD---PFMF-SKEIRNST 147

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG+IG GRIG   A++  +G    +I YD+Y +   +  VT                   
Sbjct: 148 VGIIGTGRIGLTAAKLF-KGLGAKVIGYDIYPSDAAKDVVTFV----------------- 189

Query: 228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            S+DE+L+++D+ISLH P +      LINKE ++ MK  AIL+N +RG + DE A++E L
Sbjct: 190 -SLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEAL 248

Query: 287 KQNPMFRVGLDVFEDE 302
           +   +   G DV  +E
Sbjct: 249 ESGKLAGFGTDVLNNE 264

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  124 bits (312), Expect = 2e-32
 Identities = 83/268 (30%), Positives = 124/268 (46%), Gaps = 40/268 (14%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GI V N  G  T + A+   +L LA A R+ +  + + AG    W
Sbjct: 74  ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAG---RW 130

Query: 154 -------LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
                  L + F    L+G+T+G++G G +G A AR+  E F M ++             
Sbjct: 131 QQSSQFCLLD-FPIVELEGKTLGLLGHGELGGAVARL-AEAFGMRVLI------------ 176

Query: 207 VTAYGQFLKANGEQPVTWKRASSM--DEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                      G+ P    R   +  DE+L + D ++LH  L + T HLI    LA MK 
Sbjct: 177 -----------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSE-MKNAIVVPHI 321
            A+L+N +RG ++DE AL + L+   +     DV   EP +   P L+  +   IV PH 
Sbjct: 226 GALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHS 285

Query: 322 ASASKWTREGMATLAALNVLGKIKGYPI 349
           A  S+  R+ +    A N      G P+
Sbjct: 286 AWGSREARQRIVGQLAENARAFFAGKPL 313

Length = 317

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  125 bits (317), Expect = 3e-32
 Identities = 93/288 (32%), Positives = 137/288 (47%), Gaps = 46/288 (15%)

Query: 47  KTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAALSR--AGGKAFSNMAVGYNN 99
           K  L  E++I  I D     IG     QLTE+    + AA  +  A G  F    +G N 
Sbjct: 39  KGALDEEELIEAIKDA--HFIGIRSRTQLTEE----VLAAAEKLVAIG-CFC---IGTNQ 88

Query: 100 VDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           VD++AA K GI V N P   T + AEL     +   R I E +     G   GW  +   
Sbjct: 89  VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG---GWNKSAAG 145

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
              ++G+T+G++G G IG+  + ++ E   M + +YD+    +L       G     N  
Sbjct: 146 SFEVRGKTLGIVGYGHIGTQLS-VLAESLGMRVYFYDI--EDKL-----PLG-----NAR 192

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
           Q        S++E+L ++DV+SLH     +T ++I  E LA MK  AIL+N SRG V+D 
Sbjct: 193 Q------VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246

Query: 280 VALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            AL + LK   +    +DVF        +P+  P L  + N I+ PHI
Sbjct: 247 DALADALKSGHLAGAAIDVFPVEPKSNGDPFESP-LRGLDNVILTPHI 293

Length = 409

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  120 bits (302), Expect = 4e-31
 Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 41/246 (16%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GIAV N  G  + T  E    +  A    ++    + R  L D W
Sbjct: 73  ATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMG---WYRDQLSDRW 129

Query: 154 LPNLFVGNL---------LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                             ++G T+GV G G +G+   R+  +   M ++Y +   A+   
Sbjct: 130 ATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRL-AQALGMKVLYAEHKGASVCR 185

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
           +  T +                    +EVL++AD+++LH  L +TT +LIN E LA MK 
Sbjct: 186 EGYTPF--------------------EEVLKQADIVTLHCPLTETTQNLINAETLALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNAIVVP 319
            A L+N  RGP++DE AL++ L+   +    LDV   EP  K          + N ++ P
Sbjct: 226 TAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITP 285

Query: 320 HIASAS 325
           HIA AS
Sbjct: 286 HIAWAS 291

Length = 314

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  118 bits (297), Expect = 3e-30
 Identities = 71/258 (27%), Positives = 104/258 (40%), Gaps = 39/258 (15%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + +      +  + + N  G+     AE      LA AR++              
Sbjct: 66  TSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR--- 122

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-- 210
           W     V   L G+TV ++G G IG   AR   + F M                V     
Sbjct: 123 WQRRGPVR-ELAGKTVLIVGLGDIGREIARRA-KAFGMR---------------VIGVRR 165

Query: 211 -GQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAIL 268
            G+      ++  T      +DE+L EAD V++  P L   T  L N ER A MK  A+L
Sbjct: 166 SGRPAPPVVDEVYT---PDELDELLPEADYVVNALP-LTPETRGLFNAERFAAMKPGAVL 221

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIA 322
           +N  RG V+DE AL+E L+   +    LDVFE+EP     L        + N I+ PHI+
Sbjct: 222 INVGRGSVVDEDALIEALESGRIAGAALDVFEEEP-----LPADSPLWDLPNVIITPHIS 276

Query: 323 SASKWTREGMATLAALNV 340
             S    E +  +   N+
Sbjct: 277 GDSPSYPERVVEIFLENL 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score =  118 bits (297), Expect = 4e-30
 Identities = 67/274 (24%), Positives = 120/274 (43%), Gaps = 35/274 (12%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETT 123
           DG+         E ++  L+  G K  +  + G++  D+  A KY + + N P    E+ 
Sbjct: 47  DGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESI 106

Query: 124 AELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
           AE   + ++   R   +    +R   +D  W P + +   +K   V VIG GRIG A A+
Sbjct: 107 AEFTVTQAINLVRHFNQIQTKVR--EHDFRWEPPI-LSRSIKDLKVAVIGTGRIGLAVAK 163

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +G+  +++ YD +   +   +V                     +++E +  AD+++L
Sbjct: 164 IFAKGYGSDVVAYDPFPNAKAATYVD-----------------YKDTIEEAVEGADIVTL 206

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H    K  ++L N +     KK A+ VNC+RG ++D  AL++ L    +    LD +E E
Sbjct: 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFE 266

Query: 303 PYMKPG--------------LSEMKNAIVVPHIA 322
             + P               L   ++ I+ PHIA
Sbjct: 267 RPLFPSDQRGQTINDPLLESLINREDVILTPHIA 300

Length = 332

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  117 bits (294), Expect = 6e-30
 Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 36/245 (14%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  N+D+  A + GI + N P    +   E A  + LA   ++  AD+ +R G+   W  
Sbjct: 72  GLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI---WDR 128

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
               G  L G+TVG+IG G +G A+A+ +  GF   +I YD Y+             F  
Sbjct: 129 EGNRGVELMGKTVGIIGYGNMGKAFAKRL-SGFGCKVIAYDKYK------------NFGD 175

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
           A  EQ        S++ + +EAD++SLH  L   T  ++NKE +++ KK    +N +RG 
Sbjct: 176 AYAEQ-------VSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPG----LSEMKNAIVVPHIASAS 325
           V+    LV+ LK   +    LDV E E       + +P     L +    I+ PHIA   
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAG-- 286

Query: 326 KWTRE 330
            WT E
Sbjct: 287 -WTFE 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score =  111 bits (280), Expect = 7e-28
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 44/300 (14%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE---TLFAALSRAGGKAFSNMAVG 96
           VE+ T K+ +LS   +     D+     G  T  +G+    ++  L   G K  +    G
Sbjct: 26  VEVTTSKE-LLSSATV-----DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79

Query: 97  YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN 156
           ++  D++ A K+ I + N P    ET AE + S++L   RR  + +  ++A  +      
Sbjct: 80  FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE- 138

Query: 157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA 216
             +   +K  TV +IG GRIG+A A++   GF   +  YD Y    L+        FL  
Sbjct: 139 -IMSKPVKNMTVAIIGTGRIGAATAKIYA-GFGATITAYDAYPNKDLD--------FL-- 186

Query: 217 NGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
                 T+K   S+ E +++AD+ISLH   +K +YHL +K     +KK AILVN +RG V
Sbjct: 187 ------TYK--DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDE-PYM----------KPGLSEM---KNAIVVPHIA 322
           I+   L+  +    +    +D +E+E  Y              L E+   +  +V PHIA
Sbjct: 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIA 298

Length = 330

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  110 bits (277), Expect = 1e-27
 Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 26/230 (11%)

Query: 114 NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           N  G   ET AE A +L LA  R++       RA  +D       +  LL+G TV ++GA
Sbjct: 78  NAAGAYAETVAEHALALLLAGLRQLPA---RARATTWDPAEE-DDLVTLLRGSTVAIVGA 133

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           G IG A   ++   F   +I             V   G+     G        A  +DEV
Sbjct: 134 GGIGRALIPLLA-PFGAKVIA------------VNRSGR--PVEGADETV--PADRLDEV 176

Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
             +AD + L   L   T HL++   LA MK  A LVN +RGP++D  ALV+ L+   +  
Sbjct: 177 WPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAG 236

Query: 294 VGLDVFEDEPYMKPG---LSEMKNAIVVPHIASASKWTREGMATLAALNV 340
             LDV + EP   P    L  + NA++ PH+A+  +  R  +A   A NV
Sbjct: 237 AALDVTDPEPL--PDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENV 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score =  107 bits (268), Expect = 8e-26
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L  +T GV+GAG +G    R++  G    ++  D  +           G F+        
Sbjct: 114 LAERTYGVVGAGHVGGRLVRVL-RGLGWKVLVCDPPRQEAEGD-----GDFV-------- 159

Query: 223 TWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVID 278
                 S++ +L E DVISLH  L K     T HL+++  LA+++  A L+N SRG V+D
Sbjct: 160 ------SLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213

Query: 279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
             AL E L         LDV+E EP +   L++    I  PHIA  S
Sbjct: 214 NQALREALLSGEDLDAVLDVWEGEPQIDLELAD-LCTIATPHIAGYS 259

Length = 381

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  104 bits (262), Expect = 2e-25
 Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 46/242 (19%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + + +    K GI + N  G+ +   AE      L   + + +A +  +      
Sbjct: 67  YSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKK--- 123

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI----------YYDLYQATR 202
           W  +  +  L  G+T+  +G G IG   A+ + + F M +I          Y+D      
Sbjct: 124 WKMDSSLLEL-YGKTILFLGTGSIGQEIAKRL-KAFGMKVIGVNTSGRDVEYFD------ 175

Query: 203 LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLAT 261
            + +            E          +DEVL+EAD V+++ P L + T+HL ++     
Sbjct: 176 -KCY---------PLEE----------LDEVLKEADIVVNVLP-LTEETHHLFDEAFFEQ 214

Query: 262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVP 319
           MKK A+ +N  RGP +DE AL+E LK   +    LDVFE+EP  K  P L ++ N ++ P
Sbjct: 215 MKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSP-LWDLDNVLITP 273

Query: 320 HI 321
           HI
Sbjct: 274 HI 275

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  103 bits (259), Expect = 8e-25
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGLYD 151
           VG   VDV+AA K+GI V   P   T    + AE+A  L L   R+  E    ++A    
Sbjct: 91  VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG 150

Query: 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR---LEKFVT 208
              P   +G+ L G+TV ++G G IG   A+ +   F + L+      ATR     +   
Sbjct: 151 E--P---IGDTLFGKTVFILGYGAIGIELAKRL-RPFGVKLL------ATRRSWTSEPED 198

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                     +          + E   EAD++ L   L K T  ++N E L++MKK A+L
Sbjct: 199 GLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALL 258

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           VN +RG ++D  A++  L+   +  + +DV   EP+  P   + +  N I+ PH+A
Sbjct: 259 VNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF-DPDDPILKHPNVIITPHVA 313

Length = 347

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  100 bits (252), Expect = 7e-24
 Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 23/235 (9%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AAN  GI V    G    + AE    + L   R  V   E    G   GW 
Sbjct: 93  IGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEG---GWN 149

Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     L+G+TVG +GAGRIG    R + + F ++L+YYD ++             
Sbjct: 150 VADVVKRAYDLEGKTVGTVGAGRIGLRVLRRL-KPFDVHLLYYDRHR------------- 195

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L    E+ +   R + +++++ + DV++++  L   T  L NKE L+ MKK A LVN +
Sbjct: 196 -LPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTA 254

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+ E L+   +     DV+  +P  K  P    M N  + PHI+  +
Sbjct: 255 RGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHP-WRTMPNNAMTPHISGTT 308

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  100 bits (250), Expect = 2e-23
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 35/241 (14%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA+++GI V    G  + + AE    + LA  R    +      G   GW 
Sbjct: 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG---GW- 178

Query: 155 PNLF-VGNL---LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            N+    +    L+G TVG++GAGRIG A  R + + F + L Y D ++           
Sbjct: 179 -NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPFDVKLHYTDRHR----------- 225

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              L    EQ +      S D ++   DV+++H  L   T HL + + L+ MK+ + LVN
Sbjct: 226 ---LPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIASA 324
            +RG ++D  A+V  L+   +     DV+       D P+       M    + PHI+  
Sbjct: 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRT-----MPRNGMTPHISGT 337

Query: 325 S 325
           +
Sbjct: 338 T 338

Length = 385

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 96.9 bits (242), Expect = 9e-23
 Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 37/235 (15%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQT 167
           G+ + N  GV   +TAELA +L LA+ R +         G ++    P+L        + 
Sbjct: 81  GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSL------ADRR 134

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTW 224
           V ++G G IG A  R                   RL  F   VT   +  +  GEQ    
Sbjct: 135 VLIVGYGSIGRAIER-------------------RLAPFEVRVTRVARTARP-GEQVHGI 174

Query: 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
                +  +L EADV+ L   L   T  L++ E LA M   A+LVN +RGPV+D  ALV 
Sbjct: 175 ---DELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVA 231

Query: 285 HLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAA 337
            L    + R  LDV + EP + PG  L      ++ PH+  A+         L  
Sbjct: 232 ELASGRL-RAALDVTDPEP-LPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVR 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 83.4 bits (206), Expect = 5e-18
 Identities = 59/262 (22%), Positives = 121/262 (46%), Gaps = 29/262 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K   +++ G +++DV+   +  + + +  G  + + AE A +L LA A+ I E +  M+ 
Sbjct: 51  KMIQSLSAGVDHIDVSGIPE-NVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKN 109

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G +    P      LL  +++G++G G IG   A ++ + F MN+  Y     TR     
Sbjct: 110 GNFKQ-SPT----KLLYNKSLGILGYGGIGRRVA-LLAKAFGMNIYAY-----TR----- 153

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
           +     + +   +P         +++++++D + +   L   T  +IN + L+  +K   
Sbjct: 154 SYVNDGISSIYMEP---------EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLA 204

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA-SK 326
           ++N +R  V+D+  ++  L+ +       DV+ +EP +    +   N I+ PH+A   S 
Sbjct: 205 IINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITE--TNPDNVILSPHVAGGMSG 262

Query: 327 WTREGMATLAALNVLGKIKGYP 348
              +    LA  N+    +G P
Sbjct: 263 EIMQPAVALAFENIKNFFEGKP 284

Length = 303

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 41/241 (17%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI------VEADEFMRAG 148
           +G +++D+ AA   G+ V    G    + AE      L   R        V + E+  AG
Sbjct: 130 IGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG 189

Query: 149 L----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRL 203
           +    YD           L+G+TVG +GAGRIG    + + + F  NL+Y+D L     L
Sbjct: 190 IAYRAYD-----------LEGKTVGTVGAGRIGRLLLQRL-KPFNCNLLYHDRLKMDPEL 237

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK   A               K    +D +L + DV+ ++  L + T  + NKER+A MK
Sbjct: 238 EKETGA---------------KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMK 282

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHI 321
           K  ++VN +RG ++D  A+ +      +   G DV+  +P  K  P    M N  + PHI
Sbjct: 283 KGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY-MPNHAMTPHI 341

Query: 322 A 322
           +
Sbjct: 342 S 342

Length = 386

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 37/215 (17%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           L +  AE   +  L   R +       R G+   W P          + VGV+G G +G+
Sbjct: 91  LAQGMAEYVLAAVLRLHRDMDRYAAQQRRGV---WKPLPQR--PAAERRVGVLGLGELGA 145

Query: 179 AYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237
           A AR +   GF                  V+ + +  K + E    +     +D  L + 
Sbjct: 146 AVARRLAALGFP-----------------VSGWSRSPK-DIEGVTCFHGEEGLDAFLAQT 187

Query: 238 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           D+ + L P+  +T   ++N E LA + + A L+N  RGP + E  L+  L    +    L
Sbjct: 188 DILVCLLPLTPETR-GILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVL 246

Query: 297 DVFEDEPYMKPGLSE------MKNAIVVPHIASAS 325
           DVFE EP     L             V PHIA+ +
Sbjct: 247 DVFEQEP-----LPADHPLWRHPRVTVTPHIAAIT 276

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 75.7 bits (186), Expect = 4e-15
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L  +TVG++G G +G      + E   +  +  D  +A R ++     G F      
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARL-EALGIKTLLCDPPRADRGDE-----GDF------ 158

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    S+DE+++EAD+++ H  L K     T HL +++ + ++K  AIL+N  RG 
Sbjct: 159 --------RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA 210

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 333
           V+D  AL+  L +     V LDV+E EP +   L + K  I  PHIA    +T EG A
Sbjct: 211 VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLK-KVDIGTPHIAG---YTLEGKA 264

Length = 378

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 66/213 (30%), Positives = 89/213 (41%), Gaps = 35/213 (16%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWL-------PNLFVGNLLKGQTVGVIGAG 174
           T AE   +L LAA RR+ E  E  R   + G L       P   +  LL G  V + G G
Sbjct: 94  TVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLL-GARVLIWGFG 152

Query: 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMD 231
            IG   A ++                T L   VT   +   + GE+   PV       + 
Sbjct: 153 SIGQRLAPLL----------------TALGARVTGVAR---SAGERAGFPVV--AEDELP 191

Query: 232 EVLREADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290
           E+L E DV + + P    T  H ++ E LA + K A +VN  RG  +DE ALV  L+   
Sbjct: 192 ELLPETDVLVMILPATPSTA-HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGR 250

Query: 291 MFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIA 322
           +    LDV   EP      L +  N I+ PH A
Sbjct: 251 LGGAALDVTATEPLPASSPLWDAPNLILTPHAA 283

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169
           + +    G+     AE      L  +   ++  E  +   +        V + + G+ VG
Sbjct: 79  VPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSV-GKRVG 137

Query: 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK------FVTAYGQFLKANGEQPVT 223
           ++G G IG   AR+      M +  Y        E        V   G     +G  P  
Sbjct: 138 ILGYGSIGRQTARLAQ-ALGMEVYAYTRSPRPTPESRKDDGYIVPGTGD---PDGSIPSA 193

Query: 224 W---KRASSMDEVLREA-D--VISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPV 276
           W      +S+ E LR+  D  V+SL P+   T  HL+  E    + K++  + N +RG +
Sbjct: 194 WFSGTDKASLHEFLRQDLDLLVVSL-PLTPATK-HLLGAEEFEILAKRKTFVSNIARGSL 251

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 326
           +D  ALV  L+   +    LDV + EP +     L    N I+ PH++  ++
Sbjct: 252 VDTDALVAALESGQIRGAALDVTDPEP-LPADHPLWSAPNVIITPHVSWQTQ 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 45/246 (18%)

Query: 117 GVLTETTAELAASLSLAAARRI----VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
           GV  E  AE   +  LAAA+R+    V+  E         W         L G T+G++G
Sbjct: 93  GVAAEAIAEFVLAAILAAAKRLPEIWVKGAEQ--------WRRE--PLGSLAGSTLGIVG 142

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG A AR  +    M ++      A R        G+     G +      A+ + E
Sbjct: 143 FGAIGQALARRAL-ALGMRVL------ALRRS------GRPSDVPGVE-----AAADLAE 184

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           +   +D + L   L   T HLIN + LA  K    L+N +RG ++D+ AL+E L    + 
Sbjct: 185 LFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRIS 244

Query: 293 RVGLDVFEDEP-------YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK 345
              LDV + EP       Y  P +       + PH ++ +   R  +A     N+     
Sbjct: 245 LASLDVTDPEPLPEGHPLYTHPRVR------LSPHTSAIAPDGRRNLADRFLENLARYRA 298

Query: 346 GYPIWG 351
           G P+  
Sbjct: 299 GQPLHD 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 66.5 bits (162), Expect = 3e-12
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAAN-KYGIAVGNTPGVLTETT---AELAASLSLAAA 135
           A + + G +      +G ++ D+  A  + G+      GV        +  A  LS+   
Sbjct: 81  ALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFI 140

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
            R +E  +  R G              + G+TV V+GAG +G   A+M+  G    ++  
Sbjct: 141 ARFLEVQQPGRLGGAPD----------VAGKTVVVVGAGVVGKEAAQMLR-GLGAQVLIT 189

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLI 254
           D+      +               + +  K    ++E L EADVI     +  K    L+
Sbjct: 190 DINVEALEQ--------------LEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILV 235

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +E +  MK  +++VN + G V    AL   L
Sbjct: 236 PEELVEQMKPGSVIVNVAVGAVGCVQALHTQL 267

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 61/257 (23%), Positives = 84/257 (32%), Gaps = 56/257 (21%)

Query: 99  NVDVNAANKYGIAVGNT-----PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           NVD+ AA + GI V         GV+    +EL         R +              W
Sbjct: 85  NVDIAAARENGITVTGIRDYGDEGVVEYVISELI--------RLLHGFGGKQ-------W 129

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                    L G  VG+IG G  G   A  +   F  ++ YY   +    E     Y   
Sbjct: 130 KE---EPRELTGLKVGIIGLGTTGQMIADAL-SFFGADVYYYSRTRKPDAEAKGIRY--- 182

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
                  P        ++E+L+  DVI     L K    L+ +E    +    IL N S 
Sbjct: 183 ------LP--------LNELLKTVDVICTC--LPKNVI-LLGEEEFELLGDGKILFNTSL 225

Query: 274 GPVIDEVALVEHL---KQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
           GP  +  AL + L     N           DE      L    N I     A    WTR+
Sbjct: 226 GPSFEVEALKKWLKASGYNIFDCDTAGALGDEE-----LLRYPNVICTNKSAG---WTRQ 277

Query: 331 GMATLAALNVLGKIKGY 347
               L+   VL  ++ Y
Sbjct: 278 AFERLSQ-KVLANLEEY 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT 223
               V +IGAG +G   A++       N++ YD+ +            + ++  G   + 
Sbjct: 161 PPAKVLIIGAGVVGLGAAKIAK-KLGANVLVYDIKEEKL---------KGVETLGGSRLR 210

Query: 224 WKRASSMDEVLREADVI---SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
           + +   +++ L++ D++    L          LI +E +  MK+ A++V+ +
Sbjct: 211 YSQKEELEKELKQTDILINAILVD--GPRAPILIMEELVGPMKRGAVIVDLA 260

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
PLN02306	386	hydroxypyruvate reductase	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.98
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.86
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.85
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.83
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.66
PLN02494	477	adenosylhomocysteinase	99.61
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.61
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.48
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.47
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.39
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.36
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.31
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.27
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.26
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.24
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.2
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.2
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.1
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.07
PLN02712	667	arogenate dehydrogenase	99.05
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.04
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.01
PLN02256	304	arogenate dehydrogenase	98.98
PLN02858	1378	fructose-bisphosphate aldolase	98.95
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.95
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.93
PLN02858	1378	fructose-bisphosphate aldolase	98.92
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.91
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.86
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.86
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.85
PRK08655	437	prephenate dehydrogenase; Provisional	98.85
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.84
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.82
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.81
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.81
PRK07417	279	arogenate dehydrogenase; Reviewed	98.8
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.76
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.74
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.74
PRK06545	359	prephenate dehydrogenase; Validated	98.72
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.72
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.72
PRK05225	487	ketol-acid reductoisomerase; Validated	98.7
PLN02712	667	arogenate dehydrogenase	98.7
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.68
PRK08818	370	prephenate dehydrogenase; Provisional	98.67
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.67
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.67
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.66
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.66
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.66
PLN02688	266	pyrroline-5-carboxylate reductase	98.62
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.61
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.58
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.58
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.55
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.55
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.54
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.54
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.52
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.52
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.5
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.49
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.48
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.47
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.46
PRK08507	275	prephenate dehydrogenase; Validated	98.45
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.44
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.42
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.42
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.39
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.39
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.39
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.36
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.35
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.35
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.35
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.34
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.34
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.31
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.31
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.3
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.3
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.3
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.3
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.27
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.26
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.25
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.18
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.17
PRK07680	273	late competence protein ComER; Validated	98.16
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.16
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.15
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.13
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.09
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.09
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.04
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.04
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.01
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PLN00203	519	glutamyl-tRNA reductase	97.98
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.96
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.95
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.95
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.95
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.94
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.91
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.89
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.88
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.87
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.86
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.85
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.84
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.84
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.83
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.82
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.82
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.81
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.8
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.79
PRK06141	314	ornithine cyclodeaminase; Validated	97.79
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.79
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.78
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.77
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.77
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.76
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.76
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.74
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.73
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.73
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.73
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.68
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.67
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.65
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.63
PRK07340	304	ornithine cyclodeaminase; Validated	97.62
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.61
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.59
PRK14982	340	acyl-ACP reductase; Provisional	97.53
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.52
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.51
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.51
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.5
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.48
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.48
PRK08618	325	ornithine cyclodeaminase; Validated	97.42
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.41
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.41
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.4
PRK06823	315	ornithine cyclodeaminase; Validated	97.39
PRK06046	326	alanine dehydrogenase; Validated	97.39
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.38
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.37
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.35
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.34
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.33
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.33
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.31
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.3
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.28
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.27
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.25
PTZ00117	319	malate dehydrogenase; Provisional	97.22
PRK07589	346	ornithine cyclodeaminase; Validated	97.2
PRK06407	301	ornithine cyclodeaminase; Provisional	97.19
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.19
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.18
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.18
PRK08291	330	ectoine utilization protein EutC; Validated	97.17
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.15
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.11
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.1
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.09
PRK06199	379	ornithine cyclodeaminase; Validated	97.09
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.08
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.08
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.07
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.05
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.03
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.03
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.01
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.97
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.97
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	96.92
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	96.83
PRK09414	445	glutamate dehydrogenase; Provisional	96.74
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.73
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.72
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.68
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.68
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.65
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.62
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.6
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.6
PLN02477	410	glutamate dehydrogenase	96.58
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.54
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.52
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.51
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.5
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.5
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.49
PRK06223	307	malate dehydrogenase; Reviewed	96.47
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.46
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.43
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.42
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.41
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.4
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.37
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.36
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.36
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.3
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.23
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.22
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.21
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.19
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.19
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.15
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.14
PRK11579	346	putative oxidoreductase; Provisional	96.12
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.09
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.08
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.07
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.06
COG5322	351	Predicted dehydrogenase [General function predicti	96.05
PRK14031	444	glutamate dehydrogenase; Provisional	96.04
PRK06444	197	prephenate dehydrogenase; Provisional	96.03
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.02
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.01
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.0
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.98
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.95
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.95
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.9
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.83
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.83
PRK14030	445	glutamate dehydrogenase; Provisional	95.82
PRK02102	331	ornithine carbamoyltransferase; Validated	95.79
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.72
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.66
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.65
PRK00779	304	ornithine carbamoyltransferase; Provisional	95.61
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.6
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.56
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	95.53
PRK10637	457	cysG siroheme synthase; Provisional	95.51
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	95.5
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.49
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	95.49
PRK04284	332	ornithine carbamoyltransferase; Provisional	95.48
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.45
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.43
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	95.38
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.36
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.35
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.35
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.35
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.32
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.32
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.25
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.24
PRK12862	763	malic enzyme; Reviewed	95.22
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.21
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.2
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.16
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.1
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.08
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.05
PRK09496	453	trkA potassium transporter peripheral membrane com	95.04
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.03
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.99
PLN02342	348	ornithine carbamoyltransferase	94.99
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.96
PLN02602	350	lactate dehydrogenase	94.96
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.95
PRK09496	453	trkA potassium transporter peripheral membrane com	94.95
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.87
PRK10669	558	putative cation:proton antiport protein; Provision	94.86
PRK06270	341	homoserine dehydrogenase; Provisional	94.84
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.82
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	94.82
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	94.78
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.68
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.68
PRK08328	231	hypothetical protein; Provisional	94.67
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.63
PRK15076	431	alpha-galactosidase; Provisional	94.62
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	94.6
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.58
PRK12861	764	malic enzyme; Reviewed	94.56
PRK02255	338	putrescine carbamoyltransferase; Provisional	94.56
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.5
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.49
PRK06153	393	hypothetical protein; Provisional	94.48
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.48
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.47
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.43
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.39
PRK05086	312	malate dehydrogenase; Provisional	94.37
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.29
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.25
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.2
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.14
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.1
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.08
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.06
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.01
PRK07806	248	short chain dehydrogenase; Provisional	94.0
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	93.93
PLN02948	577	phosphoribosylaminoimidazole carboxylase	93.92
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.91
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	93.83
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	93.78
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	93.71
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.68
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	93.67
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	93.63
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.49
PRK14804	311	ornithine carbamoyltransferase; Provisional	93.47
COG0673	342	MviM Predicted dehydrogenases and related proteins	93.46
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	93.46
PRK12937	245	short chain dehydrogenase; Provisional	93.46
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.45
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.45
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	93.38
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.35
PLN02527	306	aspartate carbamoyltransferase	93.27
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	93.21
PRK08223	287	hypothetical protein; Validated	93.2
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.2
PLN02214	342	cinnamoyl-CoA reductase	93.2
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	93.18
PRK04148	134	hypothetical protein; Provisional	93.13
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	93.04
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	92.98
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.96
PRK06701	290	short chain dehydrogenase; Provisional	92.89
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	92.89
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	92.89
PRK11891	429	aspartate carbamoyltransferase; Provisional	92.73
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.68
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	92.64
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	92.55
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	92.53
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	92.52
PRK06128	300	oxidoreductase; Provisional	92.45
PRK06349	426	homoserine dehydrogenase; Provisional	92.44
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.34
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	92.32
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	92.31
COG2344	211	AT-rich DNA-binding protein [General function pred	92.27
PRK07877	722	hypothetical protein; Provisional	92.22
PLN03209	576	translocon at the inner envelope of chloroplast su	92.08
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	92.01
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.97
PRK10206	344	putative oxidoreductase; Provisional	91.95
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.95
PTZ00325	321	malate dehydrogenase; Provisional	91.89
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	91.89
PRK08192	338	aspartate carbamoyltransferase; Provisional	91.85
PLN00106	323	malate dehydrogenase	91.83
PRK06392	326	homoserine dehydrogenase; Provisional	91.8
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.74
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.73
PRK12742	237	oxidoreductase; Provisional	91.63
PRK07411	390	hypothetical protein; Validated	91.62
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	91.58
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	91.51
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	91.49
PLN00112	444	malate dehydrogenase (NADP); Provisional	91.48
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.48
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	91.37
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	91.35
PLN02586	360	probable cinnamyl alcohol dehydrogenase	91.27
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	91.18
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	91.16
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.11
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	91.05
PRK10537	393	voltage-gated potassium channel; Provisional	91.04
PRK05442	326	malate dehydrogenase; Provisional	90.98
CHL00194	317	ycf39 Ycf39; Provisional	90.95
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	90.81
PRK08324	681	short chain dehydrogenase; Validated	90.7
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	90.61
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	90.61
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	90.59
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	90.5
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	90.5
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	90.45
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	90.29
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	90.25
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	90.12
PRK09189	240	uroporphyrinogen-III synthase; Validated	90.1
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.09
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	90.06
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	90.04
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	90.03
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.01
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	89.98
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	89.98
PRK06172	253	short chain dehydrogenase; Provisional	89.95
PRK07523	255	gluconate 5-dehydrogenase; Provisional	89.93
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	89.8
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	89.74
PRK12747	252	short chain dehydrogenase; Provisional	89.74
PRK06114	254	short chain dehydrogenase; Provisional	89.73
COG5495	289	Uncharacterized conserved protein [Function unknow	89.59
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	89.57
PRK06182	273	short chain dehydrogenase; Validated	89.55
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	89.49
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	89.49
PRK13529	563	malate dehydrogenase; Provisional	89.46
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	89.35
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	89.32
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	89.32
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	89.28
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	89.25
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	89.23
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	89.2
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.16
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.08
PRK07326	237	short chain dehydrogenase; Provisional	89.01
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	89.01
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.0
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	88.95
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.87
PRK08265	261	short chain dehydrogenase; Provisional	88.83
PRK14851	679	hypothetical protein; Provisional	88.82
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	88.59
PRK07904	253	short chain dehydrogenase; Provisional	88.54
PRK07825	273	short chain dehydrogenase; Provisional	88.53
PRK05717	255	oxidoreductase; Validated	88.49
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	88.49
PRK12828	239	short chain dehydrogenase; Provisional	88.47
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	88.43
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	88.42
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	88.29
PLN03075	296	nicotianamine synthase; Provisional	88.27
PLN02427	386	UDP-apiose/xylose synthase	88.26
PRK06197	306	short chain dehydrogenase; Provisional	88.09
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	88.06
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	87.98
PRK06841	255	short chain dehydrogenase; Provisional	87.98
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	87.98
PRK08628	258	short chain dehydrogenase; Provisional	87.97
PRK12935	247	acetoacetyl-CoA reductase; Provisional	87.96
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	87.95
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	87.9
PRK06196	315	oxidoreductase; Provisional	87.9
PRK08862	227	short chain dehydrogenase; Provisional	87.86
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	87.78
PRK07062	265	short chain dehydrogenase; Provisional	87.76
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	87.75
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	87.69
PRK09242	257	tropinone reductase; Provisional	87.65
PLN02383	344	aspartate semialdehyde dehydrogenase	87.63
PRK07239	381	bifunctional uroporphyrinogen-III synthetase/respo	87.6
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	87.52
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	87.51
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	87.46
PLN02206	442	UDP-glucuronate decarboxylase	87.41
PLN02740	381	Alcohol dehydrogenase-like	87.38
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	87.37
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	87.32

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.2e-78  Score=610.71  Aligned_cols=381  Identities=93%  Similarity=1.424  Sum_probs=329.6

Q ss_pred             CCCcceeEeeCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHH
Q 015895            1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA   80 (398)
Q Consensus         1 ~~~~~~~~~~~~~~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~   80 (398)
                      |.+++++.+.+|+.++||+++.+++++...+.|++.+++++.....+..++++++.+.+.+++|+++++..+++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~   80 (386)
T PLN02306          1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS   80 (386)
T ss_pred             CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence            89999999999999999999999886435788877666776443223346889998887545999999888899999999


Q ss_pred             HhhccCCceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccc
Q 015895           81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (398)
Q Consensus        81 ~~~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g  160 (398)
                      +++++++|+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|..|.+....|
T Consensus        81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g  160 (386)
T PLN02306         81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG  160 (386)
T ss_pred             hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence            99987679999999999999999999999999999999999999999999999999999999999999998887654568


Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+|+||||||||+|+||+.+|++++++|||+|++|||+.....+.+...++..+...+.....+....+++|++++||+|
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI  240 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence            89999999999999999999999634999999999998754322111111111111111111122235899999999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPH  320 (398)
                      ++|+|+|++|++|||++.|++||+|++|||+|||++|||+||++||++|+++||+||||++||++++|||++|||++|||
T Consensus       241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH  320 (386)
T PLN02306        241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH  320 (386)
T ss_pred             EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence            99999999999999999999999999999999999999999999999999999999999999988788999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhh
Q 015895          321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGK  381 (398)
Q Consensus       321 ia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (398)
                      +|+.|.++++++...+++|+.+|++|+++.|.||.++|++.++..++..+|+|.+++.||.
T Consensus       321 iag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (386)
T PLN02306        321 IASASKWTREGMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALGL  381 (386)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhCC
Confidence            9999999999999999999999999999999997344787777788899999999999985

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=6.3e-78  Score=575.31  Aligned_cols=345  Identities=32%  Similarity=0.467  Sum_probs=315.5

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeecc
Q 015895           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (398)
Q Consensus        17 kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G   96 (398)
                      +||+++++.+. .++.|++.+.++++...    ++.||+...+.+ +|++|+|+.|++++++|+.... ++|+|+++|+|
T Consensus         8 ~il~~e~~~~~-~~~~l~~~g~~v~~~~~----~~~eel~~~i~~-~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G   80 (406)
T KOG0068|consen    8 KILVAESLDQA-CIEILKDNGYQVEFKKN----LSLEELIEKIKD-CDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG   80 (406)
T ss_pred             eEEEecccchH-HHHHHHhcCceEEEecc----CCHHHHHHHhcc-CCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence            59999999885 79999999988876542    678899999985 9999999999999999995433 45999999999


Q ss_pred             ccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh
Q 015895           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (398)
Q Consensus        97 ~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I  176 (398)
                      +||||+++|+++||.|.|+|.+|+.++||++++++++++|+++++..++|+|+   |.+..+.|.||+|||+||+|+|+|
T Consensus        81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~---wnr~~~~G~el~GKTLgvlG~GrI  157 (406)
T KOG0068|consen   81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGK---WNRVKYLGWELRGKTLGVLGLGRI  157 (406)
T ss_pred             ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCc---eeecceeeeEEeccEEEEeecccc
Confidence            99999999999999999999999999999999999999999999999999998   788999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (398)
Q Consensus       177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~  256 (398)
                      |+++|+++ +++||+|++|||..+.....          ..|     ++ ..+++|++..||||++|+|+||+|++|+|+
T Consensus       158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~g-----vq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~  220 (406)
T KOG0068|consen  158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFG-----VQ-LVSLEEILPKADFITLHVPLTPSTEKLLND  220 (406)
T ss_pred             hHHHHHHH-HhcCceEEeecCCCchHHHH----------hcc-----ce-eeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence            99999996 89999999999998764221          112     22 358999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC---CCCCCCCCceEEcCCCCCCcHHHHHHHH
Q 015895          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTREGMA  333 (398)
Q Consensus       257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~---~~~L~~~~nvilTPHia~~T~ea~~~~~  333 (398)
                      +.|++||+|+++||+|||++||++||++||++|+++|||+|||+.||+.   ++.|.+||||++|||+|++|.|+|.+++
T Consensus       221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~ia  300 (406)
T KOG0068|consen  221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIA  300 (406)
T ss_pred             HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986   4689999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCccee
Q 015895          334 TLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCL  392 (398)
Q Consensus       334 ~~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (398)
                      ..+++++.+|.+| ...++|| . |-+. .+..++.+||+.++|++|++..|-++++--
T Consensus       301 ievaea~~~~~~~-~~~g~Vn-a-~~v~-~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~  355 (406)
T KOG0068|consen  301 IEVAEAVSDYING-NSAGSVN-A-PEVA-LESLTELKPNIVLAEKLGRLVPGVLKGVNG  355 (406)
T ss_pred             HHHHHHHHHHhcc-Cccceec-h-hhhh-hhhhhccCchhHHHHHHhhhhHHHhcCCcc
Confidence            9999999999999 7778995 4 7776 568999999999999999999998887643

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-74  Score=568.05  Aligned_cols=312  Identities=37%  Similarity=0.513  Sum_probs=279.0

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEE
Q 015895           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (398)
Q Consensus        13 ~~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~   92 (398)
                      ++++++++++++.+. +.+.+... .++++...  ...+++++.+.+.+ +|++++ +.+++++++++.+++|  |+|++
T Consensus         1 ~~~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~--~~~~~~~l~~~~~~-~d~~~~-~~~~v~~~~l~~~~~L--k~I~~   72 (324)
T COG0111           1 KMMIKVLVTDPLAPD-ALEELLAA-YDVEVPDG--PDLDEEELLEALAD-ADALIV-SVTPVTEEVLAAAPNL--KAIGR   72 (324)
T ss_pred             CCcceeeccCccCHH-HHHHHHhc-cccccccc--cccchHHHHhhccc-CcEEEE-ecCCCCHHHHhhCCCc--eEEEE
Confidence            367889999999986 55666554 33333322  23567778888875 999999 8899999999999988  99999


Q ss_pred             eeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 015895           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (398)
Q Consensus        93 ~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (398)
                      .|+|+||||+++++++||.|+|+|++|+.+||||+++++|+++|+++.+++++++|.   |.+..+.|.+|+||||||||
T Consensus        73 ~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~---W~~~~~~g~el~gkTvGIiG  149 (324)
T COG0111          73 AGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGE---WDRKAFRGTELAGKTVGIIG  149 (324)
T ss_pred             ccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCC---ccccccccccccCCEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999998   54466778899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      +|+||+.+|+++ ++|||+|++|||+.+...+.               ..+.....+|++++++||||++|+|+|++|+|
T Consensus       150 ~G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g  213 (324)
T COG0111         150 LGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRG  213 (324)
T ss_pred             CCHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence            999999999997 89999999999976553221               11233457899999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCCcHHHHHH
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      |||++.|++||+|++|||||||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+|++|.|++++
T Consensus       214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~  293 (324)
T COG0111         214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER  293 (324)
T ss_pred             ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999876 6999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 015895          332 MATLAALNVLGKIKGYPIWG  351 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~  351 (398)
                      ++.++++|+.+|++|+++.|
T Consensus       294 ~~~~~~~~i~~~l~g~~~~~  313 (324)
T COG0111         294 VAEIVAENIVRYLAGGPVVN  313 (324)
T ss_pred             HHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999776

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=4.2e-73  Score=593.28  Aligned_cols=344  Identities=34%  Similarity=0.493  Sum_probs=308.7

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeecc
Q 015895           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (398)
Q Consensus        17 kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G   96 (398)
                      |||+++++++. ..+.|++.++++...  +  ..+++++.+.+.+ +|++++++.+++++++++++|+|  |+|+++|+|
T Consensus         1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G   72 (525)
T TIGR01327         1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIPD-YDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG   72 (525)
T ss_pred             CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence            47889988764 678887766666542  2  2478888888875 99999998889999999999988  999999999


Q ss_pred             ccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh
Q 015895           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (398)
Q Consensus        97 ~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I  176 (398)
                      +||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|   .+..+.|.+|+||||||||+|+|
T Consensus        73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W---~~~~~~g~~l~gktvgIiG~G~I  149 (525)
T TIGR01327        73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEW---DRKAFMGTELYGKTLGVIGLGRI  149 (525)
T ss_pred             cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCc---cccccCccccCCCEEEEECCCHH
Confidence            999999999999999999999999999999999999999999999999999985   44445788999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (398)
Q Consensus       177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~  256 (398)
                      |+.+|+++ ++|||+|++|||+.......          .     .++....+++|++++||+|++|+|+|++|+++||+
T Consensus       150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~  213 (525)
T TIGR01327       150 GSIVAKRA-KAFGMKVLAYDPYISPERAE----------Q-----LGVELVDDLDELLARADFITVHTPLTPETRGLIGA  213 (525)
T ss_pred             HHHHHHHH-HhCCCEEEEECCCCChhHHH----------h-----cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence            99999997 79999999999975432111          0     12222358999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHHH
Q 015895          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLA  336 (398)
Q Consensus       257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~  336 (398)
                      +.|++||+|++|||+|||++||++||++||++|+++||+||||++||++++|||++|||++|||+|++|.+++++++..+
T Consensus       214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~  293 (525)
T TIGR01327       214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQV  293 (525)
T ss_pred             HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888899999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcc
Q 015895          337 ALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTV  390 (398)
Q Consensus       337 ~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (398)
                      ++|+.+|++|+++.|.|| . |.++ .+.++.++||+.||++||+++.|=.|+-
T Consensus       294 ~~ni~~~~~g~~~~~~vn-~-~~~~-~~~~~~~~~~~~la~riG~~a~ql~~~~  344 (525)
T TIGR01327       294 AEQVLDALKGLPVPNAVN-A-PGID-ADVMEKLKPYLDLAEKLGKLAGQLLDGA  344 (525)
T ss_pred             HHHHHHHHcCCCCCceee-C-CCCC-chhhhhhhhHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999995 4 8887 5588899999999999999999987763

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=7e-72  Score=551.27  Aligned_cols=317  Identities=33%  Similarity=0.495  Sum_probs=277.9

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      +++|||++++++++ ..+.|++. +++.... .....+.+++.+.+.+ +|+++++. .++++++++++|+|  |+|++.
T Consensus         1 ~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~~-ad~li~~~-~~~~~~~l~~~p~L--k~I~~~   73 (323)
T PRK15409          1 MKPSVILYKALPDD-LLQRLEEH-FTVTQVA-NLSPETVEQHAAAFAE-AEGLLGSG-EKVDAALLEKMPKL--RAASTI   73 (323)
T ss_pred             CCceEEEeCCCCHH-HHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhcC-CeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence            46789999998764 67778764 4554332 1123467788888875 99999864 48999999999998  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+||||+++|+++||.|+|+|++++++||||++++||+++|+++++++.+++|+|..|......|.+|+|||+||||+
T Consensus        74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~  153 (323)
T PRK15409         74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM  153 (323)
T ss_pred             ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999754332234578999999999999


Q ss_pred             ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       174 G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      |+||+.+|+++ + +|||+|++|||+.......          .     .+. ...+++|++++||+|++|+|+|++|++
T Consensus       154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~----------~-----~~~-~~~~l~ell~~sDvv~lh~plt~~T~~  216 (323)
T PRK15409        154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE----------R-----FNA-RYCDLDTLLQESDFVCIILPLTDETHH  216 (323)
T ss_pred             cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH----------h-----cCc-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence            99999999997 7 9999999999985432110          0     111 235899999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      +||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++ ++|||++|||++|||+|+.|.+++.+
T Consensus       217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~  296 (323)
T PRK15409        217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN  296 (323)
T ss_pred             ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999985 57999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 015895          332 MATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      +...+++|+.+|++|+++.+.||
T Consensus       297 ~~~~~~~ni~~~~~g~~~~~~vn  319 (323)
T PRK15409        297 MAACAVDNLIDALQGKVEKNCVN  319 (323)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccC
Confidence            99999999999999999999885

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-72  Score=585.85  Aligned_cols=344  Identities=33%  Similarity=0.486  Sum_probs=307.8

Q ss_pred             eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEee
Q 015895           16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (398)
                      |||++++++++. ..+.|++. ++++...  +  ..+++++.+.+.+ +|++++++.+++++++++++|+|  |+|++.|
T Consensus         1 m~ili~~~~~~~-~~~~l~~~~~~~v~~~--~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (526)
T PRK13581          1 MKVLVSDPISPA-GLEILKDAPGVEVDVK--T--GLDKEELLEIIGD-YDALIVRSATKVTAEVLEAAKNL--KVIGRAG   72 (526)
T ss_pred             CeEEEeCCCCHH-HHHHHhccCCeEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence            478999988764 67788765 4454432  2  2467888888875 99999998889999999999988  9999999


Q ss_pred             ccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 015895           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (398)
Q Consensus        95 ~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG  174 (398)
                      +|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|.|.   +..+.|.+|+||||||||+|
T Consensus        73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~---~~~~~g~~l~gktvgIiG~G  149 (526)
T PRK13581         73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWE---RKKFMGVELYGKTLGIIGLG  149 (526)
T ss_pred             cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCC---ccCccccccCCCEEEEECCC
Confidence            999999999999999999999999999999999999999999999999999999854   33456889999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhc
Q 015895          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (398)
Q Consensus       175 ~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li  254 (398)
                      +||+.+|+++ ++|||+|++|||+.......          .     .++.. .+++|++++||+|++|+|+|++|+++|
T Consensus       150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~-----~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li  212 (526)
T PRK13581        150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA----------Q-----LGVEL-VSLDELLARADFITLHTPLTPETRGLI  212 (526)
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHHH----------h-----cCCEE-EcHHHHHhhCCEEEEccCCChHhhcCc
Confidence            9999999997 79999999999975432110          0     11223 389999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHH
Q 015895          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT  334 (398)
Q Consensus       255 ~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~~  334 (398)
                      +++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++++|||++|||++|||+|++|.+++++++.
T Consensus       213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~  292 (526)
T PRK13581        213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAI  292 (526)
T ss_pred             CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcc
Q 015895          335 LAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTV  390 (398)
Q Consensus       335 ~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (398)
                      .+++|+.+|++|+++.|.|| + |.++ .+.++.++||+.+|++||+++.|=.|+-
T Consensus       293 ~~~~ni~~~~~g~~~~~~vn-~-~~~~-~~~~~~~~~~~~la~riG~~a~ql~~~~  345 (526)
T PRK13581        293 QVAEQVIDALRGGPVPNAVN-L-PSIT-AEEAEKLKPYLDLAEKLGSLAAQLADGP  345 (526)
T ss_pred             HHHHHHHHHHcCCCcCceee-C-CCCc-hhhhHHhHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999995 5 8887 5689999999999999999999987764

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=4.8e-71  Score=543.61  Aligned_cols=317  Identities=39%  Similarity=0.536  Sum_probs=278.4

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      +|++++++.++++. ..+.+.+. +++......... .. ++.+... ++|++++...+++++++++++|+|  |+|+..
T Consensus         1 mk~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~-~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~   73 (324)
T COG1052           1 MKIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTP-DT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATR   73 (324)
T ss_pred             CCcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCcc-ch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEe
Confidence            35668888888875 56777665 666655433111 22 5556555 499999998889999999999987  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCC-CCCcccccccCCCeEEEEe
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIG  172 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w-~~~~~~g~~l~gktvGIIG  172 (398)
                      |+||||||+++|+++||.|+|+|++++++||||++++||++.|++.++++++|+|+|..| ......|.+++|||+||||
T Consensus        74 ~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG  153 (324)
T COG1052          74 SAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG  153 (324)
T ss_pred             ccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999998765 2344678899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      +|+||+++|+++ ++|||+|++|||++.+..+..               .++. +.+++|++++||+|++|||+|++|+|
T Consensus       154 ~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~~-y~~l~ell~~sDii~l~~Plt~~T~h  216 (324)
T COG1052         154 LGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGAR-YVDLDELLAESDIISLHCPLTPETRH  216 (324)
T ss_pred             CCHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCce-eccHHHHHHhCCEEEEeCCCChHHhh
Confidence            999999999997 799999999999986432220               1122 34599999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCc---eEEcCCCCCCcHHH
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKWT  328 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~n---vilTPHia~~T~ea  328 (398)
                      |||++.|++||+|++|||+|||++|||+||++||++|+|+|||||||+.||.+ ++||++++|   |++|||+|+.|.|+
T Consensus       217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea  296 (324)
T COG1052         217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEA  296 (324)
T ss_pred             hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHH
Confidence            99999999999999999999999999999999999999999999999999985 678888777   99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          329 REGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       329 ~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      +.+|+..+++|+.+|++|+...+.||
T Consensus       297 ~~~m~~~~~~nl~~~~~g~~~~~~v~  322 (324)
T COG1052         297 RKAMAELALENLEAFFDGGVPPNEVN  322 (324)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999988884

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-70  Score=557.91  Aligned_cols=322  Identities=28%  Similarity=0.377  Sum_probs=286.1

Q ss_pred             eeCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCC
Q 015895            9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG   87 (398)
Q Consensus         9 ~~~~~~~~kvlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~   87 (398)
                      +..|.++|||++++++++. ..+.|++.++ ++....   ...+++++.+.+.+ +|++++++.+++++++++++|+|  
T Consensus         4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L--   76 (409)
T PRK11790          4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIKD-AHFIGIRSRTQLTEEVLAAAEKL--   76 (409)
T ss_pred             CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcCC-CCEEEEeCCCCCCHHHHhhCCCC--
Confidence            4567888999999988764 6788877666 665432   13577888887774 99998888889999999999988  


Q ss_pred             ceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (398)
Q Consensus        88 k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt  167 (398)
                      |+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.   +..+.|.+|.|||
T Consensus        77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~---~~~~~~~~L~gkt  153 (409)
T PRK11790         77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWN---KSAAGSFEVRGKT  153 (409)
T ss_pred             eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccc---ccccCcccCCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999854   3334678999999


Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt  247 (398)
                      |||||+|+||+.+|+++ ++|||+|++|||+.....              +    +.....+++|++++||+|++|+|+|
T Consensus       154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~--------------~----~~~~~~~l~ell~~sDiVslh~Plt  214 (409)
T PRK11790        154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL--------------G----NARQVGSLEELLAQSDVVSLHVPET  214 (409)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEECCCccccc--------------C----CceecCCHHHHHhhCCEEEEcCCCC
Confidence            99999999999999997 899999999998643210              0    1223458999999999999999999


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-----CCCCCCCceEEcCCCC
Q 015895          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIA  322 (398)
Q Consensus       248 ~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-----~~L~~~~nvilTPHia  322 (398)
                      ++|+++||++.|++||+|++|||+|||++||++||+++|++|+++||+||||++||++.     +|||++|||++|||+|
T Consensus       215 ~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia  294 (409)
T PRK11790        215 PSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG  294 (409)
T ss_pred             hHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence            99999999999999999999999999999999999999999999999999999999863     4899999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 015895          323 SASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLN  361 (398)
Q Consensus       323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~  361 (398)
                      ++|.+++++++..+++|+.+|++|+++.+.||.  |.+.
T Consensus       295 ~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~--~~~~  331 (409)
T PRK11790        295 GSTQEAQENIGLEVAGKLVKYSDNGSTLSAVNF--PEVS  331 (409)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCcCcceec--cccc
Confidence            999999999999999999999999999999964  6554

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=2.5e-69  Score=535.75  Aligned_cols=318  Identities=43%  Similarity=0.645  Sum_probs=280.1

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      |++||++++++++. ..+.|++. +++.... .+...+.+++.+.+.+ +|+++++..+++++++++++|+|  |+|++.
T Consensus         1 ~~~kil~~~~~~~~-~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~   74 (333)
T PRK13243          1 MKPKVFITREIPEN-GIEMLEEH-FEVEVWE-DEREIPREVLLEKVRD-VDALVTMLSERIDCEVFEAAPRL--RIVANY   74 (333)
T ss_pred             CCceEEEECCCCHH-HHHHHhcC-ceEEEec-CCCCCCHHHHHHHhCC-CcEEEEeCCCCCCHHHHhhCCCC--eEEEec
Confidence            46889999988754 66777764 4554432 2223467888887774 99999987778999999999988  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCC----CCCCcccccccCCCeEE
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVG  169 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~----w~~~~~~g~~l~gktvG  169 (398)
                      |+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|..    |....+.|.+|+|||||
T Consensus        75 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvg  154 (333)
T PRK13243         75 AVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIG  154 (333)
T ss_pred             CccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999753    22223467899999999


Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh
Q 015895          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (398)
Q Consensus       170 IIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~  249 (398)
                      |||+|+||+.+|+++ ++|||+|++|||+.......          .     .+. ...++++++++||+|++|+|+|++
T Consensus       155 IiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~-----~~~-~~~~l~ell~~aDiV~l~lP~t~~  217 (333)
T PRK13243        155 IIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK----------E-----LGA-EYRPLEELLRESDFVSLHVPLTKE  217 (333)
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH----------H-----cCC-EecCHHHHHhhCCEEEEeCCCChH
Confidence            999999999999997 79999999999986542110          0     111 135899999999999999999999


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHH
Q 015895          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR  329 (398)
Q Consensus       250 T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~  329 (398)
                      |+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+++
T Consensus       218 T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~  297 (333)
T PRK13243        218 TYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAR  297 (333)
T ss_pred             HhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          330 EGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       330 ~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      .++...+++|+.+|++|+++.|.||
T Consensus       298 ~~~~~~~~~ni~~~~~g~~~~~~v~  322 (333)
T PRK13243        298 EGMAELVAENLIAFKRGEVPPTLVN  322 (333)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccC
Confidence            9999999999999999999999885

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=9.5e-69  Score=527.02  Aligned_cols=302  Identities=28%  Similarity=0.422  Sum_probs=261.3

Q ss_pred             eEEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           16 YRVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        16 ~kvlv~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      |||++.++  +++. ..+.|++.+ ++....  .  .+++++.+.+.+ +|+++++ .+++++++++++|+|  |+|++.
T Consensus         1 mki~~~~~~~~~~~-~~~~l~~~~-~~~~~~--~--~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~   70 (311)
T PRK08410          1 MKIVILDAKTLGDK-DLSVFEEFG-DFQIYP--T--TSPEEVIERIKD-ANIIITN-KVVIDKEVLSQLPNL--KLICIT   70 (311)
T ss_pred             CeEEEEecCCCChh-hHHHHhhCc-eEEEeC--C--CCHHHHHHHhCC-CCEEEEC-CCCCCHHHHhhCCCC--eEEEEc
Confidence            35666655  4443 567777653 554332  1  356788888775 9999886 568999999999988  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCc---ccccccCCCeEEE
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGV  170 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~---~~g~~l~gktvGI  170 (398)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|..+....   ..+.+|+||||||
T Consensus        71 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGI  150 (311)
T PRK08410         71 ATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGI  150 (311)
T ss_pred             ccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999975332110   1257999999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhh
Q 015895          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (398)
Q Consensus       171 IGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T  250 (398)
                      ||+|+||+.+|+++ ++|||+|++|||+.....                  .++ ...+++|++++||+|++|+|+|++|
T Consensus       151 iG~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T  210 (311)
T PRK08410        151 IGLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKT  210 (311)
T ss_pred             ECCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchh
Confidence            99999999999997 899999999999753210                  012 2358999999999999999999999


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCC---CceEEcCCCCCCcH
Q 015895          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM---KNAIVVPHIASASK  326 (398)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~---~nvilTPHia~~T~  326 (398)
                      +++||++.|++||+|++|||+|||++|||+||++||++|+|+ |+||||++||++ ++|||++   |||++|||+|++|.
T Consensus       211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~  289 (311)
T PRK08410        211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASK  289 (311)
T ss_pred             hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCH
Confidence            999999999999999999999999999999999999999999 999999999986 4789986   89999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Q 015895          327 WTREGMATLAALNVLGKIKGYP  348 (398)
Q Consensus       327 ea~~~~~~~~~~ni~~~l~g~~  348 (398)
                      ++++++...+++|+.+|++|++
T Consensus       290 e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        290 EARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999863

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-68  Score=526.58  Aligned_cols=303  Identities=28%  Similarity=0.334  Sum_probs=262.0

Q ss_pred             EEEEeCC--CCc-hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           17 RVVSTKP--MPG-TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        17 kvlv~~~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      ||++.+.  ++. ....+.|++...++....    ..+++++.+.+.+ +|+++++ .+++++++++++|+|  |+|++.
T Consensus         2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~   73 (317)
T PRK06487          2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHD----ATTPEQVAERLRG-AQVAISN-KVALDAAALAAAPQL--KLILVA   73 (317)
T ss_pred             eEEEEccccCCccccchhHHHhhCCeEEEec----CCCHHHHHHHhCC-CeEEEEe-CCCCCHHHHhhCCCC--eEEEEc
Confidence            5666544  221 123456665444554432    1356888888875 9998876 467999999999988  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCC---cccccccCCCeEEE
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGV  170 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~---~~~g~~l~gktvGI  170 (398)
                      |+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|..|...   .+.+.+|+||||||
T Consensus        74 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgI  153 (317)
T PRK06487         74 ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGL  153 (317)
T ss_pred             CccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999997654321   22457899999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhh
Q 015895          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (398)
Q Consensus       171 IGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T  250 (398)
                      ||+|+||+.+|+++ ++|||+|++||++....               .     . ...+++|++++||+|++|+|+|++|
T Consensus       154 iG~G~IG~~vA~~l-~~fgm~V~~~~~~~~~~---------------~-----~-~~~~l~ell~~sDiv~l~lPlt~~T  211 (317)
T PRK06487        154 LGHGELGGAVARLA-EAFGMRVLIGQLPGRPA---------------R-----P-DRLPLDELLPQVDALTLHCPLTEHT  211 (317)
T ss_pred             ECCCHHHHHHHHHH-hhCCCEEEEECCCCCcc---------------c-----c-cccCHHHHHHhCCEEEECCCCChHH
Confidence            99999999999997 89999999999864321               0     1 1248999999999999999999999


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCC--CCceEEcCCCCCCcHH
Q 015895          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASKW  327 (398)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~--~~nvilTPHia~~T~e  327 (398)
                      +++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||.  +|||++|||+|++|.+
T Consensus       212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e  291 (317)
T PRK06487        212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSRE  291 (317)
T ss_pred             hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHH
Confidence            99999999999999999999999999999999999999999999999999999865 68995  8999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCC
Q 015895          328 TREGMATLAALNVLGKIKGYPI  349 (398)
Q Consensus       328 a~~~~~~~~~~ni~~~l~g~~~  349 (398)
                      ++++++..+++|+.+|++|+++
T Consensus       292 ~~~~~~~~~~~ni~~~~~g~~~  313 (317)
T PRK06487        292 ARQRIVGQLAENARAFFAGKPL  313 (317)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999875

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.6e-67  Score=516.30  Aligned_cols=274  Identities=30%  Similarity=0.384  Sum_probs=247.0

Q ss_pred             CCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHH
Q 015895           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (398)
Q Consensus        50 ~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~  129 (398)
                      .+++|+.+.+.+ +|++++. .+++++++++++|+|  |+|++.|+|+||||+++|+++||.|+|+||+++.+||||+++
T Consensus        33 ~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~  108 (314)
T PRK06932         33 TSAEQTIERAKD-ADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG  108 (314)
T ss_pred             CChHHHHHHhCC-CcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence            467888888875 9988774 567999999999988  999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchHHHHHHHHcCccCCCCC---CcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 015895          130 LSLAAARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (398)
Q Consensus       130 l~L~~~R~~~~~~~~~~~g~~~~w~~---~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~  206 (398)
                      +||+++|+++.+++.+++|+|..+..   ..+.+.+|+||||||||+|+||+.+|+++ ++|||+|++||++.....   
T Consensus       109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~~---  184 (314)
T PRK06932        109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASVC---  184 (314)
T ss_pred             HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCccccc---
Confidence            99999999999999999999754321   11245789999999999999999999997 899999999997642110   


Q ss_pred             HhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (398)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL  286 (398)
                                    .   ....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||
T Consensus       185 --------------~---~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL  247 (314)
T PRK06932        185 --------------R---EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL  247 (314)
T ss_pred             --------------c---cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence                          0   01358999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCccEEEeccCCCCCCC-CCCCC----CCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 015895          287 KQNPMFRVGLDVFEDEPYM-KPGLS----EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP  348 (398)
Q Consensus       287 ~~g~i~gAalDV~~~EP~~-~~~L~----~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g~~  348 (398)
                      ++|+|+||+||||++||++ ++|||    ++|||++|||+|++|.++++++...+++|+.+|++|++
T Consensus       248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999986 47898    58999999999999999999999999999999999864

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-65  Score=514.78  Aligned_cols=301  Identities=25%  Similarity=0.291  Sum_probs=266.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCceEEEeeccccccCchHhhhc
Q 015895           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY  108 (398)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~~  108 (398)
                      +.|++.++++.+...  ...+.+++.+.+.+ +|++|++.  .+++++++++++|+|  |+|++.|+|+||||+++|+++
T Consensus        62 ~~l~~~g~e~~~~~~--~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~~  136 (385)
T PRK07574         62 KFLEERGHELVVTSD--KDGPDSDFEKELPD-ADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASEH  136 (385)
T ss_pred             HHHHhcCcEEEEeCC--CCCCHHHHHHHcCC-CeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHHC
Confidence            567777888766432  23467888888875 99999864  467999999999998  999999999999999999999


Q ss_pred             CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 015895          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (398)
Q Consensus       109 gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f  188 (398)
                      ||.|+|+|++|+.+||||++++||+++|++..+++.+++|.|..+. ....+.+|+||||||||+|+||+.+|+++ ++|
T Consensus       137 gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~-~~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~f  214 (385)
T PRK07574        137 GITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIAD-CVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPF  214 (385)
T ss_pred             CcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc-ccccceecCCCEEEEECCCHHHHHHHHHH-HhC
Confidence            9999999999999999999999999999999999999999965321 11246799999999999999999999997 799


Q ss_pred             CcEEEEEcCChhhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcE
Q 015895          189 KMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI  267 (398)
Q Consensus       189 G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gai  267 (398)
                      ||+|++|||+..+. .+.          .     .+.....+++|++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus       215 G~~V~~~dr~~~~~~~~~----------~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~  279 (385)
T PRK07574        215 DVKLHYTDRHRLPEEVEQ----------E-----LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY  279 (385)
T ss_pred             CCEEEEECCCCCchhhHh----------h-----cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence            99999999986321 110          0     1122346899999999999999999999999999999999999999


Q ss_pred             EEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 015895          268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG  346 (398)
Q Consensus       268 lIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g  346 (398)
                      |||+|||+++|++||++||++|+|+||+||||++||++ ++|||++|||++|||+|+.|.+++++++..+++|+++|++|
T Consensus       280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G  359 (385)
T PRK07574        280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEG  359 (385)
T ss_pred             EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999986 47999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 015895          347 YPIWGNP  353 (398)
Q Consensus       347 ~~~~~~v  353 (398)
                      +++.|.-
T Consensus       360 ~~~~~~~  366 (385)
T PRK07574        360 RPIRDEY  366 (385)
T ss_pred             CCCCCCc
Confidence            9998765

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.9e-65  Score=513.91  Aligned_cols=300  Identities=23%  Similarity=0.249  Sum_probs=263.7

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCceEEEeeccccccCchHhhh
Q 015895           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK  107 (398)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~  107 (398)
                      .+.|++.++++.+....  ..+.+++.+.+.+ +|++|+..  .+++++++++++|+|  |+|++.|+|+||||+++|++
T Consensus        68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~  142 (386)
T PLN03139         68 RDWLESQGHQYIVTDDK--EGPDCELEKHIPD-LHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAA  142 (386)
T ss_pred             HHHHHhcCCeEEEeCCC--CCCHHHHHHHhCC-CeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHH
Confidence            45677778887665432  3567888888875 99999864  357999999999998  99999999999999999999


Q ss_pred             cCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 015895          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (398)
Q Consensus       108 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~  187 (398)
                      +||.|+|+||+|+.+||||++++||++.|++.++++.+++|.|.. ......+.+|.||||||||+|+||+.+|+++ ++
T Consensus       143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~-~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~a  220 (386)
T PLN03139        143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNV-AGIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KP  220 (386)
T ss_pred             CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCcc-ccccCCCcCCCCCEEEEEeecHHHHHHHHHH-HH
Confidence            999999999999999999999999999999999999999998642 1112356899999999999999999999998 79


Q ss_pred             CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcE
Q 015895          188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI  267 (398)
Q Consensus       188 fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gai  267 (398)
                      |||+|++||++..+....         ..     .+.....+++|++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus       221 fG~~V~~~d~~~~~~~~~---------~~-----~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~  286 (386)
T PLN03139        221 FNCNLLYHDRLKMDPELE---------KE-----TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVL  286 (386)
T ss_pred             CCCEEEEECCCCcchhhH---------hh-----cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence            999999999975321100         00     1122345899999999999999999999999999999999999999


Q ss_pred             EEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 015895          268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG  346 (398)
Q Consensus       268 lIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g  346 (398)
                      |||+|||++||++||+++|++|+|+||+||||++||++ ++|||.+|||++|||+||.|.+++++++..+++|+.+|++|
T Consensus       287 lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G  366 (386)
T PLN03139        287 IVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKG  366 (386)
T ss_pred             EEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999986 47999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 015895          347 YPIW  350 (398)
Q Consensus       347 ~~~~  350 (398)
                      +++.
T Consensus       367 ~~~~  370 (386)
T PLN03139        367 EDFP  370 (386)
T ss_pred             CCCC
Confidence            8754

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.2e-64  Score=504.54  Aligned_cols=323  Identities=25%  Similarity=0.297  Sum_probs=267.3

Q ss_pred             eCCCCCeEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccC
Q 015895           10 WNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAG   86 (398)
Q Consensus        10 ~~~~~~~kvlv~~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~   86 (398)
                      +-.++++|||++.+..+.  .| .+.++..+  +..+.    ..+.+|+.+.+.+ +|+++++ ..++++++++++|+| 
T Consensus        13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~e~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L-   83 (347)
T PLN02928         13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYP--FIQVD----AVAREDVPDVIAN-YDICVPK-MMRLDADIIARASQM-   83 (347)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHhhcCC--eeEec----CCCHHHHHHHhcC-CcEEEEC-CCCCCHHHHhcCCCc-
Confidence            445677899999876653  12 34444333  22222    1356788887774 9998876 457999999999988 


Q ss_pred             CceEEEeeccccccCchHhhhcCceEEecCCC---CCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCccccccc
Q 015895           87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL  163 (398)
Q Consensus        87 ~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l  163 (398)
                       |+|++.|+|+|++|++++.++||.|+|+|++   ++.+||||+++++|+++|++..+++.+++|.|   ..  ..+.+|
T Consensus        84 -k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w---~~--~~~~~l  157 (347)
T PLN02928         84 -KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRL---GE--PIGDTL  157 (347)
T ss_pred             -eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCc---cc--ccccCC
Confidence             9999999999999999999999999999985   78999999999999999999999999999984   32  356799


Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      +|||+||||+|+||+.+|+++ ++|||+|++|||+.................... ..  .....+++|++++||+|++|
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLV-DE--KGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhhccccccccccc-cc--cCcccCHHHHHhhCCEEEEC
Confidence            999999999999999999997 799999999999753321100000000000000 00  01246899999999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIA  322 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia  322 (398)
                      +|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+|
T Consensus       234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia  313 (347)
T PLN02928        234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVA  313 (347)
T ss_pred             CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999975 57999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 015895          323 SASKWTREGMATLAALNVLGKIKGYPIWG  351 (398)
Q Consensus       323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~~~  351 (398)
                      +.|.+++++++..+++|+.+|++|+++.|
T Consensus       314 ~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  342 (347)
T PLN02928        314 GVTEYSYRSMGKIVGDAALQLHAGRPLTG  342 (347)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence            99999999999999999999999998754

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=6.9e-64  Score=495.94  Aligned_cols=313  Identities=27%  Similarity=0.401  Sum_probs=268.8

Q ss_pred             eEEEEeCCCCc--hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           16 YRVVSTKPMPG--TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        16 ~kvlv~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      |||++.+.-+.  +-..+.+++.++++...  +. .++++. .+.+. ++|+++++..+++++++++++|+.++|+|++.
T Consensus         2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~--~~-~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~   76 (330)
T PRK12480          2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTS--KE-LLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQR   76 (330)
T ss_pred             cEEEEEeCcHHHHHHHHHHHHhcCeEEEEc--CC-CCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence            77877654332  21344556666555432  22 356665 55665 49999998777899999999984345999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+|+||+++|+++||.|+|+|++++++||||++++||++.|+++.+++.+++|.|. |.+. ..|++|+|++|||||+
T Consensus        77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~  154 (330)
T PRK12480         77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT  154 (330)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999874 6432 3578999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (398)
Q Consensus       174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l  253 (398)
                      |+||+.+|+++ ++|||+|++||++.......                  .....++++++++||+|++|+|++++|+++
T Consensus       155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~~------------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l  215 (330)
T PRK12480        155 GRIGAATAKIY-AGFGATITAYDAYPNKDLDF------------------LTYKDSVKEAIKDADIISLHVPANKESYHL  215 (330)
T ss_pred             CHHHHHHHHHH-HhCCCEEEEEeCChhHhhhh------------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence            99999999997 79999999999987542110                  012358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC----------C----CCCCCCCceEEcC
Q 015895          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVP  319 (398)
Q Consensus       254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~----------~----~~L~~~~nvilTP  319 (398)
                      ++++.|++||+|++|||+|||.+||++||+++|++|+++||+||||++||+.          +    +|||++|||++||
T Consensus       216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  295 (330)
T PRK12480        216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP  295 (330)
T ss_pred             HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence            9999999999999999999999999999999999999999999999999952          1    2699999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       320 Hia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      |+|+.|.++++++...+++|+.+|++|+...+.||
T Consensus       296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~  330 (330)
T PRK12480        296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence            99999999999999999999999999999988874

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=2.2e-63  Score=493.24  Aligned_cols=317  Identities=24%  Similarity=0.380  Sum_probs=272.5

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      ++++++++++.+.. +++.+.+. +++++..... ..++ |..+.+. ++|++++++.+++++++++++|++++|+|++.
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~-e~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~   76 (332)
T PRK08605          2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALTD-DNVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR   76 (332)
T ss_pred             cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCCH-HHHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence            56788888876654 66666553 2333322111 2344 4456665 49999998888999999999998667999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++...++.+++|.|. |.+. ..|++|+|++|||||+
T Consensus        77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG~  154 (332)
T PRK08605         77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIGT  154 (332)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999874 7542 3578999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (398)
Q Consensus       174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l  253 (398)
                      |+||+++|++++++|||+|++||++.......            .     .....++++++++||+|++|+|++++|+++
T Consensus       155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvIvl~lP~t~~t~~l  217 (332)
T PRK08605        155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT------------Y-----VDYKDTIEEAVEGADIVTLHMPATKYNHYL  217 (332)
T ss_pred             CHHHHHHHHHHHhcCCCEEEEECCCccHhHHh------------h-----ccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence            99999999997458999999999987542111            0     112358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC--C-CC-----------CCCCCCceEEcC
Q 015895          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M-KP-----------GLSEMKNAIVVP  319 (398)
Q Consensus       254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~--~-~~-----------~L~~~~nvilTP  319 (398)
                      ++++.|+.||+|++|||+|||.++|+++|+++|++|+|+||+||||+.||+  + ++           +||++|||++||
T Consensus       218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  297 (332)
T PRK08605        218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP  297 (332)
T ss_pred             cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence            999999999999999999999999999999999999999999999999983  2 22           499999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       320 Hia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      |+|++|.++++++...+++|+.+|++|++..+.||
T Consensus       298 Hia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~  332 (332)
T PRK08605        298 HIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN  332 (332)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999999999998874

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=5.1e-62  Score=475.54  Aligned_cols=298  Identities=38%  Similarity=0.540  Sum_probs=260.3

Q ss_pred             CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-hccCCceEEEeeccccccCchHhhhcCceEEec
Q 015895           37 DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNT  115 (398)
Q Consensus        37 ~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~-~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~  115 (398)
                      +++.......+...+.+++...+.+...++.+.....++.+.+.++ |++  |+|.++|+|+||||+++|++|||.|+|+
T Consensus        36 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~nv  113 (336)
T KOG0069|consen   36 GYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVANV  113 (336)
T ss_pred             cccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEecc
Confidence            3333333333334556666656554345555555667888888887 877  9999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE
Q 015895          116 PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY  195 (398)
Q Consensus       116 p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~  195 (398)
                      |+.++.+|||++++++|.++|++..+++++++|.| .|....+.|..+.||||||+|+|+||+.+|+|| ++||+.+.|+
T Consensus       114 p~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y~  191 (336)
T KOG0069|consen  114 PDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILYH  191 (336)
T ss_pred             CCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeeee
Confidence            99999999999999999999999999999999999 788877888999999999999999999999998 7999889998


Q ss_pred             cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       196 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +|++....+.  ..+       .      ....+++|++++||+|++|||+|++|+|+||+++|++||+|++|||++||.
T Consensus       192 ~r~~~~~~~~--~~~-------~------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~  256 (336)
T KOG0069|consen  192 SRTQLPPEEA--YEY-------Y------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGA  256 (336)
T ss_pred             cccCCchhhH--HHh-------c------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccc
Confidence            8876532111  001       1      113589999999999999999999999999999999999999999999999


Q ss_pred             hhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 015895          276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNP  353 (398)
Q Consensus       276 ~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~v  353 (398)
                      ++|++++++||++|++.||+||||++||.+++||++++||++|||+|++|.+++++|+..++.|+.+++.|+++...+
T Consensus       257 iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~  334 (336)
T KOG0069|consen  257 IIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV  334 (336)
T ss_pred             cccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence            999999999999999999999999999977889999999999999999999999999999999999999999987766

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=2.4e-59  Score=468.26  Aligned_cols=278  Identities=27%  Similarity=0.363  Sum_probs=242.4

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (398)
                      ||||+.+.++.  ..+.+.+.+ ++....  ....+.+++    . ++|++++++.+++++++++ .+++  |+|+++++
T Consensus         1 mkIl~d~~~~~--~~~~~~~~~-ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~   67 (378)
T PRK15438          1 MKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA   67 (378)
T ss_pred             CEEEEeCCcch--HHHHHhhcC-cEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence            68999988863  356676653 665543  334565553    3 5999999999999999986 6776  99999999


Q ss_pred             cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 015895           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (398)
Q Consensus        96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (398)
                      |+||||+++++++||.|+|+||+|+.+||||++++||++.|+.                     |.+|.||||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~  126 (378)
T PRK15438         68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN  126 (378)
T ss_pred             cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence            9999999999999999999999999999999999999999951                     2479999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh----hh
Q 015895          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (398)
Q Consensus       176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~----T~  251 (398)
                      ||+.+|+++ ++|||+|++|||.....               +.    .....++++++++||+|++|+|+|++    |+
T Consensus       127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~~----~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~  186 (378)
T PRK15438        127 VGRRLQARL-EALGIKTLLCDPPRADR---------------GD----EGDFRSLDELVQEADILTFHTPLFKDGPYKTL  186 (378)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc---------------cc----ccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence            999999997 79999999999854321               00    01235899999999999999999996    99


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      +|||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++|+..++ |+|||+||+|.+++.+
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~  265 (378)
T PRK15438        187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKAR  265 (378)
T ss_pred             cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988888988665 9999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 015895          332 MATLAALNVLGKIKGYPI  349 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~  349 (398)
                      +..++++|+.+|+ |.+.
T Consensus       266 ~~~~~~~~l~~~~-~~~~  282 (378)
T PRK15438        266 GTTQVFEAYSKFI-GHEQ  282 (378)
T ss_pred             HHHHHHHHHHHHH-cCcc
Confidence            9999999999998 5554

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.2e-58  Score=464.45  Aligned_cols=283  Identities=25%  Similarity=0.327  Sum_probs=244.7

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (398)
                      ||||+.+.++-  ..+.+.+.+ ++....  ...++.+.    +. ++|++++++.+++++++++ .++|  |+|+++++
T Consensus         1 mkI~~d~~~p~--~~~~~~~~~-~v~~~~--~~~~~~~~----l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~   67 (381)
T PRK00257          1 MKIVADENIPL--LDAFFAGFG-EIRRLP--GRAFDRAA----VR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI   67 (381)
T ss_pred             CEEEEecCchh--HHHHHhhCC-cEEEcC--CcccCHHH----hC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence            78999998863  245555543 555443  22344443    33 5999999998999999997 4766  99999999


Q ss_pred             cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 015895           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (398)
Q Consensus        96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (398)
                      |+||||+++++++||.|+|+||+|+.+||||+++++|+++|+                     .|.++.||||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~  126 (381)
T PRK00257         68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH  126 (381)
T ss_pred             cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence            999999999999999999999999999999999999999884                     13579999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCh----hhh
Q 015895          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY  251 (398)
Q Consensus       176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~----~T~  251 (398)
                      ||+.+|+++ ++|||+|++|||..... +             +     .....+++|++++||+|++|+|+|+    +|+
T Consensus       127 IG~~va~~l-~a~G~~V~~~Dp~~~~~-~-------------~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~  186 (381)
T PRK00257        127 VGGRLVRVL-RGLGWKVLVCDPPRQEA-E-------------G-----DGDFVSLERILEECDVISLHTPLTKEGEHPTR  186 (381)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc-c-------------c-----CccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence            999999997 79999999999864321 0             0     1123589999999999999999999    599


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      +|||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||.++++|+.. |+++|||+||+|.+++.+
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r  265 (381)
T PRK00257        187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKAR  265 (381)
T ss_pred             ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888889985 999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCC
Q 015895          332 MATLAALNVLGKIKGYPIWGNP  353 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~v  353 (398)
                      +..++.+|+.+|+.+.+.....
T Consensus       266 ~~~~~~~nl~~~~~~~~~~~~~  287 (381)
T PRK00257        266 GTAQIYQALCRFFGIPARVSLT  287 (381)
T ss_pred             HHHHHHHHHHHHHcCCCccchh
Confidence            9999999999999987654443

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=2.6e-58  Score=452.77  Aligned_cols=296  Identities=20%  Similarity=0.238  Sum_probs=244.8

Q ss_pred             EEEEeCCC-CchHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           17 RVVSTKPM-PGTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        17 kvlv~~~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      .+++..+. ..+.|.+.|++.  ++++.....       ++    . .++|+++++..   +.+.++ .++|  |+|++.
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-------~~----~-~~a~~~~~~~~---~~~~l~-~~~L--k~I~~~   63 (312)
T PRK15469          2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-------GD----N-DPADYALVWHP---PVEMLA-GRDL--KAVFAL   63 (312)
T ss_pred             EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-------CC----C-ccCeEEEEeCC---ChHHhc-cCCc--eEEEEc
Confidence            45544433 444488888875  333332211       11    1 24899988753   456775 4776  999999


Q ss_pred             eccccccCchH-----hhhcCceEEecCC-CCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895           94 AVGYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (398)
Q Consensus        94 g~G~d~iD~~~-----~~~~gI~V~n~p~-~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt  167 (398)
                      |+|+|++|.+.     +..+||.|+|+++ +++.+||||++++||++.|+++++.+.+++|.|..     ..+.+++|||
T Consensus        64 ~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~-----~~~~~l~g~t  138 (312)
T PRK15469         64 GAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQP-----LPEYHREDFT  138 (312)
T ss_pred             ccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCC-----CCCCCcCCCE
Confidence            99999998332     3458999999975 68999999999999999999999999999998542     1346899999


Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt  247 (398)
                      |||||+|+||+.+|+++ ++|||+|++||++.+...              +..  .+....++++++++||+|++|+|+|
T Consensus       139 vgIvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt  201 (312)
T PRK15469        139 IGILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNT  201 (312)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCC
Confidence            99999999999999997 799999999998764310              000  0112358999999999999999999


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCCcH
Q 015895          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK  326 (398)
Q Consensus       248 ~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~T~  326 (398)
                      ++|+++||++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++. +|||++|||++|||+|+.|.
T Consensus       202 ~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~  281 (312)
T PRK15469        202 PETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTR  281 (312)
T ss_pred             HHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999864 79999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          327 WTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       327 ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      ++  ++...+.+|+.+|++|+++.|.||
T Consensus       282 ~~--~~~~~~~~n~~~~~~g~~~~~~V~  307 (312)
T PRK15469        282 PA--EAVEYISRTIAQLEKGERVCGQVD  307 (312)
T ss_pred             HH--HHHHHHHHHHHHHHcCCCCcccCC
Confidence            74  578899999999999999999884

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3e-57  Score=443.12  Aligned_cols=286  Identities=21%  Similarity=0.302  Sum_probs=237.5

Q ss_pred             eEEEEeCCCCchHHHHHHHh--CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           16 YRVVSTKPMPGTRWINLLIE--QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      |++++..++++. ..+.+.+  .++++..  .++           .. ++|+++++..       .-..++|  |+|++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~-----------~~-~a~~~~~~~~-------~~~~~~L--k~I~~~   56 (303)
T PRK06436          1 MNVYVNFPMSKK-LLEICRDILDLDDVHW--YPD-----------YY-DAEAILIKGR-------YVPGKKT--KMIQSL   56 (303)
T ss_pred             CeEEEEccCCHH-HHHHHHhhcccceeEe--ccc-----------cC-CCCEEEecCC-------cCCCCCe--EEEEEC
Confidence            346666777764 5565543  2333332  111           11 4788765532       1234666  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+|+||+++|+++||.++| +|+++.+||||++++||+++|++++.++.+++|+|..   .  .+.+|+||||||||+
T Consensus        57 ~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~---~--~~~~L~gktvgIiG~  130 (303)
T PRK06436         57 SAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQ---S--PTKLLYNKSLGILGY  130 (303)
T ss_pred             CcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCC---C--CCCCCCCCEEEEECc
Confidence            999999999999998887777 5889999999999999999999999999999998543   2  357999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (398)
Q Consensus       174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l  253 (398)
                      |+||+++|+++ ++|||+|++|||+..+.               +..    ....++++++++||+|++|+|+|++|+++
T Consensus       131 G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~----~~~~~l~ell~~aDiv~~~lp~t~~T~~l  190 (303)
T PRK06436        131 GGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS----SIYMEPEDIMKKSDFVLISLPLTDETRGM  190 (303)
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc----cccCCHHHHHhhCCEEEECCCCCchhhcC
Confidence            99999999997 89999999999975321               110    11358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCC-CCcHHHHHHH
Q 015895          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA-SASKWTREGM  332 (398)
Q Consensus       254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia-~~T~ea~~~~  332 (398)
                      |+++.|++||+|++|||+|||+++|++||+++|++|++.||+||||++||++.+.  .+|||++|||++ +.|.++++++
T Consensus       191 i~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~  268 (303)
T PRK06436        191 INSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPA  268 (303)
T ss_pred             cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999986532  689999999986 5899999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCC
Q 015895          333 ATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       333 ~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      ...+++|+.+|++|++ .|.||
T Consensus       269 ~~~~~~ni~~~~~g~~-~~~V~  289 (303)
T PRK06436        269 VALAFENIKNFFEGKP-KNIVR  289 (303)
T ss_pred             HHHHHHHHHHHHcCCC-CceEc
Confidence            9999999999999987 57774

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=5.5e-48  Score=351.06  Aligned_cols=177  Identities=42%  Similarity=0.570  Sum_probs=152.7

Q ss_pred             HHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH
Q 015895          128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV  207 (398)
Q Consensus       128 l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~  207 (398)
                      +++||++.|+++.+++.+++|.|  |.+....+.+++|+||||||+|+||+.+|+++ ++|||+|++|||+..+....  
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~--   75 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA--   75 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH--
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc--
Confidence            68999999999999999999997  34445678899999999999999999999997 89999999999998764310  


Q ss_pred             hhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                             ..     .++ ...+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|+
T Consensus        76 -------~~-----~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   76 -------DE-----FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             -------HH-----TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             -------cc-----ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence                   00     112 34689999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCC
Q 015895          288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA  322 (398)
Q Consensus       288 ~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia  322 (398)
                      +|++.||+||||++||++. +|||++|||++|||+|
T Consensus       143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence            9999999999999999875 5999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.98  E-value=2.3e-32  Score=264.92  Aligned_cols=280  Identities=28%  Similarity=0.371  Sum_probs=240.0

Q ss_pred             CCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHH
Q 015895           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (398)
Q Consensus        50 ~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~  129 (398)
                      .+..|+.+.+-.++-+-+...+..++++-+++.+.+  +++.+.|.|+|++|+.+|.+.||.|||.|+...+.+|+-++.
T Consensus        61 qstqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~  138 (435)
T KOG0067|consen   61 QSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLC  138 (435)
T ss_pred             cchHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHH
Confidence            466777765544455555555667889999999988  999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchHHHHHHHHcCccC-CCCCC---cccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH
Q 015895          130 LSLAAARRIVEADEFMRAGLYD-GWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (398)
Q Consensus       130 l~L~~~R~~~~~~~~~~~g~~~-~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~  205 (398)
                      ++|.++|+.....+.+++|.|. .|...   ......++|.++|++|+|+.|+.++.+ |++||..|+.|||+...-.+.
T Consensus       139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~  217 (435)
T KOG0067|consen  139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK  217 (435)
T ss_pred             HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh
Confidence            9999999999999999999863 22211   112256899999999999999999999 599999999999998764433


Q ss_pred             HHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHH
Q 015895          206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH  285 (398)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~a  285 (398)
                      +               .+...+.++.+++.++|.+++|+.+++.+.++|+.-.+.+|+.|++++|++||+++|+++|.++
T Consensus       218 ~---------------lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqa  282 (435)
T KOG0067|consen  218 S---------------LGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQA  282 (435)
T ss_pred             h---------------cccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhh
Confidence            1               2334456799999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccEEEeccCCCCCC--CCCCCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC---CCCCCC
Q 015895          286 LKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP---IWGNPN  354 (398)
Q Consensus       286 L~~g~i~gAalDV~~~EP~--~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g~~---~~~~vn  354 (398)
                      |+.|++.+++       |.  ...||.+-||.++|||.++.+..+...+.+.++..+++...|..   +++.||
T Consensus       283 Lk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvn  349 (435)
T KOG0067|consen  283 LKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVN  349 (435)
T ss_pred             hccCceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHh
Confidence            9999999998       22  12478899999999999999999999999999999999998854   566664

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.86  E-value=4.9e-21  Score=195.70  Aligned_cols=170  Identities=19%  Similarity=0.299  Sum_probs=136.5

Q ss_pred             eeccccccC-chHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 015895           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (398)
Q Consensus        93 ~g~G~d~iD-~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (398)
                      .++|+..+- ++.....+|+|+|+|++++.++||+++++++++...      .+|.+           +.++.||++||+
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~------~~R~~-----------~~~LaGKtVgVI  260 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDG------IFRAT-----------DVMIAGKTVVVC  260 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHH------HHHhc-----------CCCcCCCEEEEE
Confidence            367776552 233344689999999999999999999999998843      34443           257999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhh
Q 015895          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (398)
Q Consensus       172 GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~  251 (398)
                      |+|.||+.+|+++ ++|||+|+++++++....+..         .     .++. ..+++++++.||+|++|+    .|+
T Consensus       261 G~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~---------~-----~G~~-~~~leell~~ADIVI~at----Gt~  320 (476)
T PTZ00075        261 GYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAA---------M-----EGYQ-VVTLEDVVETADIFVTAT----GNK  320 (476)
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHH---------h-----cCce-eccHHHHHhcCCEEEECC----Ccc
Confidence            9999999999997 799999999987765432210         0     1222 247999999999999985    478


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC
Q 015895          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK  306 (398)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~  306 (398)
                      ++|+++.|+.||+|++|||++|+   |++.++++|+++.    ++|+++.||...
T Consensus       321 ~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        321 DIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             cccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            99999999999999999999999   7888889998753    799999999754

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.85  E-value=2.3e-20  Score=161.49  Aligned_cols=101  Identities=32%  Similarity=0.441  Sum_probs=88.1

Q ss_pred             EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeeccc
Q 015895           18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (398)
Q Consensus        18 vlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~   97 (398)
                      ||+++++++. .++.|++ ++++++..    ..+.+++.+.+.+ +|+++++..+++++++++.+|+|  |+|++.|+|+
T Consensus         1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~~-~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~   71 (133)
T PF00389_consen    1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLKD-ADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV   71 (133)
T ss_dssp             EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHTT-ESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred             eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhCC-CeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence            7899999875 6899988 66887765    3578899998875 99999998888999999999988  9999999999


Q ss_pred             cccCchHhhhcCceEEecCCCCCchHHHHH
Q 015895           98 NNVDVNAANKYGIAVGNTPGVLTETTAELA  127 (398)
Q Consensus        98 d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~  127 (398)
                      |+||+++|+++||.|+|+||+++.+||||+
T Consensus        72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.83  E-value=1.6e-19  Score=175.92  Aligned_cols=200  Identities=19%  Similarity=0.179  Sum_probs=145.4

Q ss_pred             HHHHHHhCCCeEEEecCCCC-----CCCHHHHHHHhcCCCcEEEec----------------CCccccHHHHHHhhccCC
Q 015895           29 WINLLIEQDCRVEICTQKKT-----ILSVEDIIALIGDKCDGVIGQ----------------LTEDWGETLFAALSRAGG   87 (398)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~-----~~~~eel~~~~~~~~d~vi~~----------------~~~~~~~~~l~~~~~l~~   87 (398)
                      ..+.|.+.|+.+..+-.+..     .....++.+..-.++|++|.-                ....+++++++++|.   
T Consensus        16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~---   92 (287)
T TIGR02853        16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG---   92 (287)
T ss_pred             HHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcCC---
Confidence            45667788888766533211     011222222211248888842                123467888888872   


Q ss_pred             ceEEEeeccccccCch-HhhhcCceEE------ecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccc
Q 015895           88 KAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (398)
Q Consensus        88 k~i~~~g~G~d~iD~~-~~~~~gI~V~------n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g  160 (398)
                        ++...+|+++.|++ +|+++||.|+      |++.+|+.++||+++.+++..                        .+
T Consensus        93 --~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~~  146 (287)
T TIGR02853        93 --HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------TD  146 (287)
T ss_pred             --CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------cC
Confidence              45566788888888 9999999999      999999999999999977642                        11


Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+++|++++|+|+|.||+.+|++| +++|++|++++|+.......         ...+...   ....+++++++++|+|
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~---------~~~g~~~---~~~~~l~~~l~~aDiV  213 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLARI---------TEMGLIP---FPLNKLEEKVAEIDIV  213 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH---------HHCCCee---ecHHHHHHHhccCCEE
Confidence            379999999999999999999998 79999999999987542111         1112111   1224578889999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      ++|+|.+     +++++.++.||+++++||++...
T Consensus       214 int~P~~-----ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       214 INTIPAL-----VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             EECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence            9999963     77889999999999999998843

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.66  E-value=6.5e-15  Score=144.29  Aligned_cols=196  Identities=19%  Similarity=0.168  Sum_probs=142.4

Q ss_pred             HHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCCcEEEecCC----------------ccccHHHHHHhh
Q 015895           29 WINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAALS   83 (398)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~---------~~eel~~~~~~~~d~vi~~~~----------------~~~~~~~l~~~~   83 (398)
                      ..+.|.+.|+++.+...++...         +.++   .+. ++|+++.-.+                ..++++.++.+|
T Consensus        17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~   92 (296)
T PRK08306         17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP   92 (296)
T ss_pred             HHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence            4677888898887654332211         2223   233 4898885311                124678999999


Q ss_pred             ccCCceEEEeeccccccCchHhhhcCceEEecCCC------CCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCc
Q 015895           84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL  157 (398)
Q Consensus        84 ~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~------~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~  157 (398)
                      +.  ..+ ..|.+.+++| +.|.++||.+.+.+..      |+.++||.++.+.+.  +                     
T Consensus        93 ~~--~~v-~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~--~---------------------  145 (296)
T PRK08306         93 EH--CTI-FSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE--H---------------------  145 (296)
T ss_pred             CC--CEE-EEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH--h---------------------
Confidence            86  533 3699999998 8899999999998864      889999997775432  1                     


Q ss_pred             ccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       158 ~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                       .+.+++|++++|||+|.+|+.++++| +++|++|.++|+++.....         ....+..   .....++.+.++++
T Consensus       146 -~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~---------~~~~G~~---~~~~~~l~~~l~~a  211 (296)
T PRK08306        146 -TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLAR---------ITEMGLS---PFHLSELAEEVGKI  211 (296)
T ss_pred             -CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHH---------HHHcCCe---eecHHHHHHHhCCC
Confidence             11368899999999999999999997 7999999999998754211         1112211   11224677889999


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      |+|+.++|.     .+++++.++.|++++++||++..
T Consensus       212 DiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        212 DIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             CEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence            999999983     56889999999999999999863

>PLN02494 adenosylhomocysteinase

Probab=99.61  E-value=1.8e-15  Score=154.66  Aligned_cols=122  Identities=19%  Similarity=0.281  Sum_probs=101.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..+.||+++|+|+|.||+.+|+++ ++|||+|+++++++....+..         .     .++. ..+++++++.+|+|
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~---------~-----~G~~-vv~leEal~~ADVV  313 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQAL---------M-----EGYQ-VLTLEDVVSEADIF  313 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHH---------h-----cCCe-eccHHHHHhhCCEE
Confidence            458999999999999999999997 899999999998765422210         0     1122 23689999999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC-CchhcHHHHHHH--HhcCCccEEEeccCCCCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP  303 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR-G~~vde~aL~~a--L~~g~i~gAalDV~~~EP  303 (398)
                      +.+    ..++++|+.+.|+.||+|++|+|++| +..||+++|.++  ++.+.+. +.+|+|+.|-
T Consensus       314 I~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        314 VTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             EEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            973    36789999999999999999999999 679999999998  8988887 9999998763

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.61  E-value=3.3e-14  Score=144.13  Aligned_cols=121  Identities=26%  Similarity=0.288  Sum_probs=101.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++....+.         ..     .++ ...+++++++.+|+|
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A---------~~-----~G~-~v~~leeal~~aDVV  254 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEA---------AM-----DGF-RVMTMEEAAKIGDIF  254 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHH---------Hh-----cCC-EeCCHHHHHhcCCEE
Confidence            358999999999999999999997 89999999998876543221         01     122 224678899999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcCCccEEEeccCCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFED  301 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g~i~gAalDV~~~  301 (398)
                      +.++    .+.++|+.+.|..||+|++++|++|+++ ||.++|.+++.+.+..+..+|+|.-
T Consensus       255 ItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       255 ITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             EECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            8765    3688999999999999999999999998 9999999999888888999999874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.48  E-value=1.3e-13  Score=135.04  Aligned_cols=93  Identities=26%  Similarity=0.334  Sum_probs=75.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..|+||||||||+|+||+.+|++| ++||++|++|++..... +.        ....+     +. ..+++|++++||+|
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~--------A~~~G-----~~-v~sl~Eaak~ADVV   75 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EV--------AKADG-----FE-VMSVSEAVRTAQVV   75 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HH--------HHHcC-----CE-ECCHHHHHhcCCEE
Confidence            479999999999999999999998 79999999998653221 11        01112     22 24899999999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                      ++|+|+ ++++++++.+.++.||+|++|+-
T Consensus        76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f  104 (335)
T PRK13403         76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF  104 (335)
T ss_pred             EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence            999997 77899999999999999998865

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.47  E-value=3.1e-12  Score=130.50  Aligned_cols=155  Identities=21%  Similarity=0.251  Sum_probs=111.6

Q ss_pred             eecccccc-CchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 015895           93 MAVGYNNV-DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (398)
Q Consensus        93 ~g~G~d~i-D~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (398)
                      .++|+..+ ..+...+.+++|.|++.+++.+..|...+.-.+....+.      +           ..+..+.|++++|+
T Consensus       156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------r-----------at~~~l~Gk~VlVi  218 (425)
T PRK05476        156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------R-----------ATNVLIAGKVVVVA  218 (425)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------H-----------hccCCCCCCEEEEE
Confidence            46677655 333334578999999999998865544332222221111      0           11235899999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhh
Q 015895          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (398)
Q Consensus       172 GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~  251 (398)
                      |+|.||+.+|+++ +++|++|+++|+++....+..         .     .++. ..+++++++.+|+|+.++    .+.
T Consensus       219 G~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~---------~-----~G~~-v~~l~eal~~aDVVI~aT----G~~  278 (425)
T PRK05476        219 GYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAA---------M-----DGFR-VMTMEEAAELGDIFVTAT----GNK  278 (425)
T ss_pred             CCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHH---------h-----cCCE-ecCHHHHHhCCCEEEECC----CCH
Confidence            9999999999997 799999999998875432210         0     1222 246889999999998876    457


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 015895          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (398)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~  284 (398)
                      ++|+.+.|..||+|++++|+++... +|.++|.+
T Consensus       279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        279 DVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            7899999999999999999999876 77777654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.39  E-value=1.9e-12  Score=115.92  Aligned_cols=116  Identities=24%  Similarity=0.269  Sum_probs=87.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|++| ...|.+|.+||+++.... .+        ...+     .....++.|++++||+|++++|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~~-~~--------~~~g-----~~~~~s~~e~~~~~dvvi~~v~   66 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKAE-AL--------AEAG-----AEVADSPAEAAEQADVVILCVP   66 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHHH-HH--------HHTT-----EEEESSHHHHHHHBSEEEE-SS
T ss_pred             CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhhh-hh--------HHhh-----hhhhhhhhhHhhcccceEeecc
Confidence            5899999999999999998 578999999999875432 21        1122     3456799999999999999999


Q ss_pred             CChhhhhhcc-HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEecc
Q 015895          246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (398)
Q Consensus       246 lt~~T~~li~-~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV  298 (398)
                      ..++++.++. .+.++.+++|.++||++..++-+...+.+.+.+..+  ..+|.
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vda  118 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVDA  118 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEEE
T ss_pred             cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccc--eeeee
Confidence            8888888763 237888999999999999999999999999987553  44553

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.36  E-value=5.3e-12  Score=122.34  Aligned_cols=124  Identities=23%  Similarity=0.176  Sum_probs=100.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++||+||+|.||+.+|++| ..-|+.|.+||+++.+..+.        +...|     .....+..|+.+.||+|++|+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~--------~~~~G-----a~~a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL--------LAAAG-----ATVAASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH--------HHHcC-----CcccCCHHHHHHhCCEEEEecC
Confidence            4799999999999999998 68999999999998763322        12223     3345678899999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP  303 (398)
                      .+++.+.++.  ...++.+|+|+++||+|+.+....+.+.++++...+...=-=|....+
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            9999999885  679999999999999999999999999999998865443222444444

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.31  E-value=1.3e-11  Score=109.78  Aligned_cols=103  Identities=29%  Similarity=0.423  Sum_probs=74.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..+.||++.|+|||.+|+.+|++| +++|++|.+++..|-..++...+              +++ ..+++|+++++|++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~d--------------Gf~-v~~~~~a~~~adi~   82 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMD--------------GFE-VMTLEEALRDADIF   82 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHT--------------T-E-EE-HHHHTTT-SEE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhc--------------CcE-ecCHHHHHhhCCEE
Confidence            569999999999999999999997 89999999999998776655333              232 35799999999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~  283 (398)
                      +.++.    .+++|..+.|.+||+|+++.|++.-.. +|-+.|.
T Consensus        83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~  122 (162)
T PF00670_consen   83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALE  122 (162)
T ss_dssp             EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred             EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeecccc
Confidence            98875    377889999999999999999988654 5555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.27  E-value=3.6e-11  Score=117.35  Aligned_cols=111  Identities=20%  Similarity=0.179  Sum_probs=89.1

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Pl  246 (398)
                      +|||||+|.||+.+|+++ ...|++|++||+++... +.+        ...+     .....++++++++||+|++|+|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DEL--------LAAG-----AVTAETARQVTEQADVIFTMVPD   65 (291)
T ss_pred             CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHCC-----CcccCCHHHHHhcCCEEEEecCC
Confidence            489999999999999998 57899999999987542 221        1122     22245788999999999999998


Q ss_pred             Chhhhhhc-c-HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       247 t~~T~~li-~-~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++.++.++ + ...+..+++|.++||++++.+.+.+++.+.+++..+.
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            88887775 3 3467889999999999999999999999999886543

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.26  E-value=4.4e-11  Score=116.86  Aligned_cols=123  Identities=20%  Similarity=0.213  Sum_probs=95.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|+.+ ...|++|++||+++.... ..        ...+     .....++++++++||+|++|+|
T Consensus         3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~~-~~--------~~~g-----~~~~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAVA-EV--------IAAG-----AETASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HH--------HHCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence            5799999999999999998 578999999999875421 11        1112     1234578999999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP  303 (398)
                      .+.+++.++.  .+.+..+++|.++||+++..+...+++.+.+.+..+...-.-|+..+|
T Consensus        68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            8888887764  346788999999999999999888999999987655443334555444

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.24  E-value=3.7e-10  Score=115.14  Aligned_cols=105  Identities=25%  Similarity=0.384  Sum_probs=83.3

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      +..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++......         ...|     +. ..++++.+..+|+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A---------~~~G-----~~-~~~~~e~v~~aDV  260 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA---------AMEG-----YE-VMTMEEAVKEGDI  260 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH---------HhcC-----CE-EccHHHHHcCCCE
Confidence            4568999999999999999999996 89999999999876542211         1112     22 2356788899999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~  284 (398)
                      |+.+..    +.++++.+.|..||+|++++|++++.+ +|..+|..
T Consensus       261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            998764    467888889999999999999999876 78777764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.20  E-value=1.2e-10  Score=114.22  Aligned_cols=112  Identities=13%  Similarity=0.180  Sum_probs=90.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||..+|+++ ...|.+|.+||+++... +.+        ...+     .....++.+++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l-~~~G~~V~v~d~~~~~~-~~~--------~~~g-----~~~~~s~~~~~~~aDvVi~~vp   66 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNL-LKQGHQLQVFDVNPQAV-DAL--------VDKG-----ATPAASPAQAAAGAEFVITMLP   66 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHcC-----CcccCCHHHHHhcCCEEEEecC
Confidence            3799999999999999998 57899999999987542 221        1112     2234678899999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ....++.++.  ...+..+++|.++||++++.+...+.+.+.+.+..+.
T Consensus        67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            8777777764  3467789999999999999999999999999887654

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.20  E-value=1.5e-10  Score=113.61  Aligned_cols=114  Identities=19%  Similarity=0.285  Sum_probs=91.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l  242 (398)
                      ++|||||+|+||+.+|++| ...|.+|++||++++.. +.        +...+     .....++++++++   +|+|++
T Consensus         1 m~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~--------~~~~g-----~~~~~s~~~~~~~~~~advVi~   65 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DV--------AGKLG-----ITARHSLEELVSKLEAPRTIWV   65 (299)
T ss_pred             CEEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HH--------HHHCC-----CeecCCHHHHHHhCCCCCEEEE
Confidence            3799999999999999998 57899999999987542 11        11112     2234678898876   699999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD  297 (398)
                      |+|..+.++.++ .+.+..+++|.++||++++...+..++.+.+++..+.  .+|
T Consensus        66 ~vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         66 MVPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             EecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            999887888888 4677889999999999999999999999999876643  466

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.10  E-value=7.2e-10  Score=108.89  Aligned_cols=111  Identities=21%  Similarity=0.269  Sum_probs=89.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l  242 (398)
                      ++|||||+|.||+.+|++| ...|.+|.+||+++.... .+        ...+     .....+++|+++.   +|+|++
T Consensus         1 m~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~~-~~--------~~~g-----~~~~~~~~e~~~~~~~~dvvi~   65 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAVE-AL--------AEEG-----ATGADSLEELVAKLPAPRVVWL   65 (301)
T ss_pred             CEEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHHH-HH--------HHCC-----CeecCCHHHHHhhcCCCCEEEE
Confidence            4799999999999999998 578999999999875432 11        1112     2234578888876   699999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++|..+.++.++ ...+..+++|.++||++++......++.+.+++..+.
T Consensus        66 ~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~  114 (301)
T PRK09599         66 MVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH  114 (301)
T ss_pred             EecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence            999877888877 4677889999999999999999999999999887654

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.07  E-value=1.2e-09  Score=113.84  Aligned_cols=128  Identities=12%  Similarity=0.143  Sum_probs=100.2

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEc
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l~  243 (398)
                      +|||||+|.||+.+|++| ...|.+|.+|||+++.. +.+.+..    ...|...  .....+++|+++.   +|+|+++
T Consensus         8 ~IG~IGLG~MG~~mA~nL-~~~G~~V~V~NRt~~k~-~~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNI-AEKGFPISVYNRTTSKV-DETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CEEEEeeHHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence            699999999999999998 57899999999987653 2221100    0012111  1134678888875   9999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP  303 (398)
                      +|..+.+..++ ...+..+++|.++||+++...-+...+.+.+++..+.....=|...++
T Consensus        80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            99999999988 568889999999999999999999999999998877766666776655

>PLN02712 arogenate dehydrogenase

Probab=99.05  E-value=1.4e-09  Score=117.35  Aligned_cols=113  Identities=17%  Similarity=0.216  Sum_probs=85.9

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cC
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA  237 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~a  237 (398)
                      .|.++.+++|||||+|.||+.+|+.+ +.+|++|++||++......          ...+     .....+++++++ .|
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~~a----------~~~G-----v~~~~~~~el~~~~a  426 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSDEA----------QKLG-----VSYFSDADDLCEEHP  426 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHHHH----------HHcC-----CeEeCCHHHHHhcCC
Confidence            46788999999999999999999998 6899999999997532111          1112     223457888776 59


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |+|++|+|. ..+..++.+-....||+|++++|++.++-...+++.+.+..
T Consensus       427 DvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        427 EVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             CEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            999999994 67888887655557999999999999875555555555544

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.04  E-value=8.5e-10  Score=109.30  Aligned_cols=119  Identities=23%  Similarity=0.232  Sum_probs=85.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..|+||+|||||+|+||+++|+.| +.+|++|+++++......+.        ....+     +.. .+.++++++||+|
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~--------A~~~G-----~~~-~s~~eaa~~ADVV   77 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK--------AEADG-----FEV-LTVAEAAKWADVI   77 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH--------HHHCC-----Cee-CCHHHHHhcCCEE
Confidence            468999999999999999999998 79999999887764332111        01112     222 4889999999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~  304 (398)
                      ++++|.+.. ..+++++.+..|++|++| -.+.|--+.  .+      ....+..+||+...|.
T Consensus        78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~--~~------~~~p~~~~~Vi~vaPn  131 (330)
T PRK05479         78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIH--FG------QIVPPADVDVIMVAPK  131 (330)
T ss_pred             EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChh--hc------eeccCCCCcEEEeCCC
Confidence            999997654 778778888999999988 556662221  11      0113456788887774

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.01  E-value=3e-09  Score=104.22  Aligned_cols=110  Identities=14%  Similarity=0.119  Sum_probs=87.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|+||+.+|++| ...|.+|.+||+++..  +.+        ...+     .....+..+++++||+|++++|
T Consensus         1 m~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~--------~~~g-----~~~~~s~~~~~~~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DEL--------LSLG-----AVSVETARQVTEASDIIFIMVP   64 (292)
T ss_pred             CeEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHH--------HHcC-----CeecCCHHHHHhcCCEEEEeCC
Confidence            3699999999999999998 5788999999987632  221        1122     2234678899999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      ..++++.++.  ...+..+++|.++||+++...-....+.+.+.+..+
T Consensus        65 ~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~  112 (292)
T PRK15059         65 DTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGG  112 (292)
T ss_pred             ChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            8878887763  236777899999999999999999999998887644

>PLN02256 arogenate dehydrogenase

Probab=98.98  E-value=1.9e-08  Score=99.16  Aligned_cols=109  Identities=15%  Similarity=0.205  Sum_probs=79.9

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV~  241 (398)
                      -++++|||||+|.||+.+|+.+ +..|.+|++||++......          ...+     +....++++++ ..+|+|+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a----------~~~g-----v~~~~~~~e~~~~~aDvVi   97 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA----------AELG-----VSFFRDPDDFCEEHPDVVL   97 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH----------HHcC-----CeeeCCHHHHhhCCCCEEE
Confidence            4667999999999999999998 6789999999988632111          1112     22235778876 4799999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +|+|. ..+..++.+-....++++++++|++.+.-+..+++.+.+..
T Consensus        98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256         98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            99995 46777775433667899999999999765555666666543

>PLN02858 fructose-bisphosphate aldolase

Probab=98.95  E-value=4.8e-09  Score=121.03  Aligned_cols=120  Identities=15%  Similarity=0.146  Sum_probs=96.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ..++||+||+|.||..||++| ...|.+|.+||+++... +.+        ...|     ...+.++.|+.+.||+|++|
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L-~~~G~~v~v~dr~~~~~-~~l--------~~~G-----a~~~~s~~e~a~~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSL-LRSGFKVQAFEISTPLM-EKF--------CELG-----GHRCDSPAEAAKDAAALVVV   67 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHH--------HHcC-----CeecCCHHHHHhcCCEEEEE
Confidence            356799999999999999998 57899999999987643 221        1222     23457899999999999999


Q ss_pred             cCCChhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEecc
Q 015895          244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (398)
Q Consensus       244 ~Plt~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV  298 (398)
                      +|..+.++.++  ....++.+++|.++||+|+..+-....+.+.+++..-....+|.
T Consensus        68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            99998888887  35678889999999999999999999999999875511235553

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.95  E-value=7e-09  Score=107.76  Aligned_cols=128  Identities=15%  Similarity=0.233  Sum_probs=98.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~---~aDiV~l  242 (398)
                      .+|||||+|.||+.+|++| ...|.+|.+||++++... .+.+.    ....+   .......+++|+++   ++|+|++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~-~l~~~----~~~~g---~~i~~~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTE-EFVKK----AKEGN---TRVKGYHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHHHh----hhhcC---CcceecCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999998 578999999999886532 11110    00001   11223468889886   5899999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP  303 (398)
                      ++|....++.++ .+.+..+++|.++||++.+..-|...+.+.+.+..+.....=|...++
T Consensus        73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            999888899988 467888999999999999999999999999998877655555666554

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.93  E-value=9.4e-09  Score=100.89  Aligned_cols=110  Identities=19%  Similarity=0.280  Sum_probs=84.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el---l~~aDiV~l  242 (398)
                      ++|||||+|.||..+|++| ...|.+|.+||+++... +.+        ...+.     ....+++++   ++.+|+|++
T Consensus         1 M~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l--------~~~g~-----~~~~s~~~~~~~~~~~dvIi~   65 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAM--------KEDRT-----TGVANLRELSQRLSAPRVVWV   65 (298)
T ss_pred             CEEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HHcCC-----cccCCHHHHHhhcCCCCEEEE
Confidence            4799999999999999998 57899999999987643 221        11221     112355554   456899999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++|.. .++.++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus        66 ~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        66 MVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             EcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            99976 778877 4677889999999999999888999998888876554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=98.92  E-value=6.5e-09  Score=119.97  Aligned_cols=109  Identities=19%  Similarity=0.268  Sum_probs=90.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      .++|||||+|.||..+|++| ...|++|.+||+++.... .        +...+     .....++.+++++||+|++|+
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~--------l~~~G-----a~~~~s~~e~~~~aDvVi~~V  388 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTLV-R--------FENAG-----GLAGNSPAEVAKDVDVLVIMV  388 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHcC-----CeecCCHHHHHhcCCEEEEec
Confidence            47899999999999999998 588999999999875432 1        11122     122468899999999999999


Q ss_pred             CCChhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       245 Plt~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |...+++.++  +...++.+++|.++||+++..+-..+.+.+.+.+
T Consensus       389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~  434 (1378)
T PLN02858        389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN  434 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence            9988898887  3567889999999999999999888999998887

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.91  E-value=5.4e-09  Score=100.69  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=93.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ....++||+||+|.||..+++.| -..|++|++||++.+...+         +..+|     .+...++.|+.+.||+|+
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nL-ik~G~kVtV~dr~~~k~~~---------f~~~G-----a~v~~sPaeVae~sDvvi   96 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNL-IKAGYKVTVYDRTKDKCKE---------FQEAG-----ARVANSPAEVAEDSDVVI   96 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHH-HHcCCEEEEEeCcHHHHHH---------HHHhc-----hhhhCCHHHHHhhcCEEE
Confidence            34678999999999999999998 6899999999999876422         12223     334578999999999999


Q ss_pred             EccCCChhhhhhcc--HHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhcCC
Q 015895          242 LHPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       242 l~~Plt~~T~~li~--~~~~~~mk~gail-IN~aRG~~vde~aL~~aL~~g~  290 (398)
                      .++|...+.+.++.  ...++..++|... |+.++.+.--...|.+++....
T Consensus        97 tmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~  148 (327)
T KOG0409|consen   97 TMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG  148 (327)
T ss_pred             EEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC
Confidence            99999999988873  4578888888888 9999998888888999988653

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.86  E-value=4.8e-08  Score=96.07  Aligned_cols=193  Identities=20%  Similarity=0.225  Sum_probs=122.6

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      -+.||++.|.|||..|+.+|.++ ++.|++|++++-.|-..++...+              |+ .+..++|....+|+++
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~Md--------------Gf-~V~~m~~Aa~~gDifi  269 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMD--------------GF-RVMTMEEAAKTGDIFV  269 (420)
T ss_pred             eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhc--------------Cc-EEEEhHHhhhcCCEEE
Confidence            58999999999999999999997 89999999998887766654332              23 2457899999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHH-HhcCCccEEEeccCCCCCCCC-C--CCCCCCceE
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH-LKQNPMFRVGLDVFEDEPYMK-P--GLSEMKNAI  316 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~a-L~~g~i~gAalDV~~~EP~~~-~--~L~~~~nvi  316 (398)
                      .++-    ++++|..++|..||+|+++-|.+.-.+ ||...|.+- ++...+... +|-|+-   ++ .  -|+.--+++
T Consensus       270 T~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~-V~ey~l---~~Gkri~llaeGRLv  341 (420)
T COG0499         270 TATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQ-VDEYEL---PDGKRIILLAEGRLV  341 (420)
T ss_pred             EccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccC-ceEEEc---CCCCEEEEEecceee
Confidence            8874    589999999999999999999998665 666665432 222223222 222221   11 1  111111111


Q ss_pred             EcCCCCCCcHHHH-HHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcceee
Q 015895          317 VVPHIASASKWTR-EGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLT  393 (398)
Q Consensus       317 lTPHia~~T~ea~-~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (398)
                      =.----|+..+-. ...+.++..++.-+-+.+.+.+.|.++ |    .          .+=++..++.....|.-+-.
T Consensus       342 NLa~a~GHPs~VMd~SFanQaLa~~~L~~n~~~~~~~Vy~l-P----~----------~lD~~VArl~L~~~G~~i~~  404 (420)
T COG0499         342 NLAAATGHPSEVMDMSFANQALAQIYLVKNHGKLEPGVYRL-P----K----------ELDEEVARLKLEAMGIELDE  404 (420)
T ss_pred             eeccCCCCcHHHhhhhHHHHHHHHHHHHhcccccCCceeeC-c----H----------HHHHHHHHHHHHHhCceeee
Confidence            0000112222211 122333333333344567777777554 4    2          56678888888888765533

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.86  E-value=1.3e-08  Score=99.24  Aligned_cols=111  Identities=21%  Similarity=0.222  Sum_probs=86.0

Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh
Q 015895          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (398)
Q Consensus       170 IIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~  249 (398)
                      |||+|.||+.+|++| ...|.+|.+||++.... +.        +...+     .....++.+++++||+|++|+|....
T Consensus         1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~-~~--------l~~~g-----~~~~~s~~~~~~~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAV-EE--------AVAAG-----AQAAASPAEAAEGADRVITMLPAGQH   65 (288)
T ss_pred             CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHH-HH--------HHHcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence            689999999999998 57899999999987542 21        11122     22345789999999999999998777


Q ss_pred             hhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec
Q 015895          250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (398)
Q Consensus       250 T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD  297 (398)
                      ++.++.  .+.+..+++|.++||++...+-....+.+.+++..+.  .+|
T Consensus        66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            777773  4567789999999999988887778888888765443  455

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.85  E-value=2.4e-08  Score=103.82  Aligned_cols=126  Identities=21%  Similarity=0.256  Sum_probs=93.0

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCCEEEEc
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH  243 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell---~~aDiV~l~  243 (398)
                      .|||||+|.||+.+|++| ...|.+|.+||++++.. +.+.+        .+....+.....+++++.   +++|+|+++
T Consensus         1 ~IG~IGLG~MG~~mA~nL-~~~G~~V~v~drt~~~~-~~l~~--------~~~~g~~~~~~~s~~e~v~~l~~~dvIil~   70 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNM-ADHGFTVSVYNRTPEKT-DEFLA--------EHAKGKKIVGAYSIEEFVQSLERPRKIMLM   70 (467)
T ss_pred             CEEEEeeHHHHHHHHHHH-HhcCCeEEEEeCCHHHH-HHHHh--------hccCCCCceecCCHHHHHhhcCCCCEEEEE
Confidence            389999999999999998 57899999999988653 22111        100000112235677765   469999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP  303 (398)
                      +|..+.+..++ .+.+..+++|.++||++.+..-|.....+.+.+..+.....=|...++
T Consensus        71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~  129 (467)
T TIGR00873        71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE  129 (467)
T ss_pred             CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence            99878888888 467788999999999999999999999999987766544444555443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.85  E-value=4.3e-08  Score=101.28  Aligned_cols=134  Identities=17%  Similarity=0.244  Sum_probs=92.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+||| +|.||+.+|+.+ +..|.+|.+||+++.... ...       ...+     .....+..+.+++||+|++++
T Consensus         1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~-~~a-------~~~g-----v~~~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGK-EVA-------KELG-----VEYANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHH-HHH-------HHcC-----CeeccCHHHHhccCCEEEEec
Confidence            4799997 999999999998 688999999998764421 111       1112     122346788899999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC--CCCCCCCCCceEEcCCC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI  321 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~--~~~~L~~~~nvilTPHi  321 (398)
                      |. ..+..++ ++....+++++++++++.......+++.+.+..+.      .+...-|.  +..+++....+++||+-
T Consensus        67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCC
Confidence            96 4556665 55667789999999999866555566666554321      12222333  23357777889999974

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.84  E-value=1.2e-07  Score=92.77  Aligned_cols=168  Identities=20%  Similarity=0.231  Sum_probs=108.4

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|.+.+....++ ..+++|+.+.+.   +  ..|++++..+  ..+++. +++...-.  |=|-    |+....+..
T Consensus        58 a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g~  130 (301)
T PRK14194         58 AEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDVD----GFHSENVGG  130 (301)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hccC----ccChhhhhH
Confidence            344687776655443 357888877663   1  4689999865  345543 44444322  3221    222121111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                      ..      .+-+ +....++.-++.++    +                     +.+.++.||+|+|||.| .||+.+|.+
T Consensus       131 l~------~~~~-~~~PcTp~aii~lL----~---------------------~~~i~l~Gk~V~vIG~s~ivG~PmA~~  178 (301)
T PRK14194        131 LS------QGRD-VLTPCTPSGCLRLL----E---------------------DTCGDLTGKHAVVIGRSNIVGKPMAAL  178 (301)
T ss_pred             Hh------cCCC-CCCCCcHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCccHHHHHHH
Confidence            11      1112 24455565555544    1                     12468999999999996 999999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ..-|++|.+|+++.                            .++.++.++||+|+++++..    +++....   +|
T Consensus       179 L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---ik  222 (301)
T PRK14194        179 L-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---LK  222 (301)
T ss_pred             H-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---cc
Confidence            8 57899999997642                            26788899999999999863    4455443   89


Q ss_pred             CCcEEEEcCCCc
Q 015895          264 KEAILVNCSRGP  275 (398)
Q Consensus       264 ~gailIN~aRG~  275 (398)
                      +|+++||++-..
T Consensus       223 ~GaiVIDvgin~  234 (301)
T PRK14194        223 PGAVVIDVGINR  234 (301)
T ss_pred             CCcEEEEecccc
Confidence            999999998644

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.82  E-value=1.9e-08  Score=99.52  Aligned_cols=98  Identities=26%  Similarity=0.288  Sum_probs=70.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      |+||+|||||+|+||+++|+.| +.+|++|+++++..+...+.        ....+     +. ..+..+++++||+|++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~--------a~~~G-----v~-~~s~~ea~~~ADiVvL   65 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKK--------ATEDG-----FK-VGTVEEAIPQADLIMN   65 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHH--------HHHCC-----CE-ECCHHHHHhcCCEEEE
Confidence            5789999999999999999998 68999988766544322221        11112     22 2468889999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v  277 (398)
                      ++|... ....+.++....++++. +|.++.|=-+
T Consensus        66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence            999532 34455566778899886 8888888544

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.81  E-value=7.4e-08  Score=95.52  Aligned_cols=120  Identities=16%  Similarity=0.225  Sum_probs=84.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCC----CccccccCCHHHHhhcCCE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~sl~ell~~aDi  239 (398)
                      ++|||||.|.||..+|..++ ..|++|+.||+++....  ..........+...+..    ........++++.++.||+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            68999999999999999984 78999999999875421  11111111111111110    1112334689999999999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |+-++|-+.+.+.-+-++.-+.++++++| .+++.+ +...++.+.++.
T Consensus        87 ViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~  133 (321)
T PRK07066         87 IQESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH  133 (321)
T ss_pred             EEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC
Confidence            99999999999988888899999999844 444443 456778777764

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.81  E-value=1.2e-07  Score=92.67  Aligned_cols=118  Identities=25%  Similarity=0.251  Sum_probs=78.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCC-------Ccc-ccccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ-------PVT-WKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~-------~~~-~~~~~sl~ell~  235 (398)
                      ++|||||+|.||..+|+.+ ...|++|++||++......  ......-..+.+.+..       ..+ .....+. +.++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~   82 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLA-AAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR   82 (295)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence            5799999999999999998 4789999999998765211  0000000001111100       000 1112334 5679


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhc
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI-N~aRG~~vde~aL~~aL~~  288 (398)
                      .||+|+.|+|..++.+..+-++....++++++|+ |+|.-.   ...+.+.++.
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~  133 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR  133 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC
Confidence            9999999999999988888787778899999987 777654   3445555543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.80  E-value=9.9e-08  Score=92.76  Aligned_cols=94  Identities=14%  Similarity=0.229  Sum_probs=66.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+++|+.| ...|.+|.+||++.......         ...+...   ....+. +.+++||+|++|+|
T Consensus         1 m~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a---------~~~g~~~---~~~~~~-~~~~~aDlVilavp   66 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERA---------IERGLVD---EASTDL-SLLKDCDLVILALP   66 (279)
T ss_pred             CeEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH---------HHCCCcc---cccCCH-hHhcCCCEEEEcCC
Confidence            4799999999999999998 57799999999986542111         1112111   111233 46789999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      . .....++ ++....++++++++|++.-.
T Consensus        67 ~-~~~~~~~-~~l~~~l~~~~ii~d~~Svk   94 (279)
T PRK07417         67 I-GLLLPPS-EQLIPALPPEAIVTDVGSVK   94 (279)
T ss_pred             H-HHHHHHH-HHHHHhCCCCcEEEeCcchH
Confidence            5 3344443 56667789999999998754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.76  E-value=1.5e-07  Score=92.72  Aligned_cols=142  Identities=22%  Similarity=0.223  Sum_probs=87.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ..++|+|||+|.||+.+|+.+ +..|  .+|++||++.... +.        ....+.   ......++++.+++||+|+
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~--------a~~~g~---~~~~~~~~~~~~~~aDvVi   71 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-AR--------ARELGL---GDRVTTSAAEAVKGADLVI   71 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HH--------HHhCCC---CceecCCHHHHhcCCCEEE
Confidence            346899999999999999997 4556  4899999987542 11        111121   1112346778889999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec---cCCCC---CCC-CCCCCCCCc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFEDE---PYM-KPGLSEMKN  314 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD---V~~~E---P~~-~~~L~~~~n  314 (398)
                      +++|. ..+..++ ++....++++.++++++....--.+++.+.+..+ +.  .++   ++..|   |.. ..+|+.-.+
T Consensus        72 iavp~-~~~~~v~-~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~-~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~  146 (307)
T PRK07502         72 LCVPV-GASGAVA-AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEG-VH--FIPGHPLAGTEHSGPDAGFAELFENRW  146 (307)
T ss_pred             ECCCH-HHHHHHH-HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCC-Ce--EEeCCCCCCCcccchhhcCHHHHCCCe
Confidence            99996 3334443 4555678999999999775432223333333221 11  222   22222   111 125666678


Q ss_pred             eEEcCCCCC
Q 015895          315 AIVVPHIAS  323 (398)
Q Consensus       315 vilTPHia~  323 (398)
                      +++||+-++
T Consensus       147 ~~l~~~~~~  155 (307)
T PRK07502        147 CILTPPEGT  155 (307)
T ss_pred             EEEeCCCCC
Confidence            999997543

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.74  E-value=3.9e-07  Score=88.60  Aligned_cols=169  Identities=17%  Similarity=0.214  Sum_probs=110.5

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++++....++ ..+++|+.+.+.     ++.|++++..+  ..+++. +++..+-.  |=|-    |+....  
T Consensus        56 ~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n--  126 (285)
T PRK14189         56 ACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KDVD----GFHVAN--  126 (285)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhh--
Confidence            3455688877665443 357888776664     14689999865  345543 44444332  3221    111111  


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh-HHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA~  182 (398)
                          .|-...+.+ .....++.-++.++    +                     +.+.++.||++.|||.|.+ |+.+|.
T Consensus       127 ----~g~l~~~~~-~~~PcTp~aii~lL----~---------------------~~~i~l~Gk~vvViGrs~iVGkPla~  176 (285)
T PRK14189        127 ----AGALMTGQP-LFRPCTPYGVMKML----E---------------------SIGIPLRGAHAVVIGRSNIVGKPMAM  176 (285)
T ss_pred             ----hhHhhCCCC-CCcCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCccHHHHHH
Confidence                111111222 23455555555443    1                     1235899999999999999 999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ...|++|..+....                            .++.+.+++||+|++++|    +.++|+.   +.+
T Consensus       177 lL-~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIVV~avG----~~~~i~~---~~i  220 (285)
T PRK14189        177 LL-LQAGATVTICHSKT----------------------------RDLAAHTRQADIVVAAVG----KRNVLTA---DMV  220 (285)
T ss_pred             HH-HHCCCEEEEecCCC----------------------------CCHHHHhhhCCEEEEcCC----CcCccCH---HHc
Confidence            98 68999998865321                            368889999999999998    3667877   678


Q ss_pred             CCCcEEEEcCCCc
Q 015895          263 KKEAILVNCSRGP  275 (398)
Q Consensus       263 k~gailIN~aRG~  275 (398)
                      |+|+++||++...
T Consensus       221 k~gavVIDVGin~  233 (285)
T PRK14189        221 KPGATVIDVGMNR  233 (285)
T ss_pred             CCCCEEEEccccc
Confidence            9999999998754

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.74  E-value=3.8e-08  Score=97.00  Aligned_cols=82  Identities=24%  Similarity=0.346  Sum_probs=67.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+++|||||+|.||+.+|++| ...|++|.+|+++..                           .++++++++||+|+++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~   54 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA   54 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence            457899999999999999998 588999999998542                           3677888999999999


Q ss_pred             cCCChhhhhhccHHHHh-cCCCCcEEEEcCCCc
Q 015895          244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~-~mk~gailIN~aRG~  275 (398)
                      +|. ...+.++.. ... .+++++++|++++|-
T Consensus        55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi   85 (308)
T PRK14619         55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGL   85 (308)
T ss_pred             CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCcc
Confidence            997 577777733 222 478999999998854

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.72  E-value=2.1e-07  Score=93.84  Aligned_cols=138  Identities=19%  Similarity=0.128  Sum_probs=86.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|+|||+|.||+++|+.+ +..|.+|.+|++++.......         ..+ .........++++++++||+|++|+|
T Consensus         1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~---------a~~-~~~~~~~~~~~~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR---------ALG-FGVIDELAADLQRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH---------Hhc-CCCCcccccCHHHHhcCCCEEEEeCC
Confidence            4799999999999999998 678888877877654421110         001 01111123467888999999999999


Q ss_pred             CChhhhhhccHHHHh-cCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC----------CCCCCCCc
Q 015895          246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSEMKN  314 (398)
Q Consensus       246 lt~~T~~li~~~~~~-~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~----------~~L~~~~n  314 (398)
                      . ..+..++. +... .+++++++++++.-+.-..+++.+.+..+ .  -.++.   -|...          ..|+....
T Consensus        70 ~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~-~--~~ig~---HPMaG~e~sG~~aa~~~lf~g~~  141 (359)
T PRK06545         70 V-DATAALLA-ELADLELKPGVIVTDVGSVKGAILAEAEALLGDL-I--RFVGG---HPMAGSHKSGVAAARADLFENAP  141 (359)
T ss_pred             H-HHHHHHHH-HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC-C--eEEee---CCcCcCchhhHHHhcHHHHCCCc
Confidence            6 45666663 3333 48899999999886643334443332221 1  12222   23221          24677677


Q ss_pred             eEEcCCCC
Q 015895          315 AIVVPHIA  322 (398)
Q Consensus       315 vilTPHia  322 (398)
                      .++||+-.
T Consensus       142 ~il~~~~~  149 (359)
T PRK06545        142 WVLTPDDH  149 (359)
T ss_pred             EEEecCCC
Confidence            89999743

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.72  E-value=1.6e-07  Score=96.76  Aligned_cols=140  Identities=14%  Similarity=0.119  Sum_probs=91.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-----------ccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-----------VTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~sl~ell  234 (398)
                      ++|||||+|.||..+|..++ . |.+|++||+++... +.+.         .|..+           .+.....+..+.+
T Consensus         7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l~---------~G~~~~~e~~~~~l~~~g~l~~t~~~~~~   74 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LELK---------NGVDVNLETTEEELREARYLKFTSEIEKI   74 (425)
T ss_pred             CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHHH---------CcCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence            78999999999999999974 3 69999999987652 2221         11110           0011122334568


Q ss_pred             hcCCEEEEccCCC------hhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH-hc--CCccEEEe-ccCCCC
Q 015895          235 READVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRVGL-DVFEDE  302 (398)
Q Consensus       235 ~~aDiV~l~~Plt------~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL-~~--g~i~gAal-DV~~~E  302 (398)
                      ++||++++|+|..      ++...++  .+...+.+++|.++|+.|+-.+-..+.+++.+ ++  |...+-.. =+|.+|
T Consensus        75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE  154 (425)
T PRK15182         75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE  154 (425)
T ss_pred             cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence            9999999999965      3345555  34567889999999999998888887754443 33  32111111 146778


Q ss_pred             CCCC----CCCCCCCceEE
Q 015895          303 PYMK----PGLSEMKNAIV  317 (398)
Q Consensus       303 P~~~----~~L~~~~nvil  317 (398)
                      |...    ..+...|+++.
T Consensus       155 ~v~~G~a~~~~~~~~riv~  173 (425)
T PRK15182        155 RINPGDKKHRLTNIKKITS  173 (425)
T ss_pred             cCCCCcccccccCCCeEEE
Confidence            8743    24667777754

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.72  E-value=5.8e-07  Score=88.01  Aligned_cols=169  Identities=18%  Similarity=0.191  Sum_probs=107.2

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++++....++ ..+++|+.+.+..     +.|++++..+  ..+++ ++++..+-.  |=|-    |+..+.+-
T Consensus        56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--KDVD----Gl~~~n~g  128 (296)
T PRK14188         56 QTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--KDVD----GLHVVNAG  128 (296)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCChhhHH
Confidence            3445688776654443 3578888776641     3689999865  34554 344444322  3221    11111111


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChhHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA~  182 (398)
                      ..      ..+.+ +....++.-++.++    +                     +.+.++.||+|+||| .|.||+.+|+
T Consensus       129 ~l------~~~~~-~~~PcTp~ai~~ll----~---------------------~~~i~~~Gk~V~viGrs~~mG~PmA~  176 (296)
T PRK14188        129 RL------ATGET-ALVPCTPLGCMMLL----R---------------------RVHGDLSGLNAVVIGRSNLVGKPMAQ  176 (296)
T ss_pred             HH------hCCCC-CCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEEcCCcchHHHHHH
Confidence            11      11222 24555666555544    1                     123479999999999 9999999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      +| ..-|+.|.+|+.+.                            .++++++++||+|+++++..+    ++.+..   +
T Consensus       177 ~L-~~~g~tVtv~~~rT----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~---l  220 (296)
T PRK14188        177 LL-LAANATVTIAHSRT----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW---I  220 (296)
T ss_pred             HH-HhCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe---e
Confidence            98 57799999995321                            257788999999999999643    444433   8


Q ss_pred             CCCcEEEEcCCCc
Q 015895          263 KKEAILVNCSRGP  275 (398)
Q Consensus       263 k~gailIN~aRG~  275 (398)
                      |+|+++||++--.
T Consensus       221 k~GavVIDvGin~  233 (296)
T PRK14188        221 KPGATVIDVGINR  233 (296)
T ss_pred             cCCCEEEEcCCcc
Confidence            9999999998644

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.70  E-value=3e-08  Score=101.08  Aligned_cols=99  Identities=19%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             CCCCcc-cc-cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC------hhhHHHHHHhhhhhhhhhcCCCCccc
Q 015895          153 WLPNLF-VG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTW  224 (398)
Q Consensus       153 w~~~~~-~g-~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (398)
                      |.+..| .+ ..|+||||+|||+|++|+.-|..| +..|.+|++--|.      .+....         ....     ++
T Consensus        22 ~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~k---------A~~d-----GF   86 (487)
T PRK05225         22 MDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRK---------ATEN-----GF   86 (487)
T ss_pred             cchhhccchhHHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHH---------HHhc-----CC
Confidence            665555 22 569999999999999999666665 5666666522111      111100         0111     22


Q ss_pred             cccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE
Q 015895          225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV  269 (398)
Q Consensus       225 ~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI  269 (398)
                       ...+++|++++||+|++.+|++ . ++.+.++.+..||+|+.|.
T Consensus        87 -~v~~~~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225         87 -KVGTYEELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             -ccCCHHHHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence             2367999999999999999987 3 7778899999999998874

>PLN02712 arogenate dehydrogenase

Probab=98.70  E-value=8.7e-08  Score=103.64  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=77.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV  240 (398)
                      .-+.++|||||+|.||+.+|+.+ +.+|++|++||++......          ...+     .....++++++ ..||+|
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~A----------~~~G-----v~~~~d~~e~~~~~aDvV  112 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLAA----------RSLG-----VSFFLDPHDLCERHPDVI  112 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH----------HHcC-----CEEeCCHHHHhhcCCCEE
Confidence            34557899999999999999998 6889999999997433211          1112     22245778865 569999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      ++|+|. ..+..++.+-.+..+++|++++|++.-...--+++.+.+.
T Consensus       113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~  158 (667)
T PLN02712        113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP  158 (667)
T ss_pred             EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence            999995 5778888665456799999999998654322234444443

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.68  E-value=4e-07  Score=88.84  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCCC--------ccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQP--------VTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~sl~ell  234 (398)
                      ++|+|||+|.||..+|..+ ...|.+|++||+++.... ...+.......   ..+...        .......++++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVF-AVSGFQTTLVDIKQEQLE-SAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHH-HhCCCcEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            5799999999999999998 467999999999876522 11110000000   000000        0011235788899


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhcCCccEEEeccC
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gail-IN~aRG~~vde~aL~~aL~~g~i~gAalDV~  299 (398)
                      ++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|...+   ..+.+.++. .-...++..|
T Consensus        80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            9999999999987776666556667778999877 78888554   446555543 2234566655

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.67  E-value=5.4e-07  Score=90.94  Aligned_cols=123  Identities=18%  Similarity=0.233  Sum_probs=84.1

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      +.-.||+|||+ |.||+++|+.+.+.++.+|++||+...                         ...++++.+++||+|+
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi   56 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLI   56 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence            34578999999 999999999984346999999998421                         0136778899999999


Q ss_pred             EccCCChhhhhhccH--HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC---CCCCCCCCceE
Q 015895          242 LHPVLDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAI  316 (398)
Q Consensus       242 l~~Plt~~T~~li~~--~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~---~~~L~~~~nvi  316 (398)
                      +|+|. ..+..++.+  .....+|+|++++|++.-+-    ..++++....     .++-..-|..   .+.+++..+++
T Consensus        57 lavPv-~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~i  126 (370)
T PRK08818         57 FSAPI-RHTAALIEEYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMV  126 (370)
T ss_pred             EeCCH-HHHHHHHHHHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEE
Confidence            99996 455565532  11224899999999988542    2222222211     1344445542   23577777899


Q ss_pred             EcCC
Q 015895          317 VVPH  320 (398)
Q Consensus       317 lTPH  320 (398)
                      +||.
T Consensus       127 ltp~  130 (370)
T PRK08818        127 VCEA  130 (370)
T ss_pred             EeCC
Confidence            9996

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.67  E-value=4.5e-07  Score=88.26  Aligned_cols=137  Identities=23%  Similarity=0.246  Sum_probs=87.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEE--EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHhhcCCEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS  241 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-l~ell~~aDiV~  241 (398)
                      -++|+|+|+|.||+.+|+.+ +.-|..|  +++|++.......            .......+...+ ..+.+..||+|+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence            36899999999999999997 6777765  5555554332211            011122221123 367778899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC----CCCCCCCCceEE
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----KPGLSEMKNAIV  317 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~----~~~L~~~~nvil  317 (398)
                      +++|- ..|..++ ++....+|+|++++|++.-.----+++.+.+.++     . .+..--|..    ..+++....+|+
T Consensus        70 vavPi-~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~-----~-~~vg~HPM~G~~~~~~lf~~~~~vl  141 (279)
T COG0287          70 VAVPI-EATEEVL-KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGD-----V-RFVGGHPMFGPEADAGLFENAVVVL  141 (279)
T ss_pred             EeccH-HHHHHHH-HHhcccCCCCCEEEecccccHHHHHHHHHhccCC-----C-eeEecCCCCCCcccccccCCCEEEE
Confidence            99996 4566665 4455589999999999885533334443333221     1 333445542    236888888999


Q ss_pred             cCCCC
Q 015895          318 VPHIA  322 (398)
Q Consensus       318 TPHia  322 (398)
                      ||.-.
T Consensus       142 tp~~~  146 (279)
T COG0287         142 TPSEG  146 (279)
T ss_pred             cCCCC
Confidence            99643

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.67  E-value=1.4e-07  Score=76.45  Aligned_cols=92  Identities=26%  Similarity=0.377  Sum_probs=62.5

Q ss_pred             eEEEEecChhHHHHHHHHHhcCC---cEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ||||||+|+||+.+++.+ ...|   .+|. +++|++... +++.+.+       +   ... ...+..|+++.||+|++
T Consensus         1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~-------~---~~~-~~~~~~~~~~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEY-------G---VQA-TADDNEEAAQEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence            699999999999999998 5788   8999 558887643 2221211       1   111 11268899999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      ++|. .....++ ++. ....++.++|++.-|
T Consensus        68 av~p-~~~~~v~-~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   68 AVKP-QQLPEVL-SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -S-G-GGHHHHH-HHH-HHHHTTSEEEEESTT
T ss_pred             EECH-HHHHHHH-HHH-hhccCCCEEEEeCCC
Confidence            9994 2334433 334 667889999998643

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.66  E-value=1.4e-06  Score=85.01  Aligned_cols=152  Identities=14%  Similarity=0.095  Sum_probs=92.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCCC---------ccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP---------VTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~sl~ell  234 (398)
                      ++|+|||.|.||..+|..++ ..|.+|+.||++.....+  ...+.......+.+...         .......++++.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            57999999999999999984 679999999998754211  11000000000000000         0112246788889


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n  314 (398)
                      +.||+|+.++|...+.+.-+-++....++++++|+..+.+-  ....+.+.++... ...++--       .+|.+..+.
T Consensus        83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~l  152 (287)
T PRK08293         83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPE-KFLALHF-------ANEIWKNNT  152 (287)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCe
Confidence            99999999999765555555566667789999885443332  3355666655322 2233322       234556688


Q ss_pred             eEEcCCCCCCcHHHH
Q 015895          315 AIVVPHIASASKWTR  329 (398)
Q Consensus       315 vilTPHia~~T~ea~  329 (398)
                      |.++||-. .+.++.
T Consensus       153 vevv~~~~-t~~~~~  166 (287)
T PRK08293        153 AEIMGHPG-TDPEVF  166 (287)
T ss_pred             EEEeCCCC-CCHHHH
Confidence            88888644 334443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.66  E-value=9.8e-07  Score=89.44  Aligned_cols=121  Identities=13%  Similarity=0.149  Sum_probs=83.4

Q ss_pred             CchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       120 ~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      ....++-.+-.++..+|+..+      +.    |...    .....++|+||| +|.||+.+|+.+ +..|..|.+||+.
T Consensus        67 ~~~~~~~i~~~i~~~s~~~q~------~~----~~~~----~~~~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~  131 (374)
T PRK11199         67 PPDLIEDVLRRVMRESYSSEN------DK----GFKT----LNPDLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQD  131 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHhH------Hh----cccc----cCcccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCC
Confidence            445566677777777764432      11    2211    223558999999 999999999998 6789999999974


Q ss_pred             hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (398)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd  278 (398)
                      ..                           .+.++++++||+|++|+|.. .+..++ ++ +..+++|+++++++.-...-
T Consensus       132 ~~---------------------------~~~~~~~~~aDlVilavP~~-~~~~~~-~~-l~~l~~~~iv~Dv~SvK~~~  181 (374)
T PRK11199        132 DW---------------------------DRAEDILADAGMVIVSVPIH-LTEEVI-AR-LPPLPEDCILVDLTSVKNAP  181 (374)
T ss_pred             cc---------------------------hhHHHHHhcCCEEEEeCcHH-HHHHHH-HH-HhCCCCCcEEEECCCccHHH
Confidence            21                           24567789999999999964 455655 33 44499999999998854333


Q ss_pred             HHHHHHH
Q 015895          279 EVALVEH  285 (398)
Q Consensus       279 e~aL~~a  285 (398)
                      ..++.+.
T Consensus       182 ~~~~~~~  188 (374)
T PRK11199        182 LQAMLAA  188 (374)
T ss_pred             HHHHHHh
Confidence            3344443

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.66  E-value=6.8e-07  Score=86.88  Aligned_cols=170  Identities=19%  Similarity=0.301  Sum_probs=109.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCc
Q 015895           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (398)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~  102 (398)
                      +..++.|++++....++ ..+++|+.+.+.   +  +.|+|++..+  ..+++. +++..+-.  |=|-    |+....+
T Consensus        55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  127 (284)
T PRK14179         55 RSALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KDVD----GFHPMNT  127 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cccc----ccCHhhH
Confidence            33455688887665444 357787776664   1  4689999865  344443 33443322  3221    1111111


Q ss_pred             hHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 015895          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (398)
Q Consensus       103 ~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA  181 (398)
                            |-...+.++ ....++.-++.++    +                     +.+.++.||+++|||. |.+|+.+|
T Consensus       128 ------g~l~~~~~~-~~PcTp~avi~lL----~---------------------~~~i~l~Gk~v~vIG~S~ivG~Pla  175 (284)
T PRK14179        128 ------GHLWSGRPV-MIPCTPAGIMEMF----R---------------------EYNVELEGKHAVVIGRSNIVGKPMA  175 (284)
T ss_pred             ------HHHhCCCCC-CcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcCcHHHH
Confidence                  111122232 4566666665544    1                     1345899999999999 99999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       182 ~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      .+| ...|+.|.+|...                            ..++.+.+++||+|+++++.    .+++....   
T Consensus       176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~----~~~v~~~~---  219 (284)
T PRK14179        176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGR----GHFVTKEF---  219 (284)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCc----cccCCHHH---
Confidence            998 5789999988321                            13688899999999999986    33455443   


Q ss_pred             CCCCcEEEEcCCCc
Q 015895          262 MKKEAILVNCSRGP  275 (398)
Q Consensus       262 mk~gailIN~aRG~  275 (398)
                      +|+|+++||++--.
T Consensus       220 ik~GavVIDvgin~  233 (284)
T PRK14179        220 VKEGAVVIDVGMNR  233 (284)
T ss_pred             ccCCcEEEEeccee
Confidence            89999999998644

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.62  E-value=6.8e-07  Score=85.92  Aligned_cols=103  Identities=30%  Similarity=0.377  Sum_probs=73.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc----EEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++|||||+|+||+.+|+.| ..-|.    +|++| |++.... +.+        ...+     .....+..+++++||+|
T Consensus         1 ~kI~~IG~G~mG~a~a~~L-~~~g~~~~~~i~v~~~r~~~~~-~~~--------~~~g-----~~~~~~~~e~~~~aDvV   65 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGL-VASGVVPPSRISTADDSNPARR-DVF--------QSLG-----VKTAASNTEVVKSSDVI   65 (266)
T ss_pred             CeEEEECCcHHHHHHHHHH-HHCCCCCcceEEEEeCCCHHHH-HHH--------HHcC-----CEEeCChHHHHhcCCEE
Confidence            4799999999999999998 45566    88999 8776442 221        1112     22345778889999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      ++++| ......++. +....++++.++|++.-|  +..+.+.+.+.
T Consensus        66 il~v~-~~~~~~vl~-~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         66 ILAVK-PQVVKDVLT-ELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             EEEEC-cHHHHHHHH-HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            99997 456777763 455667899999988766  35566665554

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.61  E-value=6.3e-07  Score=92.05  Aligned_cols=109  Identities=23%  Similarity=0.227  Sum_probs=75.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH------------
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------  233 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el------------  233 (398)
                      ++|+|||+|.||..+|..| ...|.+|++||+++.... .+.         .+..+.   ....++++            
T Consensus         4 ~kI~VIGlG~~G~~~A~~L-a~~G~~V~~~D~~~~~v~-~l~---------~g~~~~---~e~~l~~~l~~~~~~g~l~~   69 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAF-ASRQKQVIGVDINQHAVD-TIN---------RGEIHI---VEPDLDMVVKTAVEGGYLRA   69 (415)
T ss_pred             cEEEEECcchhhHHHHHHH-HhCCCEEEEEeCCHHHHH-HHH---------CCCCCc---CCCCHHHHHHHHhhcCceee
Confidence            6899999999999999998 477999999999876432 211         111110   01223333            


Q ss_pred             ---hhcCCEEEEccCCC------hhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       234 ---l~~aDiV~l~~Plt------~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                         ++.||+|++|+|..      ++...+.  -+.....+++|+++|+.|.-.+--.+.+...+.+
T Consensus        70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~  135 (415)
T PRK11064         70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE  135 (415)
T ss_pred             ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence               34799999999964      2223332  2456777999999999999777777777766664

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.58  E-value=5.8e-07  Score=87.31  Aligned_cols=107  Identities=18%  Similarity=0.243  Sum_probs=74.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+++|||||+|+||+.+|+.|. ..|    .+|++|||+.....+.+...+       +     .....+..+++++||+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDv   68 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANI   68 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCE
Confidence            3468999999999999999984 445    689999987644333321111       1     2223577888899999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      |++++|. .+....+ .+....++++.++|++.-|-  ..+.+.+.+.
T Consensus        69 Vilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~  112 (279)
T PRK07679         69 LFLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ  112 (279)
T ss_pred             EEEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence            9999994 4455555 44455678899999986553  4556666554

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.58  E-value=1.9e-07  Score=94.57  Aligned_cols=102  Identities=19%  Similarity=0.368  Sum_probs=74.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-CccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.++++.|+|.|.+|+.+++.+ +.+|++|.++|++.... +.....+       +.. ........++.+.++++|+|
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~-------g~~v~~~~~~~~~l~~~l~~aDvV  234 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEF-------GGRIHTRYSNAYEIEDAVKRADLL  234 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhc-------CceeEeccCCHHHHHHHHccCCEE
Confidence            36788899999999999999997 79999999999986542 2211111       100 00011113467888999999


Q ss_pred             EEccCCC-hhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          241 SLHPVLD-KTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       241 ~l~~Plt-~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +.+++.+ ..+..+++++.++.||+++++||++
T Consensus       235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             EEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            9998653 2356789999999999999999986

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.55  E-value=2.9e-07  Score=81.93  Aligned_cols=95  Identities=32%  Similarity=0.370  Sum_probs=63.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      |+||+|.|||||.-|..-|..| +..|.+|++-.+..++..+.        .++.|     ++ ..+++|+.++||+|.+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~--------A~~~G-----f~-v~~~~eAv~~aDvV~~   66 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEK--------AKADG-----FE-VMSVAEAVKKADVVML   66 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHH--------HHHTT------E-CCEHHHHHHC-SEEEE
T ss_pred             cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHH--------HHHCC-----Ce-eccHHHHHhhCCEEEE
Confidence            6899999999999999999998 78999999887765532111        11222     32 3689999999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      .+|. +.-..+..++....||+|..|+ .+.|
T Consensus        67 L~PD-~~q~~vy~~~I~p~l~~G~~L~-fahG   96 (165)
T PF07991_consen   67 LLPD-EVQPEVYEEEIAPNLKPGATLV-FAHG   96 (165)
T ss_dssp             -S-H-HHHHHHHHHHHHHHS-TT-EEE-ESSS
T ss_pred             eCCh-HHHHHHHHHHHHhhCCCCCEEE-eCCc
Confidence            9994 2234555677888999998765 4455

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.55  E-value=3.8e-06  Score=81.79  Aligned_cols=168  Identities=16%  Similarity=0.264  Sum_probs=108.8

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+..     +.|++++..+  ..+++. +++..+-.  |=|-    |+....+..
T Consensus        57 a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g~  129 (286)
T PRK14175         57 AEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDVD----GFHPINIGK  129 (286)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCCccchHh
Confidence            345688876665443 3577777766641     4689999865  335543 44444332  3221    221111111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (398)
                            ...+.+ .....++.-++.++    .                     +.+.++.||++.|||.|. +|+.+|..
T Consensus       130 ------l~~~~~-~~~PcTp~ai~~ll----~---------------------~~~i~l~Gk~vvVIGrs~~VG~pla~l  177 (286)
T PRK14175        130 ------LYIDEQ-TFVPCTPLGIMEIL----K---------------------HADIDLEGKNAVVIGRSHIVGQPVSKL  177 (286)
T ss_pred             ------HhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCchhHHHHHHH
Confidence                  111222 23455555555444    1                     123479999999999998 99999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ...|++|..++++.                            .++.+.+++||+|+.+++.    .++|.++.   +|
T Consensus       178 L-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~---vk  221 (286)
T PRK14175        178 L-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV---VK  221 (286)
T ss_pred             H-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---cC
Confidence            8 68999999887532                            2577889999999999985    45677764   68


Q ss_pred             CCcEEEEcCCCc
Q 015895          264 KEAILVNCSRGP  275 (398)
Q Consensus       264 ~gailIN~aRG~  275 (398)
                      +|+++||++-..
T Consensus       222 ~gavVIDvGi~~  233 (286)
T PRK14175        222 EGAVIIDVGNTP  233 (286)
T ss_pred             CCcEEEEcCCCc
Confidence            999999998754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.54  E-value=3.2e-06  Score=82.63  Aligned_cols=128  Identities=22%  Similarity=0.280  Sum_probs=80.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---hhcCCCC--------ccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQP--------VTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~sl~ell  234 (398)
                      ++|+|||.|.||..+|..+ ...|.+|++||++..... ...+.....+   ...+...        .......++++ +
T Consensus         5 ~kI~vIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~   81 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVC-ALAGYDVLLNDVSADRLE-AGLATINGNLARQVAKGKISEEARAAALARISTATDLED-L   81 (292)
T ss_pred             CEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-h
Confidence            5799999999999999998 467999999999875421 1111000000   0011100        00112345654 7


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gAalDV~~  300 (398)
                      ++||+|+.++|...+.+..+-++....++++++++ |+|.-.+   .++.+.+... -...++-.+.
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~-~r~~g~h~~~  144 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRP-ERFIGIHFMN  144 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCc-ccEEEeeccC
Confidence            89999999999877766555567777889999998 6655443   4677776432 2234455454

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.54  E-value=3.9e-07  Score=88.43  Aligned_cols=110  Identities=17%  Similarity=0.178  Sum_probs=76.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~-fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      .++|||||+|+||+.+++.+.+. .++++. +||+++... +.+.+.+       +.    ...+.+++++++++|+|++
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVVE   73 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEEE
Confidence            47899999999999999998433 578876 778876542 2211111       11    1124689999999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      |+|...  ..-+.   ...++.|.-++..++|.+.+.++|.++.+++..
T Consensus        74 ~tp~~~--h~e~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~  117 (271)
T PRK13302         74 AAPASV--LRAIV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG  117 (271)
T ss_pred             CCCcHH--HHHHH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence            999532  22222   333466777777889988889999998887654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.52  E-value=4.7e-06  Score=81.00  Aligned_cols=119  Identities=22%  Similarity=0.271  Sum_probs=76.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--HhhhhhhhhhcCCCCc--------cccccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPV--------TWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~sl~ell~  235 (398)
                      ++|+|||.|.||..+|..+ ...|.+|++||+++.......  .+..-..+.+.+....        ......+.++ ++
T Consensus         4 ~kI~VIG~G~mG~~ia~~l-a~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~   81 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVC-AVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK   81 (282)
T ss_pred             cEEEEEccCHHHHHHHHHH-HHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence            4799999999999999998 467999999999876532100  0000000111111000        1112345554 78


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +||+|+.++|-..+.+.-+-++..+.++++++++..+.|  +....|.+.+..
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            999999999977776655556666778999999555554  455578887753

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.52  E-value=6.7e-07  Score=82.95  Aligned_cols=110  Identities=20%  Similarity=0.309  Sum_probs=76.6

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCC
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EAD  238 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aD  238 (398)
                      +.+++||+++|+|+|+||+.+|++| ..+|++|+++|++.... +.+.+.+       +     ... .+.++++. +||
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~~-v~~~~l~~~~~D   87 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----ATV-VAPEEIYSVDAD   87 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CEE-EcchhhccccCC
Confidence            3579999999999999999999998 68999999999986532 2211111       1     111 13355554 799


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +++.|..     .++|+++.+..|+. .+++.-+-+.+-| ..-.+.|++..+
T Consensus        88 v~vp~A~-----~~~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi  133 (200)
T cd01075          88 VFAPCAL-----GGVINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGI  133 (200)
T ss_pred             EEEeccc-----ccccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCC
Confidence            9986665     35788888888874 4777777777665 344555555544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.50  E-value=7.6e-07  Score=86.44  Aligned_cols=104  Identities=20%  Similarity=0.266  Sum_probs=74.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|||||+|+||+++|+.|. .-|    .+|++|||+.... +.+.+.       .+     .....+..+++++||+|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~~-------~g-----~~~~~~~~e~~~~aDiIi   68 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASDK-------YG-----ITITTNNNEVANSADILI   68 (272)
T ss_pred             CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHHh-------cC-----cEEeCCcHHHHhhCCEEE
Confidence            57999999999999999884 444    3799999987542 221111       12     222356778899999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      +++|. .....++ ++.-..++++.++|++.-|  ++.+.|.+.+.
T Consensus        69 LavkP-~~~~~vl-~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         69 LSIKP-DLYSSVI-NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             EEeCh-HHHHHHH-HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            99993 5666666 3444556889999999988  45667777664

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.49  E-value=1.6e-05  Score=83.23  Aligned_cols=227  Identities=20%  Similarity=0.167  Sum_probs=122.9

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHHHHh--------cCCCcEEE-ecCCccccHHHHHHhhccCCceEEEeeccc
Q 015895           29 WINLLIEQDCRVEICTQK--KTILSVEDIIALI--------GDKCDGVI-GQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (398)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~eel~~~~--------~~~~d~vi-~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~   97 (398)
                      ..+.|.+.|+++.+-...  ....+.++..+.=        -+++|.|+ +..+   +++.++.++. |--+++...-..
T Consensus        21 ~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV~~P---~~~e~~~l~~-g~tli~~l~p~~   96 (511)
T TIGR00561        21 TVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKVNAP---SDAEIAELPA-GKALVSFIWPAQ   96 (511)
T ss_pred             HHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEeCCC---CHHHHHhcCC-CCEEEEEcCccC
Confidence            467777778877664431  2234455544310        01356555 3322   3445666655 224445444444


Q ss_pred             cccCchHhhhcCceEEecCCCC--C--------chHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895           98 NNVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (398)
Q Consensus        98 d~iD~~~~~~~gI~V~n~p~~~--~--------~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt  167 (398)
                      |.=-++++.+++|.+..--..-  +        .++|+.+      -.|-+..+.+.+  |++..-+ ....| .+.+.+
T Consensus        97 n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA------Gy~Avi~Aa~~l--gr~~~g~-~taag-~vp~ak  166 (511)
T TIGR00561        97 NPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA------GYRAIIEAAHEF--GRFFTGQ-ITAAG-KVPPAK  166 (511)
T ss_pred             CHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH------HHHHHHHHHHHh--hhhcCCc-eecCC-CCCCCE
Confidence            4334667788888887732111  1        1233322      222222221111  1100000 00112 355789


Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh-----hhcCCCCccccccCC----------HHH
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS----------MDE  232 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s----------l~e  232 (398)
                      +.|+|.|.+|...++.+ +.+|++|.++|++.... +. .+.++...     ...+....++....+          +.+
T Consensus       167 VlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e~-a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e  243 (511)
T TIGR00561       167 VLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-EQ-VQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA  243 (511)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence            99999999999999986 89999999999987642 21 12122111     001111112221112          445


Q ss_pred             HhhcCCEEEEcc--CCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          233 VLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       233 ll~~aDiV~l~~--Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .++++|+|+.++  |.. ....++.++.++.||+|+++||+|-
T Consensus       244 ~~~~~DIVI~TalipG~-~aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       244 QAKEVDIIITTALIPGK-PAPKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HhCCCCEEEECcccCCC-CCCeeehHHHHhhCCCCCEEEEeee
Confidence            678899998776  432 2346889999999999999999865

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.48  E-value=2.8e-06  Score=83.03  Aligned_cols=130  Identities=17%  Similarity=0.228  Sum_probs=83.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~  235 (398)
                      ++|||||.|.||..+|..++ ..|.+|+.||+++.....  ......-..+.+.+...        .......++ +.++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~   83 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA   83 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence            37999999999999999985 679999999999875321  11111101111122110        011123567 4579


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~m-k~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~  300 (398)
                      .||+|+-++|-+.+.+.-+-.+.-+.+ ++++++++.+.+-.+  .++..+++.. =...++.-|.
T Consensus        84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~~-~r~~g~hf~~  146 (286)
T PRK07819         84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKRP-GRVLGLHFFN  146 (286)
T ss_pred             CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCC-ccEEEEecCC
Confidence            999999999999998887766555555 899999998877554  4444444432 1235566665

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.47  E-value=3.6e-06  Score=86.27  Aligned_cols=117  Identities=18%  Similarity=0.220  Sum_probs=75.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh--------hhhhhhcCCCCcc-ccccCCHHHHhhc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVT-WKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~sl~ell~~  236 (398)
                      ++|||||+|.||..+|..| ...|.+|++||++.... +.+....        ...+.+. . ..+ .....++++++++
T Consensus         1 mkI~vIGlG~~G~~lA~~L-a~~G~~V~~~d~~~~~v-~~l~~g~~~~~e~~l~~~~~~~-~-~~g~l~~~~~~~~~~~~   76 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALL-ADLGHEVTGVDIDQEKV-DKLNKGKSPIYEPGLDELLAKA-L-AAGRLRATTDYEDAIRD   76 (411)
T ss_pred             CEEEEECCCchhHHHHHHH-HhcCCeEEEEECCHHHH-HHhhcCCCCCCCCCHHHHHHHh-h-hcCCeEEECCHHHHHhh
Confidence            4799999999999999998 47899999999987542 1111100        0000000 0 001 2223578888999


Q ss_pred             CCEEEEccCCChh------hhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895          237 ADVISLHPVLDKT------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (398)
Q Consensus       237 aDiV~l~~Plt~~------T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL  286 (398)
                      ||+|++|+|....      ...+.  -++....+++|.++|++|.-.+-..+.+...+
T Consensus        77 advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~  134 (411)
T TIGR03026        77 ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI  134 (411)
T ss_pred             CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence            9999999996432      12222  14456678999999999976665666665433

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.46  E-value=5.8e-07  Score=86.72  Aligned_cols=95  Identities=22%  Similarity=0.419  Sum_probs=78.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      -+.||.+.|.|||.+|+..|..| ++||++|++....|-..+....+              ++ .+..++|+.++.|+++
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMe--------------G~-~V~tm~ea~~e~difV  274 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAME--------------GY-EVTTLEEAIREVDIFV  274 (434)
T ss_pred             eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhh--------------cc-EeeeHHHhhhcCCEEE
Confidence            47999999999999999999998 89999999998777554443222              22 2468999999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      .+.    ..+.+|..++|.+||+++++-|++.-.+
T Consensus       275 TtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  275 TTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             Ecc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence            766    4688999999999999999999988553

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.45  E-value=2.4e-06  Score=82.85  Aligned_cols=101  Identities=17%  Similarity=0.289  Sum_probs=66.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|||||+|.||+.+|+.| ...|  .+|++||+++......         ...+..    ....+.+++. +||+|++|
T Consensus         1 m~I~iIG~G~mG~sla~~l-~~~g~~~~v~~~d~~~~~~~~~---------~~~g~~----~~~~~~~~~~-~aD~Vila   65 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLAL-KEKGLISKVYGYDHNELHLKKA---------LELGLV----DEIVSFEELK-KCDVIFLA   65 (275)
T ss_pred             CEEEEEccCHHHHHHHHHH-HhcCCCCEEEEEcCCHHHHHHH---------HHCCCC----cccCCHHHHh-cCCEEEEe
Confidence            3799999999999999998 4445  5899999987542111         111211    1123567765 59999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +|. ..+..++ .+... +++++++++++.-    ...+.+.+..
T Consensus        66 vp~-~~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         66 IPV-DAIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             CcH-HHHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            995 3445554 34555 8999999998653    3345555543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.44  E-value=1.8e-06  Score=75.74  Aligned_cols=114  Identities=18%  Similarity=0.234  Sum_probs=76.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++.+++++|+|.|.||+.+++.+ ...| .+|.++|++.... +.+.+.+       +.... .....+.+++++++|+|
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~-------~~~~~-~~~~~~~~~~~~~~Dvv   85 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERF-------GELGI-AIAYLDLEELLAEADLI   85 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHH-------hhccc-ceeecchhhccccCCEE
Confidence            46788999999999999999998 4664 7899999986542 2211111       10000 01234677778999999


Q ss_pred             EEccCCChh-hh-hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          241 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       241 ~l~~Plt~~-T~-~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      ++++|.... .. ..+...   .++++.+++|++..+.. + .|.+.+++..
T Consensus        86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g  132 (155)
T cd01065          86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALG  132 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence            999997653 12 223332   36899999999886543 3 7777777654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.42  E-value=2e-06  Score=85.42  Aligned_cols=115  Identities=20%  Similarity=0.233  Sum_probs=75.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCC-CCccccccCCHHHHhhcCCEEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      .++|+|||+|.||..+|.+| ...|.+|.+|+|++... +..... ...... .+. .+.......+++++++.||+|++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L-~~~G~~V~~~~r~~~~~-~~i~~~-~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~   80 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLA-ASKGVPVRLWARRPEFA-AALAAE-RENREYLPGVALPAELYPTADPEEALAGADFAVV   80 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHh-CcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence            35899999999999999998 46799999999976532 211110 000000 010 00002234578888899999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC-chhc--HHHHHHHHhc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ  288 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG-~~vd--e~aL~~aL~~  288 (398)
                      ++|.. .+     ++.++.++++.++|+++.| ..-+  .+.+.+.+..
T Consensus        81 ~v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         81 AVPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             ECchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            99964 22     5566889999999999997 3322  4456666644

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.42  E-value=4.4e-06  Score=87.93  Aligned_cols=131  Identities=21%  Similarity=0.257  Sum_probs=86.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~  235 (398)
                      ++|||||+|.||+.||..++ ..|.+|+.||+++....+.  .....-..+.+.|...        .......++++ ++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~   85 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LA   85 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hC
Confidence            57999999999999999984 6799999999998653211  1110000111112100        01122356766 56


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhcCCccEEEeccCCCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gail-IN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~E  302 (398)
                      +||+|+-++|-+.+.+..+-.+.-..++++++| +|+|.-++   .++.++++.- =...++..|.+-
T Consensus        86 ~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~Pa  149 (507)
T PRK08268         86 DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNPV  149 (507)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCCc
Confidence            999999999999998887766666667899999 59988665   3576666542 133566666533

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.39  E-value=1.2e-06  Score=79.00  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             cccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~I-G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .++.||++.|||.|.+ |+.+|+.| ...|++|.+.+++.                            .++.+.+.+||+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi   90 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI   90 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence            3699999999999996 88899998 68899999888753                            246678999999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd  278 (398)
                      |+.+++..    ++|.++.   ++++.++||+|...-+|
T Consensus        91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080          91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence            99999852    3688775   57899999999988777

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.39  E-value=1.9e-05  Score=77.86  Aligned_cols=146  Identities=21%  Similarity=0.176  Sum_probs=82.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~  235 (398)
                      ++|+|||+|.||..+|..+ ...|.+|++||+++......  ..+..-..+...+...        .......++.++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~l-a~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVF-ARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             cEEEEECccHHHHHHHHHH-HHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            4799999999999999998 46799999999987532110  0000000011111100        00123457888899


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCce
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNA  315 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nv  315 (398)
                      .||+|+.++|...+.+..+-++.-+..++..++. .+... .....+.+.+....  ....|-+-+ |.     .-.+=+
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts~-~~~~~la~~~~~~~--~~~~~hp~~-p~-----~~~~lv  151 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAILA-SSTSA-LLASAFTEHLAGRE--RCLVAHPIN-PP-----YLIPVV  151 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCCC-CCHHHHHHhcCCcc--cEEEEecCC-Cc-----ccCceE
Confidence            9999999999765554444333333345555554 33333 34566777775422  244444432 21     111335


Q ss_pred             EEcCCCC
Q 015895          316 IVVPHIA  322 (398)
Q Consensus       316 ilTPHia  322 (398)
                      .++||-+
T Consensus       152 eiv~~~~  158 (308)
T PRK06129        152 EVVPAPW  158 (308)
T ss_pred             EEeCCCC
Confidence            6777644

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.39  E-value=6.7e-06  Score=86.37  Aligned_cols=131  Identities=15%  Similarity=0.098  Sum_probs=81.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhh---hcCCCCcc-ccccCCHHHHhhcCCE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLK---ANGEQPVT-WKRASSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~---~~~~~~~~-~~~~~sl~ell~~aDi  239 (398)
                      ++|||||+|.||+.+|.+++ ..|.+|++||+++.....  ...+.......   .......+ .....++++++++||+
T Consensus         5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~   83 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW   83 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence            58999999999999999984 679999999998765311  10000000000   00000001 2234678899999999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~  301 (398)
                      |+.++|-..+.+..+-++.-+.++++++| .++..++ ....+.+.+...  ....+|-+.+
T Consensus        84 Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~~--~r~~~~hP~n  141 (495)
T PRK07531         84 IQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTHP--ERLFVAHPYN  141 (495)
T ss_pred             EEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCCc--ceEEEEecCC
Confidence            99999987766665545555667888755 4444443 355777776542  2345554443

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.36  E-value=2.3e-06  Score=84.35  Aligned_cols=105  Identities=16%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||+|.||..+|.+| ...|.+|.+||+++... +...+. +........  .+.+.....+++++++.||+|+++
T Consensus         2 mkI~iiG~G~mG~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVL-ARNGHDVTLWARDPEQA-AEINAD-RENPRYLPGIKLPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHc-CcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence            4799999999999999998 46789999999976432 111110 000000000  000122345788889999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +|. ..+..++ .+....++++.++|+++.|-
T Consensus        79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv  108 (325)
T PRK00094         79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGI  108 (325)
T ss_pred             CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence            996 4666666 34556678999999998654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.35  E-value=4.2e-06  Score=85.22  Aligned_cols=141  Identities=13%  Similarity=0.187  Sum_probs=86.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh----hhhhhhhcC-CCCccccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANG-EQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++|+|||+|.||..+|..++  .|++|++||++.... +...+.    +...+++.. ..........+..++++.||+|
T Consensus         1 mkI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv-~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v   77 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA--QNHEVVALDILPSRV-AMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYV   77 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHH-HHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence            47999999999999997663  489999999987652 221110    000000000 0011121223467778999999


Q ss_pred             EEccCCChh----------hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC----
Q 015895          241 SLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----  306 (398)
Q Consensus       241 ~l~~Plt~~----------T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~----  306 (398)
                      ++|+|...+          .+..+ ++. ..+++|.++|+.|+-.+--.+.+.+.+.+..+      +|.+|.+..    
T Consensus        78 ii~Vpt~~~~k~~~~dl~~v~~v~-~~i-~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~  149 (388)
T PRK15057         78 IIATPTDYDPKTNYFNTSSVESVI-KDV-VEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKAL  149 (388)
T ss_pred             EEeCCCCCccCCCCcChHHHHHHH-HHH-HhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCccc
Confidence            999996521          12222 233 34799999999999888888888887765322      246665432    


Q ss_pred             CCCCCCCceEE
Q 015895          307 PGLSEMKNAIV  317 (398)
Q Consensus       307 ~~L~~~~nvil  317 (398)
                      ..++..|+|++
T Consensus       150 ~d~~~p~rvv~  160 (388)
T PRK15057        150 YDNLHPSRIVI  160 (388)
T ss_pred             ccccCCCEEEE
Confidence            23555556544

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.35  E-value=1.6e-05  Score=77.34  Aligned_cols=168  Identities=18%  Similarity=0.260  Sum_probs=109.4

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+..     +.|++++..+  ..+++. +++..+-.  |=|-    |+....+  
T Consensus        56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~--  126 (285)
T PRK14191         56 CERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--KDVD----GFHPLNI--  126 (285)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccChhhH--
Confidence            445688877665544 3577777766542     3689999865  345543 34444322  3221    1111111  


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                          |-...+.+ .....++.-++.++    +                     +.+.++.||++.|||-| .+|+.+|..
T Consensus       127 ----g~l~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVvGrs~~VG~Pla~l  176 (285)
T PRK14191        127 ----GKLCSQLD-GFVPATPMGVMRLL----K---------------------HYHIEIKGKDVVIIGASNIVGKPLAML  176 (285)
T ss_pred             ----HHHhcCCC-CCCCCcHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCchhHHHHHHH
Confidence                11122222 24566676666654    1                     12358999999999999 999999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ...|+.|..++.+.                            .++.+.+++||+|+++++.    .+++..+.+   |
T Consensus       177 L-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~v---k  220 (285)
T PRK14191        177 M-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVGK----PDLIKASMV---K  220 (285)
T ss_pred             H-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecCC----CCcCCHHHc---C
Confidence            8 67899998875322                            2467889999999999964    567777766   9


Q ss_pred             CCcEEEEcCCCc
Q 015895          264 KEAILVNCSRGP  275 (398)
Q Consensus       264 ~gailIN~aRG~  275 (398)
                      +|+++||++-..
T Consensus       221 ~GavVIDvGi~~  232 (285)
T PRK14191        221 KGAVVVDIGINR  232 (285)
T ss_pred             CCcEEEEeeccc
Confidence            999999998644

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.35  E-value=8.7e-06  Score=85.60  Aligned_cols=131  Identities=20%  Similarity=0.280  Sum_probs=86.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH---HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell  234 (398)
                      ++|||||.|.||+.||..++ ..|++|+.||+++......   ..+.+.. +...|...        .......++++ +
T Consensus         6 ~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-l   82 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNS-LVTKGKLTAEECERTLKRLIPVTDLHA-L   82 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence            57999999999999999984 6799999999987653210   0011110 11112110        01122456766 4


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP  303 (398)
                      ++||+|+-++|-..+.+..+-.+.-..++++++|. |+|.-++   ..+.++++. .-...++.-|.+-|
T Consensus        83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap  148 (503)
T TIGR02279        83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP  148 (503)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc
Confidence            69999999999888888777666667788888876 7766443   467777753 33567777666443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.34  E-value=5.7e-06  Score=90.83  Aligned_cols=138  Identities=17%  Similarity=0.143  Sum_probs=89.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|||||+|.||+.+|+.+ +..|  .+|++||++.......         ...+..   .....++++++++||+|++|
T Consensus         4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~a---------~~~g~~---~~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLELA---------VSLGVI---DRGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHHH---------HHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence            6899999999999999997 5666  5899999987542111         111211   01234678889999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC----------CCCCCCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK  313 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~----------~~~L~~~~  313 (398)
                      +|.. ....++ ++....++++.++++++.....-.+++.+.+...     ...+..+-|..          ++.|+.-.
T Consensus        71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~-----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~  143 (735)
T PRK14806         71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGEL-----PAGFVPGHPIAGSEKSGVHAANADLFRNH  143 (735)
T ss_pred             CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhcccc-----CCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence            9953 445544 3344567889999999885533344555554431     12223333321          23577878


Q ss_pred             ceEEcCCCCC
Q 015895          314 NAIVVPHIAS  323 (398)
Q Consensus       314 nvilTPHia~  323 (398)
                      ++++||+-..
T Consensus       144 ~~~~~~~~~~  153 (735)
T PRK14806        144 KVILTPLAET  153 (735)
T ss_pred             eEEEECCCCC
Confidence            8999997543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.34  E-value=1.4e-05  Score=78.74  Aligned_cols=119  Identities=13%  Similarity=0.147  Sum_probs=71.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh---hhhhhhcCCC---CccccccCCHHHHhhcCCE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY---GQFLKANGEQ---PVTWKRASSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~sl~ell~~aDi  239 (398)
                      ++|+|||+|.||..+|..+ ...|.+|++||++.... +...+..   .......+..   ........++++.+++||+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l-~~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl   82 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALF-ARKGLQVVLIDVMEGAL-ERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL   82 (311)
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence            5799999999999999998 46799999999977542 1111100   0000000000   0001123567888899999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |++++|...+...-+-++.-..++++++++..+.|-  ....+.+.+..
T Consensus        83 Vi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~--~~~~l~~~~~~  129 (311)
T PRK06130         83 VIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL--PITAIAQAVTR  129 (311)
T ss_pred             EEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC--CHHHHHhhcCC
Confidence            999999765433333333334567777765444442  34577777653

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.31  E-value=3.7e-05  Score=74.80  Aligned_cols=168  Identities=17%  Similarity=0.205  Sum_probs=105.9

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++.+....++ ..+++|+.+.+..     +.|+|++..+  ..+++ ++++..+-.  |=|-    |+....+.
T Consensus        57 ~a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KDVD----Gl~~~n~g  129 (285)
T PRK10792         57 ACEEVGFVSRSYDLPE-TTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD--KDVD----GFHPYNVG  129 (285)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccC----ccChhhHh
Confidence            3445688776655443 3577887766542     4689999765  34443 344444322  3221    11111111


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~  182 (398)
                      ..      ..+.+ .....++.-++.++    +                     +.+.++.||++.|||.|. +|+.+|.
T Consensus       130 ~l------~~~~~-~~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrs~iVG~Pla~  177 (285)
T PRK10792        130 RL------AQRIP-LLRPCTPRGIMTLL----E---------------------RYGIDTYGLNAVVVGASNIVGRPMSL  177 (285)
T ss_pred             HH------hCCCC-CCCCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCcccHHHHHH
Confidence            11      11112 23445555554443    1                     123579999999999999 9999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ...|+.|..++.+.                            .++.+.+++||+|+.+++-    .+++..   +.+
T Consensus       178 lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvi~avG~----p~~v~~---~~v  221 (285)
T PRK10792        178 EL-LLAGCTVTVCHRFT----------------------------KNLRHHVRNADLLVVAVGK----PGFIPG---EWI  221 (285)
T ss_pred             HH-HHCCCeEEEEECCC----------------------------CCHHHHHhhCCEEEEcCCC----cccccH---HHc
Confidence            98 68899999886432                            3688889999999999964    335655   556


Q ss_pred             CCCcEEEEcCCC
Q 015895          263 KKEAILVNCSRG  274 (398)
Q Consensus       263 k~gailIN~aRG  274 (398)
                      |+|+++||++--
T Consensus       222 k~gavVIDvGin  233 (285)
T PRK10792        222 KPGAIVIDVGIN  233 (285)
T ss_pred             CCCcEEEEcccc
Confidence            899999999853

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.31  E-value=3e-05  Score=75.51  Aligned_cols=167  Identities=17%  Similarity=0.238  Sum_probs=107.6

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+..     +.|+|++..+  ..+++ +++++.+-.  |=|-    |+-.+.   
T Consensus        63 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N---  132 (287)
T PRK14176         63 CERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KDAD----GFHPYN---  132 (287)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----ccChhh---
Confidence            445688877665544 3577877766541     4689999865  34443 344444322  3221    111111   


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (398)
                         .|-...+.+ .....+++-++.++    +                     +.+.++.||++.|||.|. +|+.+|..
T Consensus       133 ---~g~l~~g~~-~~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrs~iVGkPla~l  183 (287)
T PRK14176        133 ---MGKLMIGDE-GLVPCTPHGVIRAL----E---------------------EYGVDIEGKNAVIVGHSNVVGKPMAAM  183 (287)
T ss_pred             ---hhhHhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCcccHHHHHHH
Confidence               111122222 24555666655544    1                     123579999999999999 99999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ...|+.|..++...                            .++.+..++||+|++++.-    .++|..+   .+|
T Consensus       184 L-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvv~AvG~----p~~i~~~---~vk  227 (287)
T PRK14176        184 L-LNRNATVSVCHVFT----------------------------DDLKKYTLDADILVVATGV----KHLIKAD---MVK  227 (287)
T ss_pred             H-HHCCCEEEEEeccC----------------------------CCHHHHHhhCCEEEEccCC----ccccCHH---HcC
Confidence            8 68899998876421                            3678889999999998864    3567655   678


Q ss_pred             CCcEEEEcCCC
Q 015895          264 KEAILVNCSRG  274 (398)
Q Consensus       264 ~gailIN~aRG  274 (398)
                      +|+++||++--
T Consensus       228 ~gavVIDvGin  238 (287)
T PRK14176        228 EGAVIFDVGIT  238 (287)
T ss_pred             CCcEEEEeccc
Confidence            99999999863

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.30  E-value=2.4e-05  Score=75.95  Aligned_cols=168  Identities=14%  Similarity=0.174  Sum_probs=110.2

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|.+.+....++ ..+++|+.+.+..     ..|++++..+  ..+++ .+++..+-.  |=|-    |+..+.+..
T Consensus        51 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--KDVD----Gl~~~n~g~  123 (279)
T PRK14178         51 CERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--KDVD----GFHPLNLGR  123 (279)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhHHH
Confidence            445688876665444 3578888776641     4689999865  34554 344444332  3221    222122111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                            ...+.+ .....++.-++.++    +                     +.+.+++|+++.|+|.+ .+|+.+|..
T Consensus       124 ------l~~~~~-~~~PcTp~av~~ll----~---------------------~~~i~l~Gk~V~ViGrs~~vGrpla~l  171 (279)
T PRK14178        124 ------LVSGLP-GFAPCTPNGIMTLL----H---------------------EYKISIAGKRAVVVGRSIDVGRPMAAL  171 (279)
T ss_pred             ------HhCCCC-CCCCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCccccHHHHHH
Confidence                  112222 24555666555544    1                     12358999999999999 999999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ..+|+.|..+..+.                            .++.+.+++||+|+.+++.    .+++.++.+   |
T Consensus       172 L-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk----~~lv~~~~v---k  215 (279)
T PRK14178        172 L-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGK----AGFITPDMV---K  215 (279)
T ss_pred             H-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCc----ccccCHHHc---C
Confidence            7 68999998876432                            2578889999999999974    267888775   9


Q ss_pred             CCcEEEEcCCCc
Q 015895          264 KEAILVNCSRGP  275 (398)
Q Consensus       264 ~gailIN~aRG~  275 (398)
                      +|+++||++-..
T Consensus       216 ~GavVIDVgi~~  227 (279)
T PRK14178        216 PGATVIDVGINQ  227 (279)
T ss_pred             CCcEEEEeeccc
Confidence            999999998643

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.30  E-value=1.7e-06  Score=75.18  Aligned_cols=104  Identities=22%  Similarity=0.282  Sum_probs=72.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      +++|+++.|||.|.+|+.+++.| ...|++ |.+++|+... .+.+.+.+       +..........++.+.+.++|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~r-a~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPER-AEALAEEF-------GGVNIEAIPLEDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHH-HHHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHH-HHHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence            69999999999999999999998 678986 9999998754 22322221       11112223345677889999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCc-EEEEcCCCchh
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVI  277 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~ga-ilIN~aRG~~v  277 (398)
                      +.++|...   ..+.++.+...++.. +++|.|...-|
T Consensus        80 I~aT~~~~---~~i~~~~~~~~~~~~~~v~Dla~Pr~i  114 (135)
T PF01488_consen   80 INATPSGM---PIITEEMLKKASKKLRLVIDLAVPRDI  114 (135)
T ss_dssp             EE-SSTTS---TSSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred             EEecCCCC---cccCHHHHHHHHhhhhceeccccCCCC
Confidence            99999642   377888888776644 88888765433

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.30  E-value=4.1e-06  Score=82.21  Aligned_cols=98  Identities=15%  Similarity=0.184  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (398)
Q Consensus       177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~  256 (398)
                      |+.+|++| ...|..|++||++++...+...+    .+...|     .....+..+++++||+|++|+|..+.++.++ .
T Consensus        32 GspMArnL-lkAGheV~V~Drnrsa~e~e~~e----~LaeaG-----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~  100 (341)
T TIGR01724        32 GSRMAIEF-AMAGHDVVLAEPNREFMSDDLWK----KVEDAG-----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R  100 (341)
T ss_pred             HHHHHHHH-HHCCCEEEEEeCChhhhhhhhhH----HHHHCC-----CeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence            89999998 57899999999876532111000    122223     2335678999999999999999888888887 5


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      ..++.+++|+++||+++.++   +.++..|+.
T Consensus       101 GLaa~L~~GaIVID~STIsP---~t~~~~~e~  129 (341)
T TIGR01724       101 TIIEHVPENAVICNTCTVSP---VVLYYSLEK  129 (341)
T ss_pred             HHHhcCCCCCEEEECCCCCH---HHHHHHHHH
Confidence            68999999999999988654   444444443

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.30  E-value=9.2e-06  Score=79.37  Aligned_cols=130  Identities=18%  Similarity=0.287  Sum_probs=80.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhh--hh-hhhhhcCCCC--------ccccccCCHHH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA--YG-QFLKANGEQP--------VTWKRASSMDE  232 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~--~~-~~~~~~~~~~--------~~~~~~~sl~e  232 (398)
                      ++|+|||.|.||+.+|..+ ...|++|+.||+++.....  .....  ++ ......+...        .......++ +
T Consensus         4 ~~I~ViGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVF-ARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence            5899999999999999998 4779999999998764211  00000  00 0000011100        001112345 5


Q ss_pred             HhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (398)
Q Consensus       233 ll~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~  300 (398)
                      .+++||+|+.++|...+.+.-+-++.-..++++++|++.+.|-  ....+.+.+... -...++.-|.
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~-~r~ig~hf~~  146 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERK-DRFIGMHWFN  146 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCc-ccEEEEecCC
Confidence            6789999999999766555555455556789999999887774  456677777532 2334444443

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.27  E-value=9.1e-06  Score=79.01  Aligned_cols=106  Identities=16%  Similarity=0.235  Sum_probs=72.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|+|||+|+||+.+|+.+. ..|    .+|++|+++.....+.....       .+    ......+..+++++||+|+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~-------~~----~~~~~~~~~e~~~~aDvVi   69 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDK-------YP----TVELADNEAEIFTKCDHSF   69 (277)
T ss_pred             CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHH-------cC----CeEEeCCHHHHHhhCCEEE
Confidence            47999999999999999984 455    68999998654332221111       00    0112356788899999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      +++|. .....++ ++....++++..+|.+.-|  +..+.|.+.+.
T Consensus        70 lavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         70 ICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            99993 3444444 3333456788899999887  56667777664

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.26  E-value=1e-05  Score=75.99  Aligned_cols=116  Identities=23%  Similarity=0.298  Sum_probs=89.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el---l~~aDiV~l  242 (398)
                      +++|.||||+||..+++|+ ..-|.+|++||.++....+.         ...+     .....+++|+   +..--+|-+
T Consensus         1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~---------~~~g-----a~~a~sl~el~~~L~~pr~vWl   65 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEEL---------KDEG-----ATGAASLDELVAKLSAPRIVWL   65 (300)
T ss_pred             CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHH---------HhcC-----CccccCHHHHHHhcCCCcEEEE
Confidence            5799999999999999998 78999999999998654321         1222     2234567766   456688999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~  299 (398)
                      .+|...-|..+| ++.-..|.+|-++|+-+-..--|...-.+.|+...|  .-+||=
T Consensus        66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~G  119 (300)
T COG1023          66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVG  119 (300)
T ss_pred             EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEecc
Confidence            999887777776 567788999999999998888888778888887666  456653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.25  E-value=1.3e-05  Score=73.11  Aligned_cols=146  Identities=20%  Similarity=0.221  Sum_probs=84.8

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCC--------ccccccCCHHHHhhc
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLRE  236 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~~  236 (398)
                      +|+|||.|.||+.+|..++ ..|++|..||+++....  ....+..-......+...        .......+++++. .
T Consensus         1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            6999999999999999985 67999999999886421  122221111111111110        1122346788887 9


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceE
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  316 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvi  316 (398)
                      ||+|+=++|-+-+.+.-+-++.-+.++++++|...+.+=  .-..|.+++.. .-.-.++=-|.  |+...||.+   |+
T Consensus        79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl--~i~~la~~~~~-p~R~ig~Hf~~--P~~~~~lVE---vv  150 (180)
T PF02737_consen   79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSL--SISELAAALSR-PERFIGMHFFN--PPHLMPLVE---VV  150 (180)
T ss_dssp             ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS---HHHHHTTSST-GGGEEEEEE-S--STTT--EEE---EE
T ss_pred             hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCC--CHHHHHhccCc-CceEEEEeccc--ccccCceEE---Ee
Confidence            999999999888888777788888889999998776653  44666666653 22345555553  332234443   56


Q ss_pred             EcCCCC
Q 015895          317 VVPHIA  322 (398)
Q Consensus       317 lTPHia  322 (398)
                      -.|+.+
T Consensus       151 ~~~~T~  156 (180)
T PF02737_consen  151 PGPKTS  156 (180)
T ss_dssp             E-TTS-
T ss_pred             CCCCCC
Confidence            666543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=7e-05  Score=72.95  Aligned_cols=169  Identities=17%  Similarity=0.256  Sum_probs=109.5

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++++....++ ..+++|+.+.+.   +  +.|++++..+  ..+++. +++..+-.  |=|-    |+....+.
T Consensus        56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g  128 (284)
T PRK14190         56 AAEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--KDVD----GFHPINVG  128 (284)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccCHhhHH
Confidence            3445688887665443 357777776654   1  4689999764  344443 34444322  3221    22111111


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~  182 (398)
                      .      ...+.++ ....++.-++.++    +                     +.+.++.||++.|||- ..+|+.+|.
T Consensus       129 ~------l~~~~~~-~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~iVG~Pla~  176 (284)
T PRK14190        129 R------MMLGQDT-FLPCTPHGILELL----K---------------------EYNIDISGKHVVVVGRSNIVGKPVGQ  176 (284)
T ss_pred             H------HhcCCCC-CCCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCccHHHHHH
Confidence            1      1122232 4556666666544    1                     1345899999999998 567999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ...++.|..++...                            .++.+.+++||+|+.+++.    .++|..+.+   
T Consensus       177 lL-~~~~atVt~chs~t----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~i---  220 (284)
T PRK14190        177 LL-LNENATVTYCHSKT----------------------------KNLAELTKQADILIVAVGK----PKLITADMV---  220 (284)
T ss_pred             HH-HHCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHHHc---
Confidence            98 57899998875421                            3678889999999999964    557888777   


Q ss_pred             CCCcEEEEcCCCc
Q 015895          263 KKEAILVNCSRGP  275 (398)
Q Consensus       263 k~gailIN~aRG~  275 (398)
                      |+|+++||++.-.
T Consensus       221 k~gavVIDvGi~~  233 (284)
T PRK14190        221 KEGAVVIDVGVNR  233 (284)
T ss_pred             CCCCEEEEeeccc
Confidence            8999999998754

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.18  E-value=7.8e-06  Score=78.42  Aligned_cols=105  Identities=16%  Similarity=0.232  Sum_probs=71.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ++|||||+|+||+.+++.+. ..|.   .+.+|+++.... +.+.+.       .+    +.....+..+++++||+|++
T Consensus         1 m~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~-------~~----~~~~~~~~~~~~~~aDvVil   67 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAER-------FP----KVRIAKDNQAVVDRSDVVFL   67 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHH-------cC----CceEeCCHHHHHHhCCEEEE
Confidence            37999999999999999984 4453   357888876542 221111       00    12234578888999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      ++| ......++..  + .++++.++|.++-|  +..+.|.+.+..+
T Consensus        68 av~-p~~~~~vl~~--l-~~~~~~~vis~~ag--~~~~~l~~~~~~~  108 (258)
T PRK06476         68 AVR-PQIAEEVLRA--L-RFRPGQTVISVIAA--TDRAALLEWIGHD  108 (258)
T ss_pred             EeC-HHHHHHHHHH--h-ccCCCCEEEEECCC--CCHHHHHHHhCCC
Confidence            999 3455665542  3 35788999998743  6777788777653

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.17  E-value=1.7e-06  Score=80.83  Aligned_cols=134  Identities=14%  Similarity=0.204  Sum_probs=91.5

Q ss_pred             chHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHH-hcCCcEEEE-EcCC
Q 015895          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLY  198 (398)
Q Consensus       121 ~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la-~~fG~~V~~-~d~~  198 (398)
                      ...++|.+..++...|++..            |.         ..++++|||+|.+|+.+++.+. ...|+++++ +|+.
T Consensus        61 ~~~~gy~v~~l~~~~~~~l~------------~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         61 KRGVGYNVEELLEFIEKILG------------LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             CCCCCeeHHHHHHHHHHHhC------------CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            33456999999999998761            22         2357999999999999998531 357888775 5765


Q ss_pred             hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEEccCCChh---hhhhccHHHHhcCCCCcEEEEcCC
Q 015895          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV~l~~Plt~~---T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +... ..          ...  ...+....++++++++  .|.|++++|.+..   ...+.......-+....+.+|+.+
T Consensus       120 ~~~~-~~----------~i~--g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~  186 (213)
T PRK05472        120 PEKI-GT----------KIG--GIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPE  186 (213)
T ss_pred             hhhc-CC----------EeC--CeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCC
Confidence            4321 00          000  1112223467888765  9999999998664   223333344555777789999999


Q ss_pred             CchhcHHHHHHHHhc
Q 015895          274 GPVIDEVALVEHLKQ  288 (398)
Q Consensus       274 G~~vde~aL~~aL~~  288 (398)
                      |.+|+.++|..+|..
T Consensus       187 ~~~v~~~~l~~~l~~  201 (213)
T PRK05472        187 DVIVRNVDLTVELQT  201 (213)
T ss_pred             CCEEEEechHHHHHH
Confidence            999999999999874

>PRK07680 late competence protein ComER; Validated

Probab=98.16  E-value=2e-05  Score=76.29  Aligned_cols=105  Identities=19%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|||||+|+||+.+|+.| ...|    .+|.+|||+.... +.+.+.+           .+.....+..+++..||+|+
T Consensus         1 m~I~iIG~G~mG~ala~~L-~~~g~~~~~~v~v~~r~~~~~-~~~~~~~-----------~g~~~~~~~~~~~~~aDiVi   67 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAF-LESGAVKPSQLTITNRTPAKA-YHIKERY-----------PGIHVAKTIEEVISQSDLIF   67 (273)
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCCCcceEEEECCCHHHH-HHHHHHc-----------CCeEEECCHHHHHHhCCEEE
Confidence            3699999999999999997 4555    3799999987542 2211110           01222357788889999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      +++|. .....++ ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        68 lav~p-~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         68 ICVKP-LDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            99983 4455655 3444567888999999855  36666766654

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.16  E-value=1.5e-05  Score=82.78  Aligned_cols=117  Identities=15%  Similarity=0.217  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEEccCCChhhhh
Q 015895          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH  252 (398)
Q Consensus       176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l~~Plt~~T~~  252 (398)
                      ||+.+|++| ...|.+|.+||+++.... .+.+.       .+. ..+.....+++|+++.   +|+|++++|..+.+..
T Consensus         1 MG~~mA~nL-~~~G~~V~v~nrt~~~~~-~l~~~-------~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~   70 (459)
T PRK09287          1 MGKNLALNI-ASHGYTVAVYNRTPEKTD-EFLAE-------EGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA   70 (459)
T ss_pred             CcHHHHHHH-HhCCCeEEEECCCHHHHH-HHHHh-------hCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence            799999998 578999999999976532 22110       010 0123345789998874   8999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP  303 (398)
                      ++ .+.+..+.+|.++||++....-|...+.+.+++..+.....=|...++
T Consensus        71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            98 468899999999999999999999999999998877766666676654

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.15  E-value=1.4e-05  Score=71.15  Aligned_cols=104  Identities=21%  Similarity=0.325  Sum_probs=64.9

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhcCCEEEEcc
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      +|+|+|.|+.|.++|..+ ...|.+|..|++.... .+...+. ..........  +.......+++++++.||+|++++
T Consensus         1 KI~ViGaG~~G~AlA~~l-a~~g~~V~l~~~~~~~-~~~i~~~-~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav   77 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALL-ADNGHEVTLWGRDEEQ-IEEINET-RQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV   77 (157)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHCTEEEEEETSCHHH-HHHHHHH-TSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred             CEEEECcCHHHHHHHHHH-HHcCCEEEEEeccHHH-HHHHHHh-CCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence            589999999999999998 5788999999998743 2221110 0000000000  111223468999999999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      |.. ..+.++ ++....++++..+|+++.|=
T Consensus        78 Ps~-~~~~~~-~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   78 PSQ-AHREVL-EQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             -GG-GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred             cHH-HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence            953 334443 55666678999999998763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.13  E-value=0.00024  Score=74.69  Aligned_cols=227  Identities=18%  Similarity=0.185  Sum_probs=122.8

Q ss_pred             HHHHHHhCCCeEEEecC--CCCCCCHHHHHHH---hc-----CCCcEEE-ecCCccccHHHHHHhhccCCceEEEeeccc
Q 015895           29 WINLLIEQDCRVEICTQ--KKTILSVEDIIAL---IG-----DKCDGVI-GQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (398)
Q Consensus        29 ~~~~l~~~~~~~~~~~~--~~~~~~~eel~~~---~~-----~~~d~vi-~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~   97 (398)
                      ..+.|.+.|+++.+-..  .....+.+|..+.   +.     +++|.|+ +..   .+.+.++.++. |-.+++......
T Consensus        22 ~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV~~---P~~~e~~~l~~-g~~li~~l~p~~   97 (509)
T PRK09424         22 TVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKVNA---PSDDEIALLRE-GATLVSFIWPAQ   97 (509)
T ss_pred             HHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEeCC---CCHHHHHhcCC-CCEEEEEeCccc
Confidence            56777777888766543  2233456665531   10     1356665 332   23455667765 334555555544


Q ss_pred             cccCchHhhhcCceEEe---cCCC-C------CchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcc-cccccCCC
Q 015895           98 NNVDVNAANKYGIAVGN---TPGV-L------TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-VGNLLKGQ  166 (398)
Q Consensus        98 d~iD~~~~~~~gI~V~n---~p~~-~------~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~-~g~~l~gk  166 (398)
                      |.=-++++.++||.+..   .|.. .      =.++|+.+=      .|-+..+.+.+  +++   .+... ......+.
T Consensus        98 ~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~~---~~g~~taaG~~pg~  166 (509)
T PRK09424         98 NPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GRF---FTGQITAAGKVPPA  166 (509)
T ss_pred             CHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--ccc---CCCceeccCCcCCC
Confidence            54456777889988877   2210 0      122233222      22222221111  111   00000 00135699


Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---hhcC--CCCccccccC--C--------HH
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANG--EQPVTWKRAS--S--------MD  231 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~--s--------l~  231 (398)
                      +|.|+|.|.+|...++.+ +.+|++|+++|+++... + ..+.++...   +...  ....++....  +        +.
T Consensus       167 kVlViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rl-e-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~  243 (509)
T PRK09424        167 KVLVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVA-E-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA  243 (509)
T ss_pred             EEEEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence            999999999999999985 89999999999987653 2 122222210   0000  0000000000  1        12


Q ss_pred             HHhhcCCEEEEccCCChh-hhhhccHHHHhcCCCCcEEEEcCC
Q 015895          232 EVLREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       232 ell~~aDiV~l~~Plt~~-T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +.+..+|+|+.+...... ...++.++.++.||+|+++++++=
T Consensus       244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        244 EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            223579999988754221 335667899999999999999974

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.09  E-value=7e-06  Score=70.72  Aligned_cols=93  Identities=23%  Similarity=0.316  Sum_probs=53.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ...+|||||.|++|..+++.| +..|..|..+ +++.... +....          .  .+.....+++|++..+|++++
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa-~~a~~----------~--~~~~~~~~~~~~~~~aDlv~i   74 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASA-ERAAA----------F--IGAGAILDLEEILRDADLVFI   74 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HH-HHHHC--------------TT-----TTGGGCC-SEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCcccc-ccccc----------c--cccccccccccccccCCEEEE
Confidence            446899999999999999998 6889998776 4544221 11000          0  111223567889999999999


Q ss_pred             ccCCChhhhhhccHHHHhc--CCCCcEEEEcC
Q 015895          243 HPVLDKTTYHLINKERLAT--MKKEAILVNCS  272 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~--mk~gailIN~a  272 (398)
                      ++|.+ .-..+ -++.-..  .++|.+++-||
T Consensus        75 avpDd-aI~~v-a~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   75 AVPDD-AIAEV-AEQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             -S-CC-HHHHH-HHHHHCC--S-TT-EEEES-
T ss_pred             EechH-HHHHH-HHHHHHhccCCCCcEEEECC
Confidence            99964 33333 2333333  68999999985

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.09  E-value=1.7e-05  Score=76.77  Aligned_cols=107  Identities=20%  Similarity=0.370  Sum_probs=68.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|||||+|.||+.+++.+.+. .+++ +.++|+++... +.+.+.       .+     ...+.++++++.++|+|++|
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~-------~~-----~~~~~~~~ell~~~DvVvi~   68 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASK-------TG-----AKACLSIDELVEDVDLVVEC   68 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHh-------cC-----CeeECCHHHHhcCCCEEEEc
Confidence            4799999999999999987432 2566 45689886542 221111       11     12346899999999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde---~aL~~aL~~g~  290 (398)
                      +|.  +...   +-....++.|.-++..+.|.+.|.   +.|.++.+++.
T Consensus        69 a~~--~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g  113 (265)
T PRK13304         69 ASV--NAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN  113 (265)
T ss_pred             CCh--HHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence            984  2221   112233455666677777777664   35666666654

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=0.00016  Score=70.34  Aligned_cols=168  Identities=18%  Similarity=0.225  Sum_probs=106.6

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++.+....++ ..+++++.+.+..     +.|++++..+  ..+++ ++++..+-.  |=|-    |+..+.+  
T Consensus        56 a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~--  126 (281)
T PRK14183         56 CDRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--KDVD----GFHPYNV--  126 (281)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--hccc----ccChhhh--
Confidence            344688776655443 3577777765531     4689999865  34554 344444332  3221    1111111  


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                          |-...+.+ .....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|..
T Consensus       127 ----g~l~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~~VG~Pla~l  176 (281)
T PRK14183        127 ----GRLVTGLD-GFVPCTPLGVMELL----E---------------------EYEIDVKGKDVCVVGASNIVGKPMAAL  176 (281)
T ss_pred             ----hHHhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCcchHHHHHH
Confidence                11111222 24555666555544    1                     12358999999999999 899999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ..-|+.|..+..+.                            .++.+..++||+|+++++-    .+++..+.   .|
T Consensus       177 L-~~~~AtVti~hs~T----------------------------~~l~~~~~~ADIvV~AvGk----p~~i~~~~---vk  220 (281)
T PRK14183        177 L-LNANATVDICHIFT----------------------------KDLKAHTKKADIVIVGVGK----PNLITEDM---VK  220 (281)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCCEEEEecCc----ccccCHHH---cC
Confidence            8 57789998764321                            3678889999999999974    55676655   47


Q ss_pred             CCcEEEEcCCCc
Q 015895          264 KEAILVNCSRGP  275 (398)
Q Consensus       264 ~gailIN~aRG~  275 (398)
                      +|+++||++--.
T Consensus       221 ~gavvIDvGin~  232 (281)
T PRK14183        221 EGAIVIDIGINR  232 (281)
T ss_pred             CCcEEEEeeccc
Confidence            999999998543

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=0.00019  Score=70.01  Aligned_cols=169  Identities=21%  Similarity=0.255  Sum_probs=108.3

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+.   +  +.|++++..+  ..+++. +++..+-.  |=|-    |+..+.+..
T Consensus        54 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g~  126 (287)
T PRK14173         54 AKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--KDVD----GFHPLNVGR  126 (287)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----ccChhhhHH
Confidence            445688887665443 357787776654   1  3789999865  344443 34444322  3221    221111111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                      .      ..+.+ .....++.-++.++-                         +.+.++.||++.|||-+ .+|+.+|..
T Consensus       127 l------~~~~~-~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla~l  174 (287)
T PRK14173        127 L------WMGGE-ALEPCTPAGVVRLLK-------------------------HYGIPLAGKEVVVVGRSNIVGKPLAAL  174 (287)
T ss_pred             H------hcCCC-CCCCCCHHHHHHHHH-------------------------HcCCCCCCCEEEEECCCCccHHHHHHH
Confidence            1      11122 245556666655541                         13458999999999985 579999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ...++.|..+....                            .++.+..++||+|+++++-    .+++..+.+   |
T Consensus       175 L-~~~~aTVtichs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~v---k  218 (287)
T PRK14173        175 L-LREDATVTLAHSKT----------------------------QDLPAVTRRADVLVVAVGR----PHLITPEMV---R  218 (287)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHHc---C
Confidence            8 57889998775421                            3688889999999999974    467777655   8


Q ss_pred             CCcEEEEcCCCch
Q 015895          264 KEAILVNCSRGPV  276 (398)
Q Consensus       264 ~gailIN~aRG~~  276 (398)
                      +|+++||++.-.+
T Consensus       219 ~GavVIDVGin~~  231 (287)
T PRK14173        219 PGAVVVDVGINRV  231 (287)
T ss_pred             CCCEEEEccCccc
Confidence            9999999987553

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.04  E-value=3.2e-05  Score=71.75  Aligned_cols=94  Identities=20%  Similarity=0.218  Sum_probs=66.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++++|+|.|+||+.+|+++ ...|.+|++-.++.++..+...+.       .+..    -...+.++..+.||+|++.+|
T Consensus         2 ~~~~i~GtGniG~alA~~~-a~ag~eV~igs~r~~~~~~a~a~~-------l~~~----i~~~~~~dA~~~aDVVvLAVP   69 (211)
T COG2085           2 MIIAIIGTGNIGSALALRL-AKAGHEVIIGSSRGPKALAAAAAA-------LGPL----ITGGSNEDAAALADVVVLAVP   69 (211)
T ss_pred             cEEEEeccChHHHHHHHHH-HhCCCeEEEecCCChhHHHHHHHh-------hccc----cccCChHHHHhcCCEEEEecc
Confidence            5899999999999999998 578999998877665543332111       1111    123578899999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      .. ...++ .++...... |.++|++.-.
T Consensus        70 ~~-a~~~v-~~~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          70 FE-AIPDV-LAELRDALG-GKIVIDATNP   95 (211)
T ss_pred             HH-HHHhH-HHHHHHHhC-CeEEEecCCC
Confidence            73 33333 255555555 8899998764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.04  E-value=1.5e-05  Score=71.75  Aligned_cols=111  Identities=20%  Similarity=0.267  Sum_probs=69.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCc------------ccccc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV------------TWKRA  227 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~  227 (398)
                      ..+...++.|+|.|++|+..++.+ +++|++|..+|.++... ++..........-. .....            .....
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERL-RQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE   93 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHH-HHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHH-HhhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence            357778999999999999999996 89999999999887532 11111110000000 00000            01112


Q ss_pred             CCHHHHhhcCCEEEEc-cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       228 ~sl~ell~~aDiV~l~-~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ..+.+.++.+|+|+.+ +--.+..-.+|.++.++.||+|++++|+|=
T Consensus        94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred             HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence            2478889999998853 323456778999999999999999999853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=0.00027  Score=68.78  Aligned_cols=168  Identities=17%  Similarity=0.274  Sum_probs=108.4

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+..     +.|++++..+  ..+++ ++++..+-.  |=|-    |+....+..
T Consensus        55 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g~  127 (282)
T PRK14169         55 AEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDVD----GFSPVSVGR  127 (282)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhhHH
Confidence            445688887665544 3577777766641     3689999765  34443 444444332  3221    221111111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                            ...+.+ +....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|..
T Consensus       128 ------l~~~~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~l  175 (282)
T PRK14169        128 ------LWANEP-TVVASTPYGIMALL----D---------------------AYDIDVAGKRVVIVGRSNIVGRPLAGL  175 (282)
T ss_pred             ------HhcCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHHH
Confidence                  112223 24566676666655    1                     12458999999999995 579999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ...|+.|..+....                            .++.+..++||+|+++++-    .++|..+.   .|
T Consensus       176 L-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~---vk  219 (282)
T PRK14169        176 M-VNHDATVTIAHSKT----------------------------RNLKQLTKEADILVVAVGV----PHFIGADA---VK  219 (282)
T ss_pred             H-HHCCCEEEEECCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---cC
Confidence            8 67899998774321                            3688889999999999985    56677664   57


Q ss_pred             CCcEEEEcCCCc
Q 015895          264 KEAILVNCSRGP  275 (398)
Q Consensus       264 ~gailIN~aRG~  275 (398)
                      +|+++||++--.
T Consensus       220 ~GavVIDvGin~  231 (282)
T PRK14169        220 PGAVVIDVGISR  231 (282)
T ss_pred             CCcEEEEeeccc
Confidence            999999998643

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.01  E-value=5.8e-05  Score=71.51  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=67.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC---cE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK---MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG---~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+++|||||.|+||+.+++.++ ..|   .+ ++++++......+.+.+.+       +     .....+.+++++++|+
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~Di   69 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLL-KTSKEYIEEIIVSNRSNVEKLDQLQARY-------N-----VSTTTDWKQHVTSVDT   69 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHH-hCCCCCcCeEEEECCCCHHHHHHHHHHc-------C-----cEEeCChHHHHhcCCE
Confidence            3568999999999999999874 333   33 7778775333333221111       1     2223578889999999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      |++++|. ...+.++ ++.-..++ +.++|.++=|  ++.+.|.+.+..+
T Consensus        70 Viiavp~-~~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         70 IVLAMPP-SAHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             EEEecCH-HHHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            9999994 2334443 22222233 5689999876  4555676666544

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=0.00034  Score=67.93  Aligned_cols=167  Identities=17%  Similarity=0.230  Sum_probs=106.3

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|.+++....++ ..+++|+.+.+..     +.|+|++..+  ..+++. +++..+-.  |=|-    |+....+..
T Consensus        57 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~--KDVD----Gl~~~n~g~  129 (278)
T PRK14172         57 ANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN--KDID----CLTFISVGK  129 (278)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccC----ccCHhhHHH
Confidence            445688877665443 3577877766542     4689999865  345543 44444332  3221    111111111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                            ...+-+ .....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|..
T Consensus       130 ------l~~g~~-~~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~~VGkPla~l  177 (278)
T PRK14172        130 ------FYKGEK-CFLPCTPNSVITLI----K---------------------SLNIDIEGKEVVVIGRSNIVGKPVAQL  177 (278)
T ss_pred             ------HhCCCC-CCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHHH
Confidence                  111122 24455665555544    1                     12357999999999995 579999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ..-|+.|..++...                            .++.+..++||+|+++++-    .++|..+.   .|
T Consensus       178 L-~~~~AtVt~chs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~---ik  221 (278)
T PRK14172        178 L-LNENATVTICHSKT----------------------------KNLKEVCKKADILVVAIGR----PKFIDEEY---VK  221 (278)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---cC
Confidence            8 67899998876421                            3688889999999999985    55677655   57


Q ss_pred             CCcEEEEcCCC
Q 015895          264 KEAILVNCSRG  274 (398)
Q Consensus       264 ~gailIN~aRG  274 (398)
                      +|+++||++--
T Consensus       222 ~gavVIDvGin  232 (278)
T PRK14172        222 EGAIVIDVGTS  232 (278)
T ss_pred             CCcEEEEeecc
Confidence            99999999753

>PLN00203 glutamyl-tRNA reductase

Probab=97.98  E-value=2.5e-05  Score=82.25  Aligned_cols=102  Identities=18%  Similarity=0.226  Sum_probs=71.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++.+++|+|||.|.||+.+++.| ...|. +|++++|+.... +.+.+.+       +.....+....++.+.+.+||+|
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV  333 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEF-------PDVEIIYKPLDEMLACAAEADVV  333 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence            48899999999999999999998 57886 799999987542 2222111       10111112234677889999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCC-------cEEEEcCCCc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKE-------AILVNCSRGP  275 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~g-------ailIN~aRG~  275 (398)
                      +.++|   ....+|.++.++.++++       -++||.|-..
T Consensus       334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            99987   45667888888877432       3677776543

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=0.00053  Score=66.76  Aligned_cols=168  Identities=18%  Similarity=0.294  Sum_probs=107.6

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+..     ..|++++..+  ..+++. ++++.+-.  |=|-    |+..+.+..
T Consensus        56 a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~p~N~g~  128 (284)
T PRK14170         56 TEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KDVD----GFHPVNVGN  128 (284)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcc----cCChhhhhH
Confidence            345688876665444 3577777766641     4689999765  344443 44444332  3221    222111111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (398)
                      .      ..+.+ +....++.-++.++    +                     +.|.++.||++.|||-+. +|+.+|..
T Consensus       129 l------~~~~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVvGrS~iVGkPla~l  176 (284)
T PRK14170        129 L------FIGKD-SFVPCTPAGIIELI----K---------------------STGTQIEGKRAVVIGRSNIVGKPVAQL  176 (284)
T ss_pred             H------hCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHHH
Confidence            1      11112 24566666666555    1                     134689999999999965 69999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ...++.|..+....                            .++.+..++||+|+++++-    .++|..+.   .|
T Consensus       177 L-~~~~atVtichs~T----------------------------~~l~~~~~~ADIvI~AvG~----~~~i~~~~---vk  220 (284)
T PRK14170        177 L-LNENATVTIAHSRT----------------------------KDLPQVAKEADILVVATGL----AKFVKKDY---IK  220 (284)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHH---cC
Confidence            8 57899998775421                            3688889999999999985    45676654   47


Q ss_pred             CCcEEEEcCCCc
Q 015895          264 KEAILVNCSRGP  275 (398)
Q Consensus       264 ~gailIN~aRG~  275 (398)
                      +|+++||++--.
T Consensus       221 ~GavVIDvGin~  232 (284)
T PRK14170        221 PGAIVIDVGMDR  232 (284)
T ss_pred             CCCEEEEccCcc
Confidence            999999998654

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.96  E-value=3.5e-05  Score=76.75  Aligned_cols=102  Identities=17%  Similarity=0.128  Sum_probs=65.4

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh--hhhhh--hh--cCCCCccccccCCHHHHhhcCCEEE
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--YGQFL--KA--NGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~--~~~~~--~~--~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      |||+|||+||+.+++.+.+.-++++++...............  |....  ..  ......+.....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            699999999999999864345788776543222211111111  11100  00  0000011112346999999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      .|+|   .+.+..+++.+.+|+.+++|+-.-
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence            9976   668899999999999999998754

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.95  E-value=1.8e-05  Score=81.45  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=70.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.|++++|+|.|.||+.+++.| ...| .+|++++++.... ..+.+.       .+..   .....++.+.+..+|+|
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~-------~g~~---~i~~~~l~~~l~~aDvV  244 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKE-------LGGE---AVKFEDLEEYLAEADIV  244 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHH-------cCCe---EeeHHHHHHHHhhCCEE
Confidence            48899999999999999999998 5788 7899999987542 211111       1111   11123577888999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCC----CCcEEEEcCCCchhc
Q 015895          241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVID  278 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk----~gailIN~aRG~~vd  278 (398)
                      +.+++   .+..+++++.++.+.    ...++||.+...=||
T Consensus       245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            99976   445678888777652    234788887543333

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.95  E-value=6.1e-05  Score=69.02  Aligned_cols=149  Identities=15%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      |+|+|||+|.+|..+|-.++ ..|.+|++||...... +.+.+.        ....+++.. ..-......+.++.+++|
T Consensus         1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence            68999999999999999985 8899999999987532 222110        000011100 000122235678888999


Q ss_pred             CEEEEccCCChhhhhhc--------cHHHHhcCCCCcEEEEcCCCchhcHHHH-HHHHhcCCccEEEec-cCCCCCCCC-
Q 015895          238 DVISLHPVLDKTTYHLI--------NKERLATMKKEAILVNCSRGPVIDEVAL-VEHLKQNPMFRVGLD-VFEDEPYMK-  306 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li--------~~~~~~~mk~gailIN~aRG~~vde~aL-~~aL~~g~i~gAalD-V~~~EP~~~-  306 (398)
                      |++++|+|...+..+-.        -+.....++++.++|.-|+-.+=-.+.+ ...|++..-.+.-.+ +|.+|=... 
T Consensus        78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G  157 (185)
T PF03721_consen   78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG  157 (185)
T ss_dssp             SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred             ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence            99999998543322221        2345667899999999999887767754 344443222111122 245554321 


Q ss_pred             ---CCCCCCCceEE
Q 015895          307 ---PGLSEMKNAIV  317 (398)
Q Consensus       307 ---~~L~~~~nvil  317 (398)
                         ..+...|+|++
T Consensus       158 ~a~~d~~~~~rvV~  171 (185)
T PF03721_consen  158 RAIEDFRNPPRVVG  171 (185)
T ss_dssp             SHHHHHHSSSEEEE
T ss_pred             CcchhccCCCEEEE
Confidence               24667788864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.95  E-value=4e-05  Score=73.71  Aligned_cols=102  Identities=22%  Similarity=0.307  Sum_probs=67.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC---cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ++|+|||+|.||+.+|+.+ ...|   .+|.+|||+.... +.+.+.+       +     .....+.++++.+||+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l-~~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGL-LASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CEEEEEechHHHHHHHHHH-HhCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence            5799999999999999987 4556   6899999986542 2211111       1     1223567788899999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      ++|. ...+.++.. ....+  +..+|.+.-|-  ..+.+.+.+.
T Consensus        69 ~v~~-~~~~~v~~~-l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         69 AVKP-QVMEEVLSE-LKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             EcCH-HHHHHHHHH-HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            9984 334444422 22223  46788876664  4556666665

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.94  E-value=0.00044  Score=67.36  Aligned_cols=169  Identities=15%  Similarity=0.201  Sum_probs=106.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCc
Q 015895           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDV  102 (398)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~  102 (398)
                      +..++.|++++....++ ..+++|+.+.+.   +  +.|++++..+  ..+++ .+++..+-.  |=|-    |+..+.+
T Consensus        56 k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  128 (284)
T PRK14177         56 KACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KDVD----GVTTLSF  128 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----cCChhhH
Confidence            33455688877655443 357787776553   1  4799999865  23443 344444322  3221    2211111


Q ss_pred             hHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 015895          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (398)
Q Consensus       103 ~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA  181 (398)
                      .      -...+.+ .....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|
T Consensus       129 g------~l~~g~~-~~~PcTp~avi~ll----~---------------------~y~i~l~Gk~vvViGrS~iVGkPla  176 (284)
T PRK14177        129 G------KLSMGVE-TYLPCTPYGMVLLL----K---------------------EYGIDVTGKNAVVVGRSPILGKPMA  176 (284)
T ss_pred             H------HHHcCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            1      1112222 24455665555543    1                     12357999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       182 ~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      ..| ..-|+.|..++...                            .++.+..++||+|+++++-    .+++..+.   
T Consensus       177 ~lL-~~~~atVt~chs~T----------------------------~~l~~~~~~ADIvIsAvGk----~~~i~~~~---  220 (284)
T PRK14177        177 MLL-TEMNATVTLCHSKT----------------------------QNLPSIVRQADIIVGAVGK----PEFIKADW---  220 (284)
T ss_pred             HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEeCCC----cCccCHHH---
Confidence            998 67899999876422                            3688889999999999974    55676554   


Q ss_pred             CCCCcEEEEcCCC
Q 015895          262 MKKEAILVNCSRG  274 (398)
Q Consensus       262 mk~gailIN~aRG  274 (398)
                      .|+|+++||++--
T Consensus       221 ik~gavVIDvGin  233 (284)
T PRK14177        221 ISEGAVLLDAGYN  233 (284)
T ss_pred             cCCCCEEEEecCc
Confidence            5799999999863

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=0.00053  Score=66.73  Aligned_cols=168  Identities=17%  Similarity=0.217  Sum_probs=106.8

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|.+.+....++ ..+++|+.+.+..     +.|++++..+  ..+++ ++++..+-.  |=|-    |+..+.+..
T Consensus        55 a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g~  127 (282)
T PRK14166         55 CEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDVD----GFHPINVGY  127 (282)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhhHH
Confidence            445688876665443 3577877766642     4689999865  34444 344444332  3221    222222111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                      .      ..+........++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|..
T Consensus       128 l------~~g~~~~~~PcTp~avi~lL----~---------------------~y~i~l~Gk~vvVvGrS~iVGkPla~l  176 (282)
T PRK14166        128 L------NLGLESGFLPCTPLGVMKLL----K---------------------AYEIDLEGKDAVIIGASNIVGRPMATM  176 (282)
T ss_pred             H------hcCCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHHH
Confidence            1      11111124555666665544    1                     12458999999999996 579999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ...++.|..+..+.                            .++.+..++||+|+++++-    .++|..+.   .|
T Consensus       177 L-~~~~atVt~chs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~i~~~~---vk  220 (282)
T PRK14166        177 L-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM---VK  220 (282)
T ss_pred             H-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---cC
Confidence            8 57899998775422                            3688899999999999975    56677654   57


Q ss_pred             CCcEEEEcCCC
Q 015895          264 KEAILVNCSRG  274 (398)
Q Consensus       264 ~gailIN~aRG  274 (398)
                      +|+++||++--
T Consensus       221 ~GavVIDvGin  231 (282)
T PRK14166        221 EGVIVVDVGIN  231 (282)
T ss_pred             CCCEEEEeccc
Confidence            99999999853

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.91  E-value=3.4e-05  Score=69.04  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=57.4

Q ss_pred             ccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       160 g~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      +.++.||++.|||-+. +|+.+|..| ...|+.|...+.+.                            .++++.+++||
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~AD   81 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRAD   81 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSS
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------Ccccceeeecc
Confidence            3579999999999985 999999998 68899998775432                            36888899999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      +|+.+++-    .++|..+   .+|+|+++||++.-..
T Consensus        82 IVVsa~G~----~~~i~~~---~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   82 IVVSAVGK----PNLIKAD---WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             EEEE-SSS----TT-B-GG---GS-TTEEEEE--CEEE
T ss_pred             EEeeeecc----ccccccc---cccCCcEEEecCCccc
Confidence            99999974    5666544   5699999999988654

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=0.00058  Score=66.54  Aligned_cols=168  Identities=21%  Similarity=0.237  Sum_probs=106.9

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+..     ..|++++..+  ..++. ++++..+-.  |=|-    |+..+.+..
T Consensus        57 a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~g~  129 (284)
T PRK14193         57 CAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDAD----GLHPTNLGR  129 (284)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCcc----CCChhhhhH
Confidence            345688876655443 3577877766542     3689999765  34453 345554433  3221    221111111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                            ...+.++ ....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|..
T Consensus       130 ------l~~~~~~-~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrS~~VGkPla~l  177 (284)
T PRK14193        130 ------LVLNEPA-PLPCTPRGIVHLL----R---------------------RYDVELAGAHVVVIGRGVTVGRPIGLL  177 (284)
T ss_pred             ------HhCCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHHH
Confidence                  1122222 3455666555544    1                     13458999999999985 679999998


Q ss_pred             HHhc--CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          184 MVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       184 la~~--fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      | ..  .++.|..+....                            .++.+..++||+|+++++-    .++|..+.   
T Consensus       178 L-~~~~~~atVtvchs~T----------------------------~~l~~~~k~ADIvV~AvGk----p~~i~~~~---  221 (284)
T PRK14193        178 L-TRRSENATVTLCHTGT----------------------------RDLAAHTRRADIIVAAAGV----AHLVTADM---  221 (284)
T ss_pred             H-hhccCCCEEEEeCCCC----------------------------CCHHHHHHhCCEEEEecCC----cCccCHHH---
Confidence            8 45  689998775421                            3688899999999999985    45777654   


Q ss_pred             CCCCcEEEEcCCCc
Q 015895          262 MKKEAILVNCSRGP  275 (398)
Q Consensus       262 mk~gailIN~aRG~  275 (398)
                      .|+|+++||++.-.
T Consensus       222 ik~GavVIDvGin~  235 (284)
T PRK14193        222 VKPGAAVLDVGVSR  235 (284)
T ss_pred             cCCCCEEEEccccc
Confidence            57999999998754

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=0.00051  Score=67.36  Aligned_cols=170  Identities=16%  Similarity=0.169  Sum_probs=104.6

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+..     +.|++++..+  ..+++. +++..+-.  |=|-    |+....+..
T Consensus        56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--KDVD----Gl~~~n~g~  128 (295)
T PRK14174         56 CKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--KDVD----GFHPENLGR  128 (295)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccChhhHHH
Confidence            445688887665543 3577777766542     3689999765  445554 34444322  3221    111111111


Q ss_pred             hhhcCceEEec-CCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895          105 ANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (398)
Q Consensus       105 ~~~~gI~V~n~-p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (398)
                      .      ..+. ..+....+|.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|.
T Consensus       129 l------~~~~~~~~~~PcTp~ail~ll----~---------------------~y~i~l~Gk~vvViGrS~iVG~Pla~  177 (295)
T PRK14174        129 L------VMGHLDKCFVSCTPYGILELL----G---------------------RYNIETKGKHCVVVGRSNIVGKPMAN  177 (295)
T ss_pred             H------hcCCCCCCcCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence            1      1111 0123445555443332    2                     12357999999999995 57999999


Q ss_pred             HHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895          183 MMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (398)
Q Consensus       183 ~la~~---fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~  259 (398)
                      .|.+.   .++.|.......                            .++.+.+++||+|+.+++.    .++|..+.+
T Consensus       178 lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIvI~Avg~----~~li~~~~v  225 (295)
T PRK14174        178 LMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQADILIAAIGK----ARFITADMV  225 (295)
T ss_pred             HHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCc----cCccCHHHc
Confidence            87432   477877654321                            3578889999999999964    277888887


Q ss_pred             hcCCCCcEEEEcCCCc
Q 015895          260 ATMKKEAILVNCSRGP  275 (398)
Q Consensus       260 ~~mk~gailIN~aRG~  275 (398)
                         |+|+++||++-..
T Consensus       226 ---k~GavVIDVgi~~  238 (295)
T PRK14174        226 ---KPGAVVIDVGINR  238 (295)
T ss_pred             ---CCCCEEEEeeccc
Confidence               9999999998543

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=0.00062  Score=66.76  Aligned_cols=169  Identities=21%  Similarity=0.206  Sum_probs=106.8

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++.+....++ ..+++|+.+.+.   +  +.|++++..+  ..+++ ++++..+-.  |=|-    |+....+.
T Consensus        56 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g  128 (297)
T PRK14186         56 ACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--KDAD----GLHPLNLG  128 (297)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhHH
Confidence            3445688876665443 357777776654   2  3689999865  34443 344444332  3221    11111111


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (398)
                            -...+.+ .....+|.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|.
T Consensus       129 ------~l~~~~~-~~~PcTp~aii~lL----~---------------------~~~i~l~Gk~vvVIGrS~iVGkPla~  176 (297)
T PRK14186        129 ------RLVKGEP-GLRSCTPAGVMRLL----R---------------------SQQIDIAGKKAVVVGRSILVGKPLAL  176 (297)
T ss_pred             ------HHhCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence                  1112222 23455565555544    1                     12458999999999995 57999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ...|+.|..+....                            .++.+..++||+|+++++-    .+++..+.   .
T Consensus       177 lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~---i  220 (297)
T PRK14186        177 ML-LAANATVTIAHSRT----------------------------QDLASITREADILVAAAGR----PNLIGAEM---V  220 (297)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---c
Confidence            98 67899998774321                            3688899999999999984    45676654   5


Q ss_pred             CCCcEEEEcCCCc
Q 015895          263 KKEAILVNCSRGP  275 (398)
Q Consensus       263 k~gailIN~aRG~  275 (398)
                      |+|+++||++--.
T Consensus       221 k~gavVIDvGin~  233 (297)
T PRK14186        221 KPGAVVVDVGIHR  233 (297)
T ss_pred             CCCCEEEEecccc
Confidence            7999999998654

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.89  E-value=8e-05  Score=59.45  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=53.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ..+.+++++|+|.|.+|+.+++.+ ... +.+|.+||+                                        |+
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di   57 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI   57 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence            358899999999999999999998 566 566665531                                        99


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      ++.+.+-    .+.+.++..+.+++++++++++
T Consensus        58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          58 LVTATPA----GVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence            9999874    4555566788899999999875

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=0.00097  Score=65.06  Aligned_cols=169  Identities=17%  Similarity=0.257  Sum_probs=106.5

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|.+++....++ ..+++|+.+.+.     ++.|++++..+  ..+++. ++++.+-.  |=|-    |+..+.+..
T Consensus        51 ~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~p~n~g~  123 (287)
T PRK14181         51 ATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--KDVD----GLHPVNMGK  123 (287)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--cCcc----cCChhhHHH
Confidence            445688877665443 357777776663     24799999865  345543 44444332  3221    221111111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                            ...+...+....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|..
T Consensus       124 ------l~~g~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~l  172 (287)
T PRK14181        124 ------LLLGETDGFIPCTPAGIIELL----K---------------------YYEIPLHGRHVAIVGRSNIVGKPLAAL  172 (287)
T ss_pred             ------HhcCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHHH
Confidence                  111221234555666555544    1                     12358999999999996 579999998


Q ss_pred             HHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895          184 MVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (398)
Q Consensus       184 la~~f----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~  259 (398)
                      | ..-    ++.|..+....                            .++.+.+++||+|+++++-    .+++..+. 
T Consensus       173 L-~~~~~~~~AtVtvchs~T----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~-  218 (287)
T PRK14181        173 L-MQKHPDTNATVTLLHSQS----------------------------ENLTEILKTADIIIAAIGV----PLFIKEEM-  218 (287)
T ss_pred             H-HhCcCCCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence            8 455    78888764321                            3688889999999999975    46777655 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 015895          260 ATMKKEAILVNCSRGP  275 (398)
Q Consensus       260 ~~mk~gailIN~aRG~  275 (398)
                        .|+|+++||++--.
T Consensus       219 --ik~GavVIDvGin~  232 (287)
T PRK14181        219 --IAEKAVIVDVGTSR  232 (287)
T ss_pred             --cCCCCEEEEecccc
Confidence              47999999998644

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.88  E-value=2.2e-05  Score=76.37  Aligned_cols=102  Identities=20%  Similarity=0.342  Sum_probs=75.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      .+..-+|.|||.|-+|.+-||.+ .++|++|...|.+... ++++-+.|+.++      .........+++.+.++|+|+
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA-~glgA~Vtild~n~~r-l~~ldd~f~~rv------~~~~st~~~iee~v~~aDlvI  236 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIA-IGLGADVTILDLNIDR-LRQLDDLFGGRV------HTLYSTPSNIEEAVKKADLVI  236 (371)
T ss_pred             CCCCccEEEECCccccchHHHHH-hccCCeeEEEecCHHH-HhhhhHhhCcee------EEEEcCHHHHHHHhhhccEEE
Confidence            46667899999999999999985 7999999999998753 333333332111      111122345889999999997


Q ss_pred             --EccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          242 --LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       242 --l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                        +.+|. .+.-.++.++.+++||||+++||++
T Consensus       237 gaVLIpg-akaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         237 GAVLIPG-AKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEEEecC-CCCceehhHHHHHhcCCCcEEEEEE
Confidence              44664 4567788899999999999999985

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.87  E-value=0.00078  Score=65.76  Aligned_cols=169  Identities=15%  Similarity=0.207  Sum_probs=106.5

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++++....++ ..+++|+.+.+.     +..|++++..+  ..+++ ++++..+-.  |=|-    |+....  
T Consensus        56 ~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N--  126 (288)
T PRK14171         56 NAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KDID----GFHPLN--  126 (288)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCCccc--
Confidence            3445688887665443 357888776664     24789999865  34444 344444322  3221    111111  


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (398)
                          .|-...+........++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|.
T Consensus       127 ----~g~l~~g~~~~~~PcTp~av~~lL----~---------------------~y~i~l~GK~vvViGrS~iVGkPla~  177 (288)
T PRK14171        127 ----VGYLHSGISQGFIPCTALGCLAVI----K---------------------KYEPNLTGKNVVIIGRSNIVGKPLSA  177 (288)
T ss_pred             ----hhhhhcCCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence                111122221234555565555443    2                     12357999999999996 57999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ..-++.|..+....                            .++.+..++||+|++++.-    .++|..+.   .
T Consensus       178 lL-~~~~ATVtichs~T----------------------------~~L~~~~~~ADIvV~AvGk----p~~i~~~~---v  221 (288)
T PRK14171        178 LL-LKENCSVTICHSKT----------------------------HNLSSITSKADIVVAAIGS----PLKLTAEY---F  221 (288)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----CCccCHHH---c
Confidence            98 67899998765321                            3688899999999999984    46777654   4


Q ss_pred             CCCcEEEEcCCC
Q 015895          263 KKEAILVNCSRG  274 (398)
Q Consensus       263 k~gailIN~aRG  274 (398)
                      |+|+++||++--
T Consensus       222 k~GavVIDvGin  233 (288)
T PRK14171        222 NPESIVIDVGIN  233 (288)
T ss_pred             CCCCEEEEeecc
Confidence            799999999853

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.86  E-value=7.2e-05  Score=72.01  Aligned_cols=97  Identities=22%  Similarity=0.267  Sum_probs=63.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .++|||||+|+||+++++.+. .-+    -+++++|++....                    +.....+..+++.+||+|
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~-~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V   61 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIE-NSNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII   61 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHH-hCCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence            468999999999999999984 333    2589998865320                    111234677888999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      ++++|- ..++.++. +....++++. +|.+.-|  +..+.+.+.+.
T Consensus        62 ilavkp-~~~~~vl~-~i~~~l~~~~-iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         62 VLAVKP-DLAGKVLL-EIKPYLGSKL-LISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             EEEeCH-HHHHHHHH-HHHhhccCCE-EEEEeCC--ccHHHHHHHcC
Confidence            999983 45666654 3333455554 4555444  33555555554

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.85  E-value=0.00014  Score=68.25  Aligned_cols=104  Identities=13%  Similarity=0.120  Sum_probs=63.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+||| .|+||+.+|+.| ...|.+|.+++++.+.. +...+.+...+...+. .... ...+..+.++.+|+|++++
T Consensus         1 MkI~IIGG~G~mG~ala~~L-~~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRL-AKAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHH-HhCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEEC
Confidence            4799997 999999999998 46789999999876542 2211111000000010 0001 1235678889999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      |. .....++ ++.-..++ +.++|+++-|--
T Consensus        77 p~-~~~~~~l-~~l~~~l~-~~vvI~~~ngi~  105 (219)
T TIGR01915        77 PW-DHVLKTL-ESLRDELS-GKLVISPVVPLA  105 (219)
T ss_pred             CH-HHHHHHH-HHHHHhcc-CCEEEEeccCce
Confidence            95 3344444 22222344 589999977643

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.84  E-value=6.8e-05  Score=74.16  Aligned_cols=98  Identities=21%  Similarity=0.261  Sum_probs=63.9

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      +.|++|+|||.|.||+.+++.+ ...| .+|.++|++.... +.+.+.+       +..   .....++.+.+.++|+|+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvVi  243 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKEL-------GGN---AVPLDELLELLNEADVVI  243 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EEeHHHHHHHHhcCCEEE
Confidence            7899999999999999999997 5555 6899999987542 1111111       211   111235677788999999


Q ss_pred             EccCCChhhhhhccHHHHhcC-CCCcEEEEcCCC
Q 015895          242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRG  274 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~m-k~gailIN~aRG  274 (398)
                      .++|.. +.+.++ +..++.. +++.++||++..
T Consensus       244 ~at~~~-~~~~~~-~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         244 SATGAP-HYAKIV-ERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             ECCCCC-chHHHH-HHHHhhCCCCCeEEEEeCCC
Confidence            999953 332222 3333322 356788887753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.84  E-value=0.00095  Score=66.83  Aligned_cols=169  Identities=17%  Similarity=0.226  Sum_probs=105.8

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHh---cC--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALI---GD--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~---~~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++.+....++ ..+++|+.+.+   .+  +.|+|++..+  ..+++ ++++..+-.  |=|-    |+....+.
T Consensus       127 ~~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--KDVD----Gl~p~N~G  199 (364)
T PLN02616        127 ACDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--KDVD----GFHPLNIG  199 (364)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhhH
Confidence            3445677765554333 35778877766   22  4789999865  34554 344444332  3221    22211111


Q ss_pred             HhhhcCceEEe--cCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHH
Q 015895          104 AANKYGIAVGN--TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAY  180 (398)
Q Consensus       104 ~~~~~gI~V~n--~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~v  180 (398)
                      ..      ..+  -+ .....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+
T Consensus       200 ~L------~~g~~~~-~f~PCTp~avielL----~---------------------~y~i~l~GK~vvVIGRS~iVGkPL  247 (364)
T PLN02616        200 RL------AMRGREP-LFVPCTPKGCIELL----H---------------------RYNVEIKGKRAVVIGRSNIVGMPA  247 (364)
T ss_pred             HH------hcCCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccccHHH
Confidence            11      111  12 23455555544433    2                     12358999999999995 579999


Q ss_pred             HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHh
Q 015895          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (398)
Q Consensus       181 A~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~  260 (398)
                      |..| ...++.|..+....                            .++.+..++||+|+.+++-    .++|..+.  
T Consensus       248 a~LL-~~~~ATVTicHs~T----------------------------~nl~~~~r~ADIVIsAvGk----p~~i~~d~--  292 (364)
T PLN02616        248 ALLL-QREDATVSIVHSRT----------------------------KNPEEITREADIIISAVGQ----PNMVRGSW--  292 (364)
T ss_pred             HHHH-HHCCCeEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCcCCHHH--
Confidence            9998 67899998875321                            3688899999999999974    55677654  


Q ss_pred             cCCCCcEEEEcCCCc
Q 015895          261 TMKKEAILVNCSRGP  275 (398)
Q Consensus       261 ~mk~gailIN~aRG~  275 (398)
                       .|+|+++||++--.
T Consensus       293 -vK~GAvVIDVGIn~  306 (364)
T PLN02616        293 -IKPGAVVIDVGINP  306 (364)
T ss_pred             -cCCCCEEEeccccc
Confidence             47999999998643

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=0.00073  Score=65.90  Aligned_cols=167  Identities=19%  Similarity=0.219  Sum_probs=105.3

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++.+....++ ..+++|+.+.+.   +  +.|++++..+  ..+++. +++..+-.  |=|-    |+....+ 
T Consensus        55 ~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N~-  126 (286)
T PRK14184         55 ACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--KDVD----GFHPENM-  126 (286)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--cCcc----cCCHhhH-
Confidence            3445688877665443 357787776654   1  4689999865  345543 34443322  3221    1111111 


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (398)
                           |-...+-++ ....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|.
T Consensus       127 -----g~l~~~~~~-~~PcTp~av~~lL----~---------------------~~~i~l~Gk~vvViGrS~iVG~Pla~  175 (286)
T PRK14184        127 -----GRLALGLPG-FRPCTPAGVMTLL----E---------------------RYGLSPAGKKAVVVGRSNIVGKPLAL  175 (286)
T ss_pred             -----HHHhCCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence                 111112222 4455565544433    1                     12358999999999995 56999999


Q ss_pred             HHHhc----CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895          183 MMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (398)
Q Consensus       183 ~la~~----fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~  258 (398)
                      .| ..    -++.|..+....                            .++.+.+++||+|+.+++.    .++|..+.
T Consensus       176 lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG~----p~li~~~~  222 (286)
T PRK14184        176 ML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIGR----PRFVTADM  222 (286)
T ss_pred             HH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHHH
Confidence            88 55    678888765321                            3688899999999999963    66788777


Q ss_pred             HhcCCCCcEEEEcCC
Q 015895          259 LATMKKEAILVNCSR  273 (398)
Q Consensus       259 ~~~mk~gailIN~aR  273 (398)
                      +   |+|+++||++-
T Consensus       223 v---k~GavVIDVGi  234 (286)
T PRK14184        223 V---KPGAVVVDVGI  234 (286)
T ss_pred             c---CCCCEEEEeee
Confidence            6   99999999974

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.83  E-value=0.00013  Score=72.48  Aligned_cols=120  Identities=16%  Similarity=0.183  Sum_probs=74.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-----CccccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-----PVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++|+|||.|.||+.+|.+| ...|.+|.+||+....  +...+ .+.........     +.......+. +.++.+|+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L-~~~G~~V~~~~r~~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRL-AAAGADVTLIGRARIG--DELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhcCCcEEEEecHHHH--HHHHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            5799999999999999998 4679999999985421  11110 00000000000     0001112344 567899999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      ++++|. ++....+ ++....++++.++|.+.-| +-..+.+.+.+...++..
T Consensus        78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~  127 (341)
T PRK08229         78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA  127 (341)
T ss_pred             EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence            999985 4555555 4456667899999988654 444566777776554433

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.82  E-value=0.00058  Score=66.99  Aligned_cols=169  Identities=15%  Similarity=0.221  Sum_probs=106.1

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++.+....++ ..+++|+.+.+..     +.|++++..+  ..+++ ++++..+-.  |=|-    |+....+..
T Consensus        64 a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~g~  136 (299)
T PLN02516         64 CAEVGIKSFDVDLPE-NISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE--KDVD----GFHPLNIGK  136 (299)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc--cccC----ccCHhhHhh
Confidence            445688776655443 3578888766642     4689999765  34443 334444332  3221    111111111


Q ss_pred             hhhcCceEEec-CCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHH
Q 015895          105 ANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (398)
Q Consensus       105 ~~~~gI~V~n~-p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~  182 (398)
                            ...+. ..+....++.-++.++    +                     +.+.++.||++.|||-+. +|+.+|.
T Consensus       137 ------l~~~~~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVIGRS~iVGkPla~  185 (299)
T PLN02516        137 ------LAMKGREPLFLPCTPKGCLELL----S---------------------RSGIPIKGKKAVVVGRSNIVGLPVSL  185 (299)
T ss_pred             ------HhcCCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence                  11110 1224555666555544    1                     124589999999999965 6999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ..-|+.|..+....                            .++++.+++||+|+.++.-    .++|..+.   .
T Consensus       186 lL-~~~~ATVtvchs~T----------------------------~nl~~~~~~ADIvv~AvGk----~~~i~~~~---v  229 (299)
T PLN02516        186 LL-LKADATVTVVHSRT----------------------------PDPESIVREADIVIAAAGQ----AMMIKGDW---I  229 (299)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---c
Confidence            88 57899998875421                            3688899999999999974    36777655   4


Q ss_pred             CCCcEEEEcCCCc
Q 015895          263 KKEAILVNCSRGP  275 (398)
Q Consensus       263 k~gailIN~aRG~  275 (398)
                      |+|+++||++--.
T Consensus       230 k~gavVIDvGin~  242 (299)
T PLN02516        230 KPGAAVIDVGTNA  242 (299)
T ss_pred             CCCCEEEEeeccc
Confidence            7999999998643

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.82  E-value=8.3e-05  Score=74.06  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      -+++||||.|.+|+..++.++..+ .-+|.+||++.... +.+.+.    +.+.+   ..+..+.+.++++++||+|++|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~----~~~~g---~~v~~~~~~~eav~~aDiVita  199 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALR----ASDYE---VPVRAATDPREAVEGCDILVTT  199 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhhC---CcEEEeCCHHHHhccCCEEEEe
Confidence            468999999999999777653333 35899999988653 222221    11111   1123357899999999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      +|.   +.-++..+   .+|+|+.+..++.-
T Consensus       200 T~s---~~P~~~~~---~l~~g~~v~~vGs~  224 (325)
T TIGR02371       200 TPS---RKPVVKAD---WVSEGTHINAIGAD  224 (325)
T ss_pred             cCC---CCcEecHH---HcCCCCEEEecCCC
Confidence            984   35666554   35999999999853

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.81  E-value=0.00083  Score=66.91  Aligned_cols=170  Identities=14%  Similarity=0.253  Sum_probs=107.6

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++.+....++ ..+++|+.+.+..     +.|+|++..+  ..+++. +++...-.  |=|-    |+..+.+-.
T Consensus       111 a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDVD----Gl~p~N~G~  183 (345)
T PLN02897        111 CEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDVD----GFHPLNVGN  183 (345)
T ss_pred             HHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----CCCHHHHHH
Confidence            445688777665443 3577888776541     4789999865  345544 44443322  3221    222222111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (398)
                      ...+     +........++.-++.++    +                     +.+.++.||++.|||-+. +|+.+|..
T Consensus       184 L~~~-----~~~~~~~PCTp~avi~LL----~---------------------~~~i~l~GK~vvVIGRS~iVGkPla~L  233 (345)
T PLN02897        184 LAMR-----GREPLFVSCTPKGCVELL----I---------------------RSGVEIAGKNAVVIGRSNIVGLPMSLL  233 (345)
T ss_pred             HhcC-----CCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccccHHHHHH
Confidence            1111     000124556666666555    1                     134589999999999965 69999998


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ..-++.|..+....                            .++.+..++||+|+.+++-    .+++..+.   .|
T Consensus       234 L-~~~~ATVTicHs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~v~~d~---vk  277 (345)
T PLN02897        234 L-QRHDATVSTVHAFT----------------------------KDPEQITRKADIVIAAAGI----PNLVRGSW---LK  277 (345)
T ss_pred             H-HHCCCEEEEEcCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---cC
Confidence            7 67889998764321                            3678899999999999985    55677655   47


Q ss_pred             CCcEEEEcCCCc
Q 015895          264 KEAILVNCSRGP  275 (398)
Q Consensus       264 ~gailIN~aRG~  275 (398)
                      +|+++||++--.
T Consensus       278 ~GavVIDVGin~  289 (345)
T PLN02897        278 PGAVVIDVGTTP  289 (345)
T ss_pred             CCCEEEEccccc
Confidence            999999998643

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.80  E-value=0.00022  Score=67.40  Aligned_cols=161  Identities=19%  Similarity=0.216  Sum_probs=100.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCCh----hhH--HHHHHhhhhhhhhhcCCCCccccccCCHH
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sl~  231 (398)
                      ..+.++++.|+|.|.+|+.+|+.| ...|+   +++.+|++.    ...  +..+...+.   +..+...  . . .++.
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~-~-~~l~   92 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T-G-GTLK   92 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c-c-CCHH
Confidence            468899999999999999999998 57787   599999982    211  111111111   1111001  1 1 3677


Q ss_pred             HHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC-ccEEEeccCCCCCCCCCCCC
Q 015895          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLS  310 (398)
Q Consensus       232 ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~-i~gAalDV~~~EP~~~~~L~  310 (398)
                      +.++++|+|+.+.|     .++++.+.++.|+++.++...+..  ..|.-+.++.+.|. +..-|.     +..    ..
T Consensus        93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~~----~~  156 (226)
T cd05311          93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SDF----PN  156 (226)
T ss_pred             HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CCC----cc
Confidence            78889999999887     577888999999999999988843  34444445555443 233331     111    23


Q ss_pred             CCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHHc
Q 015895          311 EMKNAIVVPHIASASK-----WTREGMATLAALNVLGKIK  345 (398)
Q Consensus       311 ~~~nvilTPHia~~T~-----ea~~~~~~~~~~ni~~~l~  345 (398)
                      +-.|+++-|-++-...     .--+.|...+++.+..+..
T Consensus       157 Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~  196 (226)
T cd05311         157 QVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAE  196 (226)
T ss_pred             ccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence            5679999998764221     1124455555566655544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.79  E-value=0.00078  Score=65.58  Aligned_cols=168  Identities=14%  Similarity=0.230  Sum_probs=105.5

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+.   +  +.|++++..+  ..+++ ++++..+-.  |=|-    |+....+  
T Consensus        56 ~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~--  126 (282)
T PRK14180         56 CAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KDVD----GFHPTNV--  126 (282)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--cccc----ccChhhH--
Confidence            445688887665443 356777776553   2  3689999765  34444 344444332  3221    1111111  


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~  183 (398)
                          |-...+...+....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|..
T Consensus       127 ----g~l~~g~~~~~~PcTp~aii~lL----~---------------------~y~i~l~Gk~vvViGrS~~VGkPla~l  177 (282)
T PRK14180        127 ----GRLQLRDKKCLESCTPKGIMTML----R---------------------EYGIKTEGAYAVVVGASNVVGKPVSQL  177 (282)
T ss_pred             ----HHHhcCCCCCcCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHHH
Confidence                11111211223455666555544    1                     12457999999999995 579999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ..-|+.|..+....                            .++.+..++||+|+++++-    .++|..+.   .|
T Consensus       178 L-~~~~ATVt~chs~T----------------------------~dl~~~~k~ADIvIsAvGk----p~~i~~~~---vk  221 (282)
T PRK14180        178 L-LNAKATVTTCHRFT----------------------------TDLKSHTTKADILIVAVGK----PNFITADM---VK  221 (282)
T ss_pred             H-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcCEEEEccCC----cCcCCHHH---cC
Confidence            8 67899998875421                            3678889999999999985    55676644   57


Q ss_pred             CCcEEEEcCCC
Q 015895          264 KEAILVNCSRG  274 (398)
Q Consensus       264 ~gailIN~aRG  274 (398)
                      +|+++||++--
T Consensus       222 ~gavVIDvGin  232 (282)
T PRK14180        222 EGAVVIDVGIN  232 (282)
T ss_pred             CCcEEEEeccc
Confidence            99999999853

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.79  E-value=9.1e-05  Score=73.37  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=69.2

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ...++++|||.|.+|+.+++.+...++ .+|.+|+|+++. .+.+.+.+    ...+   .......++++.+++||+|+
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi  194 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAEL----RAQG---FDAEVVTDLEAAVRQADIIS  194 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEE
Confidence            346789999999999999986543355 589999998754 23322221    1111   11223467899999999998


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL  286 (398)
                      .+.|.+   ..++..   +.+++|+ +||+.-........+-..+
T Consensus       195 ~aT~s~---~pvl~~---~~l~~g~-~i~~ig~~~~~~~El~~~~  232 (314)
T PRK06141        195 CATLST---EPLVRG---EWLKPGT-HLDLVGNFTPDMRECDDEA  232 (314)
T ss_pred             EeeCCC---CCEecH---HHcCCCC-EEEeeCCCCcccccCCHHH
Confidence            888843   455655   3568998 5555433333344443333

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.79  E-value=0.00018  Score=63.03  Aligned_cols=80  Identities=23%  Similarity=0.349  Sum_probs=64.9

Q ss_pred             ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       160 g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      |.+++||++.|+|- ..+|+.+|..| ...|++|...+.+.                            .++++..++||
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD   73 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD   73 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence            46899999999998 56788999987 67899998876422                            26788899999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +|+.+++..    ++|+.+.   +|+|+++||++...
T Consensus        74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence            999999853    5677655   68999999998754

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.78  E-value=0.0001  Score=71.98  Aligned_cols=80  Identities=23%  Similarity=0.321  Sum_probs=64.5

Q ss_pred             ccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       160 g~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      +.++.||++.|||.|. +|+.+|..| ...|++|..+++..                            .++.+.+++||
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aD  204 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQAD  204 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCC
Confidence            3579999999999998 999999997 68899999887621                            25677789999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +|+.+++. +   +++..+.   +|+|++++|++-..
T Consensus       205 IvI~AtG~-~---~~v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        205 IIVGAVGK-P---ELIKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             EEEEccCC-C---CcCCHHH---cCCCCEEEEEEEee
Confidence            99999963 2   2676644   79999999997643

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.77  E-value=0.00028  Score=68.14  Aligned_cols=104  Identities=23%  Similarity=0.324  Sum_probs=74.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|||||+|+||+.++.-+ ..-|    -+|++.+|+..... .+.+.|       +.     ....+..++..++|+|+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl-~~~g~~~~~~I~v~~~~~e~~~-~l~~~~-------g~-----~~~~~~~~~~~~advv~   67 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGL-LKSGALPPEEIIVTNRSEEKRA-ALAAEY-------GV-----VTTTDNQEAVEEADVVF   67 (266)
T ss_pred             ceEEEEccCHHHHHHHHHH-HhcCCCCcceEEEeCCCHHHHH-HHHHHc-------CC-----cccCcHHHHHhhCCEEE
Confidence            5799999999999999987 4556    58999999886643 222222       21     11456788999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCC---CCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk---~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +++.  |+.    -.+.++.++   ++.++|.++=|  +..+.|.+++.+-++
T Consensus        68 LavK--Pq~----~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v  112 (266)
T COG0345          68 LAVK--PQD----LEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV  112 (266)
T ss_pred             EEeC--hHh----HHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence            9996  322    245666665   69999999888  456777777763333

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.77  E-value=0.0008  Score=65.48  Aligned_cols=170  Identities=16%  Similarity=0.139  Sum_probs=108.3

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|..++....++ ..+++|+.+.+.   +  +.|++++..+  ..+++ ++++..+-.  |=|       |.+-  
T Consensus        54 ~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~--KDV-------DGl~--  121 (282)
T PRK14182         54 DCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA--KDA-------DGFH--  121 (282)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCc-------CCCC--
Confidence            3445688877665443 357787776663   1  4689999865  34544 344444332  322       2221  


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (398)
                       ....|-...+.++.....+|.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|.
T Consensus       122 -~~n~g~l~~g~~~~~~PcTp~avi~ll----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~  175 (282)
T PRK14182        122 -PFNVGALSIGIAGVPRPCTPAGVMRML----D---------------------EARVDPKGKRALVVGRSNIVGKPMAM  175 (282)
T ss_pred             -HhHHHHHhCCCCCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHHH
Confidence             011222223333323455666555544    1                     12357999999999995 57999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ..-++.|..+..+.                            .++.+..++||+|+++++-    .++|..+.   .
T Consensus       176 lL-~~~~AtVtichs~T----------------------------~nl~~~~~~ADIvI~AvGk----~~~i~~~~---i  219 (282)
T PRK14182        176 ML-LERHATVTIAHSRT----------------------------ADLAGEVGRADILVAAIGK----AELVKGAW---V  219 (282)
T ss_pred             HH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHH---c
Confidence            98 57789998875421                            3678889999999999974    56777655   4


Q ss_pred             CCCcEEEEcCCCc
Q 015895          263 KKEAILVNCSRGP  275 (398)
Q Consensus       263 k~gailIN~aRG~  275 (398)
                      |+|+++||++-..
T Consensus       220 k~gaiVIDvGin~  232 (282)
T PRK14182        220 KEGAVVIDVGMNR  232 (282)
T ss_pred             CCCCEEEEeecee
Confidence            7999999998644

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.76  E-value=6e-05  Score=77.70  Aligned_cols=97  Identities=22%  Similarity=0.287  Sum_probs=66.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.|++++|+|.|.||+.+++.+ ...|. +|++++++.... ..+.+.+       +..   .....++.+.+..+|+|
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvV  246 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GGE---AIPLDELPEALAEADIV  246 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CCc---EeeHHHHHHHhccCCEE
Confidence            47889999999999999999997 68897 899999987542 2111111       111   11123566778899999


Q ss_pred             EEccCCChhhhhhccHHHHhcC-----CCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~m-----k~gailIN~aR  273 (398)
                      +.++|.   ...++..+.++.+     ..+.++||++-
T Consensus       247 I~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        247 ISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             EECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            999874   3445666666554     24567777754

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.76  E-value=0.0014  Score=64.32  Aligned_cols=170  Identities=15%  Similarity=0.201  Sum_probs=105.6

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++++....++ ..+++|+.+.+..     +.|+|++..+  ..+++ ++++..+-.  |=|-    |+..+.+.
T Consensus        55 ~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g  127 (297)
T PRK14167         55 DCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KDVD----GFHPENVG  127 (297)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhhH
Confidence            3445688887665543 3577777766542     3689999865  34444 344444322  3221    22111111


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (398)
                      .      ...+.+ .....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|.
T Consensus       128 ~------l~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~  175 (297)
T PRK14167        128 R------LVAGDA-RFKPCTPHGIQKLL----A---------------------AAGVDTEGADVVVVGRSDIVGKPMAN  175 (297)
T ss_pred             H------HhCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCcccHHHHHH
Confidence            1      111222 24556666666544    1                     12357999999999995 57999999


Q ss_pred             HHHhcC---CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895          183 MMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (398)
Q Consensus       183 ~la~~f---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~  259 (398)
                      .|.+.+   ++.|..+....                            .++.+..++||+|++++.-    .++|..+. 
T Consensus       176 lL~~~~~~~~aTVtvchs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~-  222 (297)
T PRK14167        176 LLIQKADGGNATVTVCHSRT----------------------------DDLAAKTRRADIVVAAAGV----PELIDGSM-  222 (297)
T ss_pred             HHhcCccCCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence            884332   78888764321                            3688889999999999864    45777644 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 015895          260 ATMKKEAILVNCSRGP  275 (398)
Q Consensus       260 ~~mk~gailIN~aRG~  275 (398)
                        .|+|+++||++-..
T Consensus       223 --ik~gaiVIDvGin~  236 (297)
T PRK14167        223 --LSEGATVIDVGINR  236 (297)
T ss_pred             --cCCCCEEEEccccc
Confidence              57999999998543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.74  E-value=0.00018  Score=70.20  Aligned_cols=121  Identities=12%  Similarity=0.194  Sum_probs=74.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.||..+|..|+ ..|.+|..|++ .+ ..+...+ .+-...... ..........+.+++...+|+|++++
T Consensus         1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence            47999999999999999984 56899999998 33 2222111 000000000 00000111245667678999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      |. .++...+ ++.....+++.++|.+.-| +-.++.+.+.+.+.++.+
T Consensus        77 k~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~  122 (305)
T PRK12921         77 KA-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG  122 (305)
T ss_pred             cc-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence            95 3445544 3344446778888877665 444667777776655443

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.73  E-value=0.0011  Score=64.29  Aligned_cols=201  Identities=19%  Similarity=0.238  Sum_probs=121.7

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--cccc-HHHHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWG-ETLFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~-~~~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|+..+....++ ..+++|+.+.+.+     ..++|++..+  ..++ ..+++...--  |=+       |.+-- 
T Consensus        54 ~~~~iGi~~~~~~l~~-~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~--KDV-------DG~hp-  122 (283)
T COG0190          54 AAEEIGIASELYDLPE-DITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPE--KDV-------DGFHP-  122 (283)
T ss_pred             HHHHcCCeeEEEeCCC-cCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcC--CCc-------cccCh-
Confidence            3445677766655443 3678888876642     4799999764  2344 3444443221  221       22210 


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh-HHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA~  182 (398)
                        ..-|-...+ +...-..++.-++.++    |                     +.+.+|+||++.|||-++| |+.+|.
T Consensus       123 --~N~g~L~~~-~~~~~PCTp~gi~~ll----~---------------------~~~i~l~Gk~~vVVGrS~iVGkPla~  174 (283)
T COG0190         123 --YNLGKLAQG-EPGFLPCTPAGIMTLL----E---------------------EYGIDLRGKNVVVVGRSNIVGKPLAL  174 (283)
T ss_pred             --hHhcchhcC-CCCCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcCcHHHHH
Confidence              112223333 3333344444444332    2                     1335899999999999875 899999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ..-++.|.++..+.                            .++.+..++||+|++++-.    .++|..+   ..
T Consensus       175 lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~ADIvv~AvG~----p~~i~~d---~v  218 (283)
T COG0190         175 LL-LNANATVTVCHSRT----------------------------KDLASITKNADIVVVAVGK----PHFIKAD---MV  218 (283)
T ss_pred             HH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCEEEEecCC----ccccccc---cc
Confidence            98 57899999876532                            3678889999999999964    5666643   46


Q ss_pred             CCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHH
Q 015895          263 KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKW  327 (398)
Q Consensus       263 k~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~e  327 (398)
                      |+|+++||++--.+-+          +++   .=||-.++.       ....-.+||=-||--.-
T Consensus       219 k~gavVIDVGinrv~~----------~kl---~GDVdf~~v-------~~~a~~iTPVPGGVGPm  263 (283)
T COG0190         219 KPGAVVIDVGINRVND----------GKL---VGDVDFDSV-------KEKASAITPVPGGVGPM  263 (283)
T ss_pred             cCCCEEEecCCccccC----------Cce---EeeccHHHH-------HHhhcccCCCCCccCHH
Confidence            8999999998744322          444   446643321       22234688887775443

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.73  E-value=0.00097  Score=65.28  Aligned_cols=169  Identities=17%  Similarity=0.230  Sum_probs=106.3

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~---~--~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++.+....++ ..+++|+.+.+.   +  ..|++++..+  ..+++ +++++.+-.  |=|-    |+....+..
T Consensus        57 a~~~Gi~~~~~~l~~-~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g~  129 (294)
T PRK14187         57 AEMLGLRSETILLPS-TISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE--KDVD----GFHNENVGR  129 (294)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhHHH
Confidence            445688877665443 357777766553   2  3689999765  34554 344444332  3221    111111111


Q ss_pred             hhhcCceEEecC-CCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895          105 ANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (398)
Q Consensus       105 ~~~~gI~V~n~p-~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (398)
                            ...+.. ......+|.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|.
T Consensus       130 ------l~~g~~~~~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla~  178 (294)
T PRK14187        130 ------LFTGQKKNCLIPCTPKGCLYLI----K---------------------TITRNLSGSDAVVIGRSNIVGKPMAC  178 (294)
T ss_pred             ------HhCCCCCCCccCcCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence                  111111 124455666555443    1                     12357999999999995 57999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ...++.|..+....                            .++.+..++||+|+++++-    .+++..+.+   
T Consensus       179 lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~ADIvVsAvGk----p~~i~~~~i---  222 (294)
T PRK14187        179 LL-LGENCTVTTVHSAT----------------------------RDLADYCSKADILVAAVGI----PNFVKYSWI---  222 (294)
T ss_pred             HH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHHc---
Confidence            98 68899998875422                            3688899999999999985    556776554   


Q ss_pred             CCCcEEEEcCCCc
Q 015895          263 KKEAILVNCSRGP  275 (398)
Q Consensus       263 k~gailIN~aRG~  275 (398)
                      |+|+++||++-..
T Consensus       223 k~gaiVIDVGin~  235 (294)
T PRK14187        223 KKGAIVIDVGINS  235 (294)
T ss_pred             CCCCEEEEecccc
Confidence            6999999997643

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.73  E-value=0.00052  Score=67.66  Aligned_cols=134  Identities=13%  Similarity=0.212  Sum_probs=92.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV~l~~  244 (398)
                      ++|||||+|++|+-.|+.+ -..|..|+.+||..-...+.          ..|     ....+.+.+++ +..|+|.+|+
T Consensus        53 l~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~----------~yg-----~~~ft~lhdlcerhpDvvLlct  116 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE----------KYG-----SAKFTLLHDLCERHPDVVLLCT  116 (480)
T ss_pred             eEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH----------Hhc-----ccccccHHHHHhcCCCEEEEEe
Confidence            4699999999999999998 68899999999876332211          112     22345667765 6799999998


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC-----CCCCCCCCCceEEcC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-----MKPGLSEMKNAIVVP  319 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~-----~~~~L~~~~nvilTP  319 (398)
                      .. ..+..++-.--++++|.|+++++.-.-....-.++.+-|-+.      .|....-|.     .++....+|=|+.-=
T Consensus       117 si-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydkv  189 (480)
T KOG2380|consen  117 SI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDKV  189 (480)
T ss_pred             hh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEEe
Confidence            64 345555544567889999999999888877777777777654      233333332     123455677666654


Q ss_pred             CCC
Q 015895          320 HIA  322 (398)
Q Consensus       320 Hia  322 (398)
                      .++
T Consensus       190 Rig  192 (480)
T KOG2380|consen  190 RIG  192 (480)
T ss_pred             ecc
Confidence            444

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.68  E-value=0.0019  Score=63.22  Aligned_cols=169  Identities=17%  Similarity=0.224  Sum_probs=105.6

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|.+++....++ ..+++|+.+.+..     ..|++++..+  ..+++ ++++..+-.  |=|-    |+..+.+.
T Consensus        55 ~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~g  127 (293)
T PRK14185         55 ACEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--KDVD----GFHPINVG  127 (293)
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcC----CCCHhhHH
Confidence            3445688876655444 3577887765531     4689999764  34443 344444332  3221    22212111


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (398)
                      ..      ..+.+ +....++.-++.++    +                     +.+.++.||++.|||-+ .+|+.+|.
T Consensus       128 ~l------~~~~~-~~~PcTp~av~~lL----~---------------------~~~i~l~GK~vvViGrS~iVGkPla~  175 (293)
T PRK14185        128 RM------SIGLP-CFVSATPNGILELL----K---------------------RYHIETSGKKCVVLGRSNIVGKPMAQ  175 (293)
T ss_pred             HH------hCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccchHHHHH
Confidence            11      11222 24566666666554    1                     12357999999999995 57999999


Q ss_pred             HHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895          183 MMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (398)
Q Consensus       183 ~la~~f----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~  258 (398)
                      .| ..-    ++.|..+....                            .++.+..++||+|+++++-    .++|..+ 
T Consensus       176 lL-~~~~~~~~aTVtvchs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~i~~~-  221 (293)
T PRK14185        176 LM-MQKAYPGDCTVTVCHSRS----------------------------KNLKKECLEADIIIAALGQ----PEFVKAD-  221 (293)
T ss_pred             HH-HcCCCCCCCEEEEecCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHH-
Confidence            88 444    78888764321                            3688889999999999985    4567654 


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 015895          259 LATMKKEAILVNCSRGP  275 (398)
Q Consensus       259 ~~~mk~gailIN~aRG~  275 (398)
                        ..|+|+++||++--.
T Consensus       222 --~vk~gavVIDvGin~  236 (293)
T PRK14185        222 --MVKEGAVVIDVGTTR  236 (293)
T ss_pred             --HcCCCCEEEEecCcc
Confidence              457999999998643

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.67  E-value=0.0013  Score=68.76  Aligned_cols=148  Identities=14%  Similarity=0.162  Sum_probs=89.1

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      ++|+|||+|.+|..+|-.|+. +.|.+|++||...... +.+...        ....+.+ .. ........+.++.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~-~~-~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQ-CR-GKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHH-hh-cCCEEEEcCHHHHHhc
Confidence            579999999999999998853 4579999999877542 221110        0000000 00 0001122457788899


Q ss_pred             CCEEEEccCCChh-----------hhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec-cCCCC
Q 015895          237 ADVISLHPVLDKT-----------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDE  302 (398)
Q Consensus       237 aDiV~l~~Plt~~-----------T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD-V~~~E  302 (398)
                      ||++++|+|....           ...+.  -++.-..+++|.++|.-|.-.+=-++.+...+.+.. .|.-.. +|.+|
T Consensus        79 advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PE  157 (473)
T PLN02353         79 ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPE  157 (473)
T ss_pred             CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCC
Confidence            9999999863221           11222  234556679999999999977666677777777521 121112 24566


Q ss_pred             CCCC----CCCCCCCceEE
Q 015895          303 PYMK----PGLSEMKNAIV  317 (398)
Q Consensus       303 P~~~----~~L~~~~nvil  317 (398)
                      =+..    ..++..|+||+
T Consensus       158 rl~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        158 FLAEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             ccCCCCcccccCCCCEEEE
Confidence            4421    24677777764

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.65  E-value=0.0021  Score=63.00  Aligned_cols=169  Identities=18%  Similarity=0.215  Sum_probs=104.5

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~~-----~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++++....++ ..+++|+.+.+..     +.|++++..+  ..+++. +++..+-.  |=|-    |+..+.+..
T Consensus        58 ~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~g~  130 (297)
T PRK14168         58 AHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--KDVD----GFHPVNVGR  130 (297)
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----ccChhhHHH
Confidence            345688876655443 3578887766542     4689999865  344433 44443322  2221    111111111


Q ss_pred             hhhcCceEEecC-CCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHHH
Q 015895          105 ANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYAR  182 (398)
Q Consensus       105 ~~~~gI~V~n~p-~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~  182 (398)
                            ...+.. ......++.-++.++-                         +.+.++.||++.|||-+ .+|+.+|.
T Consensus       131 ------l~~~~~~~~~~PcTp~avi~lL~-------------------------~~~i~l~Gk~vvViGrS~iVGkPla~  179 (297)
T PRK14168        131 ------LMIGGDEVKFLPCTPAGIQEMLV-------------------------RSGVETSGAEVVVVGRSNIVGKPIAN  179 (297)
T ss_pred             ------HhcCCCCCCCcCCCHHHHHHHHH-------------------------HhCCCCCCCEEEEECCCCcccHHHHH
Confidence                  111111 2345556665555441                         12468999999999985 57999999


Q ss_pred             HHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895          183 MMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (398)
Q Consensus       183 ~la~~f----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~  258 (398)
                      .| ..-    ++.|..+....                            .++.+..++||+|++++.-    .++|..+.
T Consensus       180 lL-~~~~~~~~atVtv~hs~T----------------------------~~l~~~~~~ADIvVsAvGk----p~~i~~~~  226 (297)
T PRK14168        180 MM-TQKGPGANATVTIVHTRS----------------------------KNLARHCQRADILIVAAGV----PNLVKPEW  226 (297)
T ss_pred             HH-HhcccCCCCEEEEecCCC----------------------------cCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence            88 444    78888764321                            3688889999999999964    45676654


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 015895          259 LATMKKEAILVNCSRGP  275 (398)
Q Consensus       259 ~~~mk~gailIN~aRG~  275 (398)
                         .|+|+++||++.-.
T Consensus       227 ---ik~gavVIDvGin~  240 (297)
T PRK14168        227 ---IKPGATVIDVGVNR  240 (297)
T ss_pred             ---cCCCCEEEecCCCc
Confidence               47999999998644

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.63  E-value=0.00061  Score=66.36  Aligned_cols=130  Identities=15%  Similarity=0.151  Sum_probs=77.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|+|||.|.||+.+|..|+ ..|.+|..++++.+. .+...+. +-... .+..........+.+++ +.+|+|++++|
T Consensus         1 m~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~k   75 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNEN-GLRLE-DGEITVPVLAADDPAEL-GPQDLVILAVK   75 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHHc-CCccc-CCceeecccCCCChhHc-CCCCEEEEecc
Confidence            47999999999999999984 678999999986543 2221110 00000 01000001123456665 89999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEE--eccCCCCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG--LDVFEDEP  303 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAa--lDV~~~EP  303 (398)
                      . .++..++ +.....+.+++.+|.+.-| +-.++.+.+.+....+.++.  ..++..+|
T Consensus        76 ~-~~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p  132 (304)
T PRK06522         76 A-YQLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP  132 (304)
T ss_pred             c-ccHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence            5 3455544 3344456778888888776 33355666666655554432  23344455

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.62  E-value=0.00024  Score=70.06  Aligned_cols=96  Identities=13%  Similarity=0.098  Sum_probs=68.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ...++++|||.|.+|+..++.++..++ -+|.+|+|++.. .+.+.+.+    ...+   .... ..+.++++++||+|+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~----~~~~---~~~~-~~~~~~av~~aDiVi  193 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHA----RALG---PTAE-PLDGEAIPEAVDLVV  193 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CeeE-ECCHHHHhhcCCEEE
Confidence            456799999999999999998744456 479999998754 23333222    1111   1111 367899999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      .++|.+   .-+|..    .+|||+.++.++.-
T Consensus       194 taT~s~---~Pl~~~----~~~~g~hi~~iGs~  219 (304)
T PRK07340        194 TATTSR---TPVYPE----AARAGRLVVAVGAF  219 (304)
T ss_pred             EccCCC---CceeCc----cCCCCCEEEecCCC
Confidence            999953   466654    26999999999853

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.61  E-value=0.00066  Score=62.19  Aligned_cols=107  Identities=19%  Similarity=0.165  Sum_probs=64.8

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhc
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLRE  236 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~sl~ell~~  236 (398)
                      ..++++++.|+|. |.+|+.+++.+ ...|.+|..++|+... .+.+.+.+..   ..+. ....   ....++.+.+++
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l-~~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~~-~~~~~~~~~~~~~~~~~~~   97 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLL-AREGARVVLVGRDLER-AQKAADSLRA---RFGE-GVGAVETSDDAARAAAIKG   97 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHHHh---hcCC-cEEEeeCCCHHHHHHHHhc
Confidence            4688999999995 99999999998 4678899999987643 2222221100   0010 0100   111234577889


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v  277 (398)
                      +|+|+.+.|....+  .+.  .-...+++.+++|+.+...+
T Consensus        98 ~diVi~at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078          98 ADVVFAAGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CCEEEECCCCCcee--chh--hhcccCceeEEEEccCCCCC
Confidence            99999999864321  111  11123456777777776543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.59  E-value=0.00045  Score=69.32  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=71.0

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (398)
Q Consensus       177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~  256 (398)
                      |..+|++| ...|.+|++||++.....+...+.    +...|     .....+..+++++||+|++++|....++.++ .
T Consensus        32 G~~MA~~L-a~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~  100 (342)
T PRK12557         32 GSRMAIEF-AEAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K  100 (342)
T ss_pred             HHHHHHHH-HhCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence            78999998 467999999999875311100110    11222     2234577888999999999999655477777 4


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcH-HHHHHHHh
Q 015895          257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK  287 (398)
Q Consensus       257 ~~~~~mk~gailIN~aRG~~vde-~aL~~aL~  287 (398)
                      +....+++|.++||++.++.... +.+.+.+.
T Consensus       101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            67788999999999999987665 56666664

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.53  E-value=0.00031  Score=70.19  Aligned_cols=102  Identities=28%  Similarity=0.372  Sum_probs=71.0

Q ss_pred             cccccCCCeEEEEec-ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      .|.++.||++.|+|. |.||+.+++.|+...| .+++.++|+... ...+...+       .     .....++++.+.+
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~el-------~-----~~~i~~l~~~l~~  215 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAEL-------G-----GGKILSLEEALPE  215 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHHh-------c-----cccHHhHHHHHcc
Confidence            345799999999999 8999999999843455 489999987543 22211111       0     0112468899999


Q ss_pred             CCEEEEccCCChhhhh-hccHHHHhcCCCCcEEEEcCCCchhcH
Q 015895          237 ADVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~-li~~~~~~~mk~gailIN~aRG~~vde  279 (398)
                      +|+|+.+.-.   ... .++.+.+   +++.++||.|+..=||.
T Consensus       216 aDiVv~~ts~---~~~~~I~~~~l---~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        216 ADIVVWVASM---PKGVEIDPETL---KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CCEEEECCcC---CcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence            9999877643   234 3777644   89999999999875653

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.52  E-value=0.002  Score=70.53  Aligned_cols=130  Identities=12%  Similarity=0.151  Sum_probs=83.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~--------~~~~~~~sl~ell  234 (398)
                      ++|+|||.|.||+.+|..++...|++|+.||+++......  .. +.+.. ..+.+...        .......+++ .+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  382 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDK-GVKRRHMTPAERDNQMALITGTTDYR-GF  382 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence            5799999999999999986434799999999987542111  00 01110 11111100        0112234564 57


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~  300 (398)
                      +.||+|+=++|-+.+.+.-+-++.=+.++++++|...+.+  +.-.+|.++++.- =.-.++--|.
T Consensus       383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~~g~Hffn  445 (699)
T TIGR02440       383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRP-ENVIGLHYFS  445 (699)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCc-ccEEEEecCC
Confidence            8999999999988888887778888889999888765554  3445666766542 2345565553

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.51  E-value=0.00053  Score=63.10  Aligned_cols=103  Identities=18%  Similarity=0.238  Sum_probs=66.7

Q ss_pred             CcccccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 015895          156 NLFVGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (398)
Q Consensus       156 ~~~~g~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell  234 (398)
                      ....|.++.||++.|||-+. +|+.+|..| ..-|+.|..+|.+.-.....   .  ...+... .+. -....++.+.+
T Consensus        53 ~~~~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~~~~---~--~~~~hs~-t~~-~~~~~~l~~~~  124 (197)
T cd01079          53 ILPYGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQVFTR---G--ESIRHEK-HHV-TDEEAMTLDCL  124 (197)
T ss_pred             ccccCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCccccccc---c--ccccccc-ccc-cchhhHHHHHh
Confidence            33457799999999999965 699999988 57899999997532110000   0  0000000 000 00001277899


Q ss_pred             hcCCEEEEccCCChhhhhh-ccHHHHhcCCCCcEEEEcCC
Q 015895          235 READVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR  273 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~l-i~~~~~~~mk~gailIN~aR  273 (398)
                      ++||+|+++++-    .++ |..+.   .|+|+++||++-
T Consensus       125 ~~ADIVIsAvG~----~~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         125 SQSDVVITGVPS----PNYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             hhCCEEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence            999999999985    444 66544   479999999984

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.51  E-value=0.0021  Score=70.57  Aligned_cols=131  Identities=14%  Similarity=0.110  Sum_probs=85.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~  235 (398)
                      ++|+|||.|.||..+|..++...|++|..||++......  ......-....+.+...        .......++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            679999999999999998743679999999998754211  11111000011111100        011223455 4569


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~  300 (398)
                      .||+|+=++|-+.+.+.-+-++.=+.++++++|...+.+  +.-..|.+.++.- =..+++--|.
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~ig~Hff~  450 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARP-EQVIGLHYFS  450 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcc-cceEEEecCC
Confidence            999999999988888877777777889999999776655  4456677766542 2446666663

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.50  E-value=0.0016  Score=71.78  Aligned_cols=146  Identities=18%  Similarity=0.173  Sum_probs=93.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HH-hhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FV-TAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~-~~~~~~~~~~~~~~--------~~~~~~~sl~ell  234 (398)
                      ++|+|||.|.||..+|..++ ..|++|+.||++.......  .. +.+.... ..+...        .......+++ .+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~-~~g~~~~~~~~~~~~~i~~~~~~~-~~  412 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKV-KRKKITSLERDSILSNLTPTLDYS-GF  412 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence            57999999999999999875 6699999999987642111  11 1111111 111100        0112234565 46


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n  314 (398)
                      ++||+|+=++|-+-+.+.-+-++.=+.++++++|...+.+  ++-.+|.+.++.- =.-.++.-|.  |....||.+   
T Consensus       413 ~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~ig~Hff~--P~~~m~LvE---  484 (737)
T TIGR02441       413 KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRP-EKVIGMHYFS--PVDKMQLLE---  484 (737)
T ss_pred             ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCc-cceEEEeccC--CcccCceEE---
Confidence            9999999999988888887878888889999988654443  4556777777643 2456666664  222223443   


Q ss_pred             eEEcCCCC
Q 015895          315 AIVVPHIA  322 (398)
Q Consensus       315 vilTPHia  322 (398)
                      |+-+|+.+
T Consensus       485 vv~g~~Ts  492 (737)
T TIGR02441       485 IITHDGTS  492 (737)
T ss_pred             EeCCCCCC
Confidence            56666554

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.48  E-value=0.0024  Score=70.10  Aligned_cols=146  Identities=18%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~--------~~~~~~~sl~ell  234 (398)
                      ++|+|||.|.||..+|..++ ..|++|+.||++......  ...+ .+. ...+.+...        .......++++ +
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~-~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  390 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLN-KQVERGKIDGAKMAGVLSSIRPTLDYAG-F  390 (715)
T ss_pred             ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHH-HHHHcCCCChhhHHHHHhCeEEeCCHHH-h
Confidence            68999999999999999875 679999999998764211  1111 111 011111110        01122345644 6


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n  314 (398)
                      +.||+|+=++|-+.+.+.-+-++.=+.++++++|-..+.+  +.-..|.++++.. =.-.++--|.  |+...||.+   
T Consensus       391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~~g~Hff~--P~~~~~lVE---  462 (715)
T PRK11730        391 ERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRP-ENFCGMHFFN--PVHRMPLVE---  462 (715)
T ss_pred             cCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCC-ccEEEEecCC--cccccceEE---
Confidence            9999999999988888888878888889999998766554  3446677777542 2345555553  222223433   


Q ss_pred             eEEcCCCC
Q 015895          315 AIVVPHIA  322 (398)
Q Consensus       315 vilTPHia  322 (398)
                      |+-.||.+
T Consensus       463 vv~g~~T~  470 (715)
T PRK11730        463 VIRGEKTS  470 (715)
T ss_pred             eeCCCCCC
Confidence            55555544

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.48  E-value=0.00078  Score=67.61  Aligned_cols=109  Identities=19%  Similarity=0.312  Sum_probs=66.5

Q ss_pred             eEEEEecChhHHHHHHHHHh-c------CCcEEEEEcCCh---hhHHHHHHhhhhhhhhhc-CC-CCccccccCCHHHHh
Q 015895          167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVL  234 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~-~------fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~sl~ell  234 (398)
                      +|+|||.|+.|.++|..++. +      |+.+|..|.+..   .....+....-....+.. +. .+.......++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            48999999999999998854 2      448999998732   111111111000000000 10 011122235799999


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v  277 (398)
                      +.||+|++++|. ...+.++ ++.-..++++..+|+++-|=-.
T Consensus        81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~  121 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEV  121 (342)
T ss_pred             hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCccc
Confidence            999999999994 3344443 4444567889999999887433

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.42  E-value=0.00079  Score=67.04  Aligned_cols=97  Identities=15%  Similarity=0.142  Sum_probs=66.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..++++|||.|.+|+..++.++...+. +|.+|||++... +.+.+.+    ....  +.....+.++++++++||+|++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~----~~~~--~~~~~~~~~~~~~~~~aDiVi~  198 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEI----QSKF--NTEIYVVNSADEAIEEADIIVT  198 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhc--CCcEEEeCCHHHHHhcCCEEEE
Confidence            467899999999999988776434554 799999987542 3322221    1110  1112235678999999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      ++|..   .-++.    +.+|+|+.++.++.-
T Consensus       199 aT~s~---~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        199 VTNAK---TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             ccCCC---CcchH----HhcCCCcEEEecCCC
Confidence            99954   34443    566999999998763

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.41  E-value=0.0012  Score=62.41  Aligned_cols=116  Identities=21%  Similarity=0.292  Sum_probs=68.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcC----------ChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL----------YQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      .+++|+++.|.|+|++|+.+|+.| ..+|++|++ .|.          +.. ++..+.+..+. +.  . .+ ... ..+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~-~l~~~~~~~g~-l~--~-~~-~~~-~~~   98 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVP-ALLAYKKEHGS-VL--G-FP-GAE-RIT   98 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHH-HHHHHHHhcCC-cc--c-CC-Cce-ecC
Confidence            468999999999999999999998 689999994 444          222 22111111100 00  0 00 000 112


Q ss_pred             HHHH-hhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          230 MDEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       230 l~el-l~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      .+++ -.+||+++-|.+     .+.|+.+...+++ =.+++-.+-+.+ . ..-.+.|++..+.
T Consensus        99 ~~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~  154 (227)
T cd01076          99 NEELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL  154 (227)
T ss_pred             CccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence            2232 247899988876     4567777777777 335555555555 3 4455667666553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.41  E-value=0.00047  Score=67.10  Aligned_cols=76  Identities=20%  Similarity=0.244  Sum_probs=52.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.++++.|+|.|.+|+.+++.| ...| .+|.+++|+.... +.+.+.+.    ...  ...+  ..++.+.+..+|+|
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~~----~~~--~~~~--~~~~~~~~~~~Div  189 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLFG----ALG--KAEL--DLELQEELADFDLI  189 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHhh----hcc--ceee--cccchhccccCCEE
Confidence            58899999999999999999998 5889 7999999987542 22222111    000  0111  11345667889999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      +.++|..
T Consensus       190 InaTp~g  196 (278)
T PRK00258        190 INATSAG  196 (278)
T ss_pred             EECCcCC
Confidence            9999964

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.40  E-value=0.0012  Score=66.88  Aligned_cols=111  Identities=21%  Similarity=0.277  Sum_probs=66.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhc------CCcEEEEEcCChhh----HHHHHHhhhhhhhhhc-C-CCCccccccCCHHH
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT----RLEKFVTAYGQFLKAN-G-EQPVTWKRASSMDE  232 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~------fG~~V~~~d~~~~~----~~~~~~~~~~~~~~~~-~-~~~~~~~~~~sl~e  232 (398)
                      .++|+|||.|+.|.++|..++..      ||.+|..|.++..-    ..+...+ ........ + ..+.......++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~-~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINT-KHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHh-cCCCcccCCCCcCCCceEEecCHHH
Confidence            35899999999999999998643      45788888776531    1111100 00000000 0 01111222457889


Q ss_pred             HhhcCCEEEEccCCChhhhhhccHHHHh--cCCCCcEEEEcCCCchhc
Q 015895          233 VLREADVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVID  278 (398)
Q Consensus       233 ll~~aDiV~l~~Plt~~T~~li~~~~~~--~mk~gailIN~aRG~~vd  278 (398)
                      +++.||+|++++|- ...+.++ ++.-.  .+++++++|+++-|=-.+
T Consensus        90 av~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         90 AVEDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             HHhcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence            99999999999994 3344443 22223  466788999998874433

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.39  E-value=0.00084  Score=66.63  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=68.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      -++++|||.|..++.-++.+...+. -+|.+|+|++... +.+.+.    ++..+   ..+..+.+.+++++.||+|+.+
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~~---~~v~~~~~~~~av~~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQALG---FAVNTTLDAAEVAHAANLIVTT  199 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhcC---CcEEEECCHHHHhcCCCEEEEe
Confidence            4689999999999999987754444 3899999998653 222221    22211   2233357899999999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|   .+.-+|+.+.   +|+|+.++.++.
T Consensus       200 T~---s~~P~~~~~~---l~~G~hi~~iGs  223 (315)
T PRK06823        200 TP---SREPLLQAED---IQPGTHITAVGA  223 (315)
T ss_pred             cC---CCCceeCHHH---cCCCcEEEecCC
Confidence            87   4457776654   579999999874

>PRK06046 alanine dehydrogenase; Validated

Probab=97.39  E-value=0.00078  Score=67.11  Aligned_cols=95  Identities=20%  Similarity=0.288  Sum_probs=64.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      -+++||||.|.+|+..++.++...+. +|.+||++.... +.+.+.+    .+.  .+..+..+.+++++++ +|+|+++
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~----~~~--~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERM----SSV--VGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence            35899999999999999887534454 678899987542 2222221    110  0111233467899887 9999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|.   +.-++..+.   +|+|+.+..++.
T Consensus       201 Tps---~~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        201 TPS---RKPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             cCC---CCcEecHHH---cCCCCEEEecCC
Confidence            995   346676654   489999888874

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.38  E-value=0.0011  Score=65.52  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|.|||.|.-|.++|+.++ .-|.+|..|.+++....+ ..+. -+...-..-..+.......+++++++.||+|++.+
T Consensus         2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~-i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~av   79 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAE-INETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAV   79 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHH-HHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEEC
Confidence            57999999999999999984 667889989887643211 1110 00000000111222333468999999999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd  278 (398)
                      |. ...+..+. +.-..+++++.+|+++-|=-.+
T Consensus        80 Ps-~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          80 PS-QALREVLR-QLKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             Ch-HHHHHHHH-HHhhhccCCCeEEEEeccccCC
Confidence            94 34444432 2335678999999999875443

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.37  E-value=0.00049  Score=66.98  Aligned_cols=91  Identities=27%  Similarity=0.319  Sum_probs=64.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      -|.||||+|||||+=|.+=|..| +..|.+|++=-+..+..-+.        ...     .++. +.+.+|+.++||+|.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k--------A~~-----dGf~-V~~v~ea~k~ADvim   79 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK--------AKE-----DGFK-VYTVEEAAKRADVVM   79 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH--------HHh-----cCCE-eecHHHHhhcCCEEE
Confidence            58999999999999999999998 78898876544433221111        111     2232 468999999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEE
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAIL  268 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gail  268 (398)
                      +.+|.. .-..++..+.-..||+|+.|
T Consensus        80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL  105 (338)
T COG0059          80 ILLPDE-QQKEVYEKEIAPNLKEGAAL  105 (338)
T ss_pred             EeCchh-hHHHHHHHHhhhhhcCCceE
Confidence            999963 33455556677778888743

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.35  E-value=0.0012  Score=61.17  Aligned_cols=107  Identities=16%  Similarity=0.249  Sum_probs=69.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHH-H---------HhhhhhhhhhcCCCCcccc-
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F---------VTAYGQFLKANGEQPVTWK-  225 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~---~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~-  225 (398)
                      ..|..++|+|+|+|.+|+.+|+.|+ ..|. ++..+|++   .+...++ +         .+.....+.+.... ..+. 
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~-~~i~~   94 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY-TEIEA   94 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC-CEEEE
Confidence            4588899999999999999999985 6787 69999987   2111000 0         00001111111100 0111 


Q ss_pred             -----ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          226 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       226 -----~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                           ....++++++++|+|+-+ ..+.+++.++..+....++...++..
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                 112356778899999999 57789999999988888887666664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.34  E-value=0.0077  Score=60.74  Aligned_cols=165  Identities=19%  Similarity=0.235  Sum_probs=115.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el---l~~aDiV~l  242 (398)
                      ..||+||+|-||+.+|..+ ...|.+|.+|+|+.+... .+.+.       .+.. .......+++|+   ++.=--|.+
T Consensus         4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~ktd-~f~~~-------~~~~-k~i~~~~sieefV~~Le~PRkI~l   73 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKTD-EFLAE-------RAKG-KNIVPAYSIEEFVASLEKPRKILL   73 (473)
T ss_pred             cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHHH-HHHHh-------CccC-CCccccCcHHHHHHHhcCCceEEE
Confidence            4699999999999999998 589999999999987532 23221       1100 012233567766   455566766


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia  322 (398)
                      .+-...-....| ++.+..|.+|-++||-+-..--|+..-.++|....|...+.-|...|--.   +.. |.+     +-
T Consensus        74 MVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA---~~G-PSi-----Mp  143 (473)
T COG0362          74 MVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA---RHG-PSI-----MP  143 (473)
T ss_pred             EEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc---ccC-CCc-----CC
Confidence            665422123333 56888899999999999999999999999999999999999999888531   222 322     33


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 015895          323 SASKWTREGMATLAALNVLGKIKGYPIWG  351 (398)
Q Consensus       323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~~~  351 (398)
                      |.+.++.+.+.-+ .+.|.+-..|+|.-.
T Consensus       144 GG~~eay~~v~pi-l~~IaAk~~g~pCc~  171 (473)
T COG0362         144 GGQKEAYELVAPI-LTKIAAKVDGEPCCT  171 (473)
T ss_pred             CCCHHHHHHHHHH-HHHHHhhcCCCCcee
Confidence            6678888877655 466777677877543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.33  E-value=0.00067  Score=67.21  Aligned_cols=99  Identities=21%  Similarity=0.216  Sum_probs=59.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      +++||||.|..|+.-++.++.-++. +|.+|+|++.. .+.+.+.    +..   ....+..+.+.+++++.||+|+.++
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~----~~~---~~~~v~~~~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAAR----LRD---LGVPVVAVDSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHH----HHC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHh----hcc---ccccceeccchhhhcccCCEEEEcc
Confidence            4899999999999999877555664 89999998754 2333322    222   1233445678999999999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      |.+..+ -+++.+   .+|+|+.++.++....
T Consensus       201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence            864432 566544   5789999999987543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.33  E-value=0.005  Score=67.65  Aligned_cols=146  Identities=18%  Similarity=0.165  Sum_probs=90.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCC--------CccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQ--------PVTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~--------~~~~~~~~sl~ell  234 (398)
                      ++|+|||.|.||..+|..++ ..|++|+.||++......  .... .+....+ .+..        ........+++ .+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~-~~  390 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVE-RGRITPAKMAGVLNGITPTLSYA-GF  390 (714)
T ss_pred             ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence            57999999999999999885 679999999998765221  1111 1111111 1100        00112234554 46


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n  314 (398)
                      +.||+|+=++|-+-+.+.-+-++.=+.++++++|-..+.+  ++-.+|..+++.- =.-.++=-|.  |...-||.+   
T Consensus       391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~p-~r~ig~Hff~--P~~~~~lvE---  462 (714)
T TIGR02437       391 DNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKRP-ENFCGMHFFN--PVHRMPLVE---  462 (714)
T ss_pred             cCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCc-ccEEEEecCC--CcccCceEe---
Confidence            9999999999988888877777777889999998766554  4456677776542 2334444443  222233443   


Q ss_pred             eEEcCCCC
Q 015895          315 AIVVPHIA  322 (398)
Q Consensus       315 vilTPHia  322 (398)
                      |+-+++.+
T Consensus       463 vv~g~~Ts  470 (714)
T TIGR02437       463 VIRGEKSS  470 (714)
T ss_pred             ecCCCCCC
Confidence            55555544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.31  E-value=0.0012  Score=66.23  Aligned_cols=104  Identities=15%  Similarity=0.142  Sum_probs=64.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CC--CccccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQ--PVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ++|+|||.|.+|..+|..|+ ..| +|..|.+++.. .+...+. .......+ ..  +.......++++.++.+|+|++
T Consensus         8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~-~~~i~~~-~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVil   83 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAET-ADDINDN-HRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVM   83 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHH-HHHHHhc-CCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEE
Confidence            57999999999999999985 556 57778766533 2211110 00000000 00  1111223578888899999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      ++|. ..++..+ ++.-..++++..+|++.-|=
T Consensus        84 avps-~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         84 GVPS-HGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             EeCH-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence            9993 4455554 33445578888999998863

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.30  E-value=0.0017  Score=64.44  Aligned_cols=105  Identities=25%  Similarity=0.316  Sum_probs=63.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CC-CCccccccCCHHHHh-hcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVL-READVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~sl~ell-~~aDiV~l  242 (398)
                      ++|+|||.|.||..+|..| ...|.+|..|+|+... .+..... ....... +. .+.......++++.+ ..+|+|++
T Consensus         1 MkI~IiGaGa~G~ala~~L-~~~g~~V~l~~r~~~~-~~~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliii   77 (326)
T PRK14620          1 MKISILGAGSFGTAIAIAL-SSKKISVNLWGRNHTT-FESINTK-RKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIIL   77 (326)
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCeEEEEecCHHH-HHHHHHc-CCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEE
Confidence            3699999999999999998 4678999999997642 2211110 0000000 00 011111234667766 58999999


Q ss_pred             ccCCChhhhhhccHHHHh-cCCCCcEEEEcCCCc
Q 015895          243 HPVLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~-~mk~gailIN~aRG~  275 (398)
                      ++|. .++..++. +... .++++..+|.+.-|-
T Consensus        78 avks-~~~~~~l~-~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         78 AVPT-QQLRTICQ-QLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             EeCH-HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence            9994 44555543 2333 567777777776663

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.28  E-value=0.0014  Score=65.21  Aligned_cols=96  Identities=11%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..++++|||.|.+|+..++.++..++ -+|.+|+|+.... +.+.+.+    ...  ....+....++++.+++||+|+.
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a-~~~a~~~----~~~--~g~~v~~~~~~~~av~~aDiVvt  200 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQL----SSL--LGIDVTAATDPRAAMSGADIIVT  200 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhccCCEEEE
Confidence            35789999999999999998743466 4799999987642 2222221    111  01122334678999999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      ++|.+   .-+|..+.   +|+|+.+..++
T Consensus       201 aT~s~---~p~i~~~~---l~~g~~i~~vg  224 (326)
T TIGR02992       201 TTPSE---TPILHAEW---LEPGQHVTAMG  224 (326)
T ss_pred             ecCCC---CcEecHHH---cCCCcEEEeeC
Confidence            99853   45666543   68998887765

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.27  E-value=0.0009  Score=62.34  Aligned_cols=95  Identities=19%  Similarity=0.251  Sum_probs=64.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sl~ell~~aDi  239 (398)
                      .++.|+++.|||.|.+|..-++.| ..+|++|.+++|...+....+.+        .+  ...+.. ... .+.+..+|+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~--~i~~~~~~~~-~~dl~~~~l   72 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QG--GITWLARCFD-ADILEGAFL   72 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cC--CEEEEeCCCC-HHHhCCcEE
Confidence            468999999999999999999998 58999999999987655443211        11  111211 112 345688999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      |+.++.. ++    +|......++...++||++
T Consensus        73 Vi~at~d-~~----ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        73 VIAATDD-EE----LNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             EEECCCC-HH----HHHHHHHHHHHcCCEEEEC
Confidence            8888664 22    3445555566666777754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.25  E-value=0.0033  Score=60.54  Aligned_cols=127  Identities=19%  Similarity=0.116  Sum_probs=70.8

Q ss_pred             HHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895          180 YARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (398)
Q Consensus       180 vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~  258 (398)
                      +|+.|+ +++..+|++||+++......         ...|..   .....+ .+.+++||+|++|+|. ..+..++ ++.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a---------~~~g~~---~~~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~   65 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAA---------LELGII---DEASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEI   65 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHH---------HHTTSS---SEEESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHH---------HHCCCe---eeccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHh
Confidence            355552 24458999999998753221         112221   122223 5678999999999995 3455554 556


Q ss_pred             HhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec-cCCCCCC----CCCCCCCCCceEEcCCCC
Q 015895          259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDEPY----MKPGLSEMKNAIVVPHIA  322 (398)
Q Consensus       259 ~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD-V~~~EP~----~~~~L~~~~nvilTPHia  322 (398)
                      ...+++|++++|++.-.---.+++.+.+..+ ....+.= -|.+|-.    ....|+.-.++++||+-.
T Consensus        66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            6679999999999886654445555555522 2222221 2333321    123688888999999865

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.22  E-value=0.0037  Score=62.11  Aligned_cols=131  Identities=17%  Similarity=0.255  Sum_probs=73.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      +..++|+|||.|.||..+|..++ ..| .++..||...........+.... ....+ .........+.+ .+++||+|+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~~-~~~~~-~~~~i~~~~d~~-~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKHF-STLVG-SNINILGTNNYE-DIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhhh-ccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence            45679999999999999998863 445 68999998764321111111100 00011 111122224666 679999999


Q ss_pred             Ecc--CCCh-hhh--------hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh--cCCccEEE--ec
Q 015895          242 LHP--VLDK-TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD  297 (398)
Q Consensus       242 l~~--Plt~-~T~--------~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~--~g~i~gAa--lD  297 (398)
                      ++.  |..+ .++        .++-  .+.+....|.+++|+++-..-+-...+.+.-.  ..++.|.+  ||
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence            998  4433 111        1110  12344456788999986543333334444322  35666655  66

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.20  E-value=0.0019  Score=64.95  Aligned_cols=96  Identities=17%  Similarity=0.225  Sum_probs=65.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      -++++|||.|..++.-++.+..-+.. +|.+|+|++... +.+.+.    +...   ...+..+.++++++++||+|+.+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~----~~~~---~~~v~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARN----LAGP---GLRIVACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHH----HHhc---CCcEEEeCCHHHHHhcCCEEEEe
Confidence            36899999999999988766545554 799999997642 222222    2211   12233457899999999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|.+ +..-+|..+   .+|+|+.++-++
T Consensus       201 T~S~-~~~Pvl~~~---~lkpG~hV~aIG  225 (346)
T PRK07589        201 TADK-TNATILTDD---MVEPGMHINAVG  225 (346)
T ss_pred             cCCC-CCCceecHH---HcCCCcEEEecC
Confidence            9742 222456554   458999877765

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.19  E-value=0.0017  Score=64.06  Aligned_cols=96  Identities=15%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      -+++||||.|..|+.-++.++.-+.. +|.+|+|++... +.+.+.    +.+..  ...+..+.+++++++.||+|+.+
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~----~~~~~--~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAER----FSKEF--GVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHHhc--CCcEEEeCCHHHHHhcCCEEEEe
Confidence            46899999999999988877544554 799999998653 233222    22111  12233457899999999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|.   +.-+|..+.   +|||+.++-++.
T Consensus       190 T~s---~~P~~~~~~---l~pg~hV~aiGs  213 (301)
T PRK06407        190 TNS---DTPIFNRKY---LGDEYHVNLAGS  213 (301)
T ss_pred             cCC---CCcEecHHH---cCCCceEEecCC
Confidence            984   457776654   478877776654

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.19  E-value=0.00069  Score=55.98  Aligned_cols=89  Identities=24%  Similarity=0.233  Sum_probs=58.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      .++|+++.|||.|.+|..=++.| ...|++|.++++.. ...++               ...+.. ..+++-+..+|+|+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~---------------~i~~~~-~~~~~~l~~~~lV~   65 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG---------------LIQLIR-REFEEDLDGADLVF   65 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT---------------SCEEEE-SS-GGGCTTESEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh---------------HHHHHh-hhHHHHHhhheEEE
Confidence            58999999999999999999998 69999999999986 11111               011211 23445578899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .+++. ++    +++.....++.--+++|++-
T Consensus        66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   66 AATDD-PE----LNEAIYADARARGILVNVVD   92 (103)
T ss_dssp             E-SS--HH----HHHHHHHHHHHTTSEEEETT
T ss_pred             ecCCC-HH----HHHHHHHHHhhCCEEEEECC
Confidence            88874 22    44555566665667787653

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.18  E-value=0.0023  Score=61.93  Aligned_cols=112  Identities=22%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el-l~~aDiV  240 (398)
                      ...+++++|+|.|.+|+.++..+ ...|.+|.+++|+..+. +.+.+.+    ...+.     ....++++. +.++|+|
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~~-~~la~~~----~~~~~-----~~~~~~~~~~~~~~Div  182 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSKA-EELAERF----QRYGE-----IQAFSMDELPLHRVDLI  182 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHH----hhcCc-----eEEechhhhcccCccEE
Confidence            35678999999999999999998 46789999999886542 2222211    11110     011233333 3579999


Q ss_pred             EEccCCC--hhhhh-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          241 SLHPVLD--KTTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       241 ~l~~Plt--~~T~~-li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      +.++|..  ++... .+.   .+.++++.+++|+.-... ++ .|.+..++.
T Consensus       183 Inatp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~  229 (270)
T TIGR00507       183 INATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL  229 (270)
T ss_pred             EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence            9999974  11111 222   345678888888877654 33 455555543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.18  E-value=0.0033  Score=62.10  Aligned_cols=128  Identities=15%  Similarity=0.215  Sum_probs=73.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.||..+|..++ ..|. +|+.+|...........+.+......  ..........+.++ +++||+|+++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~--~~~~~i~~t~d~~~-~~~aDiVIita   77 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPVG--GFDTKVTGTNNYAD-TANSDIVVITA   77 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhcc--CCCcEEEecCCHHH-hCCCCEEEEcC
Confidence            57999999999999999874 4443 89999986543221211221111100  00111222356777 78999999998


Q ss_pred             CCChh---h--------hhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhcCCccEEE--ec
Q 015895          245 VLDKT---T--------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD  297 (398)
Q Consensus       245 Plt~~---T--------~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~a--L~~g~i~gAa--lD  297 (398)
                      +....   +        ..++-  .+.+....+++++|+++-.-=+-...+.+.  +...++.|.+  ||
T Consensus        78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            73211   1        12221  123444467889999877443334444444  4445666765  67

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.17  E-value=0.0021  Score=64.06  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=63.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..++++|||.|.+|+..+..++...+ -+|.+|+|+... .+.+.+.+    ...  ....+....++++++++||+|+.
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~----~~~--~g~~v~~~~d~~~al~~aDiVi~  203 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADL----RAE--LGIPVTVARDVHEAVAGADIIVT  203 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----hhc--cCceEEEeCCHHHHHccCCEEEE
Confidence            35789999999999998887643355 479999998764 23322221    111  01122334688999999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      ++|..   .-+|..+.   +++|+.+..+
T Consensus       204 aT~s~---~p~i~~~~---l~~g~~v~~v  226 (330)
T PRK08291        204 TTPSE---EPILKAEW---LHPGLHVTAM  226 (330)
T ss_pred             eeCCC---CcEecHHH---cCCCceEEee
Confidence            99853   45665543   5778766554

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.15  E-value=0.0033  Score=62.11  Aligned_cols=123  Identities=15%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCc-cccccCCHHHHhhcCCEEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISL  242 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~sl~ell~~aDiV~l  242 (398)
                      .++|+|||.|.||..+|.+| ...|.+|.++.+........    .+-.+.. .+.... ......+.+ ....+|+|++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vil   78 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAVRE----NGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLV   78 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHHHh----CCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEE
Confidence            36899999999999999998 57799999998865332211    0000000 010000 011112333 3578999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEe
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAal  296 (398)
                      +++.. ++...+ +..-..+++++.++...-| +-.++.|.+.+...++.++..
T Consensus        79 avK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~  129 (313)
T PRK06249         79 GLKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC  129 (313)
T ss_pred             EecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence            99853 444433 2334446778888887665 456777888887767666543

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.11  E-value=0.0022  Score=60.06  Aligned_cols=98  Identities=22%  Similarity=0.307  Sum_probs=63.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG-FKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|||||+|.||+.+.+.+..+ .+. .+.+||++.....+.         .+ .   .+.....+++|++++.|+|+=|
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~---------~~-~---~~~~~~s~ide~~~~~DlvVEa   67 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL---------EA-S---VGRRCVSDIDELIAEVDLVVEA   67 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH---------Hh-h---cCCCccccHHHHhhccceeeee
Confidence            4799999999999999987323 223 478999987654321         00 0   1111236799999999999877


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      ... +..+    .-....+|.|.=+|=+|-|.+.|+.-
T Consensus        68 AS~-~Av~----e~~~~~L~~g~d~iV~SVGALad~~l  100 (255)
T COG1712          68 ASP-EAVR----EYVPKILKAGIDVIVMSVGALADEGL  100 (255)
T ss_pred             CCH-HHHH----HHhHHHHhcCCCEEEEechhccChHH
Confidence            752 1222    22344566777777777888886543

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.10  E-value=0.0031  Score=62.85  Aligned_cols=95  Identities=19%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++++|||.|..+..-++.+..-|+. +|.+|+|++... +++.    .+++..+..  .+..+.+.+++++.||+|+.++
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a----~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~T  203 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFA----ARLRKRGGE--AVGAADSAEEAVEGADIVVTAT  203 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHH----HHHHhhcCc--cceeccCHHHHhhcCCEEEEec
Confidence            5799999999999999887656665 799999988653 2222    223322221  1234678999999999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |.++   -++..+.+   |+|+.+..++-
T Consensus       204 ~s~~---Pil~~~~l---~~G~hI~aiGa  226 (330)
T COG2423         204 PSTE---PVLKAEWL---KPGTHINAIGA  226 (330)
T ss_pred             CCCC---CeecHhhc---CCCcEEEecCC
Confidence            9654   66666554   59999998884

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.09  E-value=0.0046  Score=58.11  Aligned_cols=114  Identities=18%  Similarity=0.258  Sum_probs=67.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCCh---------hhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      .++.|+++.|.|||++|+.+|+.| ...|++|++ .|.+.         ....+. ....      .+..........+-
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~-~~~~------~~~~~~~~~~~~~~   90 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINY-AVAL------GGSARVKVQDYFPG   90 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHH-HHhh------CCccccCcccccCc
Confidence            468999999999999999999998 688886555 55543         022211 1100      01000000001111


Q ss_pred             HHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       231 ~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      ++++ ..||+++-|.+     .+.|+.+....++ -.+++-.+-+++-+  .-.+.|++..
T Consensus        91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~G  143 (217)
T cd05211          91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERG  143 (217)
T ss_pred             ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCC
Confidence            2332 48999998887     3477888888777 34666666766654  3345555544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.09  E-value=0.0031  Score=64.13  Aligned_cols=100  Identities=19%  Similarity=0.284  Sum_probs=68.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhcCCEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS  241 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sl~ell~~aDiV~  241 (398)
                      -+++||||.|..++.-++.++.-+.  -+|.+|+|++... +.+.+.    +.+... .. .+..+.+.+++++.||+|+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~----~~~~~~-~~~~v~~~~s~~eav~~ADIVv  228 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATW----VAETYP-QITNVEVVDSIEEVVRGSDIVT  228 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHH----HHHhcC-CCceEEEeCCHHHHHcCCCEEE
Confidence            3689999999999999988754453  4899999998643 222222    221100 01 1334578999999999999


Q ss_pred             EccCCCh---hhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Plt~---~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .+++.+.   .+.-+|..+   .+|+|+.++.++.
T Consensus       229 taT~s~~~~~s~~Pv~~~~---~lkpG~hv~~ig~  260 (379)
T PRK06199        229 YCNSGETGDPSTYPYVKRE---WVKPGAFLLMPAA  260 (379)
T ss_pred             EccCCCCCCCCcCcEecHH---HcCCCcEEecCCc
Confidence            9998543   344677655   4579998887665

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.08  E-value=0.0026  Score=59.15  Aligned_cols=95  Identities=15%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      -++.||++.|||.|.+|...++.| ...|++|++++|...+.+..+.+        .+  ...+....-.++.+..+|+|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~--~i~~~~~~~~~~~l~~adlV   74 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EG--KIRWKQKEFEPSDIVDAFLV   74 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CC--CEEEEecCCChhhcCCceEE
Confidence            479999999999999999999988 57899999999876554433211        11  11111111113446889999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +.++.. ++....|    ...++.+ .++|++
T Consensus        75 iaaT~d-~elN~~i----~~~a~~~-~lvn~~  100 (202)
T PRK06718         75 IAATND-PRVNEQV----KEDLPEN-ALFNVI  100 (202)
T ss_pred             EEcCCC-HHHHHHH----HHHHHhC-CcEEEC
Confidence            988875 3333333    2223334 466764

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.08  E-value=0.0023  Score=63.62  Aligned_cols=108  Identities=14%  Similarity=0.132  Sum_probs=67.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      .+|||||+|+||+.+++.+.+.-++++++ +|++.......            .   .+.....+.++++.+.|+|++|+
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~------------~---~~v~~~~d~~e~l~~iDVViIct   68 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT------------E---TPVYAVADDEKHLDDVDVLILCM   68 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh------------c---CCccccCCHHHhccCCCEEEEcC
Confidence            58999999999999999874334788775 68875332111            0   11222346777788999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCC--chhcHHH-HHHHHhc-CCccE
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRG--PVIDEVA-LVEHLKQ-NPMFR  293 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG--~~vde~a-L~~aL~~-g~i~g  293 (398)
                      |....     -......++.|.-+|+..--  .+-+..+ |-++.+. |+++-
T Consensus        69 Ps~th-----~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsv  116 (324)
T TIGR01921        69 GSATD-----IPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSV  116 (324)
T ss_pred             CCccC-----HHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            95332     13444556777777777432  1223333 5555553 55544

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.07  E-value=0.002  Score=54.67  Aligned_cols=94  Identities=18%  Similarity=0.317  Sum_probs=53.5

Q ss_pred             eEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       167 tvGIIG-lG~IG~~vA~~la~~fG~~V~~-~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      +|+||| .|.+|+.+.++|++...+++.. +.+..+.  ....   .+.   ...+........ .+.++ +.++|+|++
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~---~~~---~~~~~~~~~~~~-~~~~~-~~~~Dvvf~   72 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE---VFP---HPKGFEDLSVED-ADPEE-LSDVDVVFL   72 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH---TTG---GGTTTEEEBEEE-TSGHH-HTTESEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh---hcc---ccccccceeEee-cchhH-hhcCCEEEe
Confidence            699999 9999999999997666777554 4444311  1111   100   000111111212 23344 599999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|.. .+..+. ...   .++|..+|+.|.
T Consensus        73 a~~~~-~~~~~~-~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   73 ALPHG-ASKELA-PKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             -SCHH-HHHHHH-HHH---HHTTSEEEESSS
T ss_pred             cCchh-HHHHHH-HHH---hhCCcEEEeCCH
Confidence            99942 222222 222   578889999875

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.05  E-value=0.013  Score=57.76  Aligned_cols=147  Identities=21%  Similarity=0.233  Sum_probs=89.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH---HhhhhhhhhhcCCCCc--------cccccCCHHHH
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPV--------TWKRASSMDEV  233 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~sl~el  233 (398)
                      -+++||||.|.||+.+|..++ .-|.+|..+|++........   .+.+.. ....+....        ......++. .
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A-~~G~~V~l~D~~~~~~~~~~~~i~~~l~k-~~~~g~l~~~~~~~~l~~i~~~~~~~-~   79 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFA-LAGYDVVLKDISPEALERALAYIEKNLEK-LVEKGKLTEEEADAALARITPTTDLA-A   79 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHh-hcCCceEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCChhhHHHHHhhccccCchh-H
Confidence            478999999999999999975 35699999999954311110   111110 111111000        011122333 5


Q ss_pred             hhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCC
Q 015895          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (398)
Q Consensus       234 l~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~  313 (398)
                      ++.||+|+=++|-+-+.++-+-++.=..++++++|=.-.++  +.-.++.++++.- =...++=-|.+-     ++..+=
T Consensus        80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rp-er~iG~HFfNP~-----~~m~LV  151 (307)
T COG1250          80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALKRP-ERFIGLHFFNPV-----PLMPLV  151 (307)
T ss_pred             hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCc-hhEEEEeccCCC-----CcceeE
Confidence            78999999999988888877777777788999999544443  3346677777543 345666555432     233443


Q ss_pred             ceEEcCCCC
Q 015895          314 NAIVVPHIA  322 (398)
Q Consensus       314 nvilTPHia  322 (398)
                      -||-+.+++
T Consensus       152 EvI~g~~T~  160 (307)
T COG1250         152 EVIRGEKTS  160 (307)
T ss_pred             EEecCCCCC
Confidence            466666554

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.03  E-value=0.0046  Score=59.67  Aligned_cols=103  Identities=15%  Similarity=0.174  Sum_probs=63.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhc--CCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG--FKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el-l~~aDiV~  241 (398)
                      ++|||||+|.||+.+++.+..+  .+.++ .+|++.+.. .+.+.          +.    ...+.+++++ ..+.|+|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~----------~~----~~~~~~l~~ll~~~~DlVV   67 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALA----------GR----VALLDGLPGLLAWRPDLVV   67 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhh----------cc----CcccCCHHHHhhcCCCEEE
Confidence            5799999999999999987432  12544 446665422 22110          10    1234679996 58899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc---HHHHHHHHhc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ  288 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd---e~aL~~aL~~  288 (398)
                      =|..-  +   .+-+-.-..++.|.-++=.|-|.+-|   ++.|.++.+.
T Consensus        68 E~A~~--~---av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         68 EAAGQ--Q---AIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             ECCCH--H---HHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            87762  2   22222333455677777777788876   4445555554

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.03  E-value=0.0037  Score=64.34  Aligned_cols=96  Identities=16%  Similarity=0.265  Sum_probs=62.6

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.|+++.|||.|.||+.+|+.| ...|. ++++++|+... .+.+.+.+       +.  .......++.+.+.++|+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~-------~~--~~~~~~~~l~~~l~~aDiV  246 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAF-------RN--ASAHYLSELPQLIKKADII  246 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHh-------cC--CeEecHHHHHHHhccCCEE
Confidence            48899999999999999999998 57785 79999998653 23322222       10  0111224567788999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +.|++.   ...+|..+...  .+.-++||.|=
T Consensus       247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLav  274 (414)
T PRK13940        247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISI  274 (414)
T ss_pred             EECcCC---CCeeECHHHhC--CCCeEEEEeCC
Confidence            999974   23445544432  12235555543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.01  E-value=0.0068  Score=51.76  Aligned_cols=110  Identities=25%  Similarity=0.346  Sum_probs=60.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|+|+|+ |+||+.+++.+...-++++ .++|+..++...+   ..   ..-.+..+.+.....++++++..+|+|+-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~---g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DV---GELAGIGPLGVPVTDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BC---HHHCTSST-SSBEBS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hh---hhhhCcCCcccccchhHHHhcccCCEEEEc
Confidence            37999999 9999999999754478884 4567665221100   00   001122233444557899999999998755


Q ss_pred             cCCChh-hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          244 PVLDKT-TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       244 ~Plt~~-T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      .  +++ +...+ +..   ++.|.-+|-..+|---++.+.++.+.
T Consensus        75 T--~p~~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a  113 (124)
T PF01113_consen   75 T--NPDAVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELA  113 (124)
T ss_dssp             S---HHHHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred             C--ChHHhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence            5  233 22222 222   33477777777776444434444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.97  E-value=0.0039  Score=60.04  Aligned_cols=127  Identities=17%  Similarity=0.290  Sum_probs=74.3

Q ss_pred             EEEEec-ChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       168 vGIIGl-G~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      |+|||. |.+|..+|..++ ..|    -++..||...........+ ....... . .........++.+.+++||+|++
T Consensus         1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l~~~~~d-l~~~~~~-~-~~~~i~~~~d~~~~~~~aDiVv~   76 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKLKGVAMD-LQDAVEP-L-ADIKVSITDDPYEAFKDADVVII   76 (263)
T ss_pred             CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccchHHHHH-HHHhhhh-c-cCcEEEECCchHHHhCCCCEEEE
Confidence            589999 999999999874 445    6899999876432111111 1000011 1 11223334567888999999998


Q ss_pred             ccCC--Ch---------hhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEEE-eccCC
Q 015895          243 HPVL--DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRVG-LDVFE  300 (398)
Q Consensus       243 ~~Pl--t~---------~T~~li~--~~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gAa-lDV~~  300 (398)
                      +.-.  .+         ++..++.  .+.+.+..+.+++||.+  .++|.-+  +.+.  +...++.|.+ +|...
T Consensus        77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~r  150 (263)
T cd00650          77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPIR  150 (263)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHHH
Confidence            6521  11         1111221  12344456899999996  4444443  4444  4567788888 88643

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.97  E-value=0.0021  Score=65.75  Aligned_cols=99  Identities=21%  Similarity=0.245  Sum_probs=65.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .|+++++.|||.|.||.-+|+.| ...| .+|++.+|+..... .+.+.+       +   ..+....++.+.+..+|+|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA~-~La~~~-------~---~~~~~l~el~~~l~~~DvV  242 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERAE-ELAKKL-------G---AEAVALEELLEALAEADVV  242 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHHH-HHHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence            48999999999999999999998 5777 58899999886532 222211       2   1122345677789999999


Q ss_pred             EEccCCChhhhhhccHHHHhcC---CCCcEEEEcCCCc
Q 015895          241 SLHPVLDKTTYHLINKERLATM---KKEAILVNCSRGP  275 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~m---k~gailIN~aRG~  275 (398)
                      ++++.   ....+|..+.+...   +++-++||.+=..
T Consensus       243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence            99875   33445554444332   1114667765443

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.92  E-value=0.0047  Score=62.36  Aligned_cols=152  Identities=20%  Similarity=0.224  Sum_probs=92.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh------hhh--h---hhhhcCCCCccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT------AYG--Q---FLKANGEQPVTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~------~~~--~---~~~~~~~~~~~~~~~~sl~ell  234 (398)
                      .+|||||||-||-.+|-.++ ..|.+|++||....... ....      +..  .   .....|.    .....+.++ +
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd-~ln~G~~~i~e~~~~~~v~~~v~~g~----lraTtd~~~-l   82 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVD-KLNRGESYIEEPDLDEVVKEAVESGK----LRATTDPEE-L   82 (436)
T ss_pred             eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHH-HHhCCcceeecCcHHHHHHHHHhcCC----ceEecChhh-c
Confidence            68999999999999999874 77999999998875421 1100      000  0   0111111    111234444 4


Q ss_pred             hcCCEEEEccCCChhhh-------hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc-cEEEecc---CCC
Q 015895          235 READVISLHPVLDKTTY-------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM-FRVGLDV---FED  301 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~-------~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i-~gAalDV---~~~  301 (398)
                      +.||++++|+|. |-+.       -+.+  +..-..+|+|.++|==|+-.+--++.++..+-+..- ....-|.   |.+
T Consensus        83 ~~~dv~iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP  161 (436)
T COG0677          83 KECDVFIICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP  161 (436)
T ss_pred             ccCCEEEEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence            699999999884 4322       1222  234566899999999888777778887777665310 1122464   345


Q ss_pred             CCC-CCC---CCCCCCceEEcCCCCCCcHHHHH
Q 015895          302 EPY-MKP---GLSEMKNAIVVPHIASASKWTRE  330 (398)
Q Consensus       302 EP~-~~~---~L~~~~nvilTPHia~~T~ea~~  330 (398)
                      |-. |.+   .+...|+|     +||.|.+..+
T Consensus       162 ERv~PG~~~~el~~~~kV-----IgG~tp~~~e  189 (436)
T COG0677         162 ERVLPGNVLKELVNNPKV-----IGGVTPKCAE  189 (436)
T ss_pred             cccCCCchhhhhhcCCce-----eecCCHHHHH
Confidence            532 222   35566776     5777765543

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=96.83  E-value=0.0039  Score=62.33  Aligned_cols=93  Identities=16%  Similarity=0.109  Sum_probs=59.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.|+++.|||.|.||+.+|+.| ...|. +|++.+|+....  .+.+                 .....-+...++|+|
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~--~~~~-----------------~~~~~~~~~~~~DvV  230 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL--PYRT-----------------VVREELSFQDPYDVI  230 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc--chhh-----------------hhhhhhhcccCCCEE
Confidence            58999999999999999999998 67884 699999886320  0000                 000111445789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +.+..-|....-.+..+.+...++ -++||.|=..
T Consensus       231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR  264 (338)
T PRK00676        231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR  264 (338)
T ss_pred             EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence            987432333334455555554333 3777776544

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.74  E-value=0.0093  Score=61.77  Aligned_cols=120  Identities=11%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-c----------CChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D----------LYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      .++.|+||.|.|+|++|+.+|+.| ..+|++|++. |          ..... +..+.+.....+...... .+.. ..+
T Consensus       228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~~-L~~~k~~~~~~l~~~~~~-~~~~-~i~  303 (445)
T PRK09414        228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLEK-LKEIKEVRRGRISEYAEE-FGAE-YLE  303 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHH-HHHHHHhcCCchhhhhhh-cCCe-ecC
Confidence            479999999999999999999998 6899999988 5          22221 111111000001000000 0001 123


Q ss_pred             HHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       230 l~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk--~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      .++++ ..|||++-|..     .+.|+.+....++  +-.+++-.|-|.+ ..+ -.+.|.+..|
T Consensus       304 ~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI  361 (445)
T PRK09414        304 GGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGV  361 (445)
T ss_pred             CccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCc
Confidence            34444 37999997775     5667777666663  2346667777776 333 4456666554

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.73  E-value=0.0084  Score=49.98  Aligned_cols=107  Identities=24%  Similarity=0.323  Sum_probs=63.7

Q ss_pred             eEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~-fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      ++||||+|.+|+...+.+... -+.++. ++|+++... +.+.+.       .+     ...+.+++++++  +.|+|++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~-------~~-----~~~~~~~~~ll~~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEK-------YG-----IPVYTDLEELLADEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHH-------TT-----SEEESSHHHHHHHTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHH-------hc-----ccchhHHHHHHHhhcCCEEEE
Confidence            699999999999998776433 366764 788887542 222111       12     224578999998  7899999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEc-CCCchhcHHHHHHHHhcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~-aRG~~vde~aL~~aL~~g~  290 (398)
                      ++|....  .-+-...++.=+  .+++.- ---.+-+.++|.++.++.+
T Consensus        69 ~tp~~~h--~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~  113 (120)
T PF01408_consen   69 ATPPSSH--AEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG  113 (120)
T ss_dssp             ESSGGGH--HHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred             ecCCcch--HHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence            9995322  212222333212  344442 1124455566776666544

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.72  E-value=0.0063  Score=61.87  Aligned_cols=111  Identities=18%  Similarity=0.090  Sum_probs=69.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|.|||.|.||+.+|..|+ .-| .+|++-||+.....+- .+.....+   ....+.......+.+++++.|+|+.++
T Consensus         2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i-~~~~~~~v---~~~~vD~~d~~al~~li~~~d~VIn~~   76 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARI-AELIGGKV---EALQVDAADVDALVALIKDFDLVINAA   76 (389)
T ss_pred             CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHH-Hhhccccc---eeEEecccChHHHHHHHhcCCEEEEeC
Confidence            67999999999999999986 455 8999999997653221 11100000   011111122345789999999999999


Q ss_pred             CCChhhhhhccHHHH-hcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       245 Plt~~T~~li~~~~~-~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |..-   +   ...+ +.++.|.-.++++-....- -++-+..++
T Consensus        77 p~~~---~---~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~  114 (389)
T COG1748          77 PPFV---D---LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKK  114 (389)
T ss_pred             Cchh---h---HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHH
Confidence            9532   2   2333 5567888888887755432 334433333

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.68  E-value=0.008  Score=58.16  Aligned_cols=107  Identities=18%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|||||+|+||+.+++.+.+.-++++. ++++..... ...   .       .+   .+.....+++++-.+.|+|+.|
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~---~-------~~---~~~~~~~d~~~l~~~~DvVve~   68 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRR---A-------LG---EAVRVVSSVDALPQRPDLVVEC   68 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhh---h-------hc---cCCeeeCCHHHhccCCCEEEEC
Confidence            4799999999999999987432245543 334332211 111   0       00   0122346788875569999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde---~aL~~aL~~g~  290 (398)
                      .|.... .    +-....++.|.-++-.+-|.+.|.   +.|.++.+++.
T Consensus        69 t~~~~~-~----e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g  113 (265)
T PRK13303         69 AGHAAL-K----EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG  113 (265)
T ss_pred             CCHHHH-H----HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC
Confidence            984322 1    223333445555555555544443   44666665544

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.68  E-value=0.012  Score=56.53  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|+|+|+ |+||+.+++.+...-++++.+ +|+.......            .  ...+.....+++++++.+|+|+.+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~--~~~~i~~~~dl~~ll~~~DvVid~   67 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------Q--GALGVAITDDLEAVLADADVLIDF   67 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------c--CCCCccccCCHHHhccCCCEEEEC
Confidence            47999998 999999999874334687665 7766532110            0  111222346899999899999977


Q ss_pred             cC
Q 015895          244 PV  245 (398)
Q Consensus       244 ~P  245 (398)
                      +|
T Consensus        68 t~   69 (257)
T PRK00048         68 TT   69 (257)
T ss_pred             CC
Confidence            76

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.65  E-value=0.0079  Score=58.80  Aligned_cols=78  Identities=19%  Similarity=0.164  Sum_probs=52.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.++++.|||.|.+|++++..| ...|+ +|.++||+.... +.+.+.+    ..... ........++.+.++++|+|
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~l----~~~~~-~~~~~~~~~~~~~~~~aDiV  196 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADEL----NARFP-AARATAGSDLAAALAAADGL  196 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHH----HhhCC-CeEEEeccchHhhhCCCCEE
Confidence            46789999999999999999998 57887 799999987542 2222211    11000 01111123456677889999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      +.++|.
T Consensus       197 InaTp~  202 (284)
T PRK12549        197 VHATPT  202 (284)
T ss_pred             EECCcC
Confidence            999985

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.62  E-value=0.0072  Score=63.38  Aligned_cols=75  Identities=21%  Similarity=0.224  Sum_probs=51.3

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      +.++.+++++|+|.|.+|+++++.+ ...|++|.+++++.... +...+.+       +..   .....++.+ +..+|+
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~~---~~~~~~~~~-l~~~Di  393 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QGK---AFPLESLPE-LHRIDI  393 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------ccc---eechhHhcc-cCCCCE
Confidence            4568899999999999999999998 58899999999876432 2211111       100   001122222 468999


Q ss_pred             EEEccCCC
Q 015895          240 ISLHPVLD  247 (398)
Q Consensus       240 V~l~~Plt  247 (398)
                      |+.|+|..
T Consensus       394 VInatP~g  401 (477)
T PRK09310        394 IINCLPPS  401 (477)
T ss_pred             EEEcCCCC
Confidence            99999964

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.60  E-value=0.0092  Score=55.34  Aligned_cols=101  Identities=24%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Cccc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVTW  224 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~~  224 (398)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-+.  + +++           .+.....+.+.... ....
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~   95 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTA   95 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            4699999999999999999999984 6786 899999873110  0 000           00000111111100 0000


Q ss_pred             --ccc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          225 --KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       225 --~~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                        ...  .+++++++++|+|+.++. +.+++.++++......+
T Consensus        96 ~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i  137 (202)
T TIGR02356        96 LKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT  137 (202)
T ss_pred             ehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence              011  235677889999988875 46777777765555433

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.60  E-value=0.0062  Score=59.65  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCCh
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQ  199 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~  199 (398)
                      ++.||++.|+|.|.+|++++..| ...|++ |.+++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCc
Confidence            47889999999999999999987 578985 99999985

>PLN02477 glutamate dehydrogenase

Probab=96.58  E-value=0.059  Score=55.38  Aligned_cols=117  Identities=27%  Similarity=0.352  Sum_probs=71.9

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCC----------hhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (398)
                      |.+++|++|.|.|+|++|+.+|+.| ...|++|+ +.|.+          ... +.++.+..+ .+.  + .+ +.... 
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~-L~~~k~~~g-~l~--~-~~-~a~~i-  272 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPA-LRKHVAEGG-GLK--G-FP-GGDPI-  272 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHH-HHHHHHhcC-chh--c-cc-cceEe-
Confidence            3579999999999999999999998 68999999 44544          221 111111000 000  0 00 01111 


Q ss_pred             CHHHH-hhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          229 SMDEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       229 sl~el-l~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      +.+++ ...||+++-|.     ..+.|+++...+++ -.+++-.+-+.+ ..+ -.+.|++..|.
T Consensus       273 ~~~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~  329 (410)
T PLN02477        273 DPDDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV  329 (410)
T ss_pred             cCccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence            22333 35899988665     35678888888875 447777888887 333 34666666543

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.54  E-value=0.44  Score=47.78  Aligned_cols=107  Identities=12%  Similarity=0.151  Sum_probs=64.7

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+.|++|++||=+  ++..+.+..+ ..||++|.+..|..-.-.+...+......+..|   ..+....++++.+++||+
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv  228 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESG---ARITVTDDIDKAVKGVDF  228 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4889999999986  5788888876 589999999887531100111000000001112   123345789999999999


Q ss_pred             EEEcc----CCChh---hh------hhccHHHHhcC-CCCcEEEEcC
Q 015895          240 ISLHP----VLDKT---TY------HLINKERLATM-KKEAILVNCS  272 (398)
Q Consensus       240 V~l~~----Plt~~---T~------~li~~~~~~~m-k~gailIN~a  272 (398)
                      |..-.    ....+   .+      -.++++.++.+ |+++++.-|.
T Consensus       229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            97622    21011   11      12577788876 7888888773

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.52  E-value=0.011  Score=49.98  Aligned_cols=98  Identities=12%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             eEEEEe-cChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       167 tvGIIG-lG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++||+| .|.+|+.+++.+...-+.++.+. ++..+. .+.....+ ...   ...........+++  ..++|+|++|+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~-~~~~~~~~-~~~---~~~~~~~~~~~~~~--~~~~DvV~~~~   73 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSA-GKRVSEAG-PHL---KGEVVLELEPEDFE--ELAVDIVFLAL   73 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhc-CcCHHHHC-ccc---ccccccccccCChh--hcCCCEEEEcC
Confidence            589999 59999999998743236676665 433211 01100000 000   00000000112222  25899999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |.. .+...+. .....+++|.++|+++.
T Consensus        74 ~~~-~~~~~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       74 PHG-VSKEIAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             CcH-HHHHHHH-HHHhhhcCCCEEEECCc
Confidence            964 3333332 23456799999999974

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.51  E-value=0.013  Score=48.53  Aligned_cols=84  Identities=17%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhcc
Q 015895          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (398)
Q Consensus       176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~  255 (398)
                      -+..+++.| +..|++|.+|||..........          +. ..++....++++.++.+|.|+++++- ++-+.+--
T Consensus        18 p~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~   84 (106)
T PF03720_consen   18 PALELIEEL-KERGAEVSVYDPYVDEEEIKEL----------GK-LEGVEVCDDLEEALKGADAVVLATDH-DEFRELDW   84 (106)
T ss_dssp             HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH----------CH-HHCEEEESSHHHHHTTESEEEESS---GGGGCCGH
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccChHHHHhh----------CC-ccceEEecCHHHHhcCCCEEEEEecC-HHHhccCH
Confidence            466788988 7899999999999876432210          00 01133346899999999999999985 34333323


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 015895          256 KERLATMKKEAILVNCS  272 (398)
Q Consensus       256 ~~~~~~mk~gailIN~a  272 (398)
                      ++....|+++.++|++-
T Consensus        85 ~~~~~~~~~~~~iiD~~  101 (106)
T PF03720_consen   85 EEIAKLMRKPPVIIDGR  101 (106)
T ss_dssp             HHHHHHSCSSEEEEESS
T ss_pred             HHHHHhcCCCCEEEECc
Confidence            45567788999999973

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.50  E-value=0.014  Score=55.92  Aligned_cols=123  Identities=19%  Similarity=0.235  Sum_probs=71.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE--------cCChhh--HHHHHHhhhhhhhhhcCC-CCccccccCCH
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGE-QPVTWKRASSM  230 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~sl  230 (398)
                      +++|+++.|=|+|++|+.+|+.| ...|++|++.        ||..-+  .+..+.+..+..+..... .+.+... .+-
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~-~~~  106 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEY-IPN  106 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEE-ECH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeE-ecc
Confidence            69999999999999999999998 6889998876        654322  222211221110110000 0000111 122


Q ss_pred             H-HHh-hcCCEEEEccCCChhhhhhccHHHHh-cCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          231 D-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       231 ~-ell-~~aDiV~l~~Plt~~T~~li~~~~~~-~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      + +++ ..||+++-|.-     .+.|+.+... .++.++.+|--+--..+..++.. .|++..|.
T Consensus       107 ~~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  107 DDEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL  165 (244)
T ss_dssp             HCHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred             ccccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence            2 555 68999998842     5668888887 77766666555444444455554 77766553

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.50  E-value=0.034  Score=55.17  Aligned_cols=109  Identities=12%  Similarity=0.001  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhh------HHH---HHHhhhhhhhhhcCCCC--------ccccccC--CHHHHhhc
Q 015895          176 IGSAYARMMVEGFKMNLIYYDLYQAT------RLE---KFVTAYGQFLKANGEQP--------VTWKRAS--SMDEVLRE  236 (398)
Q Consensus       176 IG~~vA~~la~~fG~~V~~~d~~~~~------~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~--sl~ell~~  236 (398)
                      ||..+|..++ ..|++|+.||+++..      .++   ......-......+...        .......  ++.+.+++
T Consensus         1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~   79 (314)
T PRK08269          1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD   79 (314)
T ss_pred             CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence            6899999875 679999999998832      011   11110000111111110        0111112  25688899


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      ||+|+-++|-+.+.+.-+-++..+.++++++|...+.  .+....|.+.++
T Consensus        80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS--~~~~~~la~~~~  128 (314)
T PRK08269         80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTS--TFLVTDLQRHVA  128 (314)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccc--cCCHHHHHhhcC
Confidence            9999999999999998888888889999999954444  455677777775

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.49  E-value=0.012  Score=56.49  Aligned_cols=121  Identities=14%  Similarity=0.116  Sum_probs=70.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-c-------CChh--hHHHHHH---hhhhhhhhhcC-CCCccccc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D-------LYQA--TRLEKFV---TAYGQFLKANG-EQPVTWKR  226 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d-------~~~~--~~~~~~~---~~~~~~~~~~~-~~~~~~~~  226 (398)
                      .++.|+|+.|-|||++|+.+|+.| ..+|++|++. |       +.--  +.+..+.   +...+.+.... ..+ +...
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~-~a~~  111 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYG-TAKY  111 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCC-CCEE
Confidence            579999999999999999999998 6899999943 3       2210  1111100   00000000000 000 0111


Q ss_pred             cCCHHHH-hhcCCEEEEccCCChhhhhhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          227 ASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       227 ~~sl~el-l~~aDiV~l~~Plt~~T~~li~~~~~~~mk--~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                       .+.+++ -..|||++-|.     +.+.|+.+...+++  +-.+++-.+-|++-.  +-.+.|.+..+
T Consensus       112 -~~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI  171 (254)
T cd05313         112 -FEGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGV  171 (254)
T ss_pred             -eCCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCc
Confidence             123333 35799998764     57889999888884  344666777777644  34466666554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.47  E-value=0.031  Score=54.95  Aligned_cols=128  Identities=13%  Similarity=0.275  Sum_probs=66.6

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|..+|..++. +++ +|+.+|+..........+.... ....+ .........+.+ .+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~-~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEA-APVEG-FDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhh-hhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence            589999999999999998752 234 9999999664321111111110 00011 111122224564 479999999885


Q ss_pred             --CCChh---------hhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhcCCccEEE--ec
Q 015895          245 --VLDKT---------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD  297 (398)
Q Consensus       245 --Plt~~---------T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~a--L~~g~i~gAa--lD  297 (398)
                        |..+.         +..++.  .+.+....+.+++|+.+-..=+-...+.+.  +...++.|.+  ||
T Consensus        79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~ld  148 (307)
T PRK06223         79 GVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLD  148 (307)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcH
Confidence              32221         112221  112333346678888754333333333332  2224666654  55

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.46  E-value=0.046  Score=48.76  Aligned_cols=105  Identities=17%  Similarity=0.231  Sum_probs=66.4

Q ss_pred             CCCeEEEEe--cChhHHHHHHHHHhcCCcEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIG--lG~IG~~vA~~la~~fG~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .|++|++||  -+++..+++..+ ..||+++.+..|..-  +......+.........+   ..+....+++|.++++|+
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv   76 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV   76 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred             CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence            488999999  389999999987 689999999988762  111111111001111112   112234789999999999


Q ss_pred             EEEccCC----Chhh-------hhhccHHHHhcCCCCcEEEEcC
Q 015895          240 ISLHPVL----DKTT-------YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       240 V~l~~Pl----t~~T-------~~li~~~~~~~mk~gailIN~a  272 (398)
                      |..-.-.    .+..       .-.++++.++.+|++++|.-|.
T Consensus        77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            9654433    1110       1246888999999999998884

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.43  E-value=0.014  Score=52.15  Aligned_cols=43  Identities=16%  Similarity=0.091  Sum_probs=36.9

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~  202 (398)
                      ...+|.|++|.|||.|.+|...++.| ...|++|.+++|...++
T Consensus         7 ~~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~~   49 (157)
T PRK06719          7 LMFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICKE   49 (157)
T ss_pred             eEEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCHH
Confidence            34589999999999999999999998 58999999998765543

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.42  E-value=0.022  Score=56.49  Aligned_cols=102  Identities=19%  Similarity=0.273  Sum_probs=58.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+++|+|||.|.+|+.+|-.+ ...|.  ++..||.........-.+.     .+...  ..... ...+. +.+++||+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~Dl-----~~~~~~~~~~~i-~~~~~-~~~~~adi   76 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMDL-----SHAVPFTSPTKI-YAGDY-SDCKDADL   76 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHHH-----HhhccccCCeEE-EeCCH-HHhCCCCE
Confidence            467999999999999999987 45565  8999998654321111111     11100  01111 12344 44799999


Q ss_pred             EEEccCC--Ch-hhh-hhc--c----H---HHHhcCCCCcEEEEcCC
Q 015895          240 ISLHPVL--DK-TTY-HLI--N----K---ERLATMKKEAILVNCSR  273 (398)
Q Consensus       240 V~l~~Pl--t~-~T~-~li--~----~---~~~~~mk~gailIN~aR  273 (398)
                      |++..-.  .+ +++ .++  |    +   +.+..-.+.+++|+++-
T Consensus        77 vIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         77 VVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             EEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            9886532  22 222 222  1    1   22333446889999873

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.41  E-value=0.027  Score=56.10  Aligned_cols=129  Identities=16%  Similarity=0.213  Sum_probs=70.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      +..++|+|||.|.||..+|..++ ..| .+|+.+|..+........+.... ....+ .........+.+ .++.||+|+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~~~~-~~~~I~~~~d~~-~l~~aDiVI   79 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NVIAG-SNSKVIGTNNYE-DIAGSDVVI   79 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hhccC-CCeEEEECCCHH-HhCCCCEEE
Confidence            45579999999999999998864 445 48999998876422111221111 01011 111222224664 569999999


Q ss_pred             EccCC--Ch--------------hhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh--cCCccEEE
Q 015895          242 LHPVL--DK--------------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG  295 (398)
Q Consensus       242 l~~Pl--t~--------------~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~--~g~i~gAa  295 (398)
                      ++.-.  .+              ++..++.  .+.+....|.+++|+.+-..=+-...+.+.-.  ..++.|.+
T Consensus        80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            87622  11              1122221  12334445677999998533233333443332  23566655

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.40  E-value=0.0045  Score=62.00  Aligned_cols=68  Identities=19%  Similarity=0.335  Sum_probs=47.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ++||||||-|-.|+.++.. ++.+|.+|++.||.+..-..+..+        .- ....+.....+.+++++||+|+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va~--------~~-i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVAD--------RV-IVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhccc--------ce-eecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999998 489999999999987542222100        00 00001112257899999999964

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.37  E-value=0.0066  Score=57.32  Aligned_cols=77  Identities=19%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el-l~~aDiV~l~~  244 (398)
                      |++.|+|+|++|+.+|+.| ...|++|+..|.......+...+.+....    ....+ ....-|+++ +.++|+++.++
T Consensus         1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~----v~gd~-t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHV----VIGDA-TDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEE----EEecC-CCHHHHHhcCCCcCCEEEEee
Confidence            5799999999999999998 69999999999988654331111110000    00000 011235565 78899999999


Q ss_pred             CCCh
Q 015895          245 VLDK  248 (398)
Q Consensus       245 Plt~  248 (398)
                      ..+.
T Consensus        75 ~~d~   78 (225)
T COG0569          75 GNDE   78 (225)
T ss_pred             CCCH
Confidence            8543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.36  E-value=0.096  Score=53.18  Aligned_cols=154  Identities=16%  Similarity=0.194  Sum_probs=93.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh----hh----hhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT----AY----GQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      |+|.|+|.|-+|-..+-.+ ..+|++|+.+|....+. +....    .|    ...+++..... +...-.+.++.++.+
T Consensus         1 MkI~viGtGYVGLv~g~~l-A~~GHeVv~vDid~~KV-~~ln~g~~PI~EpgLe~ll~~~~~~g-Rl~fTtd~~~a~~~a   77 (414)
T COG1004           1 MKITVIGTGYVGLVTGACL-AELGHEVVCVDIDESKV-ELLNKGISPIYEPGLEELLKENLASG-RLRFTTDYEEAVKDA   77 (414)
T ss_pred             CceEEECCchHHHHHHHHH-HHcCCeEEEEeCCHHHH-HHHhCCCCCCcCccHHHHHHhccccC-cEEEEcCHHHHHhcC
Confidence            5799999999999999998 48999999999887642 11111    11    11122111110 122235788889999


Q ss_pred             CEEEEccCCChhhhhhcc--------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEecc-CCCCCCCC-C
Q 015895          238 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV-FEDEPYMK-P  307 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~--------~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV-~~~EP~~~-~  307 (398)
                      |++++++|....-.+-+|        ++..+.++..+++|+=|+-.+--.+.+.+-+.+..-.. -.+| +.+|=+.. +
T Consensus        78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~  156 (414)
T COG1004          78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGS  156 (414)
T ss_pred             CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcc
Confidence            999999996554333332        34556677779999999977766666666555443222 3333 44554422 1


Q ss_pred             ---CCCCCCceEEcCCCCCCcHH
Q 015895          308 ---GLSEMKNAIVVPHIASASKW  327 (398)
Q Consensus       308 ---~L~~~~nvilTPHia~~T~e  327 (398)
                         ..+.-+++++    |..+..
T Consensus       157 Av~D~~~PdRIVi----G~~~~~  175 (414)
T COG1004         157 AVYDFLYPDRIVI----GVRSER  175 (414)
T ss_pred             hhhhccCCCeEEE----ccCChh
Confidence               2333356654    555544

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.36  E-value=0.011  Score=58.17  Aligned_cols=38  Identities=18%  Similarity=0.397  Sum_probs=33.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~  202 (398)
                      .|+.+||+|+|-+|.--.+. |++|||+|++.|+..+++
T Consensus       181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kk  218 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKK  218 (360)
T ss_pred             CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhH
Confidence            89999999999999877776 699999999999986443

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.30  E-value=0.013  Score=54.86  Aligned_cols=96  Identities=19%  Similarity=0.298  Sum_probs=68.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhcCCE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sl~ell~~aDi  239 (398)
                      .++.||+|.|||-|.+|..=|+.+ ...|++|+++.+...+++..+.+.        +.  ..+. ...+.+++ ..+++
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~--------~~--i~~~~~~~~~~~~-~~~~l   75 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE--------GK--IKWIEREFDAEDL-DDAFL   75 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh--------cC--cchhhcccChhhh-cCceE
Confidence            579999999999999999999998 589999999999885555443321        11  1111 11234444 45999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+.+++..+     +|+..+..+++-.+++|+.-
T Consensus        76 viaAt~d~~-----ln~~i~~~a~~~~i~vNv~D  104 (210)
T COG1648          76 VIAATDDEE-----LNERIAKAARERRILVNVVD  104 (210)
T ss_pred             EEEeCCCHH-----HHHHHHHHHHHhCCceeccC
Confidence            999997432     56777777888778888743

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.23  E-value=0.047  Score=54.17  Aligned_cols=121  Identities=17%  Similarity=0.233  Sum_probs=68.7

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCC-ccccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQP-VTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~sl~ell~~aDiV~l  242 (398)
                      .+|+|||.|.||..+|-.++ ++..-++..||...........+.     .+.. ... .......+.++ +++||+|++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl-----~~~~~~~~~~~v~~~~dy~~-~~~adivvi   77 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDL-----QHGSAFLKNPKIEADKDYSV-TANSKVVIV   77 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHH-----HHhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence            48999999999999998764 244558999998764322211111     1111 000 11222245665 799999998


Q ss_pred             ccCC--Ch-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEE
Q 015895          243 HPVL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV  294 (398)
Q Consensus       243 ~~Pl--t~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gA  294 (398)
                      +.-.  .+ +|| .++  |       .+.+....+.+++|+++-  ++|.-+  +.+.  +...++.|.
T Consensus        78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN--P~d~~t~~~~k~sg~p~~~viG~  144 (312)
T cd05293          78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN--PVDIMTYVAWKLSGLPKHRVIGS  144 (312)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC--hHHHHHHHHHHHhCCCHHHEEec
Confidence            6432  22 344 222  1       123444578899999983  444433  3333  444566665

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.22  E-value=0.97  Score=44.68  Aligned_cols=105  Identities=20%  Similarity=0.221  Sum_probs=62.7

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      +.|.+|+++|= +++-++.+..+ ..||++|.+..|..-...+...+.........|   ..+....++++.+++||+|.
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy  221 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY  221 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence            88999999997 78888888876 689999999887532111111110000001111   12334468999999999997


Q ss_pred             Ecc--CCCh-----h-----hhhhccHHHHhcCCCCcEEEEc
Q 015895          242 LHP--VLDK-----T-----TYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       242 l~~--Plt~-----~-----T~~li~~~~~~~mk~gailIN~  271 (398)
                      .-.  ....     +     ..-.++++.++.+|+++++.-|
T Consensus       222 ~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp  263 (304)
T TIGR00658       222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC  263 (304)
T ss_pred             EcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence            632  1100     0     0113566777777777766655

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.21  E-value=0.018  Score=57.78  Aligned_cols=98  Identities=20%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh-------------HH---HHHHhhhhhhhhhcCCC-Cc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-------------RL---EKFVTAYGQFLKANGEQ-PV  222 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~-------------~~---~~~~~~~~~~~~~~~~~-~~  222 (398)
                      ..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|+..-+             ..   ....+.....+++.... ..
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i   98 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI   98 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence            4699999999999999999999985 6786 78888886410             00   00000000111111100 00


Q ss_pred             -ccc---ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHh
Q 015895          223 -TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (398)
Q Consensus       223 -~~~---~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~  260 (398)
                       ...   ...+++++++++|+|+.++ .+.+++-++++-...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~  139 (338)
T PRK12475         99 VPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK  139 (338)
T ss_pred             EEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence             000   0124678889999999888 467788888765444

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.034  Score=57.89  Aligned_cols=118  Identities=19%  Similarity=0.184  Sum_probs=69.6

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      -+.+++|+|+|+|..|+++|+.| +..|++|.++|...........+    .++..+   ..+.......+.+.++|+|+
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~~~~~~~~~~~~dlVV   82 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSN----ELKELG---VKLVLGENYLDKLDGFDVIF   82 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHH----HHHhCC---CEEEeCCCChHHhccCCEEE
Confidence            36788999999999999999998 79999999999865322110000    011222   11111122234457899998


Q ss_pred             EccCCChhhhhh-----------ccH-HHH-hcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          242 LHPVLDKTTYHL-----------INK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       242 l~~Plt~~T~~l-----------i~~-~~~-~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      .. |.-+.+...           +++ +.+ ...+...+-|--+.|..--..-|...|+.
T Consensus        83 ~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~  141 (458)
T PRK01710         83 KT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE  141 (458)
T ss_pred             EC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            77 332222221           221 122 22333456666677887766667777764

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.19  E-value=0.026  Score=56.42  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|++|+|+|+|-.|....+. |+++|++|+++|++..+
T Consensus       166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K  202 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEK  202 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHH
Confidence            48899999999999988887 48999999999998865

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.19  E-value=0.02  Score=65.05  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=47.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-------------EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      +.|+|+|||.|.||+..|+.|++.-+.+             |.+.|++.... +...+.+      .+...... .+.+.
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~l-Dv~D~  639 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQL-DVSDS  639 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEe-ecCCH
Confidence            4679999999999999999986443444             88899987542 2211111      01100111 12344


Q ss_pred             HH---HhhcCCEEEEccCC
Q 015895          231 DE---VLREADVISLHPVL  246 (398)
Q Consensus       231 ~e---ll~~aDiV~l~~Pl  246 (398)
                      ++   +++++|+|++++|.
T Consensus       640 e~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        640 ESLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHHHHhhcCCCEEEECCCc
Confidence            44   44689999999995

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.15  E-value=0.012  Score=55.31  Aligned_cols=156  Identities=19%  Similarity=0.251  Sum_probs=90.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcC--CCCcc-----------cc
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANG--EQPVT-----------WK  225 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~--~~~~~-----------~~  225 (398)
                      ...-+.|+|||.|.||+.+|+.. ..-|.+|+.+|.+.....+. .+....++.   +..  ..+..           ..
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A-~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~   85 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRA-TKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK   85 (298)
T ss_pred             cccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHH-HHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence            34456899999999999999985 58899999999987642211 111111111   111  11110           11


Q ss_pred             ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC
Q 015895          226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (398)
Q Consensus       226 ~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~  304 (398)
                      ...++.++++.+|+|+=++--+-+.+.-|-++.=..+|+.+++. |+|.   +...++..++++. -..++|--|.+-| 
T Consensus        86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvP-  160 (298)
T KOG2304|consen   86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVP-  160 (298)
T ss_pred             HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCch-
Confidence            23456667777887765544333333223344444578888775 4444   3456677777754 4668888887654 


Q ss_pred             CCCCCCCCCceEEcCCCCCCcHHH
Q 015895          305 MKPGLSEMKNAIVVPHIASASKWT  328 (398)
Q Consensus       305 ~~~~L~~~~nvilTPHia~~T~ea  328 (398)
                          ...+-.||=|+..+-.|..+
T Consensus       161 ----vMKLvEVir~~~TS~eTf~~  180 (298)
T KOG2304|consen  161 ----VMKLVEVIRTDDTSDETFNA  180 (298)
T ss_pred             ----hHHHhhhhcCCCCCHHHHHH
Confidence                33444467777665444433

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.14  E-value=0.034  Score=55.81  Aligned_cols=80  Identities=19%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhh----hhhcC--CCCccccccCCHHHHhhcCC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQF----LKANG--EQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+|||+|+|+||+.+++.++..-++++.+. |+.+ ...+.....++-.    .....  ....+.....++++++..+|
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~-~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD   80 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP-DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD   80 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh-HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence            379999999999999998743447887665 4332 2111111100000    00000  00011222346788888999


Q ss_pred             EEEEccCC
Q 015895          239 VISLHPVL  246 (398)
Q Consensus       239 iV~l~~Pl  246 (398)
                      +|+.|.|.
T Consensus        81 VVIdaT~~   88 (341)
T PRK04207         81 IVVDATPG   88 (341)
T ss_pred             EEEECCCc
Confidence            99999985

>PRK11579 putative oxidoreductase; Provisional

Probab=96.12  E-value=0.053  Score=54.18  Aligned_cols=67  Identities=18%  Similarity=0.137  Sum_probs=44.2

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~  241 (398)
                      .++||||+|.||+. .+..+.+.-++++. ++|++.....+.           .+    +...+.+++++++  +.|+|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~-----------~~----~~~~~~~~~ell~~~~vD~V~   69 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKAD-----------WP----TVTVVSEPQHLFNDPNIDLIV   69 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhh-----------CC----CCceeCCHHHHhcCCCCCEEE
Confidence            47999999999985 56655333467776 578765432111           01    1123468999996  579999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      +++|..
T Consensus        70 I~tp~~   75 (346)
T PRK11579         70 IPTPND   75 (346)
T ss_pred             EcCCcH
Confidence            999953

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.09  E-value=0.023  Score=58.65  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             CeEEEEecChhHHHHHH--HHH---hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIGAGRIGSAYAR--MMV---EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~--~la---~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+|+|||.|.+|...+-  -++   ...|.+|..||+.+.... .........+...+ .........++.+.++.||+|
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~-~~~~~~~~~~~~~~-~~~~I~~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLE-TVEILAKKIVEELG-APLKIEATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHH-HHHHHHHHHHHhcC-CCeEEEEeCCHHHHhcCCCEE
Confidence            36999999999998554  121   123579999999875421 11110000111111 122233346788999999999


Q ss_pred             EEccC
Q 015895          241 SLHPV  245 (398)
Q Consensus       241 ~l~~P  245 (398)
                      +.++|
T Consensus        79 i~ai~   83 (423)
T cd05297          79 INTIQ   83 (423)
T ss_pred             EEeeE
Confidence            99998

linked to 3D####ucture

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.08  E-value=0.04  Score=53.36  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=59.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|+|+| +|+||+.+++.+...-++++.+ +|+..+....+...      ...+..+.++....+++++...+|+|+.+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~------~~~~~~~~gv~~~~d~~~l~~~~DvVIdf   75 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG------ELAGIGKVGVPVTDDLEAVETDPDVLIDF   75 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH------HhcCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence            3799999 6999999999875446787655 67432211000000      00111111233346788886679999998


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQ  288 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v-de~aL~~aL~~  288 (398)
                      .|- +...    +-....++.|.-+|-...|--. +.+.|.++.+.
T Consensus        76 T~p-~~~~----~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~  116 (266)
T TIGR00036        76 TTP-EGVL----NHLKFALEHGVRLVVGTTGFSEEDKQELADLAEK  116 (266)
T ss_pred             CCh-HHHH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhc
Confidence            863 2222    2233334455445544445322 22335555554

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.07  E-value=0.069  Score=52.65  Aligned_cols=109  Identities=20%  Similarity=0.301  Sum_probs=62.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||.|.+|+.+|..| ...|  .++..+|+........ ...+.......+ ..... ...+.+ .++.||+|+++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l-~~~g~~~ei~l~D~~~~~~~~~-a~dL~~~~~~~~-~~~~i-~~~~~~-~l~~aDIVIit   75 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSL-VNQGIADELVLIDINEEKAEGE-ALDLEDALAFLP-SPVKI-KAGDYS-DCKDADIVVIT   75 (306)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCcchhhHh-HhhHHHHhhccC-CCeEE-EcCCHH-HhCCCCEEEEc
Confidence            4799999999999999987 4566  5899999976542111 111100000001 00011 123444 47899999998


Q ss_pred             cCCCh---hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          244 PVLDK---TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       244 ~Plt~---~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      .....   ++| .++  |       .+.+....+.+++|+++  .++|.-+
T Consensus        76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~~  124 (306)
T cd05291          76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVIT  124 (306)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHHH
Confidence            76521   122 222  1       12345557788999987  4555444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.06  E-value=0.079  Score=54.73  Aligned_cols=119  Identities=22%  Similarity=0.271  Sum_probs=71.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++.+|++.|+|.|.+|.++|+.| ...|++|.++|+..........+.    +...+.   ........++....+|+|+
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~~---~~~~~~~~~~~~~~~d~vv   73 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELGI---ELVLGEYPEEFLEGVDLVV   73 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcCC---EEEeCCcchhHhhcCCEEE
Confidence            46899999999999999999998 589999999999753322221111    111121   1212223346677899998


Q ss_pred             EccCCChhhhhhc----------c-HHH-HhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          242 LHPVLDKTTYHLI----------N-KER-LATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       242 l~~Plt~~T~~li----------~-~~~-~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      .+.-..+...-+.          . .+. ....+...+-|--+.|..--..-|...|+.
T Consensus        74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            8754433322111          1 111 222233345555577887777767777764

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.05  E-value=0.015  Score=55.91  Aligned_cols=107  Identities=21%  Similarity=0.196  Sum_probs=65.6

Q ss_pred             cccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .|.+|+..|++|+|+ |.||..+||.| .+.+.+....-|.....-++..+.    +.    .+.+.....|++..+.+.
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~l-a~~~~~~~ll~r~aea~~rq~l~~----l~----e~~~~~~i~s~d~~~~~e  231 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWL-APKVGVKELLLRDAEARNRQRLTL----LQ----EELGRGKIMSLDYALPQE  231 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHh-ccccCEEEEecccHHhhhhhhhhh----cc----cccCCCeeeecccccccc
Confidence            568999999999998 99999999998 466665544443332211111100    11    112222345666666666


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde  279 (398)
                      |+++-....  .+-..|+.+   ++|||++++|-++..=+|+
T Consensus       232 ~i~v~vAs~--~~g~~I~pq---~lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         232 DILVWVASM--PKGVEIFPQ---HLKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             ceEEEEeec--CCCceechh---hccCCeEEEcCCcCccccc
Confidence            766533321  234556664   4689999999998765544

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.04  E-value=0.034  Score=57.62  Aligned_cols=120  Identities=12%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh----------hhHHHHHHhhh----hhhhhhcCCCCcccc
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAY----GQFLKANGEQPVTWK  225 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~  225 (398)
                      |.+|.|+||.|.|+|++|+..|+.| ..+|++|++...+.          ...+. +...+    ...+.... ...+..
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~~~~v~~~~-~~~ga~  299 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLYRGRIREYA-EKYGCK  299 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhcCCchhhhH-hhcCCE
Confidence            4579999999999999999999998 68999999843311          01111 00000    00010000 000111


Q ss_pred             ccCCHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCC-Cc-EEEEcCCCchhcHHHHHHHHhcC
Q 015895          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       226 ~~~sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~-ga-ilIN~aRG~~vde~aL~~aL~~g  289 (398)
                       ..+.++++ ..|||++-|.     +.+.|+++...+++. |. +++-.|-| ++..++...-.+.|
T Consensus       300 -~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg  359 (444)
T PRK14031        300 -YVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK  359 (444)
T ss_pred             -EcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence             11334442 5699988554     478899888888865 45 44555555 66666554444433

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.03  E-value=0.014  Score=54.11  Aligned_cols=61  Identities=18%  Similarity=0.304  Sum_probs=45.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++++|||- |.||+.+++.+ +..|+.|.                                        +++||+|++|+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilav   39 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSV   39 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeC
Confidence            47999999 99999999998 78888763                                        25799999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      |- ..+..++.     .+.  .+++|++.-+
T Consensus        40 Pv-~~~~~~i~-----~~~--~~v~Dv~SvK   62 (197)
T PRK06444         40 PI-DAALNYIE-----SYD--NNFVEISSVK   62 (197)
T ss_pred             CH-HHHHHHHH-----HhC--CeEEeccccC
Confidence            95 34444443     222  3788998744

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.02  E-value=0.052  Score=44.96  Aligned_cols=90  Identities=20%  Similarity=0.280  Sum_probs=54.9

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhcCCEEEEc
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH  243 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el----l~~aDiV~l~  243 (398)
                      +-|+|+|.+|+.+++.| +..+.+|++.|..+.....         ++..+ .........+.+.+    ++++|.|+++
T Consensus         1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~~---------~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVEE---------LREEG-VEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHHH---------HHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHHH---------HHhcc-cccccccchhhhHHhhcCccccCEEEEc
Confidence            56999999999999998 5666799999998765221         11222 11111122233322    6889999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                      .+..  ...+.-...++.+.+...+|-
T Consensus        70 ~~~d--~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   70 TDDD--EENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             SSSH--HHHHHHHHHHHHHTTTSEEEE
T ss_pred             cCCH--HHHHHHHHHHHHHCCCCeEEE
Confidence            9854  333333455566556555554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.01  E-value=0.016  Score=50.65  Aligned_cols=110  Identities=20%  Similarity=0.354  Sum_probs=62.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||. |++|+.+|-.|.. +++-++..+|...........+.... ...   ............+.+++||+|++.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~-~~~---~~~~~~i~~~~~~~~~~aDivvit   76 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHA-SAP---LPSPVRITSGDYEALKDADIVVIT   76 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHH-HHG---STEEEEEEESSGGGGTTESEEEET
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhh-hhh---cccccccccccccccccccEEEEe
Confidence            47999999 9999999987643 66679999999865322111111100 000   001111122455668999999998


Q ss_pred             c--CCCh-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          244 P--VLDK-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       244 ~--Plt~-~T~-~li--~~-------~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      .  |..+ +++ .++  |.       +.+....+.++++.++-  ++|.-+
T Consensus        77 ag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN--Pvd~~t  125 (141)
T PF00056_consen   77 AGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN--PVDVMT  125 (141)
T ss_dssp             TSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS--SHHHHH
T ss_pred             ccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC--cHHHHH
Confidence            7  3332 222 222  11       23344457788888854  466433

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.00  E-value=0.04  Score=52.80  Aligned_cols=87  Identities=15%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      .++-|+|-|.+++.+|+.+ +.+|++|.++|+++....+                           ..+..++.+....|
T Consensus       101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~~~---------------------------~~~~~~~~~~~~~~  152 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEFPE---------------------------DLPDGVATLVTDEP  152 (246)
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCcccccc---------------------------cCCCCceEEecCCH
Confidence            3799999999999999985 8999999999987531100                           00123343322222


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                                .+.+..+.+++.+|=++|+.-.|.+.|..+|++..
T Consensus       153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~  187 (246)
T TIGR02964       153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGD  187 (246)
T ss_pred             ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCC
Confidence                      12333355678888888999999999999995433

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.98  E-value=0.047  Score=56.06  Aligned_cols=90  Identities=19%  Similarity=0.266  Sum_probs=63.2

Q ss_pred             ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 015895          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (398)
Q Consensus       162 ~l~gktvGIIGl----------G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~  231 (398)
                      .+.|++|+|+|+          ..-...+++.| ...|++|.+|||........            .     .....+++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~------------~-----~~~~~~~~  371 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK------------G-----LPLIDDLE  371 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh------------h-----cccCCCHH
Confidence            479999999998          45778899998 68999999999986542111            0     01136788


Q ss_pred             HHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       232 ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      +.++.||.|+++.+- ++-+. ++-+.+..+-...+++|+
T Consensus       372 ~~~~~ad~~v~~t~~-~~~~~-~~~~~~~~~~~~~~v~D~  409 (411)
T TIGR03026       372 EALKGADALVILTDH-DEFKD-LDLEKIKDLMKGKVVVDT  409 (411)
T ss_pred             HHHhCCCEEEEecCC-HHHhc-cCHHHHHHhcCCCEEEeC
Confidence            999999999999985 33222 454445443335578874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.95  E-value=0.017  Score=50.36  Aligned_cols=122  Identities=16%  Similarity=0.147  Sum_probs=72.0

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCccccc-cCCHHHHhhcCCEEEEccC
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKR-ASSMDEVLREADVISLHPV  245 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~sl~ell~~aDiV~l~~P  245 (398)
                      |.|+|.|.||.-+|.+| +..|.+|..+++.. . .+...+ .+-.+.... ........ .....+-...+|+|++++.
T Consensus         1 I~I~G~GaiG~~~a~~L-~~~g~~V~l~~r~~-~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARL-AQAGHDVTLVSRSP-R-LEAIKE-QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHH-HHTTCEEEEEESHH-H-HHHHHH-HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHH-HHCCCceEEEEccc-c-HHhhhh-eeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            68999999999999998 46899999999877 2 111111 010011101 00000001 1112245688999999997


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEe
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAal  296 (398)
                      . .++...+.. .-..+.+++.++-.--| +-.++.+.+.+...++.++..
T Consensus        77 a-~~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~  124 (151)
T PF02558_consen   77 A-YQLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT  124 (151)
T ss_dssp             G-GGHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred             c-cchHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence            5 455665544 55556677677766554 555777777775556655443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.95  E-value=0.011  Score=59.89  Aligned_cols=94  Identities=23%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             EEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhh-hhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      |+|+|.|.+|+.+++.|++.... +|++.|++.....+ ..+. .......   .........+++++++++|+|+.|+|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~-~~~~~~~~~~~~---~~~d~~~~~~l~~~~~~~dvVin~~g   76 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAER-LAEKLLGDRVEA---VQVDVNDPESLAELLRGCDVVINCAG   76 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH-HHT--TTTTEEE---EE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH-HHhhccccceeE---EEEecCCHHHHHHHHhcCCEEEECCc
Confidence            78999999999999998655556 99999999865321 1110 0000000   00011112347889999999999998


Q ss_pred             CChhhhhhccHHH-HhcCCCCcEEEEc
Q 015895          246 LDKTTYHLINKER-LATMKKEAILVNC  271 (398)
Q Consensus       246 lt~~T~~li~~~~-~~~mk~gailIN~  271 (398)
                      -.      .+... -..++.|.-.||+
T Consensus        77 p~------~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   77 PF------FGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             GG------GHHHHHHHHHHHT-EEEES
T ss_pred             cc------hhHHHHHHHHHhCCCeecc
Confidence            43      12222 2223456666663

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.90  E-value=0.033  Score=47.10  Aligned_cols=100  Identities=13%  Similarity=0.197  Sum_probs=64.3

Q ss_pred             CeEEEEe----cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIG----lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      |++.|||    -+..|..+.+.| +..|.+|+..+|.....                   .+...+.+++|.-...|+++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav   60 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV   60 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence            6899999    799999999998 67999999998866321                   12234567887448899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      +++|. +.+..++.  .+..+..+.+++..+    ..++++.+.+++..+.
T Consensus        61 v~~~~-~~~~~~v~--~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   61 VCVPP-DKVPEIVD--EAAALGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             E-S-H-HHHHHHHH--HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             EEcCH-HHHHHHHH--HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            99994 34455553  233346677888877    5667788888876654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.83  E-value=0.043  Score=53.91  Aligned_cols=73  Identities=15%  Similarity=0.342  Sum_probs=42.6

Q ss_pred             EEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      |+|||.|.||..+|..++. +++ +|+.+|+..........+.... ..... .........+.++ ++.||+|+++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~-~~~~~-~~~~I~~t~d~~~-l~dADiVIit~   74 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQA-APILG-SDTKVTGTNDYED-IAGSDVVVITA   74 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHh-hhhcC-CCeEEEEcCCHHH-hCCCCEEEEec
Confidence            6899999999999988742 334 9999999864321111111100 01111 1112222235554 79999999876

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.83  E-value=0.03  Score=54.65  Aligned_cols=79  Identities=18%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.|+++.|||.|.+|++++..| ...|+ +|.+++|+.... +.+.+.+.    .... ........++.+.+.++|+|
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~~----~~~~-~~~~~~~~~~~~~~~~~DiV  194 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLGV----QVGV-ITRLEGDSGGLAIEKAAEVL  194 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHhh----hcCc-ceeccchhhhhhcccCCCEE
Confidence            46789999999999999999998 57887 799999987542 22222211    0000 00000001234556789999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      +.++|..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9999963

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.82  E-value=0.059  Score=55.84  Aligned_cols=122  Identities=14%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE--------EcCChhh--H---HHHHHhhhhhhhhhc-CCCCcccc
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQAT--R---LEKFVTAYGQFLKAN-GEQPVTWK  225 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~--------~d~~~~~--~---~~~~~~~~~~~~~~~-~~~~~~~~  225 (398)
                      |.++.|+||.|=|+|++|+..|+.| ..+|++|++        ||+.--.  .   +..+.+..++..... ...+ +..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~  300 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GST  300 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCE
Confidence            3479999999999999999999998 689999999        8855321  1   111111100000000 0000 111


Q ss_pred             ccCCHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       226 ~~~sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk--~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      .. +-++++ ..||+++-|.     +.+.|+.+...++.  +-.+++-.|-| ++..+|- +.|++..|
T Consensus       301 ~i-~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI  361 (445)
T PRK14030        301 FF-AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ  361 (445)
T ss_pred             Ec-CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence            11 223333 4699887654     57888888777772  23466666666 5555543 55555544

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.79  E-value=0.53  Score=47.15  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+.|++|++||-+  ++.++.+..+ ..||++|.+..|..-.-.+.+.+......+..|   ..+....++++++++||+
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv  227 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADV  227 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            3889999999997  7888888876 589999998877532111111110000011112   123334689999999999


Q ss_pred             EEEccCC--C-----hhh-----hhhccHHHHh-cCCCCcEEEEc
Q 015895          240 ISLHPVL--D-----KTT-----YHLINKERLA-TMKKEAILVNC  271 (398)
Q Consensus       240 V~l~~Pl--t-----~~T-----~~li~~~~~~-~mk~gailIN~  271 (398)
                      |..-+=.  .     ++-     .--++++.++ .+|+++++.-|
T Consensus       228 vyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~  272 (331)
T PRK02102        228 IYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC  272 (331)
T ss_pred             EEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence            9763210  0     010     1124566666 46777777655

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.72  E-value=0.042  Score=51.84  Aligned_cols=107  Identities=24%  Similarity=0.227  Sum_probs=64.2

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Cccc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVTW  224 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~~  224 (398)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-..  + +++           .+.....+.+.... ....
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~   95 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA   95 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999985 6676 788887654210  0 000           00000111111100 0000


Q ss_pred             -c-c--cCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          225 -K-R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       225 -~-~--~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                       . .  ..+++++++++|+|+.|+. +.+++.++++.....   +..+|.++
T Consensus        96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g  143 (228)
T cd00757          96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA  143 (228)
T ss_pred             ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence             0 1  1235678889999999886 577888887665543   45667764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.66  E-value=0.33  Score=47.33  Aligned_cols=192  Identities=21%  Similarity=0.194  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC----Cc-------
Q 015895          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------  190 (398)
Q Consensus       122 ~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f----G~-------  190 (398)
                      .+|=.+++-+|+.+|-                     .|..|.+.+|.|+|.|.-|-.+|+.+. ..    |.       
T Consensus         3 GTa~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~   60 (279)
T cd05312           3 GTAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARK   60 (279)
T ss_pred             hHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccC
Confidence            3556677777777772                     345788999999999999999999874 43    65       


Q ss_pred             EEEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          191 NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       191 ~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      +++.+|+..-     ..+..+...|..   . . .+   ....+|.|+++  +.|+++-+--    .-++|.++.++.|.
T Consensus        61 ~i~~vD~~Gll~~~r~~l~~~~~~~a~---~-~-~~---~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma  128 (279)
T cd05312          61 KIWLVDSKGLLTKDRKDLTPFKKPFAR---K-D-EE---KEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMA  128 (279)
T ss_pred             eEEEEcCCCeEeCCCCcchHHHHHHHh---h-c-Cc---ccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHH
Confidence            8888887621     011122222211   1 1 00   12358999999  8899985431    24789999999998


Q ss_pred             ---CCcEEEEcCCCchhcHHHHHHHHh--cCC-ccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCCcHH-----HHHH
Q 015895          264 ---KEAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKW-----TREG  331 (398)
Q Consensus       264 ---~gailIN~aRG~~vde~aL~~aL~--~g~-i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~T~e-----a~~~  331 (398)
                         +..++.=.|....--|-.=.++.+  +|+ |.+.|.-.-..+..-. ..--+-.|+++-|-++-....     --+.
T Consensus       129 ~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~  208 (279)
T cd05312         129 KSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDE  208 (279)
T ss_pred             hcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHH
Confidence               899999999876522222223333  354 5555431111111000 112345689999988753221     1245


Q ss_pred             HHHHHHHHHHHHHcCC
Q 015895          332 MATLAALNVLGKIKGY  347 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~  347 (398)
                      |...+++.|..+..-+
T Consensus       209 m~~aAA~aLA~~~~~~  224 (279)
T cd05312         209 MFLAAAEALASLVTDE  224 (279)
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            5566666666655443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.65  E-value=0.095  Score=54.37  Aligned_cols=124  Identities=19%  Similarity=0.143  Sum_probs=67.9

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCC-------h--hhHHHHHHh---hhhhhhhhcCCCCccccc
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------Q--ATRLEKFVT---AYGQFLKANGEQPVTWKR  226 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~-------~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~  226 (398)
                      +.++.|+|+.|=|+|++|+..|+.| ..+|++|+ +.|.+       -  ...+..+.+   .....+........+...
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~  310 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY  310 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence            3579999999999999999999998 68999999 55544       0  111111010   000000000000001111


Q ss_pred             cCCHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       227 ~~sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~m-k~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      . +-++++ -.||+.+-|.     +.+.|+.+....+ +.++.+|--+--.....+| .+.|++..|
T Consensus       311 ~-~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA-~~~L~~~GI  370 (454)
T PTZ00079        311 V-PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIEA-THLFKKNGV  370 (454)
T ss_pred             e-CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHHH-HHHHHHCCc
Confidence            1 222222 4799888664     5777888877755 5555555544433444443 355555544

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=95.61  E-value=2.1  Score=42.38  Aligned_cols=103  Identities=19%  Similarity=0.218  Sum_probs=63.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.|++|+++|= +++.++.+..+ ..+|++|....|..-.......+.+   ....|   ..+....++++.+++||+|
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvv  221 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVV  221 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEE
Confidence            378999999998 78999999887 6899999998875321111111100   01112   1233346899999999999


Q ss_pred             EEc----cCCCh---h-----hhhhccHHHHhcCCCCcEEEEc
Q 015895          241 SLH----PVLDK---T-----TYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       241 ~l~----~Plt~---~-----T~~li~~~~~~~mk~gailIN~  271 (398)
                      ..-    .+...   +     ..--++++.++.+|+++++.-|
T Consensus       222 y~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp  264 (304)
T PRK00779        222 YTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC  264 (304)
T ss_pred             EecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence            764    22111   1     0112456666667777666655

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.60  E-value=0.052  Score=51.28  Aligned_cols=96  Identities=9%  Similarity=0.067  Sum_probs=62.2

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcC
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREA  237 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sl~ell~~a  237 (398)
                      .--+++|++|.|||-|.++..=++.| ..+|++|.++.|...+.+..+.+        .+.  ..+.. ..+.. -+..+
T Consensus        19 i~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~~~-dl~g~   86 (223)
T PRK05562         19 ISLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYDKE-FIKDK   86 (223)
T ss_pred             eEEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChH-HhCCC
Confidence            33567899999999999999977777 58999999999988766544211        111  11111 11223 35789


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      ++|+.++.. ++    +|+...+.++...+++|+
T Consensus        87 ~LViaATdD-~~----vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         87 HLIVIATDD-EK----LNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             cEEEECCCC-HH----HHHHHHHHHHHcCCeEEE
Confidence            999988863 22    455555555554455554

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.56  E-value=0.047  Score=53.93  Aligned_cols=74  Identities=20%  Similarity=0.240  Sum_probs=46.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|+|||.|.+|..+|..+ ...|  .+|..+|+..........+.     .....  .+... ...+. +.++.||+|+
T Consensus         1 mkI~IIGaG~VG~~~a~~l-~~~g~~~ev~l~D~~~~~~~g~a~dl-----~~~~~~~~~~~i-~~~d~-~~l~~aDiVi   72 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYAL-LLRGLASEIVLVDINKAKAEGEAMDL-----AHGTPFVKPVRI-YAGDY-ADCKGADVVV   72 (308)
T ss_pred             CEEEEECCCHHHHHHHHHH-HHcCCCCEEEEEECCchhhhhHHHHH-----HccccccCCeEE-eeCCH-HHhCCCCEEE
Confidence            4799999999999999987 4556  68999999764321111111     10000  00111 12344 4579999999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      ++.+..
T Consensus        73 ita~~~   78 (308)
T cd05292          73 ITAGAN   78 (308)
T ss_pred             EccCCC
Confidence            998863

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=95.53  E-value=0.076  Score=53.02  Aligned_cols=164  Identities=18%  Similarity=0.200  Sum_probs=110.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el---l~~aDiV~l  242 (398)
                      ..+|+||++-|||.++-.+ ...|..|.+|+|+.+...+- +..     ++.+..   .....|++|+   +++--.|++
T Consensus         7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD~f-lan-----eak~~~---i~ga~S~ed~v~klk~PR~iil   76 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVDEF-LAN-----EAKGTK---IIGAYSLEDFVSKLKKPRVIIL   76 (487)
T ss_pred             cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHHHH-HHH-----hhcCCc---ccCCCCHHHHHHhcCCCcEEEE
Confidence            4599999999999999987 58899999999998764332 111     111211   2224577777   455566766


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia  322 (398)
                      .+-...-...+| ++....|.+|-++||-+-..--|+..=.+.|....|...+.-|...|--...    -|.  +.|   
T Consensus        77 lvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~----GPS--lMp---  146 (487)
T KOG2653|consen   77 LVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY----GPS--LMP---  146 (487)
T ss_pred             EeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc----CCc--cCC---
Confidence            665444444444 6788889999999999999999999999999998899999999988753211    111  122   


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 015895          323 SASKWTREGMATLAALNVLGKIKGYPI  349 (398)
Q Consensus       323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~  349 (398)
                      |.+.++...+-.++-.-....-+|+|.
T Consensus       147 Gg~~~Awp~ik~ifq~iaakv~~~epC  173 (487)
T KOG2653|consen  147 GGSKEAWPHIKDIFQKIAAKVSDGEPC  173 (487)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCCC
Confidence            445666666655443332222355553

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.51  E-value=0.048  Score=56.92  Aligned_cols=77  Identities=14%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+|+||+|.|||-|.++..=++.| ..+|++|.++.|...+++..+.+        .+.  ..+..-.-.++.++.+++|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~--------~~~--i~~~~~~~~~~dl~~~~lv   76 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD--------AGM--LTLVEGPFDESLLDTCWLA   76 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChHHhCCCEEE
Confidence            579999999999999999978877 58999999999887665443211        111  1121111123456889998


Q ss_pred             EEccCCCh
Q 015895          241 SLHPVLDK  248 (398)
Q Consensus       241 ~l~~Plt~  248 (398)
                      +.++...+
T Consensus        77 ~~at~d~~   84 (457)
T PRK10637         77 IAATDDDA   84 (457)
T ss_pred             EECCCCHH
Confidence            88887543

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=95.50  E-value=1.4  Score=44.25  Aligned_cols=78  Identities=15%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+.|++|++||-+  ++..+.+..+ ..||+++.+..|..-.-...+.+......+..|   ..+....++++.+++||+
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDv  228 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADF  228 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4889999999976  6899998886 589999999887532111111110000011112   123345789999999999


Q ss_pred             EEEc
Q 015895          240 ISLH  243 (398)
Q Consensus       240 V~l~  243 (398)
                      |..-
T Consensus       229 vytd  232 (336)
T PRK03515        229 IYTD  232 (336)
T ss_pred             EEec
Confidence            9763

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.49  E-value=0.031  Score=57.43  Aligned_cols=109  Identities=18%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      .++|.|||+|.+|.++|+.| +..|++|.++|++.......  ..    ...      .+  ....+.+..++|+|+.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~--~~----~~~------~~--~~~~~~~~~~~dlvV~s~   67 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC--PY----IHE------RY--LENAEEFPEQVDLVVRSP   67 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh--HH----Hhh------hh--cCCcHHHhcCCCEEEECC
Confidence            36899999999999999997 78999999999876431100  00    000      00  112334457799998887


Q ss_pred             CCChhhhh----------hccHHH--Hhc--C-CCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          245 VLDKTTYH----------LINKER--LAT--M-KKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       245 Plt~~T~~----------li~~~~--~~~--m-k~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +..+...-          ++.+..  +..  + +.-.+-|-=+-|..--..=|...|+.
T Consensus        68 gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         68 GIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence            65432111          222212  221  2 22245566666777666666777764

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=95.49  E-value=0.019  Score=58.12  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .++|||||-|..|+.++..+ +.+|.+|+++|+++..
T Consensus         2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~   37 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS   37 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence            37899999999999999985 7899999999997643

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=95.48  E-value=2.2  Score=42.69  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+.|++|++||=+  ++.++.+..+ ..||++|....|..-.-.+.+.+.........|   ..+....++++.+++||+
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv  227 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDV  227 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            3889999999975  8888988886 689999999887521100111100000001112   123345789999999999


Q ss_pred             EEEcc----CCCh----hh-----hhhccHHHHhcCC-CCcEEEEc
Q 015895          240 ISLHP----VLDK----TT-----YHLINKERLATMK-KEAILVNC  271 (398)
Q Consensus       240 V~l~~----Plt~----~T-----~~li~~~~~~~mk-~gailIN~  271 (398)
                      |..-.    ....    +-     .--++++.++.+| +++++.-|
T Consensus       228 vy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp  273 (332)
T PRK04284        228 IYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC  273 (332)
T ss_pred             EEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence            97632    1100    10     1124677777775 47777766

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.45  E-value=0.11  Score=54.62  Aligned_cols=114  Identities=16%  Similarity=0.144  Sum_probs=70.9

Q ss_pred             ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhh----hhhhcC------CCC
Q 015895          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP  221 (398)
Q Consensus       162 ~l~gktvGIIGl----------G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~  221 (398)
                      .+.|++|+|+|+          ..-...+++.| ...|.+|.+|||........  ..+..    +-....      ..+
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  397 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV  397 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence            589999999998          56788899998 68999999999986432111  00000    000000      000


Q ss_pred             ccccccCCHHHHhhcCCEEEEccCCChhhhhhccHH-HHhcCCCCcEEEEcCCCchhcHHHH
Q 015895          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVAL  282 (398)
Q Consensus       222 ~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~-~~~~mk~gailIN~aRG~~vde~aL  282 (398)
                      .......++++.++.||+|+++++- ++-+. ++-+ ....|++..+++|+ |+ ++|.+.+
T Consensus       398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~  455 (473)
T PLN02353        398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKL  455 (473)
T ss_pred             cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            0112345677899999999999985 33333 3433 35668766689985 43 4566554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.43  E-value=0.11  Score=51.03  Aligned_cols=107  Identities=18%  Similarity=0.155  Sum_probs=69.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .|++++|||--.=-..++++| ...|++|+.+.-.....                 ...+.....+.++++++||+|++-
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~~-----------------~~~g~~~~~~~~~~~~~ad~ii~~   62 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLDH-----------------GFTGATKSSSLEEALSDVDVIILP   62 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEecccccc-----------------ccCCceeeccHHHHhccCCEEEEC
Confidence            378999999998889999998 68899988753211100                 011233345678889999999999


Q ss_pred             cCCChhhh---h-------hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895          244 PVLDKTTY---H-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       244 ~Plt~~T~---~-------li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      +|.+.+..   .       -++.+.++.|++|..++ ++.+..-    +-+.+++.++..
T Consensus        63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~  117 (296)
T PRK08306         63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKL  117 (296)
T ss_pred             CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeE
Confidence            88754321   1       13578999999998444 3443322    234455555544

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.38  E-value=2.8  Score=41.47  Aligned_cols=65  Identities=18%  Similarity=0.333  Sum_probs=47.8

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+.|++|+++|=   +++..+.+..+ ..||+++.+..|..-. .             ....  ......+++|.++.||
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~-~-------------~~~~--~~~~~~d~~ea~~~aD  215 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLL-P-------------EGMP--EYGVHTDLDEVIEDAD  215 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccC-c-------------cccc--ceEEECCHHHHhCCCC
Confidence            388999999998   58999999986 6899999998874311 0             0000  1233568999999999


Q ss_pred             EEEEc
Q 015895          239 VISLH  243 (398)
Q Consensus       239 iV~l~  243 (398)
                      +|..-
T Consensus       216 vvyt~  220 (305)
T PRK00856        216 VVMML  220 (305)
T ss_pred             EEEEC
Confidence            99763

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.36  E-value=0.083  Score=53.14  Aligned_cols=96  Identities=17%  Similarity=0.262  Sum_probs=55.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcC-CcEEE-EEcCChhh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLI-YYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~f-G~~V~-~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++|+|+|. |.+|+++++.| ..+ +.++. .++++.+.  ....   .+. ++.  +.....+.. .+.++++.++|+|
T Consensus         1 ~kVaIiGATG~vG~ellr~L-~~hP~~el~~l~~s~~sagk~~~~---~~~-~l~--~~~~~~~~~-~~~~~~~~~~DvV   72 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLL-LNHPEVEITYLVSSRESAGKPVSE---VHP-HLR--GLVDLNLEP-IDEEEIAEDADVV   72 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHH-HcCCCceEEEEeccchhcCCChHH---hCc-ccc--ccCCceeec-CCHHHhhcCCCEE
Confidence            47999998 99999999998 466 67877 44654421  1111   000 000  000111111 2456666789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      ++|+|.. ....+. .+.   .+.|..+||.|-.
T Consensus        73 f~alP~~-~s~~~~-~~~---~~~G~~VIDlS~~  101 (346)
T TIGR01850        73 FLALPHG-VSAELA-PEL---LAAGVKVIDLSAD  101 (346)
T ss_pred             EECCCch-HHHHHH-HHH---HhCCCEEEeCChh
Confidence            9999953 223322 111   2568999999853

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.35  E-value=0.11  Score=56.12  Aligned_cols=134  Identities=16%  Similarity=0.207  Sum_probs=80.1

Q ss_pred             CCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccc-cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEE
Q 015895          118 VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYY  195 (398)
Q Consensus       118 ~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~  195 (398)
                      .+....||.++-|=|-++|                |.-....+ ..|++.+|.|||.|.+|..+|+.| .+.|. ++...
T Consensus       306 mdP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlV  368 (664)
T TIGR01381       306 FDPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFV  368 (664)
T ss_pred             cCHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEE
Confidence            3556778888887777777                64322122 568999999999999999999998 47776 67777


Q ss_pred             cCChhh----------HHHH-------HHhhhhhhhhhcCC-CCc-cc-----------c---------ccCCHHHHhhc
Q 015895          196 DLYQAT----------RLEK-------FVTAYGQFLKANGE-QPV-TW-----------K---------RASSMDEVLRE  236 (398)
Q Consensus       196 d~~~~~----------~~~~-------~~~~~~~~~~~~~~-~~~-~~-----------~---------~~~sl~ell~~  236 (398)
                      |...-.          ..+.       ..+.....+.+... ... ++           .         ....+.+++++
T Consensus       369 D~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~  448 (664)
T TIGR01381       369 DNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKD  448 (664)
T ss_pred             cCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhh
Confidence            743210          0000       00000011111100 000 00           0         00236788999


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|+|+.++. +.++|-+++..-...   +..+|+.+
T Consensus       449 ~DvV~d~tD-n~esR~L~n~~c~~~---~kplI~aA  480 (664)
T TIGR01381       449 HDVVFLLLD-SREARWLPTVLCSRH---KKIAISAA  480 (664)
T ss_pred             CCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEE
Confidence            999999996 678998887655543   44566554

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.35  E-value=0.046  Score=47.62  Aligned_cols=86  Identities=23%  Similarity=0.300  Sum_probs=50.7

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt  247 (398)
                      +-|+|.|.+++++++.+ +.+|++|.++|+++..                                +..++-+. +.+. 
T Consensus         1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~-   45 (136)
T PF13478_consen    1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP-   45 (136)
T ss_dssp             EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred             CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence            46899999999999985 8999999999987421                                11333322 2221 


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEe
Q 015895          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (398)
Q Consensus       248 ~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAal  296 (398)
                      ++..     +.+ .+.+++.+| ++++.-.|...|..+|++ .....|+
T Consensus        46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence            1111     111 456666666 888888999999999887 4455444

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.35  E-value=0.71  Score=46.70  Aligned_cols=78  Identities=21%  Similarity=0.252  Sum_probs=47.2

Q ss_pred             ccCCCeEEEEecC--------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 015895          162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (398)
Q Consensus       162 ~l~gktvGIIGlG--------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el  233 (398)
                      .++|++|+|+|.|        ++.++.+..+ ..|||+|.+..|..-.-.+...+......+..|   ..+....+++|.
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~~ea  242 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENG---GKFNIVNSMDEA  242 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            3889999999853        4456777776 589999999987631101111110000011112   223345789999


Q ss_pred             hhcCCEEEEc
Q 015895          234 LREADVISLH  243 (398)
Q Consensus       234 l~~aDiV~l~  243 (398)
                      ++++|+|..-
T Consensus       243 ~~~aDvvyt~  252 (357)
T TIGR03316       243 FKDADIVYPK  252 (357)
T ss_pred             hCCCCEEEEC
Confidence            9999999764

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.32  E-value=0.19  Score=51.85  Aligned_cols=118  Identities=19%  Similarity=0.161  Sum_probs=68.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc-CCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~-aDiV  240 (398)
                      ++.||++.|+|.|.+|.++|+.| ...|++|.++|.......+. .+    .+...+.   .........+++.. +|+|
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g~---~~~~~~~~~~~~~~~~d~v   72 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEGI---KVICGSHPLELLDEDFDLM   72 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcCC---EEEeCCCCHHHhcCcCCEE
Confidence            36789999999999999999998 68999999999764321110 00    0112221   11111122344444 8988


Q ss_pred             EEcc--CCC-hhh-------hhhccHH-HHhcC-CCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          241 SLHP--VLD-KTT-------YHLINKE-RLATM-KKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       241 ~l~~--Plt-~~T-------~~li~~~-~~~~m-k~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +...  |.+ +.-       ..++.+. .+..+ +...+-|--+.|..--..-+...|+.
T Consensus        73 V~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~  132 (447)
T PRK02472         73 VKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA  132 (447)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            8765  322 211       1123332 22233 44456666677888777767777764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.32  E-value=0.11  Score=51.06  Aligned_cols=126  Identities=14%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|+|+|.|.||+-+|-+| ...|.+|..++|... ..+.+.+.-+-.+...+.. ..+.......+....+|+|++++-
T Consensus         3 m~I~IiGaGaiG~~~a~~L-~~~G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK   79 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRL-ARAGLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK   79 (305)
T ss_pred             ceEEEECCCHHHHHHHHHH-HhCCCCeEEEEechH-HHHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence            5799999999999999998 467999999998652 2222111000001111110 000000111122467899999986


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD  297 (398)
                      .. ++...+ +.....+.+++.+|-+--| +-.++.+.+.+...++.++..-
T Consensus        80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~~  128 (305)
T PRK05708         80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASST  128 (305)
T ss_pred             HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEee
Confidence            43 344433 3455567788887777544 4556677788776666665443

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.25  E-value=0.13  Score=53.43  Aligned_cols=132  Identities=22%  Similarity=0.261  Sum_probs=78.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ..+|+|.|+|+|.-|.++|+.| ...|++|+++|.++.+. .+...      ....+   ..+..-.-..+.+..+|+|+
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~------~~~~~---i~~~~g~~~~~~~~~~d~vV   74 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP------LLLEG---IEVELGSHDDEDLAEFDLVV   74 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh------hhccC---ceeecCccchhccccCCEEE
Confidence            4499999999999999999998 68999999999766541 01000      00011   11111111226678899999


Q ss_pred             EccCCChhhh----------hhcc-HHHHhcC--CCCcEEEEcCCCchhcHHHHHHHHhc--------CCccEEEeccCC
Q 015895          242 LHPVLDKTTY----------HLIN-KERLATM--KKEAILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFE  300 (398)
Q Consensus       242 l~~Plt~~T~----------~li~-~~~~~~m--k~gailIN~aRG~~vde~aL~~aL~~--------g~i~gAalDV~~  300 (398)
                      ...-..+.+.          .+++ =+.|.+.  +.-.+-|.-+-|..--+.-+...|++        |.|...++|+..
T Consensus        75 ~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~  154 (448)
T COG0771          75 KSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLE  154 (448)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhc
Confidence            8743322222          1122 2233332  22245555566776666666666654        566778899998


Q ss_pred             CCCC
Q 015895          301 DEPY  304 (398)
Q Consensus       301 ~EP~  304 (398)
                      +++.
T Consensus       155 ~~~~  158 (448)
T COG0771         155 QAEP  158 (448)
T ss_pred             ccCC
Confidence            7443

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.24  E-value=0.46  Score=52.51  Aligned_cols=165  Identities=20%  Similarity=0.270  Sum_probs=109.6

Q ss_pred             cCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 015895          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (398)
Q Consensus       108 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~  187 (398)
                      ..|+|.|+.   -..+|=.+++-+++.+|-                     .|+.+...+|.|.|.|.-|-.+|+.| ..
T Consensus       152 ~~ip~f~DD---~~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~  206 (752)
T PRK07232        152 MDIPVFHDD---QHGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-VA  206 (752)
T ss_pred             cCCCeeccc---cchHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-HH
Confidence            468999983   345677788888888872                     34578899999999999999999998 56


Q ss_pred             CCc---EEEEEcCChh------hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH
Q 015895          188 FKM---NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (398)
Q Consensus       188 fG~---~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~  258 (398)
                      .|.   +++.+|+..-      .....+...|.    +.       ....+|+|+++.+|+++-.-     +.++|.++.
T Consensus       207 ~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a----~~-------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~  270 (752)
T PRK07232        207 LGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA----VD-------TDARTLAEAIEGADVFLGLS-----AAGVLTPEM  270 (752)
T ss_pred             cCCCcccEEEEcCCCeecCCCcccccHHHHHHh----cc-------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence            787   7888886521      00111111110    00       12258999999999887432     148899999


Q ss_pred             HhcCCCCcEEEEcCCCchh-cHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCC
Q 015895          259 LATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       259 ~~~mk~gailIN~aRG~~v-de~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~  323 (398)
                      ++.|.+..++.=.|....- ..++.+ ....|.|.+.|   -...|.      +-.|+++-|-++-
T Consensus       271 v~~M~~~piifalsNP~~E~~p~~a~-~~~~~~i~atG---rs~~pn------Q~NN~~~FPgi~~  326 (752)
T PRK07232        271 VKSMADNPIIFALANPDPEITPEEAK-AVRPDAIIATG---RSDYPN------QVNNVLCFPYIFR  326 (752)
T ss_pred             HHHhccCCEEEecCCCCccCCHHHHH-HhcCCEEEEEC---CcCCCC------cccceeecchhhH
Confidence            9999999999999987752 222222 22223455544   112221      4468888887654

>PRK12862 malic enzyme; Reviewed

Probab=95.22  E-value=0.54  Score=52.12  Aligned_cols=164  Identities=18%  Similarity=0.229  Sum_probs=109.1

Q ss_pred             CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 015895          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (398)
Q Consensus       109 gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f  188 (398)
                      +|+|.|+.-   ..+|=.+++-+++.+|-                     .|+.+...+|.|.|.|.-|-.+|+.| ...
T Consensus       161 ~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~~  215 (763)
T PRK12862        161 KIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VSL  215 (763)
T ss_pred             CCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HHc
Confidence            599999843   45677788888888772                     34578899999999999999999998 567


Q ss_pred             Cc---EEEEEcCChh------hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895          189 KM---NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (398)
Q Consensus       189 G~---~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~  259 (398)
                      |.   +++.+|+..-      ..+..+...|.   +.        ....+|+|+++.+|+++-.-     +.++|.++.+
T Consensus       216 G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~--------~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v  279 (763)
T PRK12862        216 GVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QK--------TDARTLAEVIEGADVFLGLS-----AAGVLKPEMV  279 (763)
T ss_pred             CCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hh--------cccCCHHHHHcCCCEEEEcC-----CCCCCCHHHH
Confidence            87   7999985420      00111111111   10        01258999999999987433     1478999999


Q ss_pred             hcCCCCcEEEEcCCCchh-cHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCC
Q 015895          260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       260 ~~mk~gailIN~aRG~~v-de~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~  323 (398)
                      +.|.+..++.=+|....- ..+..+++ ..|.|.+.|-   ...|      -+-.|+++-|-++-
T Consensus       280 ~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGr---s~~p------~Q~NN~~~FPgi~~  334 (763)
T PRK12862        280 KKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGR---SDYP------NQVNNVLCFPYIFR  334 (763)
T ss_pred             HHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECC---cCCC------Ccccceeeccchhh
Confidence            999999999999987642 22222222 2234555441   1112      14458889887764

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.21  E-value=0.11  Score=48.70  Aligned_cols=37  Identities=35%  Similarity=0.452  Sum_probs=31.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~  198 (398)
                      ..|+.++|.|||+|.+|..+|+.|+ ..|. ++..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence            4589999999999999999999985 5666 58888877

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.20  E-value=0.085  Score=53.81  Aligned_cols=108  Identities=16%  Similarity=0.212  Sum_probs=63.0

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH-HHhhcCCE
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADV  239 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~-ell~~aDi  239 (398)
                      ...++|+|+|. |.+|+++.+.| ... ++++..+.+..+.- ..+.+.+ .++.. +  .  .....+++ +.++++|+
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL-~~hP~~el~~l~s~~saG-~~i~~~~-~~l~~-~--~--~~~~~~~~~~~~~~~Dv  107 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLL-ANHPDFEITVMTADRKAG-QSFGSVF-PHLIT-Q--D--LPNLVAVKDADFSDVDA  107 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHH-HhCCCCeEEEEEChhhcC-CCchhhC-ccccC-c--c--ccceecCCHHHhcCCCE
Confidence            35568999998 99999999997 455 67888776543221 0000000 00000 0  0  00111222 22488999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~  284 (398)
                      |++++|. ..+.     +....|+.|..+|+.|..--.+.++.++
T Consensus       108 Vf~Alp~-~~s~-----~i~~~~~~g~~VIDlSs~fRl~~~~~y~  146 (381)
T PLN02968        108 VFCCLPH-GTTQ-----EIIKALPKDLKIVDLSADFRLRDIAEYE  146 (381)
T ss_pred             EEEcCCH-HHHH-----HHHHHHhCCCEEEEcCchhccCCcccch
Confidence            9999995 2333     3344456789999998766555554444

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.16  E-value=0.071  Score=56.07  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=67.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      +.|+++.|+|+|.+|.+.++.| +..|++|+++|..... .+.        ++..+.   .........+.++.+|+|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~--------l~~~g~---~~~~~~~~~~~l~~~D~VV~   76 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP--------HAERGV---ATVSTSDAVQQIADYALVVT   76 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH--------HHhCCC---EEEcCcchHhHhhcCCEEEE
Confidence            5789999999999999999986 7999999999975432 221        111221   11111123455678999887


Q ss_pred             ccCCChhhhh----------hccHHHHh-cC--------CCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          243 HPVLDKTTYH----------LINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       243 ~~Plt~~T~~----------li~~~~~~-~m--------k~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +..-.+...-          ++++-.+. ..        +...+-|--+-|+.--..-+...|+.
T Consensus        77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            7543332211          22222221 11        12345566677887766667777765

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.10  E-value=0.45  Score=45.78  Aligned_cols=190  Identities=13%  Similarity=0.093  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCc-----------E
Q 015895          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N  191 (398)
Q Consensus       123 vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~-----------~  191 (398)
                      +|=-+++-+|+.+|-                     .|..|.+.++.|.|.|.-|-.+|+.+. ..++           +
T Consensus         4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~   61 (254)
T cd00762           4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKR   61 (254)
T ss_pred             hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhcc
Confidence            556677777777772                     345788999999999999999999874 4444           6


Q ss_pred             EEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEccCCChhhhhhccHHHHhcCC-
Q 015895          192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK-  263 (398)
Q Consensus       192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l~~Plt~~T~~li~~~~~~~mk-  263 (398)
                      ++.+|+..-     +.+..+...+....+.       .....+|.|+++  +.|+++-..    ...++|.++.++.|. 
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-------~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~  130 (254)
T cd00762          62 IWXVDRKGLLVKNRKETCPNEYHLARFANP-------ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE  130 (254)
T ss_pred             EEEECCCCeEeCCCCccCHHHHHHHHHcCc-------ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence            888887621     0011111110000010       112358999999  999997533    225789999999998 


Q ss_pred             --CCcEEEEcCCCch---hcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCCcHHH-----HHHH
Q 015895          264 --KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWT-----REGM  332 (398)
Q Consensus       264 --~gailIN~aRG~~---vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~T~ea-----~~~~  332 (398)
                        +..++.=.|....   +..++.+++=+-..|.+.+.-.+.++-.-. ...-+-.|+++-|-++-....+     -+.|
T Consensus       131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m  210 (254)
T cd00762         131 INERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDV  210 (254)
T ss_pred             cCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHH
Confidence              8999999988765   233333333222234444442222221100 0123556999999876522211     1344


Q ss_pred             HHHHHHHHHHHHc
Q 015895          333 ATLAALNVLGKIK  345 (398)
Q Consensus       333 ~~~~~~ni~~~l~  345 (398)
                      ...+++.+..+..
T Consensus       211 ~~aAA~aLA~~v~  223 (254)
T cd00762         211 FLSAAEAIASSVT  223 (254)
T ss_pred             HHHHHHHHHhhCC
Confidence            4455555555443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.08  E-value=0.074  Score=53.37  Aligned_cols=99  Identities=21%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH-------------HH---HHHhhhhhhhhhcCCC-Cc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR-------------LE---KFVTAYGQFLKANGEQ-PV  222 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~-------------~~---~~~~~~~~~~~~~~~~-~~  222 (398)
                      ..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-+.             ..   ...+.....+++.... ..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v   98 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV   98 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence            4689999999999999999999985 6677 899999863100             00   0000000111111100 00


Q ss_pred             ccc----ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          223 TWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       223 ~~~----~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      ...    ...++.++++++|+|+.++- +.+++.++++...+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~  140 (339)
T PRK07688         99 EAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQKY  140 (339)
T ss_pred             EEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHh
Confidence            000    11235677888998888875 567788887665543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.05  E-value=0.13  Score=44.50  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=27.5

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~  199 (398)
                      +|.|+|+|.+|.++|+.|+ ..|. ++..+|+..
T Consensus         1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCCC
Confidence            5899999999999999984 6776 799998764

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.04  E-value=0.18  Score=52.04  Aligned_cols=99  Identities=13%  Similarity=0.133  Sum_probs=58.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----HhhcC
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e----ll~~a  237 (398)
                      .+..+++.|+|+|.+|+.+++.| ...|.+|++.|.++... +.+.+.+      .+ .........+.+.    -+.++
T Consensus       228 ~~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~-~~~i~gd~~~~~~L~~~~~~~a  298 (453)
T PRK09496        228 EKPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PN-TLVLHGDGTDQELLEEEGIDEA  298 (453)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CC-CeEEECCCCCHHHHHhcCCccC
Confidence            34578999999999999999998 68999999999887542 2111100      01 0110111122222    25789


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      |.|+++++...  .+++-......+....+++-+
T Consensus       299 ~~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        299 DAFIALTNDDE--ANILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             CEEEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence            99998888543  333333333445444444433

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.03  E-value=1.2  Score=45.77  Aligned_cols=194  Identities=18%  Similarity=0.146  Sum_probs=115.1

Q ss_pred             hcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 015895          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (398)
Q Consensus       107 ~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~  186 (398)
                      +..|+|.|+.-   ..+|=.+++-+|+.+|                     ..|+.|+..+|.+.|.|.-|-.+++.+ .
T Consensus       165 ~~~IPvFhDDq---qGTaiv~lA~llnalk---------------------~~gk~l~d~kiv~~GAGAAgiaia~~l-~  219 (432)
T COG0281         165 RMNIPVFHDDQ---QGTAIVTLAALLNALK---------------------LTGKKLKDQKIVINGAGAAGIAIADLL-V  219 (432)
T ss_pred             cCCCCcccccc---cHHHHHHHHHHHHHHH---------------------HhCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence            45588888644   4567788888888777                     245789999999999999999999998 7


Q ss_pred             cCCc---EEEEEcCChhh--HHHH-HHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHh
Q 015895          187 GFKM---NLIYYDLYQAT--RLEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (398)
Q Consensus       187 ~fG~---~V~~~d~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~  260 (398)
                      +.|+   +|+.+|+..--  ..+. ....+.......  .. .  .... ++.+..+|+++-+--     .+.+.++.++
T Consensus       220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~--~~-~--~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~  288 (432)
T COG0281         220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIE--DT-G--ERTL-DLALAGADVLIGVSG-----VGAFTEEMVK  288 (432)
T ss_pred             HhCCCcccEEEEecCCcccCCCcccccchHHHHHHHh--hh-c--cccc-cccccCCCEEEEcCC-----CCCcCHHHHH
Confidence            8887   69999876311  0000 000000000000  00 0  0011 457889999875542     2899999999


Q ss_pred             cCCCCcEEEEcCCCchhcHHHHHHHHhcC-CccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHH-----HHHHHH
Q 015895          261 TMKKEAILVNCSRGPVIDEVALVEHLKQN-PMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT-----REGMAT  334 (398)
Q Consensus       261 ~mk~gailIN~aRG~~vde~aL~~aL~~g-~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea-----~~~~~~  334 (398)
                      .|.+..++.=.|-...-=.-..+.+...| .|-+-|      -|  +.|- +-.|+++-|.++-....+     -+.|-.
T Consensus       289 ~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG------rs--d~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~  359 (432)
T COG0281         289 EMAKHPIIFALANPTPEITPEDAKEWGDGAAIVATG------RS--DYPN-QVNNVLIFPGIFRGALDVRAKTITDEMKI  359 (432)
T ss_pred             HhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC------CC--CCcc-cccceeEcchhhhhhHhhccccCCHHHHH
Confidence            99999999888876532112222222222 222222      11  1121 567999999987532211     134444


Q ss_pred             HHHHHHHHHHc
Q 015895          335 LAALNVLGKIK  345 (398)
Q Consensus       335 ~~~~ni~~~l~  345 (398)
                      .+++.|.++.+
T Consensus       360 AAa~AiA~~~~  370 (432)
T COG0281         360 AAAEAIADLAR  370 (432)
T ss_pred             HHHHHHHhhcc
Confidence            55555555543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.00  E-value=0.12  Score=52.62  Aligned_cols=89  Identities=24%  Similarity=0.345  Sum_probs=61.0

Q ss_pred             cCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 015895          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (398)
Q Consensus       163 l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e  232 (398)
                      |.||||||+|+-          .--..++++| +..|++|.+|||-.......            . .+ ......++++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~------------~-~~-~~~~~~~~~~  372 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR------------N-FP-DVELESDAEE  372 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh------------c-CC-CceEeCCHHH
Confidence            999999999984          4567788998 79999999999976542211            0 01 1334578999


Q ss_pred             HhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       233 ll~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                      .++.||+++++..- ++-+.+ +-+.+ .|| +.++++
T Consensus       373 ~~~~aDaivi~tew-~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         373 ALKGADAIVINTEW-DEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHhhCCEEEEeccH-HHHhcc-Chhhh-hcc-CCEEEe
Confidence            99999999998852 343433 33333 565 445554

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.99  E-value=0.22  Score=48.78  Aligned_cols=80  Identities=19%  Similarity=0.234  Sum_probs=48.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccC---CHHHHhh
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVLR  235 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---sl~ell~  235 (398)
                      ++.||++.|+|.|..+++++-.+ ...|. +|.+++|+..  .+.+.+.+.+.    ........+....   .+.+.+.
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l-~~~g~~~i~i~nRt~~~~~ka~~la~~~~----~~~~~~~~~~~~~~~~~l~~~~~  195 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQG-AIEGLKEIKLFNRRDEFFDKALAFAQRVN----ENTDCVVTVTDLADQQAFAEALA  195 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCccHHHHHHHHHHHhh----hccCceEEEechhhhhhhhhhcc
Confidence            57889999999999999999877 45676 8999999853  23333222211    0000000111111   1233456


Q ss_pred             cCCEEEEccCC
Q 015895          236 EADVISLHPVL  246 (398)
Q Consensus       236 ~aDiV~l~~Pl  246 (398)
                      ++|+|+.++|.
T Consensus       196 ~aDivINaTp~  206 (288)
T PRK12749        196 SADILTNGTKV  206 (288)
T ss_pred             cCCEEEECCCC
Confidence            78999999885

>PLN02342 ornithine carbamoyltransferase

Probab=94.99  E-value=4.3  Score=40.93  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.|++|+++|= .++-++.+..+ ..||++|....|..-.-.+...+.    .+..+.  ..+....++++.+++||+|
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVv  263 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVV  263 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence            488999999997 35677777765 589999998887532111111110    111111  1233457899999999999


Q ss_pred             EEcc----CCChhh--------hhhccHHHHhcCCCCcEEEEc
Q 015895          241 SLHP----VLDKTT--------YHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       241 ~l~~----Plt~~T--------~~li~~~~~~~mk~gailIN~  271 (398)
                      ..-.    -..++.        .-.++++.++.+|+++++.-|
T Consensus       264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp  306 (348)
T PLN02342        264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC  306 (348)
T ss_pred             EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence            8652    111110        123567777777777777665

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.96  E-value=0.2  Score=49.46  Aligned_cols=91  Identities=12%  Similarity=0.125  Sum_probs=54.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhh-----cC
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLR-----EA  237 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sl~ell~-----~a  237 (398)
                      ..++||||.|+||+..+..+.+.-+.++. ++|+++......+.       ++.|     +. ...+.+++++     +.
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A-------~~~G-----i~~~~~~ie~LL~~~~~~dI   71 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA-------RRLG-----VATSAEGIDGLLAMPEFDDI   71 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH-------HHcC-----CCcccCCHHHHHhCcCCCCC
Confidence            35799999999999977666443356654 56666543211111       1122     21 1357888884     58


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      |+|+.++|..  ...   +-.....+.|..+|+-+
T Consensus        72 DiVf~AT~a~--~H~---e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         72 DIVFDATSAG--AHV---RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             CEEEECCCHH--HHH---HHHHHHHHcCCeEEECC
Confidence            8899999842  211   22233356788888876

>PLN02602 lactate dehydrogenase

Probab=94.96  E-value=0.38  Score=48.49  Aligned_cols=110  Identities=15%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.||+.+|-.++ +++.-++..+|.........-.+..... ...+.  ..+....+.++ +++||+|+++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~--~~i~~~~dy~~-~~daDiVVitA  113 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA-AFLPR--TKILASTDYAV-TAGSDLCIVTA  113 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh-hcCCC--CEEEeCCCHHH-hCCCCEEEECC
Confidence            69999999999999998763 2444589999987643222212211100 00000  11111134555 79999999884


Q ss_pred             CCC--h-hhh-hhcc---------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          245 VLD--K-TTY-HLIN---------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       245 Plt--~-~T~-~li~---------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      -..  + +|| .++.         .+.+....+.+++|+++-  ++|.-.
T Consensus       114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN--Pvdv~t  161 (350)
T PLN02602        114 GARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN--PVDVLT  161 (350)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC--chHHHH
Confidence            331  1 233 2221         123444567889999883  444443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.95  E-value=0.25  Score=50.15  Aligned_cols=37  Identities=30%  Similarity=0.251  Sum_probs=32.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~  198 (398)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence            4689999999999999999999984 6776 78889886

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.95  E-value=0.15  Score=52.58  Aligned_cols=74  Identities=16%  Similarity=0.226  Sum_probs=48.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cc-cccCCHHHH-hhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TW-KRASSMDEV-LREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~sl~el-l~~aDiV~l  242 (398)
                      |++.|+|+|.+|+.+|+.| ...|.+|+++|+++... +...+       ..+.... +. .....++++ +.++|.|++
T Consensus         1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~-------~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~   71 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQD-------RLDVRTVVGNGSSPDVLREAGAEDADLLIA   71 (453)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHh-------hcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence            4799999999999999998 67899999999877542 11100       0110000 00 111235555 788999999


Q ss_pred             ccCCCh
Q 015895          243 HPVLDK  248 (398)
Q Consensus       243 ~~Plt~  248 (398)
                      +++...
T Consensus        72 ~~~~~~   77 (453)
T PRK09496         72 VTDSDE   77 (453)
T ss_pred             ecCChH
Confidence            998643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.87  E-value=0.2  Score=54.19  Aligned_cols=96  Identities=17%  Similarity=0.240  Sum_probs=62.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH---HH-hhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~---el-l~~aDiV  240 (398)
                      ..++-|+|+|++|+.+|+.| ...|.++++.|.++... +.        +++.+. +.-+....+.+   ++ +.+||.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAV-NL--------MRKYGY-KVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence            35799999999999999998 68999999999987642 22        112221 11122223332   22 6789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +++++..+++..++  ...+++.|...+|--+|
T Consensus       469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence            99999755554443  34555666666666555

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.86  E-value=0.1  Score=55.79  Aligned_cols=92  Identities=14%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV~  241 (398)
                      -++-|+|+|++|+.+|+.| +..|.+|++.|.+++.. +.        .++.+. +.-+....+   ++++ ++++|.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~-~~--------~~~~g~-~~i~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRV-DE--------LRERGI-RAVLGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHH-HH--------HHHCCC-eEEEcCCCCHHHHHhcCccccCEEE
Confidence            4689999999999999998 68899999999987542 21        111121 111112223   2222 57899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                      ++++.+.++..++-.  ...+.+...+|-
T Consensus       487 v~~~~~~~~~~iv~~--~~~~~~~~~iia  513 (558)
T PRK10669        487 LTIPNGYEAGEIVAS--AREKRPDIEIIA  513 (558)
T ss_pred             EEcCChHHHHHHHHH--HHHHCCCCeEEE
Confidence            999976665555432  233345555553

>PRK06270 homoserine dehydrogenase; Provisional

Probab=94.84  E-value=0.2  Score=50.27  Aligned_cols=118  Identities=20%  Similarity=0.253  Sum_probs=65.0

Q ss_pred             eEEEEecChhHHHHHHHHHh---------cCCcEEE-EEcCChh---------hHHHHHHhhhhhhhhhcCCCC-c-ccc
Q 015895          167 TVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQA---------TRLEKFVTAYGQFLKANGEQP-V-TWK  225 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~---------~fG~~V~-~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~-~-~~~  225 (398)
                      +|||+|+|.||+.+++.+.+         +.+.+|. +.|+...         .....+.       ...+... . ...
T Consensus         4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~-------~~~~~~~~~~~~~   76 (341)
T PRK06270          4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVK-------EETGKLADYPEGG   76 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHH-------hccCCcccCcccc
Confidence            79999999999999998732         2256755 4454211         1111111       1111000 0 001


Q ss_pred             ccCCHHHHh--hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcCCc
Q 015895          226 RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (398)
Q Consensus       226 ~~~sl~ell--~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g~i  291 (398)
                      ...++++++  ...|+|+.++|....+...--.-....++.|.-+|...-+.+ ..-++|.++.++..+
T Consensus        77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            124788887  468999999996544322211223455667777776544433 235667777776544

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.82  E-value=0.1  Score=49.85  Aligned_cols=106  Identities=19%  Similarity=0.236  Sum_probs=62.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Ccc-
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVT-  223 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~-  223 (398)
                      ..|++++|+|||+|.+|..+|+.|+ ..|. ++..+|...-..  + +++           .+.....+.+.... ... 
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~  106 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET  106 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence            4699999999999999999999985 5665 788887653210  0 000           00001111111100 000 


Q ss_pred             cc-cc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          224 WK-RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       224 ~~-~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      +. ..  .+.+++++++|+|+.++- +.+++..+++.....-   .-+|..
T Consensus       107 ~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~---ip~v~~  153 (245)
T PRK05690        107 INARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAK---KPLVSG  153 (245)
T ss_pred             EeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhC---CEEEEe
Confidence            00 11  124567889999988884 5678888877655543   346654

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=94.82  E-value=0.1  Score=42.39  Aligned_cols=75  Identities=17%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV~l  242 (398)
                      .++.|+|.|+.|++++....+..|++ +.++|..+...               |..-.+...+.+++++.+.  .|+-++
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~---------------G~~i~gipV~~~~~~l~~~~~i~iaii   68 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI---------------GKEIGGIPVYGSMDELEEFIEIDIAII   68 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT---------------TSEETTEEEESSHHHHHHHCTTSEEEE
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc---------------CcEECCEEeeccHHHhhhhhCCCEEEE
Confidence            46999999999999885443344543 35666655431               1111112223477887776  999999


Q ss_pred             ccCCChhhhhhccH
Q 015895          243 HPVLDKTTYHLINK  256 (398)
Q Consensus       243 ~~Plt~~T~~li~~  256 (398)
                      ++|. +..+..+++
T Consensus        69 ~VP~-~~a~~~~~~   81 (96)
T PF02629_consen   69 TVPA-EAAQEVADE   81 (96)
T ss_dssp             ES-H-HHHHHHHHH
T ss_pred             EcCH-HHHHHHHHH
Confidence            9994 344444433

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=94.78  E-value=0.37  Score=48.44  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=66.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|||||. .+|+.-++.++..- +.++. ++|+.... .+.+.+.|       +     +..+.+++|++++.|+++++
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------g-----i~~y~~~eell~d~Di~~V~   69 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------G-----VPLYCEVEELPDDIDIACVV   69 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------C-----CCccCCHHHHhcCCCEEEEE
Confidence            57999999 68999888773322 46655 46776643 33332222       2     12357899999999999999


Q ss_pred             cCCC-hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEE
Q 015895          244 PVLD-KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (398)
Q Consensus       244 ~Plt-~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA  294 (398)
                      +|.+ +...|.  +-..+.++.|.-++.=-=-..-+.++|+++.++..+.-.
T Consensus        70 ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        70 VRSAIVGGQGS--ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             eCCCCCCccHH--HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            9852 222221  223334455544333211113455668888877655544

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.68  E-value=0.31  Score=50.61  Aligned_cols=112  Identities=22%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++.|++|.|+|+|.+|.++|+.| ...|.+|.++|....... .        +...+..   .... .. +-+..+|+|+
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~~-~~~~~~d~vv   70 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-RT-ADWSGFAALV   70 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-Ch-hHHcCCCEEE
Confidence            47789999999999999999987 799999999997644321 1        1112221   1111 11 2346899887


Q ss_pred             Ecc--CCC-h----h---hhhh----ccH-HHHhc-C-----CCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          242 LHP--VLD-K----T---TYHL----INK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       242 l~~--Plt-~----~---T~~l----i~~-~~~~~-m-----k~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      ..-  |.+ +    .   ++..    +.+ +.+.. +     +...+-|.=+.|..--..-|...|+.
T Consensus        71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~  138 (460)
T PRK01390         71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE  138 (460)
T ss_pred             ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence            643  322 1    1   1111    332 22222 2     33456677788998877777777775

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.68  E-value=0.16  Score=50.14  Aligned_cols=102  Identities=21%  Similarity=0.288  Sum_probs=58.9

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH---HHHH-------------HhhhhhhhhhcCCC-Cc-cc---
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR---LEKF-------------VTAYGQFLKANGEQ-PV-TW---  224 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~---~~~~-------------~~~~~~~~~~~~~~-~~-~~---  224 (398)
                      +|.|+|.|.+|..+|+.|+ ..|. ++..+|...-..   -+++             .+.....+++.... .. ++   
T Consensus         1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~   79 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS   79 (307)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence            5899999999999999984 6675 677777442110   0000             00000111111100 00 00   


Q ss_pred             -----------------cccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          225 -----------------KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       225 -----------------~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                                       .....++++++++|+|+.++ .+.++|.+++.--...-|   .+|+.+.
T Consensus        80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~~k---~~I~aal  141 (307)
T cd01486          80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAKNK---LVINAAL  141 (307)
T ss_pred             ccccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHhCC---cEEEEEe
Confidence                             01123678999999999999 468889888765555433   6676544

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK08328 hypothetical protein; Provisional

Probab=94.67  E-value=0.11  Score=49.11  Aligned_cols=106  Identities=23%  Similarity=0.225  Sum_probs=60.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhh-------hh---------hhhhhcCCCCcc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTA-------YG---------QFLKANGEQPVT  223 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~-------~~---------~~~~~~~~~~~~  223 (398)
                      ..|++++|.|+|+|.+|.++|+.|+ ..|. ++..+|...-+. ..+...       .+         ..+..... ...
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np-~v~   99 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPEL-SNLNRQILHWEEDLGKNPKPLSAKWKLERFNS-DIK   99 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccCh-hhhccccccChhhcCchHHHHHHHHHHHHhCC-CCE
Confidence            4689999999999999999999985 5665 688888654211 000000       00         00111000 000


Q ss_pred             cc------ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          224 WK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       224 ~~------~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ..      ...+++++++++|+|+.++-. .+++.++++-..+   .+.-+|+.+-
T Consensus       100 v~~~~~~~~~~~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~---~~ip~i~g~~  151 (231)
T PRK08328        100 IETFVGRLSEENIDEVLKGVDVIVDCLDN-FETRYLLDDYAHK---KGIPLVHGAV  151 (231)
T ss_pred             EEEEeccCCHHHHHHHHhcCCEEEECCCC-HHHHHHHHHHHHH---cCCCEEEEee
Confidence            00      112356678888888888764 5677777653332   3455666543

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.63  E-value=0.18  Score=46.67  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~  199 (398)
                      ..|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|+..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECCc
Confidence            4699999999999999999999985 6776 688888764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK15076 alpha-galactosidase; Provisional

Probab=94.62  E-value=0.2  Score=52.00  Aligned_cols=125  Identities=14%  Similarity=0.135  Sum_probs=71.3

Q ss_pred             CeEEEEecChhHHHHHH--HHH--hcC-CcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~--~la--~~f-G~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      ++|+|||.|.+|...+-  .++  .++ +.+|+.||.......  ..+...   .....+ ....+....++.+.++.||
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~---~~~~~~-~~~~i~~ttD~~eal~dAD   77 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARK---LAESLG-ASAKITATTDRREALQGAD   77 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHH---HHHhcC-CCeEEEEECCHHHHhCCCC
Confidence            47999999999955443  222  244 459999999875421  111111   111112 1223333467889999999


Q ss_pred             EEEEccCCC--h--------------------hhh-------hhcc-------HHHHhcCCCCcEEEEcCCCchhcHHHH
Q 015895          239 VISLHPVLD--K--------------------TTY-------HLIN-------KERLATMKKEAILVNCSRGPVIDEVAL  282 (398)
Q Consensus       239 iV~l~~Plt--~--------------------~T~-------~li~-------~~~~~~mk~gailIN~aRG~~vde~aL  282 (398)
                      +|+.++-..  .                    +|.       .+-+       .+.+....|++++||.+-.-=+-..++
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~  157 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM  157 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence            998776542  1                    110       0001       123444568999999988664555555


Q ss_pred             HHHHhcCCccEEE
Q 015895          283 VEHLKQNPMFRVG  295 (398)
Q Consensus       283 ~~aL~~g~i~gAa  295 (398)
                      . .+...++.|.+
T Consensus       158 ~-~~~~~rviG~c  169 (431)
T PRK15076        158 N-RYPGIKTVGLC  169 (431)
T ss_pred             h-cCCCCCEEEEC
Confidence            5 33344565553

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=94.60  E-value=0.13  Score=52.44  Aligned_cols=105  Identities=19%  Similarity=0.317  Sum_probs=67.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh-------HHHHHHh---hhhhhhhhcCCCCccccccCCH
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------RLEKFVT---AYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      .++.|+||.|=|+|++|+..|+.+ ...|++|++.|.+...       ..+.+.+   .........+     .+.. +-
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~g-----a~~i-~~  275 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAG-----AEYI-TN  275 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcC-----ceEc-cc
Confidence            459999999999999999999997 5789999998766541       0000000   0000000011     1112 22


Q ss_pred             HHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (398)
Q Consensus       231 ~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd  278 (398)
                      ++++ ..||+.+=|     .+.+.|+.+...++|.. +++-.+-|++-.
T Consensus       276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~  318 (411)
T COG0334         276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTP  318 (411)
T ss_pred             cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCH
Confidence            4554 478988644     45788988888888877 788888887653

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.58  E-value=0.13  Score=46.53  Aligned_cols=92  Identities=20%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh---HHHHH----------HhhhhhhhhhcCCCCcccc------c
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT---RLEKF----------VTAYGQFLKANGEQPVTWK------R  226 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~~------~  226 (398)
                      +|+|||+|.+|..+|+.|+ ..|. ++..+|...-.   ..+++          .+.....+.+.... ..+.      .
T Consensus         1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~-v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPF-VKIEAINIKID   78 (174)
T ss_pred             CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCC-CEEEEEEeecC
Confidence            5899999999999999985 5676 58888877510   00000          00000111111100 0010      0


Q ss_pred             cCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       227 ~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      ..+++++++++|+|+.++- +.+++..++....+.
T Consensus        79 ~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~  112 (174)
T cd01487          79 ENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN  112 (174)
T ss_pred             hhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence            1235577888898888853 567777666655554

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12861 malic enzyme; Reviewed

Probab=94.56  E-value=0.75  Score=50.88  Aligned_cols=163  Identities=19%  Similarity=0.224  Sum_probs=107.5

Q ss_pred             CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 015895          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (398)
Q Consensus       109 gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f  188 (398)
                      .|+|.|+.   -..+|=.+++-+++.+|-                     .|+.+...+|.|.|.|.-|-.+|+.+ ...
T Consensus       157 ~ipvf~DD---~qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~  211 (764)
T PRK12861        157 KIPVFHDD---QHGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL  211 (764)
T ss_pred             CCCeeccc---cchHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence            79999984   345677788888888872                     34578899999999999999999988 577


Q ss_pred             Cc---EEEEEcCChh-----hH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895          189 KM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (398)
Q Consensus       189 G~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~  259 (398)
                      |.   +++.+|+..-     +. +..+...|.    +.       ....+|.|+++.+|+++-.-     +.++|.++.+
T Consensus       212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a----~~-------~~~~~L~eai~~advliG~S-----~~g~ft~e~v  275 (764)
T PRK12861        212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERFA----QE-------TDARTLAEVIGGADVFLGLS-----AGGVLKAEML  275 (764)
T ss_pred             CCChhhEEEEcCCCeeeCCCcccCCHHHHHHH----hh-------cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHH
Confidence            87   7898984420     00 111111111    00       11258999999999886432     2589999999


Q ss_pred             hcCCCCcEEEEcCCCchhcHHHHHHHHhc-CC-ccEEEeccCCCCCCCCCCCCCCCceEEcCCCCC
Q 015895          260 ATMKKEAILVNCSRGPVIDEVALVEHLKQ-NP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       260 ~~mk~gailIN~aRG~~vde~aL~~aL~~-g~-i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~  323 (398)
                      +.|.+..++.=.|....  |-.=.++.++ |+ |.+-+-   ...|      -+-.|+++-|-++-
T Consensus       276 ~~Ma~~PIIFaLsNPtp--E~~pe~a~~~~g~aivaTGr---s~~p------nQ~NN~l~FPgi~~  330 (764)
T PRK12861        276 KAMAARPLILALANPTP--EIFPELAHATRDDVVIATGR---SDYP------NQVNNVLCFPYIFR  330 (764)
T ss_pred             HHhccCCEEEECCCCCc--cCCHHHHHhcCCCEEEEeCC---cCCC------CccceeeecchhhH
Confidence            99999999999988764  2111122333 33 322211   1112      24568999998764

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=94.56  E-value=0.28  Score=49.28  Aligned_cols=74  Identities=12%  Similarity=0.175  Sum_probs=48.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.|++|+++|= .++..+.+..+ ..+|++|.+..|..   +.......+.+   ....|   ..+....+++|.+++|
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~eav~~a  223 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEEN---CEVSG---GSVLVTDDVDEAVKDA  223 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHH---HHhcC---CeEEEEcCHHHHhCCC
Confidence            589999999997 67888888876 58999999998753   11111111100   00111   1233457899999999


Q ss_pred             CEEEE
Q 015895          238 DVISL  242 (398)
Q Consensus       238 DiV~l  242 (398)
                      |+|..
T Consensus       224 Dvvy~  228 (338)
T PRK02255        224 DFVYT  228 (338)
T ss_pred             CEEEE
Confidence            99987

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.50  E-value=0.2  Score=51.69  Aligned_cols=71  Identities=14%  Similarity=0.081  Sum_probs=52.5

Q ss_pred             ccccCCCeEEEEec----------ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 015895          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (398)
Q Consensus       160 g~~l~gktvGIIGl----------G~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (398)
                      +.++.|++|+|+|+          ..-...+++.| ...| ++|.+|||........           ..   . .....
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~-----------~~---~-~~~~~  378 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK-----------LD---G-LVTLV  378 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh-----------cc---C-ceeeC
Confidence            45689999999998          45778899998 6775 9999999985431110           00   0 01235


Q ss_pred             CHHHHhhcCCEEEEccCC
Q 015895          229 SMDEVLREADVISLHPVL  246 (398)
Q Consensus       229 sl~ell~~aDiV~l~~Pl  246 (398)
                      +++|.++.||.|+++++-
T Consensus       379 ~~~~~~~~ad~vvi~t~~  396 (415)
T PRK11064        379 SLDEALATADVLVMLVDH  396 (415)
T ss_pred             CHHHHHhCCCEEEECCCC
Confidence            789999999999999985

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.49  E-value=0.17  Score=54.89  Aligned_cols=96  Identities=21%  Similarity=0.232  Sum_probs=60.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el----l~~aDiV  240 (398)
                      ..++-|+|+|++|+.+|+.| +..|.++++.|.++... +.        +++.+ .+.-+....+.+-+    ++++|.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~--------~~~~g-~~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHI-ET--------LRKFG-MKVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHH-HH--------HHhcC-CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence            46799999999999999998 68899999999887642 21        11222 12222222333322    5689999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +++++.++.+..++  ...+.+.|...++--+|
T Consensus       469 vv~~~d~~~n~~i~--~~ar~~~p~~~iiaRa~  499 (621)
T PRK03562        469 INAIDDPQTSLQLV--ELVKEHFPHLQIIARAR  499 (621)
T ss_pred             EEEeCCHHHHHHHH--HHHHHhCCCCeEEEEEC
Confidence            99998655444432  34444555655554333

>PRK06153 hypothetical protein; Provisional

Probab=94.48  E-value=0.2  Score=51.05  Aligned_cols=107  Identities=17%  Similarity=0.153  Sum_probs=63.0

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh--------------HH-H--HHHhhhhhhhhhcCCCCcc
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------RL-E--KFVTAYGQFLKANGEQPVT  223 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~--------------~~-~--~~~~~~~~~~~~~~~~~~~  223 (398)
                      .|++++|+|||+|.+|+.++..|+ ..|. ++..+|...-.              .+ .  ...+.+...+..... ...
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-~I~  250 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-GIV  250 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-eEE
Confidence            689999999999999999999986 5564 88888865211              00 0  011111111111110 000


Q ss_pred             c--ccc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          224 W--KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       224 ~--~~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      .  ...  ..+ +.+..||+|+.|+.. .+++.++++.....   +.-+|+++-|-
T Consensus       251 ~~~~~I~~~n~-~~L~~~DiV~dcvDn-~~aR~~ln~~a~~~---gIP~Id~G~~l  301 (393)
T PRK06153        251 PHPEYIDEDNV-DELDGFTFVFVCVDK-GSSRKLIVDYLEAL---GIPFIDVGMGL  301 (393)
T ss_pred             EEeecCCHHHH-HHhcCCCEEEEcCCC-HHHHHHHHHHHHHc---CCCEEEeeecc
Confidence            0  011  112 346788988888874 56677777665553   55677776653

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.48  E-value=0.12  Score=54.01  Aligned_cols=117  Identities=17%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .++.++++.|+|+|.+|+++|+.| ...|++|.++|+..... ..+.       +..|.   .+.......+.+..+|+|
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l-------~~~gi---~~~~~~~~~~~~~~~d~v   78 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLI-------EVTGV---ADISTAEASDQLDSFSLV   78 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHH-------HhcCc---EEEeCCCchhHhcCCCEE
Confidence            357889999999999999999997 68999999999765432 1111       11121   111111223445788998


Q ss_pred             EEcc--CC-Chhhh-------hhccHHHHh-c------C--CCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          241 SLHP--VL-DKTTY-------HLINKERLA-T------M--KKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       241 ~l~~--Pl-t~~T~-------~li~~~~~~-~------m--k~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      +...  |. +++..       .++.+-.+. .      +  +...+-|-=+-|..--..-|...|+..
T Consensus        79 V~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         79 VTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             EeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            7763  32 22211       122322232 1      1  223455666678877777677777753

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.47  E-value=0.25  Score=48.94  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=56.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCC
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EAD  238 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~---~aD  238 (398)
                      ..|++|.|+|.|.+|...++.+ +..|+ +|++.+++.... +.        .++.|....-.....++.++..   ..|
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~-~~--------a~~lGa~~vi~~~~~~~~~~~~~~g~~D  237 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSL-SL--------AREMGADKLVNPQNDDLDHYKAEKGYFD  237 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHH-HH--------HHHcCCcEEecCCcccHHHHhccCCCCC
Confidence            3588999999999999999975 89998 688888776432 11        1122321111001112333332   257


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|+-++.. +.+   + ...+..+++|..++.++.
T Consensus       238 ~vid~~G~-~~~---~-~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        238 VSFEVSGH-PSS---I-NTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             EEEECCCC-HHH---H-HHHHHHhhcCCEEEEEcc
Confidence            77766642 111   1 345666777777777754

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.43  E-value=0.13  Score=53.49  Aligned_cols=116  Identities=20%  Similarity=0.268  Sum_probs=71.0

Q ss_pred             ccCCCeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~-vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..+++++.|+|+|..|.+ +|+.| +..|++|.++|....+..+.        +...+.   ......+ .+.+..+|+|
T Consensus         4 ~~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~gi---~~~~~~~-~~~~~~~d~v   70 (461)
T PRK00421          4 LRRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELGA---IIFIGHD-AENIKDADVV   70 (461)
T ss_pred             cCCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCCC-HHHCCCCCEE
Confidence            356789999999999999 79987 79999999999876432222        112221   1111112 3445689999


Q ss_pred             EEcc--CCC-hhhh-------hhccHH-HHhc-CC-CCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          241 SLHP--VLD-KTTY-------HLINKE-RLAT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       241 ~l~~--Plt-~~T~-------~li~~~-~~~~-mk-~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      ++..  |.+ +..+       .++++- .+.. ++ ...+-|--+.|..--..=+...|+...
T Consensus        71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            7764  322 2211       234433 3333 33 245666667788877776777776543

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.39  E-value=0.15  Score=50.83  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             eEEEEecChhHHHHHHHHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhh-------hhcC------CCCccccccCC
Q 015895          167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFL-------KANG------EQPVTWKRASS  229 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~f----G~~V~~~d~~~~~~~~~~~~~~~~~~-------~~~~------~~~~~~~~~~s  229 (398)
                      +|||+|+|+||+.+.|.+ ...    +.+|...+.....+...|.-.|++.-       +..+      .....+....+
T Consensus         1 ~IaInGfGrIGR~vlr~l-~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRAL-YESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHH-HhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            489999999999999986 443    36776665433333223333333210       1000      01111111224


Q ss_pred             HHHH-h--hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          230 MDEV-L--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       230 l~el-l--~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ++++ +  ...|+|+.|.+..- ++    +.....++.|+..|.++-
T Consensus        80 p~~~~w~~~gvDiVie~tG~~~-s~----e~a~~~l~aGa~~V~~Sa  121 (325)
T TIGR01532        80 PEALPWRALGVDLVLDCTGVYG-NR----EQGERHIRAGAKRVLFSH  121 (325)
T ss_pred             hhhccccccCCCEEEEccchhc-cH----HHHHHHHHcCCeEEEecC
Confidence            4443 2  47899998887421 11    223344566777777663

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK05086 malate dehydrogenase; Provisional

Probab=94.37  E-value=0.21  Score=49.59  Aligned_cols=102  Identities=25%  Similarity=0.251  Sum_probs=58.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhhcCCEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~--~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~sl~ell~~aDiV  240 (398)
                      ++|+|||. |.||+.+|..++.  .++..+..+|+........ .+     +.+.. .......  ..++.+.+++||+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~a-lD-----l~~~~-~~~~i~~~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVA-VD-----LSHIP-TAVKIKGFSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCccee-hh-----hhcCC-CCceEEEeCCCCHHHHcCCCCEE
Confidence            58999999 9999999977633  4566889999764321000 01     01101 0011111  24666778999999


Q ss_pred             EEccCCChh---hh-hhc------cHH---HHhcCCCCcEEEEcCCC
Q 015895          241 SLHPVLDKT---TY-HLI------NKE---RLATMKKEAILVNCSRG  274 (398)
Q Consensus       241 ~l~~Plt~~---T~-~li------~~~---~~~~mk~gailIN~aRG  274 (398)
                      +++.-....   ++ .++      -++   .+....+.+++++++-.
T Consensus        74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            988754221   11 122      122   33334678899998764

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.29  E-value=0.14  Score=53.91  Aligned_cols=119  Identities=18%  Similarity=0.160  Sum_probs=68.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh-HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++.+++|.|+|+|..|.++|+.| +..|.+|.++|..... ....        +...+. ...+.......+.+..+|+|
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~--------L~~~~~-~~~~~~g~~~~~~~~~~d~v   73 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAA--------LRAELP-DAEFVGGPFDPALLDGVDLV   73 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHH--------HHhhcC-CcEEEeCCCchhHhcCCCEE
Confidence            36688999999999999999997 7999999999976532 1111        111110 01111111123456789999


Q ss_pred             EEc--cCCC-----hhh-------hhhccH-HHHh-cC--------CCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          241 SLH--PVLD-----KTT-------YHLINK-ERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       241 ~l~--~Plt-----~~T-------~~li~~-~~~~-~m--------k~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      +..  +|.+     |.-       ..++.+ +.+. .+        ++..+-|-=+-|..--..-|...|+...
T Consensus        74 v~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g  147 (498)
T PRK02006         74 ALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG  147 (498)
T ss_pred             EECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            886  4433     211       112222 2221 12        2234556666788776666777776533

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.25  E-value=0.55  Score=43.75  Aligned_cols=98  Identities=20%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-H----hhcC
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-V----LREA  237 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e-l----l~~a  237 (398)
                      ..|.+|.|.|.|.+|+.+++.+ +..|.+|++.+++.... +. ..       ..+....-.....+..+ +    -...
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~-~~-~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL-EL-AK-------ELGADHVIDYKEEDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH-HH-HH-------HhCCceeccCCcCCHHHHHHHhcCCCC
Confidence            3578999999999999999985 88999999998875432 11 11       11111000000011111 1    2457


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      |+++.+++...     .-...+..|+++..+++++...
T Consensus       203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence            88887776311     1244567778888888876643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.20  E-value=0.34  Score=47.72  Aligned_cols=99  Identities=19%  Similarity=0.259  Sum_probs=57.2

Q ss_pred             EEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhcCCEEEEc
Q 015895          168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      |+|||.|.+|..+|-.++ ..|  .++..+|+........-.+     +.+....  ........+ .+.++.||+|+++
T Consensus         1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-----L~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit   73 (300)
T cd00300           1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-----LSHASAFLATGTIVRGGD-YADAADADIVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-----HHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence            589999999999998874 455  5899999976542211111     1111110  011111234 3568999999998


Q ss_pred             cCCCh---hhh--------hhcc--HHHHhcCCCCcEEEEcCC
Q 015895          244 PVLDK---TTY--------HLIN--KERLATMKKEAILVNCSR  273 (398)
Q Consensus       244 ~Plt~---~T~--------~li~--~~~~~~mk~gailIN~aR  273 (398)
                      .....   ++|        .++.  ...+....|.+++|+.+-
T Consensus        74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            76421   122        1111  123444458899999883

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.14  E-value=0.19  Score=47.95  Aligned_cols=99  Identities=17%  Similarity=0.282  Sum_probs=58.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Ccc-
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVT-  223 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~-  223 (398)
                      ..|++++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-..  + +++           .+.....+++.... ... 
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~   98 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP   98 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            4589999999999999999999985 5564 677887654221  0 000           00000111111100 000 


Q ss_pred             c-ccc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          224 W-KRA--SSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       224 ~-~~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      . ...  ..++++++++|+|+.++- +.+++..+++...+.
T Consensus        99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~  138 (240)
T TIGR02355        99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA  138 (240)
T ss_pred             EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence            0 011  235677888999888884 567888887665554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.10  E-value=0.23  Score=50.50  Aligned_cols=99  Identities=20%  Similarity=0.167  Sum_probs=60.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HH-----------HHhhhhhhhhhcCC-CCcc-
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EK-----------FVTAYGQFLKANGE-QPVT-  223 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~-----------~~~~~~~~~~~~~~-~~~~-  223 (398)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|+..-..  + ++           ..+....++.+... .... 
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~  115 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA  115 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence            4699999999999999999999984 6775 888888762110  0 00           00011111111111 0000 


Q ss_pred             c-c--ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          224 W-K--RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       224 ~-~--~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      . .  ...+.+++++++|+|+.|+- +.+++.++++.....
T Consensus       116 ~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~  155 (370)
T PRK05600        116 LRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT  155 (370)
T ss_pred             eeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence            0 0  11245678899999987775 578888888755443

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.08  E-value=0.31  Score=47.78  Aligned_cols=91  Identities=13%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      .++||||.|+||+..+..+.+.-++++. ++|+++......+.       ++.|.   . ....+.+++++  +.|+|++
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A-------~~~Gi---~-~~~~~~e~ll~~~dIDaV~i   70 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA-------RELGV---K-TSAEGVDGLLANPDIDIVFD   70 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH-------HHCCC---C-EEECCHHHHhcCCCCCEEEE
Confidence            3799999999999987665333356655 46766543211111       11221   1 12346788875  5788999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      ++|....-     +-....++.|..+|+-+
T Consensus        71 aTp~~~H~-----e~a~~al~aGk~VIdek   95 (285)
T TIGR03215        71 ATSAKAHA-----RHARLLAELGKIVIDLT   95 (285)
T ss_pred             CCCcHHHH-----HHHHHHHHcCCEEEECC
Confidence            99953221     12233345566665543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.06  E-value=0.3  Score=47.84  Aligned_cols=103  Identities=16%  Similarity=0.170  Sum_probs=60.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ....|+++.|+|.|-.+++++..| ...|. +|.+++|+.+. .+++.+.+    .+.+. ........+++.. .++|+
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~----~~~~~-~~~~~~~~~~~~~-~~~dl  193 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLF----GELGA-AVEAAALADLEGL-EEADL  193 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHh----hhccc-ccccccccccccc-cccCE
Confidence            357899999999999999999998 57884 89999998865 22222222    11110 0001111122221 26999


Q ss_pred             EEEccCCChhhh---hhccHHHHhcCCCCcEEEEcCCC
Q 015895          240 ISLHPVLDKTTY---HLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       240 V~l~~Plt~~T~---~li~~~~~~~mk~gailIN~aRG  274 (398)
                      |+.++|..-.-.   .+++   ...++++.++.|+--.
T Consensus       194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~  228 (283)
T COG0169         194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYN  228 (283)
T ss_pred             EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccC
Confidence            999999643221   0222   4445566666665443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.01  E-value=0.75  Score=48.03  Aligned_cols=120  Identities=17%  Similarity=0.131  Sum_probs=69.2

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      +..+.++++.|||.|.+|.++|+.| ...|.+|.++|...........+    .++..|..   +..-.... ....+|+
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~----~l~~~gv~---~~~~~~~~-~~~~~D~   81 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALAA----ILEALGAT---VRLGPGPT-LPEDTDL   81 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHH----HHHHcCCE---EEECCCcc-ccCCCCE
Confidence            3467899999999999999999987 68999999999765322111101    12222311   11111111 3456899


Q ss_pred             EEEccCCChhhhh----------hccH-HHH-hcCCC----CcEEEEcCCCchhcHHHHHHHHhc
Q 015895          240 ISLHPVLDKTTYH----------LINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       240 V~l~~Plt~~T~~----------li~~-~~~-~~mk~----gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |+++.-..+.+.-          ++++ +.+ ..+.+    ..+-|--+.|..--..=|...|+.
T Consensus        82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            9887633332221          2222 222 33422    245666677887766666777764

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.00  E-value=0.29  Score=45.66  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      +.||++.|.|. |.||+.+++.| ...|++|++.+++..
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~   41 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKA   41 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCch
Confidence            67899999996 99999999998 578999998887653

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=93.93  E-value=6.1  Score=39.68  Aligned_cols=106  Identities=12%  Similarity=0.112  Sum_probs=63.0

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+.|++|+++|=+  ++.++.+..+ ..||++|.+..|..-.-.+.+.+.........|   ..+....++++.++++|+
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv  228 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF  228 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4789999999976  7889988876 589999998877531100111110000011112   113334689999999999


Q ss_pred             EEEcc----CCChh---h------hhhccHHHHhcC-CCCcEEEEc
Q 015895          240 ISLHP----VLDKT---T------YHLINKERLATM-KKEAILVNC  271 (398)
Q Consensus       240 V~l~~----Plt~~---T------~~li~~~~~~~m-k~gailIN~  271 (398)
                      |..-.    ....+   .      .--++++.++.+ |+++++.-|
T Consensus       229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc  274 (334)
T PRK12562        229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC  274 (334)
T ss_pred             EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence            97542    11000   1      112466777764 677777776

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=93.92  E-value=0.11  Score=55.95  Aligned_cols=75  Identities=13%  Similarity=0.250  Sum_probs=49.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ....|+|||||-|..|+.+++.+ +.+|++|+++|+.+..-...+.+.       .-  ...+.....+.++++++|+|+
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~apa~~~AD~-------~~--v~~~~D~~~l~~~a~~~dvIt   88 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLEDCPASSVAAR-------HV--VGSFDDRAAVREFAKRCDVLT   88 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhCce-------ee--eCCCCCHHHHHHHHHHCCEEE
Confidence            47889999999999999999985 789999999998764211111100       00  000111122566678899997


Q ss_pred             EccCC
Q 015895          242 LHPVL  246 (398)
Q Consensus       242 l~~Pl  246 (398)
                      .....
T Consensus        89 ~e~e~   93 (577)
T PLN02948         89 VEIEH   93 (577)
T ss_pred             EecCC
Confidence            66443

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.91  E-value=0.15  Score=53.27  Aligned_cols=116  Identities=19%  Similarity=0.186  Sum_probs=68.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      +.||+++|+|+|.-|.++|+.| ...|++|+++|...........     .++..+.   ......+ .+.+.++|+|+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~-----~l~~~~~---~~~~~~~-~~~~~~~d~vV~   75 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVG-----ALADAAL---LVETEAS-AQRLAAFDVVVK   75 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHH-----HHhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence            5688999999999999999998 7999999999965432211100     0111110   0111112 355678999977


Q ss_pred             cc--CCC-hhhh-------hhccHHH--Hhc-CC-----CCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          243 HP--VLD-KTTY-------HLINKER--LAT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       243 ~~--Plt-~~T~-------~li~~~~--~~~-mk-----~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      ..  |.+ +.-+       .++++-.  +.. ++     ...+-|--+.|..--..-+...|+.
T Consensus        76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            64  332 2111       1344333  333 32     2456676677887777767777764

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=93.83  E-value=0.18  Score=50.69  Aligned_cols=97  Identities=20%  Similarity=0.301  Sum_probs=53.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcC-CcEEEE-EcCChhh-HHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhcCCEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI  240 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~f-G~~V~~-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e-ll~~aDiV  240 (398)
                      ++|+|+|. |.+|+.+++.+. .. ++++.+ .++.... ....   .+ ..+.  +.....   ..++++ ...++|+|
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~~l~~---~~-~~~~--~~~~~~---~~~~~~~~~~~vD~V   72 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGKPLSD---VH-PHLR--GLVDLV---LEPLDPEILAGADVV   72 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCcchHH---hC-cccc--cccCce---eecCCHHHhcCCCEE
Confidence            58999997 999999999984 55 677655 4532211 1111   00 0000  000001   122222 45789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v  277 (398)
                      ++|+|.. ....+.    ....+.|..+||.|-.==.
T Consensus        73 f~alP~~-~~~~~v----~~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         73 FLALPHG-VSMDLA----PQLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             EECCCcH-HHHHHH----HHHHhCCCEEEECCcccCC
Confidence            9999953 222222    1223579999999854333

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=93.78  E-value=0.41  Score=47.27  Aligned_cols=102  Identities=25%  Similarity=0.351  Sum_probs=63.9

Q ss_pred             ccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+.|++|.++|-|   ++.++.+..+ ..||++|.+..|..-...+.+.+.    .+..|   ..+....++++.++.||
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~~a~~~aD  218 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAKG---IKVRETESLEEVIDEAD  218 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHcC---CEEEEECCHHHHhCCCC
Confidence            4889999999995   9999999987 689999999887542111111110    11112   12334578999999999


Q ss_pred             EEEEccCC-----Chhh------hhhccHHHHhcCCCCcEEEEc
Q 015895          239 VISLHPVL-----DKTT------YHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       239 iV~l~~Pl-----t~~T------~~li~~~~~~~mk~gailIN~  271 (398)
                      +|..---.     ..+.      .--++++.++.+|+++++.-|
T Consensus       219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc  262 (301)
T TIGR00670       219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP  262 (301)
T ss_pred             EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence            99753110     0001      112456667777777777654

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=93.71  E-value=2.2  Score=42.36  Aligned_cols=65  Identities=14%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             cCCCeEEEEec---ChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       163 l~gktvGIIGl---G~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      +.|.+|+++|=   +++..+.+..+ ..||+ +|.+..|..-.  ..            ......+....++++.++.+|
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD  219 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD  219 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence            78999999998   59999999987 68999 99988774310  00            000012334578999999999


Q ss_pred             EEEE
Q 015895          239 VISL  242 (398)
Q Consensus       239 iV~l  242 (398)
                      +|..
T Consensus       220 vvy~  223 (310)
T PRK13814        220 VIVT  223 (310)
T ss_pred             EEEE
Confidence            9975

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.68  E-value=0.43  Score=49.40  Aligned_cols=96  Identities=13%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             ccccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       160 g~~l~gktvGIIGl----------G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      +..+.|++|+|+|+          ..-+..+++.| ...|.+|.+|||........         +..+        ...
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~---------~~~~--------~~~  370 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR---------REYG--------IIP  370 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH---------HhcC--------ccc
Confidence            45689999999999          46788999998 68999999999984321110         0000        011


Q ss_pred             HHH-HhhcCCEEEEccCCChhhhhhccHHHHh-cCCCCcEEEEcCCCch
Q 015895          230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV  276 (398)
Q Consensus       230 l~e-ll~~aDiV~l~~Plt~~T~~li~~~~~~-~mk~gailIN~aRG~~  276 (398)
                      +++ .++.||.|++++.- ++-+. ++-+.+. .||...++||+ |+-+
T Consensus       371 ~~~~~~~~ad~vvi~t~h-~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        371 VSEVKSSHYDAIIVAVGH-QQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             chhhhhcCCCEEEEccCC-HHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence            222 36789999999974 33332 4544444 45545688884 5443

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=93.67  E-value=0.21  Score=53.19  Aligned_cols=40  Identities=25%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .++.+|++.|+|.|.+|++++..| ...|++|++++|+...
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~  414 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER  414 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            457899999999999999999998 5789999999987643

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=93.63  E-value=0.12  Score=48.11  Aligned_cols=87  Identities=18%  Similarity=0.222  Sum_probs=54.5

Q ss_pred             EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEEEcc
Q 015895          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       168 vGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      |.|+|. |.+|+.+++.|. .-+.+|.+.-|..+......       ++..|..-+  .+....++.+.++.+|.|++++
T Consensus         1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence            678996 999999999984 58899999888775432211       122222111  1112345778899999999999


Q ss_pred             CCCh-----hhhhhccHHHHhcC
Q 015895          245 VLDK-----TTYHLINKERLATM  262 (398)
Q Consensus       245 Plt~-----~T~~li~~~~~~~m  262 (398)
                      |...     ....++++..-+..
T Consensus        73 ~~~~~~~~~~~~~li~Aa~~agV   95 (233)
T PF05368_consen   73 PPSHPSELEQQKNLIDAAKAAGV   95 (233)
T ss_dssp             SCSCCCHHHHHHHHHHHHHHHT-
T ss_pred             CcchhhhhhhhhhHHHhhhcccc
Confidence            9541     23455555444433

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.49  E-value=0.29  Score=49.44  Aligned_cols=98  Identities=26%  Similarity=0.208  Sum_probs=57.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCCCcccc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQPVTWK  225 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~~~~~~  225 (398)
                      ..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|...-..  + +++           .+.....+++.... ..+.
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~-v~v~  101 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD-VKVT  101 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC-cEEE
Confidence            4699999999999999999999985 6665 788888764110  0 000           00001111111110 0111


Q ss_pred             ----c--cCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          226 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       226 ----~--~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                          .  ..+..++++.+|+|+.++- +.+++.+++....+.
T Consensus       102 ~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~  142 (355)
T PRK05597        102 VSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARL  142 (355)
T ss_pred             EEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence                1  1224567888998888875 467777777654443

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=93.47  E-value=6.3  Score=39.13  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh-H-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT-R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+.|++|++||- +++..+.+..+ ..||++|.+..|..-. . .+...+.    ....+    .+....++++.+++||
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~----~~~~g----~i~~~~d~~~av~~aD  220 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAKENIHAQTVER----AKKKG----TLSWEMNLHKAVSHAD  220 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHHH----HHhcC----CeEEEeCHHHHhCCCC
Confidence            478999999998 78999998886 5899999999885421 1 1110000    01111    1222468999999999


Q ss_pred             EEEE
Q 015895          239 VISL  242 (398)
Q Consensus       239 iV~l  242 (398)
                      +|..
T Consensus       221 vvy~  224 (311)
T PRK14804        221 YVYT  224 (311)
T ss_pred             EEEe
Confidence            9976

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=93.46  E-value=0.28  Score=48.28  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=45.8

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCC--c-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGFK--M-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~fG--~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDi  239 (398)
                      .++||||+|.|++. .+..+ +..+  + -|.++|+++.. .+.+.+.|       +..    ..+.+++++++.  .|+
T Consensus         4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~iD~   70 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEF-------GIA----KAYTDLEELLADPDIDA   70 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            47999999977754 66665 4554  3 45667888754 22222222       211    235789999986  589


Q ss_pred             EEEccCCCh
Q 015895          240 ISLHPVLDK  248 (398)
Q Consensus       240 V~l~~Plt~  248 (398)
                      |++++|..-
T Consensus        71 V~Iatp~~~   79 (342)
T COG0673          71 VYIATPNAL   79 (342)
T ss_pred             EEEcCCChh
Confidence            999999643

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=93.46  E-value=0.097  Score=52.40  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=30.0

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ||||||-|..|+.+++.+ +.+|.+|+++|+++.
T Consensus         1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~   33 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDAN   33 (352)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCC
Confidence            599999999999999985 789999999998764

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.46  E-value=0.48  Score=43.96  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=30.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      .+.+|++.|.|. |.||+.+|+.+ ...|++|+...++.
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~   39 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGS   39 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCC
Confidence            367899999995 99999999998 57899988776544

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.45  E-value=0.25  Score=48.94  Aligned_cols=100  Identities=21%  Similarity=0.322  Sum_probs=56.0

Q ss_pred             eEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC----CccccccCCHHHHhhcCCEEE
Q 015895          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sl~ell~~aDiV~  241 (398)
                      +|+|||.|.||+.+|-.++. ++.-++..+|.........-.+     +.+....    ..... ..+ .+.+++||+|+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i~-~~~-y~~~~~aDivv   73 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKIR-AGD-YDDCADADIIV   73 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEEE-ECC-HHHhCCCCEEE
Confidence            58999999999999987642 4444899999875432211111     1111110    11111 234 45679999999


Q ss_pred             EccCC--Ch-hh---hhhc--cHH-------HHhcCCCCcEEEEcCC
Q 015895          242 LHPVL--DK-TT---YHLI--NKE-------RLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Pl--t~-~T---~~li--~~~-------~~~~mk~gailIN~aR  273 (398)
                      ++.-.  .+ +|   ..++  |.+       .+..-.+++++|.++-
T Consensus        74 itaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN  120 (307)
T cd05290          74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN  120 (307)
T ss_pred             ECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            87543  22 34   2333  211       2333457788887654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.45  E-value=0.36  Score=46.20  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.8

Q ss_pred             cCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       163 l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      +.||++.|.|.+   .||+++|+.++ ..|++|+..++.
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence            789999999997   59999999985 689999988775

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=93.38  E-value=0.59  Score=46.60  Aligned_cols=177  Identities=16%  Similarity=0.108  Sum_probs=97.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHh------cCCcEE--EEEcCChhhHHHHHHhhhhhhh---h--hcCCCCccccccCC
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVE------GFKMNL--IYYDLYQATRLEKFVTAYGQFL---K--ANGEQPVTWKRASS  229 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~------~fG~~V--~~~d~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~s  229 (398)
                      -.-++|+|||.|+=|+.+|+.++.      .|..+|  ++|+-....+.+.+.+..+..-   +  +.-..|.......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            344789999999999999997642      233334  4443322221122222111100   0  00111222334568


Q ss_pred             HHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc---------HHHHHHHHhc--CCccEE--Ee
Q 015895          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---------EVALVEHLKQ--NPMFRV--GL  296 (398)
Q Consensus       230 l~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd---------e~aL~~aL~~--g~i~gA--al  296 (398)
                      +.+.+.+||+++..+|-+ -+.. |-++...+.|+++..|.+.-|=-..         .+-+-++|.-  +-+.||  |.
T Consensus        99 l~ea~~dADilvf~vPhQ-f~~~-ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~  176 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPHQ-FIPR-ICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIAS  176 (372)
T ss_pred             HHHHhccCCEEEEeCChh-hHHH-HHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHH
Confidence            999999999999999952 2333 4467888899999999998763221         1123344432  233342  33


Q ss_pred             ccCCCCCCC----------CC----CCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 015895          297 DVFEDEPYM----------KP----GLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG  346 (398)
Q Consensus       297 DV~~~EP~~----------~~----~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g  346 (398)
                      .|...++..          ..    .|++.|+..++.---..+.|-     .-+..||.+.-.|
T Consensus       177 EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi-----~GaLKNVvAiaaG  235 (372)
T KOG2711|consen  177 EVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEI-----CGALKNVVAIAAG  235 (372)
T ss_pred             HHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHH-----hhhHHhHHHHhhh
Confidence            455444421          11    367778777777544444431     2244666665544

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.35  E-value=0.27  Score=45.79  Aligned_cols=39  Identities=26%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ++.++++.|+|. |.||+++++.| ...|++|++.+++...
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            467899999996 89999999998 5779999999998754

>PLN02527 aspartate carbamoyltransferase

Probab=93.27  E-value=0.74  Score=45.58  Aligned_cols=102  Identities=19%  Similarity=0.345  Sum_probs=60.7

Q ss_pred             ccCCCeEEEEecC---hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      ++.|++|+++|-+   ++..+.+..+ ..| |++|.+..|..-.....+.+.    ++..|   ..+....++++.+++|
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~~a~~~a  219 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTSKG---VEWEESSDLMEVASKC  219 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHHcC---CEEEEEcCHHHHhCCC
Confidence            3889999999975   6889988876 456 999988877431100111110    11112   2233456899999999


Q ss_pred             CEEEEccCCChh-------h-----hhhccHHHHhcCCCCcEEEEc
Q 015895          238 DVISLHPVLDKT-------T-----YHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       238 DiV~l~~Plt~~-------T-----~~li~~~~~~~mk~gailIN~  271 (398)
                      |+|....-..+.       -     .-.++++.++.+|+++++.-|
T Consensus       220 Dvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc  265 (306)
T PLN02527        220 DVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP  265 (306)
T ss_pred             CEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence            999763311010       0     122455666666666666654

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=93.21  E-value=0.43  Score=46.67  Aligned_cols=80  Identities=23%  Similarity=0.255  Sum_probs=49.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++.||++.|+|.|-.|++++-.| ...|+ +|.++||+..+. +.+.+.+..   ..+..........++++.+..+|+|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~ka-~~La~~~~~---~~~~~~~~~~~~~~~~~~~~~~div  198 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHhh---ccCcceEEecCHhHHHHHHhhcCEE
Confidence            46689999999999999999987 46886 799999987542 222221100   0010000000011234456789999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      +.++|.
T Consensus       199 INaTp~  204 (283)
T PRK14027        199 VNATPM  204 (283)
T ss_pred             EEcCCC
Confidence            999984

>PRK08223 hypothetical protein; Validated

Probab=93.20  E-value=0.3  Score=47.90  Aligned_cols=37  Identities=16%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~  198 (398)
                      ..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|..
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D   60 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFD   60 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCC
Confidence            4589999999999999999999985 5664 67777765

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.20  E-value=0.45  Score=43.94  Aligned_cols=38  Identities=29%  Similarity=0.388  Sum_probs=31.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~  199 (398)
                      ..|++++|.|+|+|.+|.++|+.|+ ..|. ++..+|...
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d~   53 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHRL   53 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECCc
Confidence            4589999999999999999999985 5665 588888664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02214 cinnamoyl-CoA reductase

Probab=93.20  E-value=0.46  Score=47.29  Aligned_cols=83  Identities=12%  Similarity=-0.016  Sum_probs=48.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+++|++.|.|. |-||+.+++.| ...|.+|.+.++...............................+++++++.+|+|
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            467899999998 99999999998 5789999999876542111100000000000000000011223567788899998


Q ss_pred             EEccC
Q 015895          241 SLHPV  245 (398)
Q Consensus       241 ~l~~P  245 (398)
                      +-+..
T Consensus        86 ih~A~   90 (342)
T PLN02214         86 FHTAS   90 (342)
T ss_pred             EEecC
Confidence            76653

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=93.18  E-value=0.66  Score=46.22  Aligned_cols=116  Identities=17%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cCCc-----EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895          166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~fG~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~  235 (398)
                      ++|+|||. |.||+.+|-.++. ++--     ++..+|.....  ....-.+     +.+.. ..........+..+.++
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~~   77 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME-----LEDCAFPLLAEIVITDDPNVAFK   77 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh-----hhhccccccCceEEecCcHHHhC
Confidence            48999999 9999999987642 2222     79999984322  1110011     01100 00000111134457789


Q ss_pred             cCCEEEEccCC--Ch-hhh-hhc--cH-------HHHhcCC-CCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          236 EADVISLHPVL--DK-TTY-HLI--NK-------ERLATMK-KEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       236 ~aDiV~l~~Pl--t~-~T~-~li--~~-------~~~~~mk-~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +||+|+++.-.  .+ +|| .++  |.       ..+.... +.+++|.++  .++|.-.-+-.-.+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~k~s  142 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAMKNA  142 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHHHHc
Confidence            99999987543  22 232 122  11       1233334 588999986  56666664443333

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK04148 hypothetical protein; Provisional

Probab=93.13  E-value=0.36  Score=41.99  Aligned_cols=72  Identities=18%  Similarity=0.144  Sum_probs=46.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      +++++.+||+| -|..+|+.| ...|.+|++.|.++... +..        +..+...........--++.+.+|+|-..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~aV-~~a--------~~~~~~~v~dDlf~p~~~~y~~a~liysi   84 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKAV-EKA--------KKLGLNAFVDDLFNPNLEIYKNAKLIYSI   84 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HHhCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence            56789999999 999999998 58899999999988642 110        11111111111112234678889998666


Q ss_pred             cCC
Q 015895          244 PVL  246 (398)
Q Consensus       244 ~Pl  246 (398)
                      =|-
T Consensus        85 rpp   87 (134)
T PRK04148         85 RPP   87 (134)
T ss_pred             CCC
Confidence            553

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=93.04  E-value=0.13  Score=45.70  Aligned_cols=70  Identities=17%  Similarity=0.146  Sum_probs=47.8

Q ss_pred             EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEEEcc
Q 015895          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       168 vGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      |.|+|. |.+|+.+++.| ...|.+|++..|++++....           .+....  .+....++.+.++.+|.|+.++
T Consensus         1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~~-----------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAEDS-----------PGVEIIQGDLFDPDSVKAALKGADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHHC-----------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhcccc-----------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence            578995 99999999998 68889999999987653210           010000  0111234667788999999999


Q ss_pred             CCChh
Q 015895          245 VLDKT  249 (398)
Q Consensus       245 Plt~~  249 (398)
                      +.+..
T Consensus        69 ~~~~~   73 (183)
T PF13460_consen   69 GPPPK   73 (183)
T ss_dssp             HSTTT
T ss_pred             hhhcc
Confidence            75443

...

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=92.98  E-value=0.69  Score=45.76  Aligned_cols=123  Identities=19%  Similarity=0.325  Sum_probs=63.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCc--EEEEEcCChh-hHHH-HHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQA-TRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~--~V~~~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++|+|+|. |.+|..+|..++ ..|.  +|+.+|+... +.+. ...+.+.. +...+. ........+.+ .+++||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~-~~~~~~-~~~i~~~~d~~-~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDA-LAAAGI-DAEIKISSDLS-DVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhc-hhccCC-CcEEEECCCHH-HhCCCCEE
Confidence            57999998 999999999874 4443  6999998431 1111 10111000 000010 01111123444 48999999


Q ss_pred             EEccCCCh---hhh-hh-------cc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH----HhcCCccEE
Q 015895          241 SLHPVLDK---TTY-HL-------IN--KERLATMKKEAILVNCSRGPVIDEVALVEH----LKQNPMFRV  294 (398)
Q Consensus       241 ~l~~Plt~---~T~-~l-------i~--~~~~~~mk~gailIN~aRG~~vde~aL~~a----L~~g~i~gA  294 (398)
                      +++.....   +++ .+       +.  ...+....+.+++|..+  ..+|.-..+-.    +...++.|.
T Consensus        77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~  145 (309)
T cd05294          77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGL  145 (309)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeec
Confidence            99875321   121 11       11  12344445677777776  45554443222    334455554

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.96  E-value=0.35  Score=44.76  Aligned_cols=39  Identities=23%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ++.|+++.|.|. |.||+.+++.+ ...|++|++.+++...
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l-~~~G~~V~~~~r~~~~   41 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFA-LKEGAQVCINSRNENK   41 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            378899999998 78999999998 5789999999997653

>PRK06701 short chain dehydrogenase; Provisional

Probab=92.89  E-value=0.37  Score=46.77  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ..+.||++.|.|. |.||..+|++++ ..|++|+.+++...
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~   81 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH   81 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            4688999999995 889999999984 68999999987653

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=92.89  E-value=0.53  Score=45.36  Aligned_cols=122  Identities=23%  Similarity=0.224  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC----Cc-------
Q 015895          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------  190 (398)
Q Consensus       122 ~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f----G~-------  190 (398)
                      .+|=-+++-+|+.+|-                     .|+.|++.++.|+|.|.-|-.+|+.+. ..    |.       
T Consensus         3 GTaaV~lAgll~Al~~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~   60 (255)
T PF03949_consen    3 GTAAVVLAGLLNALRV---------------------TGKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARK   60 (255)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------HTS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHT
T ss_pred             hhHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhc
Confidence            3566677888887773                     345799999999999999999999874 44    65       


Q ss_pred             EEEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEEEEccCCChhhhhhccHHHHhcCC
Q 015895          191 NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       191 ~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a--DiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      +++.+|+..-     +.+..+...|.    +... +  .....+|.|+++.+  |+++-+--    ..++|.++.++.|.
T Consensus        61 ~i~lvD~~Gll~~~r~~l~~~~~~~a----~~~~-~--~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma  129 (255)
T PF03949_consen   61 RIWLVDSKGLLTDDREDLNPHKKPFA----RKTN-P--EKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMA  129 (255)
T ss_dssp             TEEEEETTEEEBTTTSSHSHHHHHHH----BSSS-T--TT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCH
T ss_pred             cEEEEeccceEeccCccCChhhhhhh----ccCc-c--cccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHh
Confidence            5888886521     11111112221    1111 1  11124899999999  99986542    47889999999998


Q ss_pred             C---CcEEEEcCCCch
Q 015895          264 K---EAILVNCSRGPV  276 (398)
Q Consensus       264 ~---gailIN~aRG~~  276 (398)
                      +   ..++.=.|....
T Consensus       130 ~~~erPIIF~LSNPt~  145 (255)
T PF03949_consen  130 KHNERPIIFPLSNPTP  145 (255)
T ss_dssp             HHSSSEEEEE-SSSCG
T ss_pred             ccCCCCEEEECCCCCC
Confidence            8   899999998765

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=92.89  E-value=0.17  Score=52.00  Aligned_cols=37  Identities=22%  Similarity=0.430  Sum_probs=29.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATR  202 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~~~~  202 (398)
                      .+|||.|||+||+.++|.+...++++|++ +||....+
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~  123 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAK  123 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHH
Confidence            48999999999999999852247899888 67665443

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=92.73  E-value=0.58  Score=48.39  Aligned_cols=75  Identities=15%  Similarity=0.253  Sum_probs=49.8

Q ss_pred             ccCCCeEEEEecC---hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.|++|+++|-+   ++..+.+..+ ..+ ||+|.+..|..-.-.+.+.+.    +...|   ..+....+++|.+++|
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~eav~~A  309 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRNG---HVIEQTDDLAAGLRGA  309 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhcC---CeEEEEcCHHHHhCCC
Confidence            4899999999994   8999999876 455 999998877532111111111    11112   1233457899999999


Q ss_pred             CEEEEcc
Q 015895          238 DVISLHP  244 (398)
Q Consensus       238 DiV~l~~  244 (398)
                      |+|....
T Consensus       310 DVVYt~~  316 (429)
T PRK11891        310 DVVYATR  316 (429)
T ss_pred             CEEEEcC
Confidence            9998643

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.68  E-value=1.9  Score=44.62  Aligned_cols=116  Identities=14%  Similarity=0.165  Sum_probs=68.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      +.+|++.|+|.|.+|.++|+.| ...|++|.++|...... ..+        ++... ....+......++.+..+|+|+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~--------l~~~~-~gi~~~~g~~~~~~~~~~d~vv   72 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ--------IGKMF-DGLVFYTGRLKDALDNGFDILA   72 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH--------Hhhcc-CCcEEEeCCCCHHHHhCCCEEE
Confidence            6789999999999999999997 68999999999765432 111        11100 0111111111234557899997


Q ss_pred             EccCCChhhhh----------hcc-HHHHhc-CC---CCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          242 LHPVLDKTTYH----------LIN-KERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       242 l~~Plt~~T~~----------li~-~~~~~~-mk---~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      ...--.++..-          ++. .+.+.. ++   ...+-|-=+.|..--..=+...|+.
T Consensus        73 ~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~  134 (445)
T PRK04308         73 LSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK  134 (445)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            76433322211          222 233333 32   2456666677887766667777765

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=92.64  E-value=0.44  Score=47.33  Aligned_cols=103  Identities=21%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhcCCEEE
Q 015895          167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS  241 (398)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~sl~ell~~aDiV~  241 (398)
                      +|+|||. |.||..+|-.|+. .+.-++..+|.....  ..-.+     +.+ .........   ..++.+.++.||+|+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~--g~a~D-----L~~-~~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAAD-----LSH-IPTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc--EEEch-----hhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence            5899999 9999999987642 444589999986621  00011     111 111111111   113567889999999


Q ss_pred             EccCCC--h-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcH
Q 015895          242 LHPVLD--K-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       242 l~~Plt--~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde  279 (398)
                      ++....  + .+| .++  |       .+.+..-.|.+++|+++-  ++|.
T Consensus        73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv  121 (312)
T TIGR01772        73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS  121 (312)
T ss_pred             EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence            876532  2 122 122  1       123444578999999876  4554

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=92.55  E-value=0.28  Score=48.70  Aligned_cols=32  Identities=28%  Similarity=0.374  Sum_probs=26.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEEEEcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDL  197 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~~V~~~d~  197 (398)
                      .+|||=|||+||+.++|.+...- .|+|++.+-
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd   34 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND   34 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence            37999999999999999974334 499998876

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=92.53  E-value=0.37  Score=42.45  Aligned_cols=88  Identities=19%  Similarity=0.248  Sum_probs=52.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      .-.|++|++||+  + +.+++++ +..+.++.++|+.+.....               ...+. .....++++++||+|+
T Consensus         8 ~~~~~~V~~VG~--f-~P~~~~l-~~~~~~v~v~d~~~~~~~~---------------~~~~~-~~~~~~~~l~~aD~vi   67 (147)
T PF04016_consen    8 IGPGDKVGMVGY--F-QPLVEKL-KERGAEVRVFDLNPDNIGE---------------EPGDV-PDEDAEEILPWADVVI   67 (147)
T ss_dssp             TTTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--S---------------SCT-E-EGGGHHHHGGG-SEEE
T ss_pred             hcCCCEEEEEcC--c-HHHHHHH-hcCCCCEEEEECCCCCCCC---------------CCCcC-CHHHHHHHHccCCEEE
Confidence            357899999996  1 1267777 5788999999998854211               01111 2245788999999997


Q ss_pred             EccC-CChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LHPV-LDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~P-lt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +.-- +-..|   | .+.++.+++++.++=.+-
T Consensus        68 iTGsTlvN~T---i-~~iL~~~~~~~~vil~Gp   96 (147)
T PF04016_consen   68 ITGSTLVNGT---I-DDILELARNAREVILYGP   96 (147)
T ss_dssp             EECHHCCTTT---H-HHHHHHTTTSSEEEEESC
T ss_pred             EEeeeeecCC---H-HHHHHhCccCCeEEEEec
Confidence            6531 11111   1 456777776666665543

; PDB: 3L5O_B 3NPG_A.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=92.52  E-value=0.18  Score=44.71  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=27.8

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhH
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATR  202 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~  202 (398)
                      +|||-|||+||+.++|.+...-.++|++. |+.+..+
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~   38 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPE   38 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHH
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEecccccch
Confidence            79999999999999999755667887766 4543443

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK06128 oxidoreductase; Provisional

Probab=92.45  E-value=0.48  Score=46.08  Aligned_cols=36  Identities=25%  Similarity=0.226  Sum_probs=30.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      .++||++.|.|. |.||+.+|+.|+ ..|++|+...+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence            488999999997 999999999984 789999876554

>PRK06349 homoserine dehydrogenase; Provisional

Probab=92.44  E-value=0.96  Score=46.81  Aligned_cols=108  Identities=12%  Similarity=0.127  Sum_probs=60.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhc---------CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~---------fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~  235 (398)
                      .+|||+|+|.||+.+++.+.+.         .+.+|. ++|++.... +.             ..........++++++.
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~-------------~~~~~~~~~~d~~~ll~   69 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RG-------------VDLPGILLTTDPEELVN   69 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cC-------------CCCcccceeCCHHHHhh
Confidence            4799999999999998876321         245543 457654321 00             00011122457899985


Q ss_pred             --cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhcCCc
Q 015895          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (398)
Q Consensus       236 --~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v-de~aL~~aL~~g~i  291 (398)
                        +.|+|+.+++.....+.    -..+.++.|.-+|...-+.+. .-++|.++.++..+
T Consensus        70 d~~iDvVve~tg~~~~~~~----~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         70 DPDIDIVVELMGGIEPARE----LILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             CCCCCEEEECCCCchHHHH----HHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence              46999998875322222    223445666666543222222 23557777776554

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.34  E-value=0.77  Score=45.64  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=55.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHH--HhhcCC
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREAD  238 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e--ll~~aD  238 (398)
                      ..|.+|.|+|.|.||...++.+ +..|++|++.+++.  +.+.+ +.+       +.|...... ...++.+  .....|
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~-~~~-------~~Ga~~v~~-~~~~~~~~~~~~~~d  240 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKAD-IVE-------ELGATYVNS-SKTPVAEVKLVGEFD  240 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHH-HHH-------HcCCEEecC-CccchhhhhhcCCCC
Confidence            3678999999999999999875 88999999998742  12211 111       122211100 0011111  123467


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|+-++... .   .+ .+.++.++++..++.++.
T Consensus       241 ~vid~~g~~-~---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         241 LIIEATGVP-P---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             EEEECcCCH-H---HH-HHHHHHccCCcEEEEEec
Confidence            777776521 1   12 456677777777776653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=92.32  E-value=0.64  Score=46.07  Aligned_cols=77  Identities=17%  Similarity=0.142  Sum_probs=50.4

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      +|+|+|- |-.|.++.|+|+.--.+++........                       + ...+.+++++++|++++++|
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----------------------~-~~~~~~~~~~~~D~vFlalp   58 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----------------------K-DAAERAKLLNAADVAILCLP   58 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----------------------c-CcCCHhHhhcCCCEEEECCC
Confidence            6999997 999999999985333456655432211                       0 01245677789999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      .. .+..+. .. +  .+.|+.+||.|
T Consensus        59 ~~-~s~~~~-~~-~--~~~g~~VIDlS   80 (310)
T TIGR01851        59 DD-AAREAV-SL-V--DNPNTCIIDAS   80 (310)
T ss_pred             HH-HHHHHH-HH-H--HhCCCEEEECC
Confidence            53 333332 11 1  24688898887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=92.31  E-value=0.58  Score=53.49  Aligned_cols=107  Identities=10%  Similarity=0.148  Sum_probs=64.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH--h--------hhh---h---hhhhcC---CC-Cc
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--T--------AYG---Q---FLKANG---EQ-PV  222 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~--~--------~~~---~---~~~~~~---~~-~~  222 (398)
                      +.-.++.|+|.|++|+..++.+ .++|++ . .++..-+++....  .        .|+   .   ..++.+   .. ..
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            4457899999999999999986 789888 2 3332211111000  0        000   0   000000   00 00


Q ss_pred             cc----cccC-C-HHHHhhcCCEEEEccCCChhhhhhccHH-HHhcCCCCc----EEEEcC
Q 015895          223 TW----KRAS-S-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS  272 (398)
Q Consensus       223 ~~----~~~~-s-l~ell~~aDiV~l~~Plt~~T~~li~~~-~~~~mk~ga----ilIN~a  272 (398)
                      .+    +.+. . +++.+..+|+|+.++-..+.+..+|.++ ..+.||+|+    +++|++
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence            00    0011 1 4578899999999997777788999888 778899998    888875

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=92.27  E-value=0.16  Score=46.55  Aligned_cols=67  Identities=13%  Similarity=0.233  Sum_probs=45.0

Q ss_pred             eEEEEecChhHHHHHHH-HHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          167 TVGVIGAGRIGSAYARM-MVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~-la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      ++.|||.|++|++++.. ..+..||++ -+||..+... -.          ..  .+..+...+++++.++  +.|+.++
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V-G~----------~~--~~v~V~~~d~le~~v~~~dv~iaiL  152 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV-GT----------KI--GDVPVYDLDDLEKFVKKNDVEIAIL  152 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh-Cc----------cc--CCeeeechHHHHHHHHhcCccEEEE
Confidence            59999999999999953 223567875 5778776531 10          11  1233445567888887  6777899


Q ss_pred             ccCC
Q 015895          243 HPVL  246 (398)
Q Consensus       243 ~~Pl  246 (398)
                      |+|.
T Consensus       153 tVPa  156 (211)
T COG2344         153 TVPA  156 (211)
T ss_pred             EccH
Confidence            9995

>PRK07877 hypothetical protein; Provisional

Probab=92.22  E-value=0.79  Score=50.55  Aligned_cols=98  Identities=18%  Similarity=0.155  Sum_probs=59.2

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhH--H-HH----------HHhhhhhhhhhcCCC-Cccc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATR--L-EK----------FVTAYGQFLKANGEQ-PVTW  224 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~--~-~~----------~~~~~~~~~~~~~~~-~~~~  224 (398)
                      ..|++++|+|+|+| +|+.+|..|+ ..|  -++...|...-+.  + +.          ..+.....+.+.... .+..
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~  180 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV  180 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence            45999999999999 9999999985 455  2677777542110  0 00          000011111111100 0000


Q ss_pred             -c---ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          225 -K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       225 -~---~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                       .   ...+++++++.+|+|+-|+- +-+++.++++.....
T Consensus       181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence             0   11357888999999999997 478999998776665

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.08  E-value=0.8  Score=49.10  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=32.6

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      -.|+++.|.|. |.||+.++++| ...|++|++++|....
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ek  116 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQR  116 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHH
Confidence            46789999997 99999999998 5789999999887654

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=92.01  E-value=1.2  Score=46.52  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=70.6

Q ss_pred             cCCCeEEEEec----ChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          163 LKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       163 l~gktvGIIGl----G~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      ++=++|.|||.    |++|..+.+.+ +..|.  +|+..+|.....                   .+...+.+++|+-..
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~~   64 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPDP   64 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCCC
Confidence            45678999999    88999999998 56554  788888864321                   112234688998888


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcE-EEEcCCCc-----hhcHHHHHHHHhcCCccEE
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAI-LVNCSRGP-----VIDEVALVEHLKQNPMFRV  294 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gai-lIN~aRG~-----~vde~aL~~aL~~g~i~gA  294 (398)
                      .|++++++|. +.+...+.+ ..+ .+-.++ ++.-+-++     .-.+++|.+..+.+.+.-.
T Consensus        65 ~Dlavi~vp~-~~~~~~l~e-~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        65 VDLAVIVVPA-KYVPQVVEE-CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             CCEEEEecCH-HHHHHHHHH-HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence            8999999994 344555533 333 333444 43322222     2346778888887765543

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.97  E-value=2.1  Score=44.31  Aligned_cols=114  Identities=20%  Similarity=0.178  Sum_probs=66.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sl~ell~~aDiV~l~  243 (398)
                      +-++.|+|+|.+|.++|+.| ...|++|.++|..........       ++... ....... ..+ .+.+.++|+|+..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~s   75 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREF-PDVELRCGGFD-CELLVQASEIIIS   75 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhc-CCcEEEeCCCC-hHHhcCCCEEEEC
Confidence            34799999999999999997 689999999997653211110       11100 0111111 112 3446789998765


Q ss_pred             c--CCC-hhhh-------hhccH-HHH-hcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          244 P--VLD-KTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       244 ~--Plt-~~T~-------~li~~-~~~-~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      .  |.+ |+-.       .++.+ +.+ ..++...+-|--+.|..--..-+...|+.
T Consensus        76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            4  322 2211       12332 233 23444456666677887777767777775

>PRK10206 putative oxidoreductase; Provisional

Probab=91.95  E-value=0.46  Score=47.63  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=42.0

Q ss_pred             eEEEEecChhHHH-HHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 015895          167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (398)
Q Consensus       167 tvGIIGlG~IG~~-vA~~la~~-fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~  241 (398)
                      ++||||+|.|++. .+..+... -++++. ++|+.+...  .+.+.|       +.    ...+.+++++++  +.|+|+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~~----~~~~~~~~ell~~~~iD~V~   69 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------SH----IHFTSDLDEVLNDPDVKLVV   69 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------CC----CcccCCHHHHhcCCCCCEEE
Confidence            6999999998864 34433222 257775 588875332  211111       10    123468999995  579999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      +++|..
T Consensus        70 I~tp~~   75 (344)
T PRK10206         70 VCTHAD   75 (344)
T ss_pred             EeCCch
Confidence            999954

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.95  E-value=0.17  Score=43.47  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=28.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~  199 (398)
                      .++|.|+|+|.+|..+|+.|+ ..|+ ++..+|+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence            578999999999999999985 5566 788898764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PTZ00325 malate dehydrogenase; Provisional

Probab=91.89  E-value=0.39  Score=47.83  Aligned_cols=105  Identities=25%  Similarity=0.295  Sum_probs=58.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhc
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE  236 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~sl~ell~~  236 (398)
                      -++.++|+|||. |+||+.+|..++. ++.-++..+|...... + ..+     +.+... .......   .+..+.++.
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~-a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g   76 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-V-AAD-----LSHIDT-PAKVTGYADGELWEKALRG   76 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-c-ccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence            466779999999 9999999988731 4556899999832211 0 001     111111 1111111   222578899


Q ss_pred             CCEEEEccCC--Ch-hhh-hhcc------HH---HHhcCCCCcEEEEcCCC
Q 015895          237 ADVISLHPVL--DK-TTY-HLIN------KE---RLATMKKEAILVNCSRG  274 (398)
Q Consensus       237 aDiV~l~~Pl--t~-~T~-~li~------~~---~~~~mk~gailIN~aRG  274 (398)
                      ||+|++++-.  .+ +++ .++.      ++   .+....+.++++.++-+
T Consensus        77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP  127 (321)
T PTZ00325         77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP  127 (321)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            9999877643  21 122 2222      22   23334666778777654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=91.89  E-value=0.81  Score=45.27  Aligned_cols=150  Identities=13%  Similarity=0.129  Sum_probs=82.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-CccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|.|+|.|.||+-++-+| ...|..|...-|.+.  .+.+.+. +-.+...... .... ......+.+..+|+|++.+
T Consensus         1 mkI~IlGaGAvG~l~g~~L-~~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~-~~~~~~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGAGAIGSLLGARL-AKAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPV-VAATDAEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECCcHHHHHHHHHH-HhCCCeEEEEecHHH--HHHHHhC-CeEEecCCCcccccc-ccccChhhcCCCCEEEEEe
Confidence            5799999999999999998 467777777766553  1221110 1011111110 0001 1122335567899999998


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccC---CCCCCCCCCCCCCCceEEcCCC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF---EDEPYMKPGLSEMKNAIVVPHI  321 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~---~~EP~~~~~L~~~~nvilTPHi  321 (398)
                      -. -++...+ +......++.+.++-.-- ++=.++.+-+.+...++.+. +..+   ..+|.. -.......+.+.+.-
T Consensus        76 Ka-~q~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il~G-~~~~~a~~~~~g~-v~~~g~g~~~ig~~~  150 (307)
T COG1893          76 KA-YQLEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVLGG-VTTHGAVREGPGH-VVHTGLGDTVIGELR  150 (307)
T ss_pred             cc-ccHHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEEEE-EeeeeeEecCCce-EEEecCCcEEEccCC
Confidence            64 3444444 456666788877664433 34455566666666543331 2211   122321 123345677787776


Q ss_pred             CCCc
Q 015895          322 ASAS  325 (398)
Q Consensus       322 a~~T  325 (398)
                      +..+
T Consensus       151 ~~~~  154 (307)
T COG1893         151 GGRD  154 (307)
T ss_pred             CCch
Confidence            6554

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=91.85  E-value=0.94  Score=45.49  Aligned_cols=74  Identities=14%  Similarity=0.266  Sum_probs=48.4

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+.|++|+++|=   +++..+.+..++.-+|++|.+..|..-.....+.+.    ++..+   ..+....+++|.+++||
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~ea~~~aD  228 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENAG---HKITITDQLEGNLDKAD  228 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHcC---CeEEEEcCHHHHHccCC
Confidence            589999999998   588888887654355999998887531101111110    11112   22334578999999999


Q ss_pred             EEEE
Q 015895          239 VISL  242 (398)
Q Consensus       239 iV~l  242 (398)
                      +|..
T Consensus       229 vvyt  232 (338)
T PRK08192        229 ILYL  232 (338)
T ss_pred             EEEE
Confidence            9986

>PLN00106 malate dehydrogenase

Probab=91.83  E-value=0.35  Score=48.26  Aligned_cols=105  Identities=23%  Similarity=0.281  Sum_probs=60.8

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-Ccc-ccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVT-WKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~sl~ell~~aDi  239 (398)
                      ..++|+|+|. |+||+.+|..|+. .+.-++..+|..... .+ ..+     +.+.... ... +....++.+.++.||+
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~-a~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi   89 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GV-AAD-----VSHINTPAQVRGFLGDDQLGDALKGADL   89 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-ee-Ech-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence            3469999999 9999999998732 444589999986621 10 001     0111110 111 1122456788999999


Q ss_pred             EEEccCC--Ch-hhh-hhc--c----H---HHHhcCCCCcEEEEcCCCc
Q 015895          240 ISLHPVL--DK-TTY-HLI--N----K---ERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       240 V~l~~Pl--t~-~T~-~li--~----~---~~~~~mk~gailIN~aRG~  275 (398)
                      |+++.-.  .+ .++ .++  |    +   +.+....+.+++++++-.-
T Consensus        90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            9887543  21 222 122  1    1   2344456888999987643

>PRK06392 homoserine dehydrogenase; Provisional

Probab=91.80  E-value=0.77  Score=45.87  Aligned_cols=118  Identities=14%  Similarity=0.234  Sum_probs=62.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-------CCcEEEE-EcCChhhH------HHHHHhhhhhhhhhcCCC-CccccccCCH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG-------FKMNLIY-YDLYQATR------LEKFVTAYGQFLKANGEQ-PVTWKRASSM  230 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-------fG~~V~~-~d~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~sl  230 (398)
                      ++|+|+|+|+||+.+++.+.+.       ++.+|++ +|++..-.      .+...+    .... +.. .... ...++
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~----~~~~-g~l~~~~~-~~~~~   74 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIIS----YKEK-GRLEEIDY-EKIKF   74 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHH----HHhc-CccccCCC-CcCCH
Confidence            3799999999999999987432       5677654 45432110      011000    0000 100 0000 00145


Q ss_pred             HHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhcCC
Q 015895          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP  290 (398)
Q Consensus       231 ~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v-de~aL~~aL~~g~  290 (398)
                      ++++ ..+|+|+=|+|...+-..- -.-....++.|.-+|-..-|.+. .-+.|.+..+++.
T Consensus        75 ~~ll~~~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g  135 (326)
T PRK06392         75 DEIFEIKPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR  135 (326)
T ss_pred             HHHhcCCCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence            6654 4689999888753210101 12234456778888888777764 3455666665543

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.74  E-value=0.56  Score=48.36  Aligned_cols=115  Identities=19%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++.++++.|+|+|..|.+.++.| +..|.+|.++|..........       +. .+   ..........+.++..|+|+
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~g---~~~~~~~~~~~~~~~~d~vv   70 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-EN---VERHTGSLNDEWLLAADLIV   70 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-cC---CEEEeCCCCHHHhcCCCEEE
Confidence            35688999999999999999886 689999999997654321110       11 11   11111111224456788766


Q ss_pred             EccCCChhhhh----------hccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          242 LHPVLDKTTYH----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       242 l~~Plt~~T~~----------li~~-~~~~~-mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      ...-..++...          ++.+ +.+.. ++.-.+-|--+.|..--..-|...|+.
T Consensus        71 ~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         71 ASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             ECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            54322222111          2222 33333 333355566677887766667777764

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.73  E-value=1.1  Score=44.06  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~  201 (398)
                      .|.+|.|+|.|.+|...++.+ +.+|++ |++.+++...
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~  200 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPER  200 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence            488999999999999999985 899998 9998876543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK12742 oxidoreductase; Provisional

Probab=91.63  E-value=1  Score=41.59  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      .+.||++.|.|. |.||+.+|+.| ...|++|+...+.
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~   39 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG   39 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence            477899999996 89999999998 5789998876553

>PRK07411 hypothetical protein; Validated

Probab=91.62  E-value=0.69  Score=47.31  Aligned_cols=102  Identities=19%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Ccc-
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVT-  223 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~-  223 (398)
                      ..|+..+|.|||+|.+|..+|+.|+ ..|. ++..+|...-..  + +++           .+.....+++.... .+. 
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~  112 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL  112 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            4699999999999999999999985 5565 688888653211  0 000           00011111111110 000 


Q ss_pred             cc-cc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCC
Q 015895          224 WK-RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK  264 (398)
Q Consensus       224 ~~-~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~  264 (398)
                      +. ..  .+..++++.+|+|+.|+- +.+++.++++.....-+|
T Consensus       113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence            00 11  134567889998888875 567888888776655444

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=91.58  E-value=2.2  Score=43.89  Aligned_cols=115  Identities=18%  Similarity=0.222  Sum_probs=67.3

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcCCCCccccccCCHHHHhhcCCEEEEcc-
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASSMDEVLREADVISLHP-  244 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sl~ell~~aDiV~l~~-  244 (398)
                      ++.|||+|.+|.++|+.| +..|++|.++|............    .++ ..|.   .+....+ .+.+..+|+|+... 
T Consensus         1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~~gi---~~~~g~~-~~~~~~~d~vv~sp~   71 (433)
T TIGR01087         1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLNEGS---VLHTGLH-LEDLNNADLVVKSPG   71 (433)
T ss_pred             CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhccCc---EEEecCc-hHHhccCCEEEECCC
Confidence            378999999999999997 78999999999765432111000    001 0121   1111123 34567899887654 


Q ss_pred             -CC-Chhhh-------hhccHH-HH-hcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          245 -VL-DKTTY-------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       245 -Pl-t~~T~-------~li~~~-~~-~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                       |. +|+-.       .++.+- .+ ..++...+-|.-+.|..--..=+...|+...
T Consensus        72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence             32 22211       123332 22 3344456677778898887777777777643

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=91.51  E-value=0.5  Score=46.54  Aligned_cols=108  Identities=22%  Similarity=0.212  Sum_probs=69.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC--CCCccccccCC---------
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG--EQPVTWKRASS---------  229 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s---------  229 (398)
                      -...+.++-++|+|-+|-..+-. +...|.-|..+|-.+....+  .+..+..+....  +..-|+.+..|         
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keq--v~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~  236 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQ--VESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAE  236 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhh--hhhcccccccccccccCCCccccCCHHHHHHHHH
Confidence            45777788999999999998876 46788888888876543211  111111111110  01112222222         


Q ss_pred             -HHHHhhcCCEEEE--ccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          230 -MDEVLREADVISL--HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       230 -l~ell~~aDiV~l--~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                       +.|..++.|||+.  .+|.-+ .-.|+.++..+.||||+++||.+
T Consensus       237 ~~a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         237 LVAEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence             3456789999964  467644 46788999999999999999984

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=91.49  E-value=0.76  Score=43.62  Aligned_cols=35  Identities=23%  Similarity=0.112  Sum_probs=29.4

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcC
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDL  197 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~  197 (398)
                      ++.||++.|.|.   +.||+++|++++ ..|++|+..++
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la-~~G~~v~~~~~   40 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYL   40 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEEec
Confidence            478999999997   489999999984 78999877643

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=91.48  E-value=2.2  Score=44.39  Aligned_cols=118  Identities=15%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhc--C----C--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEG--F----K--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~--f----G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      -+|+|||. |.||..+|-.|+..  |    +  -+++.+|.........-.+..++.. ... .  ......+-.+.+++
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~-~~~-~--~v~i~~~~ye~~kd  176 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY-PLL-R--EVSIGIDPYEVFQD  176 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh-hhc-C--ceEEecCCHHHhCc
Confidence            37999999 99999999887432  2    2  3788889877653322222111110 000 0  11111234567899


Q ss_pred             CCEEEEccCC--Ch-hhh-hhc--cH-------HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          237 ADVISLHPVL--DK-TTY-HLI--NK-------ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       237 aDiV~l~~Pl--t~-~T~-~li--~~-------~~~~~-mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      ||+|++..-.  .+ ++| .++  |.       +.+.. ..+.+++|.++  .++|.-..+-.-.+|
T Consensus       177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~sg  241 (444)
T PLN00112        177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNAP  241 (444)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHcC
Confidence            9999987543  22 122 122  11       23444 47889999987  567777755544443

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.48  E-value=0.56  Score=48.90  Aligned_cols=111  Identities=23%  Similarity=0.281  Sum_probs=64.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .||+|+|+|+|.-|.++|+.| +. |++|+++|........ . ..    +..   ..  ... ....+.+.++|+|+..
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~~-~-~~----~~~---~~--~~~-~~~~~~~~~~d~vV~S   70 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRDI-F-EE----LYS---KN--AIA-ALSDSRWQNLDKIVLS   70 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchHH-H-Hh----hhc---Cc--eec-cCChhHhhCCCEEEEC
Confidence            478999999999999999998 55 9999999954332111 0 00    000   00  101 1123456789998876


Q ss_pred             cCCChhhh----------hhccHH-HH-hcCCC-CcEEEEcCCCchhcHHHHHHHHhc
Q 015895          244 PVLDKTTY----------HLINKE-RL-ATMKK-EAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       244 ~Plt~~T~----------~li~~~-~~-~~mk~-gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      .--.+...          .++++- .+ ..+++ ..+-|--+.|..--..-+...|+.
T Consensus        71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            42222211          133332 22 33433 345566677887777777777775

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=91.37  E-value=1.7  Score=42.61  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=32.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~  199 (398)
                      ..|...+|.|+|+|.+|.++|+.|+ ..|. ++..+|+..
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Confidence            4588999999999999999999985 5665 688898764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=91.35  E-value=2.2  Score=42.76  Aligned_cols=73  Identities=11%  Similarity=0.102  Sum_probs=46.0

Q ss_pred             c-CCCeEEEEecC-------hhHHHHHHHHHhcCCcEEEEEcC-C---hhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895          163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-Y---QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       163 l-~gktvGIIGlG-------~IG~~vA~~la~~fG~~V~~~d~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      + .|++|+|+|.|       ++.++.+..+ ..||++|.+..| .   +.+..-...+.+   ....|   ..+....++
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~~~g---~~~~~~~d~  238 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQN---AAESG---GSLTVSHDI  238 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHH---HHHcC---CeEEEEcCH
Confidence            6 78999887654       6788888876 589999999988 2   222111000000   11112   123345789


Q ss_pred             HHHhhcCCEEEE
Q 015895          231 DEVLREADVISL  242 (398)
Q Consensus       231 ~ell~~aDiV~l  242 (398)
                      +|.+++||+|..
T Consensus       239 ~ea~~~aDvvy~  250 (335)
T PRK04523        239 DSAYAGADVVYA  250 (335)
T ss_pred             HHHhCCCCEEEe
Confidence            999999999965

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=91.27  E-value=1.1  Score=44.89  Aligned_cols=36  Identities=19%  Similarity=0.419  Sum_probs=31.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .|++|.|.|.|.+|...++.+ +.+|++|++.+....
T Consensus       183 ~g~~VlV~G~G~vG~~avq~A-k~~Ga~vi~~~~~~~  218 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIG-KAFGLKVTVISSSSN  218 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            578999999999999999985 899999988776553

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=91.18  E-value=0.59  Score=38.95  Aligned_cols=99  Identities=13%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             ecChhHHHHHHHHHhc---CCcEEE-EEcCC--hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEc
Q 015895          172 GAGRIGSAYARMMVEG---FKMNLI-YYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (398)
Q Consensus       172 GlG~IG~~vA~~la~~---fG~~V~-~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l~  243 (398)
                      |+|.||+.+++.+...   +++++. ++|++  .........          .    ......++++++.  ..|+|+=|
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF----------P----DEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH----------T----HSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc----------c----cccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999998432   266654 45665  111111000          0    0123468999988  99999988


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh---cHHHHHHHHhcC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI---DEVALVEHLKQN  289 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v---de~aL~~aL~~g  289 (398)
                      .+. +...    +-....++.|.-+|-++-|.+.   .-+.|.++.+++
T Consensus        67 t~~-~~~~----~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~  110 (117)
T PF03447_consen   67 TSS-EAVA----EYYEKALERGKHVVTANKGALADEALYEELREAARKN  110 (117)
T ss_dssp             SSC-HHHH----HHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred             CCc-hHHH----HHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence            653 2222    2344556789999999888887   233355544443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=91.16  E-value=1.1  Score=44.36  Aligned_cols=100  Identities=23%  Similarity=0.295  Sum_probs=58.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--c-CCHHHHhhcCCE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~sl~ell~~aDi  239 (398)
                      ++|+|||. |++|+.+|-.+ ...+  -++..+|.. ...- .-.+     +.+.. .......  . +++.+.++.||+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l-~~~~~~~elvLiDi~-~a~g-~alD-----L~~~~-~~~~i~~~~~~~~~y~~~~daDi   71 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLL-KLNPLVSELALYDIV-NTPG-VAAD-----LSHIN-TPAKVTGYLGPEELKKALKGADV   71 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCCcEEEEEecC-ccce-eehH-----hHhCC-CcceEEEecCCCchHHhcCCCCE
Confidence            47999999 99999999887 3344  489999987 2211 0011     11111 1111111  1 234577899999


Q ss_pred             EEEccCC--Ch-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCC
Q 015895          240 ISLHPVL--DK-TTY-HLI--NK-------ERLATMKKEAILVNCSRG  274 (398)
Q Consensus       240 V~l~~Pl--t~-~T~-~li--~~-------~~~~~mk~gailIN~aRG  274 (398)
                      |+++.-.  .+ +|| .++  |.       +.+..-.|.+++|+++-.
T Consensus        72 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          72 VVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            9877543  22 233 222  21       234445789999999764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.11  E-value=0.9  Score=44.40  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=28.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCCh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQ  199 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~  199 (398)
                      .|+++.|+|.|.||...++.+ +.+|++ |++.|+..
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~  179 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNP  179 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCH
Confidence            467899999999999999875 889997 55666654

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=91.05  E-value=2.3  Score=36.94  Aligned_cols=98  Identities=17%  Similarity=0.197  Sum_probs=63.4

Q ss_pred             HHHHHHhcCCcEEEEEcCChhh---HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895          180 YARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (398)
Q Consensus       180 vA~~la~~fG~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~  256 (398)
                      .+++| ...|.+|++=.-....   ..+.|        ..+|     .....+.+|++++||+|+-.-|.+        .
T Consensus        19 ~v~~L-~~~G~~V~VE~gaG~~a~fsD~~Y--------~~aG-----A~I~~~~~ev~~~adiIl~v~~p~--------~   76 (136)
T PF05222_consen   19 DVKKL-VKLGHEVLVESGAGEGAGFSDEEY--------EEAG-----AEIVSRAEEVYSDADIILKVKPPS--------E   76 (136)
T ss_dssp             HHHHH-HHTTSEEEEETTTTGGGTB-HHHH--------HHTT-----EEEESSHHHHHTTSSEEEESS-----------G
T ss_pred             HHHHH-HhCCCEEEEECCCCCcCcccHHHH--------hhCC-----cEEecCchhhcccCCEEEEECCCC--------H
Confidence            44555 4679999876544221   11222        1122     333456679999999998776643        4


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCC
Q 015895          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (398)
Q Consensus       257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~  301 (398)
                      +.++.|++|.++|-...-.  ....+++.|.+.++...++|-...
T Consensus        77 ~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   77 EELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             GGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             HHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            5677899999999887654  588899999999999999887654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PRK10537 voltage-gated potassium channel; Provisional

Probab=91.04  E-value=1.1  Score=45.90  Aligned_cols=91  Identities=8%  Similarity=-0.090  Sum_probs=53.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el----l~~aDiV  240 (398)
                      ..++-|+|+|++|+.+++.| +..|.++++.|+......           .+.+. ..-.....+.+.+    +++|+.|
T Consensus       240 k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~~~-----------~~~g~-~vI~GD~td~e~L~~AgI~~A~aV  306 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLEHR-----------LPDDA-DLIPGDSSDSAVLKKAGAARARAI  306 (393)
T ss_pred             CCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhhhh-----------ccCCC-cEEEeCCCCHHHHHhcCcccCCEE
Confidence            56799999999999999998 678888888887532211           01111 1111112222222    5688999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                      +++++.+.++.-.  ....+.+.|+..+|-
T Consensus       307 I~~t~dD~~Nl~i--vL~ar~l~p~~kIIa  334 (393)
T PRK10537        307 LALRDNDADNAFV--VLAAKEMSSDVKTVA  334 (393)
T ss_pred             EEcCCChHHHHHH--HHHHHHhCCCCcEEE
Confidence            9888864444332  234555555544443

>PRK05442 malate dehydrogenase; Provisional

Probab=90.98  E-value=1.8  Score=43.29  Aligned_cols=112  Identities=16%  Similarity=0.121  Sum_probs=60.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cCCc-----EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895          166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~fG~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~  235 (398)
                      ++|+|||. |.+|+.+|-.+.. ++--     ++..+|.....  ....-.+.     .+.. ..........+..+.++
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl-----~~~~~~~~~~~~i~~~~y~~~~   79 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMEL-----DDCAFPLLAGVVITDDPNVAFK   79 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhh-----hhhhhhhcCCcEEecChHHHhC
Confidence            37999998 9999999987632 2212     79999985421  11110111     0000 00000111134557789


Q ss_pred             cCCEEEEccCC--Ch-hhhh-hc--cHH-------HHhc-CCCCcEEEEcCCCchhcHHHHHH
Q 015895          236 EADVISLHPVL--DK-TTYH-LI--NKE-------RLAT-MKKEAILVNCSRGPVIDEVALVE  284 (398)
Q Consensus       236 ~aDiV~l~~Pl--t~-~T~~-li--~~~-------~~~~-mk~gailIN~aRG~~vde~aL~~  284 (398)
                      +||+|+++.-.  .+ +||. ++  |.+       .+.. .++.+++|.++  .++|.-.-+-
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~  140 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIA  140 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHH
Confidence            99999887542  22 2332 22  111       2333 44788999988  5666655433

>CHL00194 ycf39 Ycf39; Provisional

Probab=90.95  E-value=1  Score=44.14  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=45.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV~l  242 (398)
                      ++|.|.| .|.||+.+++.| ...|.+|.+.+|..+... .        +...+....  ......++.++++.+|+|+.
T Consensus         1 MkIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~-~--------l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~   70 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKAS-F--------LKEWGAELVYGDLSLPETLPPSFKGVTAIID   70 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhh-h--------HhhcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence            4789999 599999999998 577999999988754321 0        001111000  01112356778999999886


Q ss_pred             ccC
Q 015895          243 HPV  245 (398)
Q Consensus       243 ~~P  245 (398)
                      +.+
T Consensus        71 ~~~   73 (317)
T CHL00194         71 AST   73 (317)
T ss_pred             CCC
Confidence            644

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=90.81  E-value=1.3  Score=43.73  Aligned_cols=106  Identities=17%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             EEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC--
Q 015895          170 VIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL--  246 (398)
Q Consensus       170 IIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Pl--  246 (398)
                      |||.|.||+.+|-.++. ++.-++..+|.........-.+...... ... ......  ..-.+.+++||+|++..-.  
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~-~~~-~~~~i~--~~~~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS-FLP-TPKKIR--SGDYSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc-ccC-CCeEEe--cCCHHHHCCCCEEEECCCCCC
Confidence            69999999999987742 4444899999865432211111110000 000 011111  2334678999999987543  


Q ss_pred             Ch-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          247 DK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       247 t~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      .+ .+| .++  |       .+.+....+.+++|+++  .++|.-.
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t  120 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT--NPVDILT  120 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CHHHHHH
Confidence            22 122 222  1       12344457889999987  4455444

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK08324 short chain dehydrogenase; Validated

Probab=90.70  E-value=0.83  Score=50.05  Aligned_cols=40  Identities=30%  Similarity=0.373  Sum_probs=35.0

Q ss_pred             cccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ..+.||++.|.| .|.||+.+|+.+ ...|++|++.|++...
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence            457899999999 599999999998 5789999999988754

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=90.61  E-value=2.2  Score=44.43  Aligned_cols=125  Identities=17%  Similarity=0.284  Sum_probs=74.3

Q ss_pred             CeEEEEecChhHHH--HHHHHHh---cCC-cEEEEEcCChhhHHHHHHhhhhhhh-hhcCCCCccccccCCHHHHhhcCC
Q 015895          166 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       166 ktvGIIGlG~IG~~--vA~~la~---~fG-~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      ++|.|||.|.. ..  +.+-+.+   .++ -+|..+|...... +. ...+...+ +..+ .+..+....+.+|.++.||
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g-~~~~v~~Ttdr~eAl~gAD   76 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENY-PEIKFVYTTDPEEAFTDAD   76 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhC-CCeEEEEECCHHHHhCCCC
Confidence            47999999986 33  2222221   344 6899999987542 11 11222222 2223 2444556678999999999


Q ss_pred             EEEEccCCCh-h----------hhhhcc----------------------HHHHhcCCCCcEEEEcCCCchhcHHHHHHH
Q 015895          239 VISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEH  285 (398)
Q Consensus       239 iV~l~~Plt~-~----------T~~li~----------------------~~~~~~mk~gailIN~aRG~~vde~aL~~a  285 (398)
                      ||++.+--.. +          -+|+++                      .+.+....|++++||.+-.--+-..++.+.
T Consensus        77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~  156 (437)
T cd05298          77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL  156 (437)
T ss_pred             EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH
Confidence            9987654321 1          122322                      122444568999999999776666777666


Q ss_pred             HhcCCccEE
Q 015895          286 LKQNPMFRV  294 (398)
Q Consensus       286 L~~g~i~gA  294 (398)
                      ....++.|.
T Consensus       157 ~~~~kviGl  165 (437)
T cd05298         157 FPNARILNI  165 (437)
T ss_pred             CCCCCEEEE
Confidence            544555554

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=90.61  E-value=0.42  Score=47.37  Aligned_cols=34  Identities=35%  Similarity=0.631  Sum_probs=28.2

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~  199 (398)
                      ++|+|||.|.||+++|-+|.. .++-++..||...
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~   35 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINE   35 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEccc
Confidence            479999999999999988742 5566899999873

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=90.59  E-value=1.6  Score=43.81  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~  201 (398)
                      .|.+|.|.|.|.||...++.+ +..|+ +|++.+++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~la-k~~G~~~Vi~~~~~~~r  228 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGA-VAAGASQVVAVDLNEDK  228 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEEcCCHHH
Confidence            478999999999999999875 89999 69998877654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=90.50  E-value=1.8  Score=39.68  Aligned_cols=117  Identities=16%  Similarity=0.234  Sum_probs=67.0

Q ss_pred             eEEEEecChhHHH--HHHHHH--hcCC-cEEEEEcCChhhH--HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          167 TVGVIGAGRIGSA--YARMMV--EGFK-MNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       167 tvGIIGlG~IG~~--vA~~la--~~fG-~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      +|.|||.|..--.  +..-+.  ..+. .++..+|.+....  ...+.+.+   .++.+ .+..+....+.+|.++.||+
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~---~~~~~-~~~~v~~ttd~~eAl~gADf   76 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM---VEEAG-ADLKVEATTDRREALEGADF   76 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH---HHHCT-TSSEEEEESSHHHHHTTESE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH---HHhcC-CCeEEEEeCCHHHHhCCCCE
Confidence            5899999986544  222221  2454 4899999988542  12222221   22333 34445556789999999999


Q ss_pred             EEEccCCChh-----------hhhhcc------------------------HHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 015895          240 ISLHPVLDKT-----------TYHLIN------------------------KERLATMKKEAILVNCSRGPVIDEVALVE  284 (398)
Q Consensus       240 V~l~~Plt~~-----------T~~li~------------------------~~~~~~mk~gailIN~aRG~~vde~aL~~  284 (398)
                      |++.+--...           -+|+..                        .+.++...|+|+++|.+-..-+...++.+
T Consensus        77 Vi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r  156 (183)
T PF02056_consen   77 VINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSR  156 (183)
T ss_dssp             EEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHH
T ss_pred             EEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHH
Confidence            9987653211           111111                        12345567899999999887777777665


Q ss_pred             HHh
Q 015895          285 HLK  287 (398)
Q Consensus       285 aL~  287 (398)
                      ...
T Consensus       157 ~~~  159 (183)
T PF02056_consen  157 YTP  159 (183)
T ss_dssp             HST
T ss_pred             hCC
Confidence            543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=90.50  E-value=1.1  Score=44.57  Aligned_cols=77  Identities=21%  Similarity=0.189  Sum_probs=48.1

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|+||| .|-.|+++.+.| .... .++.....+...                   .     ..+.++.++++|+++++
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL-~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFla   57 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERL-AGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILC   57 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHH-hcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEEC
Confidence            4799999 599999999998 4443 455443222110                   0     02334567889999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|.. ....+. .+.   .+.|..+||.|
T Consensus        58 lp~~-~s~~~~-~~~---~~~g~~VIDlS   81 (313)
T PRK11863         58 LPDD-AAREAV-ALI---DNPATRVIDAS   81 (313)
T ss_pred             CCHH-HHHHHH-HHH---HhCCCEEEECC
Confidence            9952 222222 221   24688899887

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=90.45  E-value=0.79  Score=44.14  Aligned_cols=96  Identities=15%  Similarity=0.171  Sum_probs=70.0

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (398)
Q Consensus       177 G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~  256 (398)
                      |..+|-.+| ..|++|+..||+..-..+..++    ++.++|     +...++-.+..+.+.+.++.+|....|-++. +
T Consensus        33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w~----~vedAG-----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-r  101 (340)
T COG4007          33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHWK----RVEDAG-----VEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-R  101 (340)
T ss_pred             chHHHHHHH-HcCCcEEeecCCccccCHHHHH----HHHhcC-----cEEecCchhhhhcceEEEEecccchhhHHHH-H
Confidence            667887774 6799999999987643333222    233444     3334455677899999999999988887764 7


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895          257 ERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (398)
Q Consensus       257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL  286 (398)
                      +.+..++.|+++-|+.+-+.+   .|+..|
T Consensus       102 ei~~hvpEgAVicnTCT~sp~---vLy~~L  128 (340)
T COG4007         102 EILEHVPEGAVICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             HHHhhCcCCcEecccccCchh---HHHHHh
Confidence            899999999999999887654   455544

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=90.29  E-value=0.94  Score=45.29  Aligned_cols=91  Identities=15%  Similarity=0.232  Sum_probs=50.8

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~fG~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      +++|+|+|. |.+|+.+.+.| ...++   ++.+..+..... ..        +.-.+ ....+... +. +.++.+|+|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL-~~~~hp~~~l~~l~s~~~~g-~~--------l~~~g-~~i~v~d~-~~-~~~~~vDvV   67 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNIL-EERNFPVDKLRLLASARSAG-KE--------LSFKG-KELKVEDL-TT-FDFSGVDIA   67 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HhCCCCcceEEEEEccccCC-Ce--------eeeCC-ceeEEeeC-CH-HHHcCCCEE
Confidence            468999997 99999999998 45433   445554332210 00        00001 11111111 22 334789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ++++|.. .++.+. .+.   .+.|+++||.|.
T Consensus        68 f~A~g~g-~s~~~~-~~~---~~~G~~VIDlS~   95 (334)
T PRK14874         68 LFSAGGS-VSKKYA-PKA---AAAGAVVIDNSS   95 (334)
T ss_pred             EECCChH-HHHHHH-HHH---HhCCCEEEECCc
Confidence            9999852 333332 222   356889998874

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=90.25  E-value=1.6  Score=40.61  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+.||++.|.|. |.||+.+|+.| ...|++|+..++...
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~vi~~~r~~~   40 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGL-AEAGADIVGAGRSEP   40 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCchH
Confidence            378999999998 89999999998 478999999988653

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.12  E-value=1.6  Score=42.87  Aligned_cols=37  Identities=19%  Similarity=0.402  Sum_probs=31.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      -.|.++.|.|.|.+|+.+++.+ +.+|++|++.+++..
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~  204 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPS  204 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHH
Confidence            3567899999999999999885 899999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK09189 uroporphyrinogen-III synthase; Validated

Probab=90.10  E-value=6.2  Score=37.10  Aligned_cols=57  Identities=14%  Similarity=0.182  Sum_probs=33.7

Q ss_pred             eEEEEeCCCCchH-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCc
Q 015895           16 YRVVSTKPMPGTR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE   72 (398)
Q Consensus        16 ~kvlv~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~   72 (398)
                      |+||||.+-+... ..+.|++.|+++...+.-+....+++....+.+.+|.+|..|..
T Consensus         1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~n   58 (240)
T PRK09189          1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAE   58 (240)
T ss_pred             CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHH
Confidence            6899999877633 45778888988766543222111233333333347888766543

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.09  E-value=1.5  Score=44.35  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=31.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .|.+|.|.|.|.+|...++.+ +.+|++|++.++..+
T Consensus       178 ~g~~VlV~G~G~vG~~avq~A-k~~Ga~Vi~~~~~~~  213 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIG-KAFGLRVTVISRSSE  213 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHH-HHcCCeEEEEeCChH
Confidence            588999999999999999985 899999999887653

>cd08293 PTGR2 Prostaglandin reductase

Probab=90.06  E-value=2.1  Score=41.97  Aligned_cols=36  Identities=22%  Similarity=0.130  Sum_probs=30.5

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~fG~-~V~~~d~~~~~  201 (398)
                      |.+|.|.|. |.+|+..++.+ +.+|+ +|++.+++...
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlA-k~~G~~~Vi~~~~s~~~  192 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIG-RLLGCSRVVGICGSDEK  192 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHcCCCEEEEEcCCHHH
Confidence            489999998 99999999974 89998 89998876543

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=90.04  E-value=1.8  Score=43.12  Aligned_cols=107  Identities=22%  Similarity=0.209  Sum_probs=58.4

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCChhhH-HH-HHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR-LE-KFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (398)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~fG~-------~V~~~d~~~~~~-~~-~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~  235 (398)
                      +|+|||. |.+|+.+|..|+ ..+.       ++..+|...... .+ ...+.     .+.. ..........+..+.++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~-~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl-----~d~~~~~~~~~~~~~~~~~~~~   74 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIA-RGRMLGKDQPIILHLLDIPPAMKVLEGVVMEL-----MDCAFPLLDGVVPTHDPAVAFT   74 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHH-hccccCCCCccEEEEEecCCcccccceeEeeh-----hcccchhcCceeccCChHHHhC
Confidence            5899999 999999998873 3332       588999854321 11 00000     0000 00001111124467789


Q ss_pred             cCCEEEEccCC--Ch-hhh-hhc--c-------HHHHhcC-CCCcEEEEcCCCchhcHHH
Q 015895          236 EADVISLHPVL--DK-TTY-HLI--N-------KERLATM-KKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       236 ~aDiV~l~~Pl--t~-~T~-~li--~-------~~~~~~m-k~gailIN~aRG~~vde~a  281 (398)
                      +||+|++..-.  .+ +|+ .++  |       ...+... ++.+++|.++  .++|.-.
T Consensus        75 ~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        75 DVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            99999877543  21 222 222  1       1234444 5788898887  5666655

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=90.03  E-value=0.84  Score=42.31  Aligned_cols=39  Identities=28%  Similarity=0.282  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+.+|++.|.| .|.||+.+++.| ...|++|++.+++...
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l-~~~g~~V~~~~r~~~~   42 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRL-AADGAEVIVVDICGDD   42 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            46789999999 699999999998 4779999999988643

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.01  E-value=1.8  Score=43.25  Aligned_cols=97  Identities=16%  Similarity=0.157  Sum_probs=56.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sl~ell~~aDiV~  241 (398)
                      -.|.++.|.|.|.+|...++.+ +..|.+|++.++....... ..       +..|....... ....+.++....|+++
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~A-k~~G~~vi~~~~~~~~~~~-~~-------~~~Ga~~~i~~~~~~~~~~~~~~~D~vi  249 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSDKKREE-AL-------EHLGADDYLVSSDAAEMQEAADSLDYII  249 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HH-------HhcCCcEEecCCChHHHHHhcCCCcEEE
Confidence            3578999999999999999875 8999999888776543211 11       11222110000 0011223333467777


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      -+++...     .-...+..++++..++.++.
T Consensus       250 d~~g~~~-----~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        250 DTVPVFH-----PLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ECCCchH-----HHHHHHHHhccCCEEEEECC
Confidence            7765311     11345667778888877754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=89.98  E-value=1.7  Score=42.66  Aligned_cols=104  Identities=15%  Similarity=0.125  Sum_probs=67.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      |++++|||--.=-..+++.| ...|++|..|.-.....               + . .++....+.++.++++|+|++=+
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~-~-~~~~~~~~~~~~~~~~~~~i~p~   62 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------G-F-TGAVKCELLELDLTTLDVVILPV   62 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------c-c-ccceeecchhhhhccCCEEEECC
Confidence            68999999888888899998 68899887775321100               0 0 12233345566689999999999


Q ss_pred             CCChhhh----------hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          245 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       245 Plt~~T~----------~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      |.+.+..          -.++++.++.|+++++ +-++.    +..++-++.++..+
T Consensus        63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi  114 (287)
T TIGR02853        63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGV  114 (287)
T ss_pred             ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCC
Confidence            9766531          1256889999998655 34443    33444445555444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd00704 MDH Malate dehydrogenase

Probab=89.98  E-value=1.8  Score=43.10  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=62.1

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCCh--hhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQ--ATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (398)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~fG~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~  235 (398)
                      +|+|+|. |.||+.+|..|+ .-+.       ++..+|...  +.......+     +.+.. ..........+..+.++
T Consensus         2 KV~IiGAaG~VG~~~a~~L~-~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~D-----l~d~~~~~~~~~~i~~~~~~~~~   75 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIA-SGELFGDDQPVILHLLDIPPAMKALEGVVME-----LQDCAFPLLKGVVITTDPEEAFK   75 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHH-hCCccCCCCceEEEEEecCCccCccceeeee-----hhhhcccccCCcEEecChHHHhC
Confidence            7999999 999999999874 2221       588999875  211000000     00000 00000111135678899


Q ss_pred             cCCEEEEccCC--Ch-hhhh-hc--cH-------HHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          236 EADVISLHPVL--DK-TTYH-LI--NK-------ERLATM-KKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       236 ~aDiV~l~~Pl--t~-~T~~-li--~~-------~~~~~m-k~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      +||+|++..-.  .+ +||. ++  |.       ..+... ++.+++|.++  .++|.-+-+-.-.+|
T Consensus        76 ~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~k~sg  141 (323)
T cd00704          76 DVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIALKNAP  141 (323)
T ss_pred             CCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHHHHHcC
Confidence            99999876432  22 2321 11  11       234444 5888888885  566666544333333

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06172 short chain dehydrogenase; Provisional

Probab=89.95  E-value=0.72  Score=43.18  Aligned_cols=39  Identities=23%  Similarity=0.194  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+.||++.|.|. |.||+.+|++| ...|++|+..+++...
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~   43 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAF-AREGAKVVVADRDAAG   43 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999997 89999999998 4789999999987653

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=89.93  E-value=1.4  Score=41.26  Aligned_cols=39  Identities=26%  Similarity=0.198  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+.||++.|.|. |.||+.+|++| ...|++|+..+++..+
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l-~~~G~~V~~~~r~~~~   46 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGL-AQAGAEVILNGRDPAK   46 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999996 99999999998 4679999999987643

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=89.80  E-value=0.51  Score=41.71  Aligned_cols=32  Identities=34%  Similarity=0.545  Sum_probs=24.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL  197 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~  197 (398)
                      .+|||+|+|+||+.+++.+...-++++.+ +|+
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            37999999999999999864345777665 554

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=89.74  E-value=2.3  Score=42.14  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|.+|.|.|.|.||...++.+ +..|.+|++.+++...
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence            478999999999999999985 8899999999886643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK12747 short chain dehydrogenase; Provisional

Probab=89.74  E-value=2.1  Score=40.05  Aligned_cols=34  Identities=29%  Similarity=0.209  Sum_probs=28.7

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcC
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL  197 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~  197 (398)
                      +.||++.|.|. |.||+++|+.| ...|++|+..+.
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~   36 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYG   36 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcC
Confidence            46889999995 79999999998 578999988653

>PRK06114 short chain dehydrogenase; Provisional

Probab=89.73  E-value=0.74  Score=43.31  Aligned_cols=38  Identities=29%  Similarity=0.304  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+.||++.|.|- |.||+.+|++| ...|++|++.+++.+
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~   43 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD   43 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            478999999985 79999999998 578999999988654

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=89.59  E-value=0.96  Score=42.90  Aligned_cols=97  Identities=14%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      +|-+..-..+|+||.|+.|+....+. ..-+|..-+.......+...+.+.|       ...+      .+++...+..+
T Consensus         4 ~~~~~~~v~~~~vgtgrl~ra~~~ra-~h~~~~cs~i~srS~~~a~~LaE~~-------~a~p------~d~~~~ael~~   69 (289)
T COG5495           4 DGLRPARVVVGIVGTGRLGRAALLRA-DHVVVACSAISSRSRDRAQNLAETY-------VAPP------LDVAKSAELLL   69 (289)
T ss_pred             cCccceeeEEEEeecchHHHHHHHHh-cchheeehhhhhcCHHHHhhchhcc-------CCCc------cchhhChhhhc
Confidence            45566678899999999999977774 5667776665443333333222221       1111      23444455668


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ++++-+|..    -++.-..-..-+||++++-||=
T Consensus        70 ~vfv~vpd~----~~s~vaa~~~~rpg~iv~HcSg  100 (289)
T COG5495          70 LVFVDVPDA----LYSGVAATSLNRPGTIVAHCSG  100 (289)
T ss_pred             eEEecchHH----HHHHHHHhcccCCCeEEEEccC
Confidence            888888852    3333344555689999999965

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=89.57  E-value=1.7  Score=41.78  Aligned_cols=36  Identities=28%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~  200 (398)
                      .|.+|.|+|.|.||...++.+ +.+|.+ |++.+++..
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPD  156 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHH
Confidence            688999999999999999985 899986 888876654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK06182 short chain dehydrogenase; Validated

Probab=89.55  E-value=1.4  Score=41.99  Aligned_cols=37  Identities=22%  Similarity=0.130  Sum_probs=31.7

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+|++.|.|. |.||+.+|+.+ ...|++|++.+++...
T Consensus         2 ~~k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~   39 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRL-AAQGYTVYGAARRVDK   39 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            4789999996 89999999998 4789999999987653

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=89.49  E-value=1.1  Score=44.65  Aligned_cols=107  Identities=17%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (398)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~fG~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~  235 (398)
                      +|+|||. |.+|+.+|-.| ...+.       +++.+|.....  ....-.+.     .+.. ..........+..+.++
T Consensus         5 KV~IIGa~G~VG~~~a~~l-~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl-----~~~~~~~~~~~~i~~~~~~~~~   78 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRI-ASGELFGKDQPVVLHLLDIPPAMKALEGVAMEL-----EDCAFPLLAGVVATTDPEEAFK   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHH-HhCCcccCCCccEEEEEecCCcccccchHHHHH-----hhccccccCCcEEecChHHHhC
Confidence            7999998 99999999876 33343       79999985421  11111111     1110 00000111134557789


Q ss_pred             cCCEEEEccCCC--h-hhhh-hc--cH-------HHHhcCC-CCcEEEEcCCCchhcHHH
Q 015895          236 EADVISLHPVLD--K-TTYH-LI--NK-------ERLATMK-KEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       236 ~aDiV~l~~Plt--~-~T~~-li--~~-------~~~~~mk-~gailIN~aRG~~vde~a  281 (398)
                      +||+|+++.-..  + +||. ++  |.       ..+.... +.+++|.++  .++|.-.
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            999999875432  2 2332 22  11       1233334 488999886  5565555

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=89.49  E-value=2.4  Score=42.22  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~  201 (398)
                      .|.+|.|.|.|.+|+..++.+ +.+|++ |++.+++...
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~a-k~~G~~~Vi~~~~~~~~  213 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGA-ALAGASKIIAVDIDDRK  213 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            478999999999999999985 899985 9888876543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK13529 malate dehydrogenase; Provisional

Probab=89.46  E-value=6.6  Score=41.97  Aligned_cols=209  Identities=20%  Similarity=0.207  Sum_probs=122.8

Q ss_pred             hhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHH
Q 015895          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV  185 (398)
Q Consensus       106 ~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la  185 (398)
                      .+..|.+.|+.-   ..+|-.+++-+|+..|-                     .|..|...++.|.|.|..|-.+|+.+.
T Consensus       260 yr~~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~  315 (563)
T PRK13529        260 YRDEICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIV  315 (563)
T ss_pred             hccCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHH
Confidence            345799998744   46677889999888882                     345788999999999999999999875


Q ss_pred             hc---CCc-------EEEEEcCCh---hh--HHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhcC--CEEEEccC
Q 015895          186 EG---FKM-------NLIYYDLYQ---AT--RLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPV  245 (398)
Q Consensus       186 ~~---fG~-------~V~~~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~sl~ell~~a--DiV~l~~P  245 (398)
                      .+   .|.       +++.+|+..   ..  .+..+...|..   . ......+   ....+|.|+++.+  |+++-+- 
T Consensus       316 ~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~---~-~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S-  390 (563)
T PRK13529        316 AAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYAR---K-REELADWDTEGDVISLLEVVRNVKPTVLIGVS-  390 (563)
T ss_pred             HHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhh---h-cccccccccccCCCCHHHHHhccCCCEEEEec-
Confidence            32   466       788888762   11  12222222211   1 0000001   0124799999988  9987533 


Q ss_pred             CChhhhhhccHHHHhcCCC---CcEEEEcCCCchhcHHHHHHHHh--cCC-ccEEEeccCCCCCCCC--CCCCCCCceEE
Q 015895          246 LDKTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYMK--PGLSEMKNAIV  317 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~---gailIN~aRG~~vde~aL~~aL~--~g~-i~gAalDV~~~EP~~~--~~L~~~~nvil  317 (398)
                         ..-+.|.++.++.|.+   ..++.=.|....--|-.-.+|.+  +|+ |.+.|.- |.+-....  ..--+-.|+++
T Consensus       391 ---~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGsp-f~pv~~~G~~~~p~Q~NN~~i  466 (563)
T PRK13529        391 ---GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSP-FAPVEYNGKTYPIGQCNNAYI  466 (563)
T ss_pred             ---CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCC-CCCeeeCCeEeccCcCcceee
Confidence               2247899999999987   89999988876532322233333  354 4443331 11000000  01123458999


Q ss_pred             cCCCCCCcHH-----HHHHHHHHHHHHHHHHHcCC
Q 015895          318 VPHIASASKW-----TREGMATLAALNVLGKIKGY  347 (398)
Q Consensus       318 TPHia~~T~e-----a~~~~~~~~~~ni~~~l~g~  347 (398)
                      -|-++-....     --+.|...+++.+.....-+
T Consensus       467 FPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~  501 (563)
T PRK13529        467 FPGLGLGVIASGARRVTDGMLMAAAHALADCVPLA  501 (563)
T ss_pred             cccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccc
Confidence            9987653211     11445555556555554433

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=89.35  E-value=2.6  Score=41.15  Aligned_cols=94  Identities=20%  Similarity=0.137  Sum_probs=55.3

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHh-----hc
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVL-----RE  236 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sl~ell-----~~  236 (398)
                      .|.+|.|.| .|.+|+..++.+ +.+|++|++.+++.... + +       ++..|....-.... .++.+..     ..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~-~-~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~g  207 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKV-A-Y-------LKKLGFDVAFNYKTVKSLEETLKKASPDG  207 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH-H-H-------HHHcCCCEEEeccccccHHHHHHHhCCCC
Confidence            478999999 599999999985 89999999888765432 1 1       11222211100000 1232222     13


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .|+|+-++..    .. + ...++.++++..+|.++.
T Consensus       208 vdvv~d~~G~----~~-~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       208 YDCYFDNVGG----EF-S-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             eEEEEECCCH----HH-H-HHHHHHhCcCcEEEEecc
Confidence            5677665541    11 2 456777888888887754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.32  E-value=0.7  Score=35.76  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=29.3

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ++.|||-|.+|-++|..+ ..+|.+|..+++...
T Consensus         1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence            578999999999999998 689999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=89.32  E-value=1.1  Score=42.91  Aligned_cols=70  Identities=13%  Similarity=0.205  Sum_probs=44.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hc-CC
Q 015895          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE-AD  238 (398)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell------~~-aD  238 (398)
                      +|.|+|. |.||+.+++.| ..-|.+|.+..|+++.....          ........+....++.+.+      .. +|
T Consensus         1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~~----------~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d   69 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAGP----------NEKHVKFDWLDEDTWDNPFSSDDGMEPEIS   69 (285)
T ss_pred             CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccCC----------CCccccccCCCHHHHHHHHhcccCcCCcee
Confidence            3678887 99999999998 56799999998876532100          0000011122234566666      45 89


Q ss_pred             EEEEccCCC
Q 015895          239 VISLHPVLD  247 (398)
Q Consensus       239 iV~l~~Plt  247 (398)
                      .|+++.|..
T Consensus        70 ~v~~~~~~~   78 (285)
T TIGR03649        70 AVYLVAPPI   78 (285)
T ss_pred             EEEEeCCCC
Confidence            998887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=89.28  E-value=2.1  Score=42.93  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=24.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~  197 (398)
                      .+|||=|||+||+.+.|.+...-+.+|++.+.
T Consensus         3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd   34 (331)
T PRK15425          3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND   34 (331)
T ss_pred             eEEEEEeeChHHHHHHHHHHHCCCCEEEEEec
Confidence            37999999999999999753234678876654

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.25  E-value=4  Score=40.94  Aligned_cols=110  Identities=19%  Similarity=0.294  Sum_probs=61.0

Q ss_pred             eEEEEecChhHHHHHHHHHhcC---CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEE
Q 015895          167 TVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVI  240 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~f---G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a--DiV  240 (398)
                      +.||+|+|+|++..++.+ ...   ++.|+ ++||+..... .+.+       +.+..  ....+.|.|||++..  |+|
T Consensus         8 r~Gi~g~g~ia~~f~~al-~~~p~s~~~Ivava~~s~~~A~-~fAq-------~~~~~--~~k~y~syEeLakd~~vDvV   76 (351)
T KOG2741|consen    8 RWGIVGAGRIARDFVRAL-HTLPESNHQIVAVADPSLERAK-EFAQ-------RHNIP--NPKAYGSYEELAKDPEVDVV   76 (351)
T ss_pred             EEEEeehhHHHHHHHHHh-ccCcccCcEEEEEecccHHHHH-HHHH-------hcCCC--CCccccCHHHHhcCCCcCEE
Confidence            699999999999999987 433   56554 5677554322 2211       11211  112356899999776  999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcCCc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g~i  291 (398)
                      .+..|.... +.+.   .+..-+...+|+.---.-- -+.+.+++|.+...+
T Consensus        77 yi~~~~~qH-~evv---~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv  124 (351)
T KOG2741|consen   77 YISTPNPQH-YEVV---MLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGV  124 (351)
T ss_pred             EeCCCCccH-HHHH---HHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence            999885433 2221   1111223335544332222 223346676666553

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=89.23  E-value=16  Score=36.04  Aligned_cols=105  Identities=18%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             cCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|+++..+|=| +|+.++.... ..|||+|....|..-.-.+.+.+.-.......|   ..+....++++.++.||+|.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g---~~i~~t~d~~eAv~gADvvy  226 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKESG---GKITLTEDPEEAVKGADVVY  226 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC---CeEEEecCHHHHhCCCCEEE
Confidence            999999999986 5777777664 589999988776532211111111000011111   12334468999999999996


Q ss_pred             EccC--CChhhh-----------hhccHHHHhcCCCCcEEEEc
Q 015895          242 LHPV--LDKTTY-----------HLINKERLATMKKEAILVNC  271 (398)
Q Consensus       242 l~~P--lt~~T~-----------~li~~~~~~~mk~gailIN~  271 (398)
                      .-+.  ...+.+           --+|++.++..+++++|.-|
T Consensus       227 TDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         227 TDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             ecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            4332  212221           23578888888888888887

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=89.20  E-value=3  Score=40.94  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .|.+|.|.|.|.+|+.+++.+ +.+|.+|++.++...
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~  198 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSD  198 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChH
Confidence            567999999999999999985 899999999988653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.16  E-value=5.7  Score=41.01  Aligned_cols=114  Identities=19%  Similarity=0.200  Sum_probs=64.7

Q ss_pred             cCC-CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHhhcCCE
Q 015895          163 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLREADV  239 (398)
Q Consensus       163 l~g-ktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sl~ell~~aDi  239 (398)
                      +.+ +++.|||+|.+|.+.++.|.+.-| .+|.++|..........       ++. +   ..+... .+. +.+.++|+
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~-------l~~-g---~~~~~g~~~~-~~~~~~d~   71 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQ-------LPE-D---VELHSGGWNL-EWLLEADL   71 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHH-------hhc-C---CEEEeCCCCh-HHhccCCE
Confidence            445 789999999999999998854444 89999997543211110       111 1   111111 133 34578998


Q ss_pred             EEEcc--CC-Chhhh-------hhccH-HHH-hcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          240 ISLHP--VL-DKTTY-------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       240 V~l~~--Pl-t~~T~-------~li~~-~~~-~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |+...  |. +|+-.       .++.+ +.+ ..++...+-|-=+-|..--..=|...|+.
T Consensus        72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  132 (438)
T PRK04663         72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA  132 (438)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            87664  32 22211       12322 232 23444456666677887766667777764

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.08  E-value=1.2  Score=45.68  Aligned_cols=65  Identities=15%  Similarity=0.121  Sum_probs=50.2

Q ss_pred             cCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 015895          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (398)
Q Consensus       163 l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e  232 (398)
                      .+|++|+|+|+.          .-...+++.| ...|.+|.+|||...... .                .+.....++.+
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~-~----------------~~~~~~~~~~~  355 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS-F----------------FNSRLERDLAT  355 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh-h----------------cCCeeeCCHHH
Confidence            478999999993          5577899998 689999999999854321 0                12334578999


Q ss_pred             HhhcCCEEEEccC
Q 015895          233 VLREADVISLHPV  245 (398)
Q Consensus       233 ll~~aDiV~l~~P  245 (398)
                      .++.||.|++..-
T Consensus       356 ~~~~~~~~~~~~~  368 (388)
T PRK15057        356 FKQQADVIISNRM  368 (388)
T ss_pred             HHHhCCEEEEcCC
Confidence            9999999998764

>PRK07326 short chain dehydrogenase; Provisional

Probab=89.01  E-value=1.1  Score=41.36  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=32.5

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +.++++.|+|. |.||+.++++|+ ..|.+|++.++.+..
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~   42 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE   42 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence            56789999985 999999999984 679999999987643

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=89.01  E-value=2.2  Score=41.59  Aligned_cols=98  Identities=13%  Similarity=0.076  Sum_probs=57.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH--HH--hhcC
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREA  237 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~--el--l~~a  237 (398)
                      ..|.+|.|+|.|.+|+.+++.+ ++.|++ |++.+++.... +. ...       .+....-.....+..  ..  -...
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~-~~-~~~-------~g~~~~~~~~~~~~~~~~~~~~~~v  227 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKL-EL-AKK-------LGATETVDPSREDPEAQKEDNPYGF  227 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH-HH-HHH-------hCCeEEecCCCCCHHHHHHhcCCCC
Confidence            3567999999999999999985 899997 88887765432 11 111       111100000001111  11  1357


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      |+++-+++..     -...+.+..|+++..+|+++..+
T Consensus       228 d~v~~~~~~~-----~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         228 DVVIEATGVP-----KTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             cEEEECCCCh-----HHHHHHHHHHhcCCEEEEEecCC
Confidence            8888776521     12345577788888888887644

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.00  E-value=5.6  Score=41.12  Aligned_cols=117  Identities=19%  Similarity=0.195  Sum_probs=66.1

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-ccc-ccCCHHHHhhcCCEEEEcc
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWK-RASSMDEVLREADVISLHP  244 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~sl~ell~~aDiV~l~~  244 (398)
                      +|.|||+|..|.+.|+.| ...|.+|.++|....+......+    .+.+.+..-. +.. ....+.+.+.+.|.|+...
T Consensus         2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~   76 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP   76 (459)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence            589999999999999987 68999999999876443211000    1122221100 000 0011224678899988754


Q ss_pred             CCChhhhh----------hccHH-H-HhcCCC-CcEEEEcCCCchhcHHHHHHHHhc
Q 015895          245 VLDKTTYH----------LINKE-R-LATMKK-EAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       245 Plt~~T~~----------li~~~-~-~~~mk~-gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      ...++..-          ++.+- . ...+++ ..+-|--+.|..--..=|...|+.
T Consensus        77 gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~  133 (459)
T PRK02705         77 GIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA  133 (459)
T ss_pred             CCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            33332211          12222 2 233333 356666677887777766777765

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=88.95  E-value=3.1  Score=46.62  Aligned_cols=112  Identities=24%  Similarity=0.310  Sum_probs=68.1

Q ss_pred             CeEEEEecChhHHHH-HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~v-A~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      +++.|+|+|.+|.+. |+.| ...|++|.++|....+..+.        ++..+.   .+..-. ..+.+..+|+|+...
T Consensus         5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~gi---~~~~g~-~~~~~~~~d~vV~Sp   71 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKGA---RFFLGH-QEEHVPEDAVVVYSS   71 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCC-CHHHcCCCCEEEECC
Confidence            359999999999998 9987 79999999999765433222        222221   111111 235567899998764


Q ss_pred             CCChhhh----------hhccHH-HHhc-CCC-CcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          245 VLDKTTY----------HLINKE-RLAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       245 Plt~~T~----------~li~~~-~~~~-mk~-gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      .-.+++.          .++++- .+.. ++. ..+-|--+.|..--..=+...|+...
T Consensus        72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g  130 (809)
T PRK14573         72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK  130 (809)
T ss_pred             CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            3322222          123332 2233 332 35667767788877776777777643

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.87  E-value=1.6  Score=40.42  Aligned_cols=39  Identities=26%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ++.|+++.|+|. |.||+.+|+.+ ...|++|+..+++...
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~~   41 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQEK   41 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            378999999998 99999999998 5789999999987643

>PRK08265 short chain dehydrogenase; Provisional

Probab=88.83  E-value=3  Score=39.37  Aligned_cols=38  Identities=26%  Similarity=0.264  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .++||++.|.|. |.||+++|+.| ...|++|+..+++..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARAL-VAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            478999999997 99999999998 478999999998764

>PRK14851 hypothetical protein; Provisional

Probab=88.82  E-value=0.89  Score=49.85  Aligned_cols=37  Identities=22%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~  198 (398)
                      ..|++++|+|+|+|.+|+.+|+.|+ ..|. ++...|..
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~La-r~GVG~l~LvD~D   76 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMV-RTGIGRFHIADFD   76 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHH-HhCCCeEEEEcCC
Confidence            4589999999999999999999985 4554 67777644

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=88.59  E-value=3.3  Score=41.07  Aligned_cols=38  Identities=21%  Similarity=0.391  Sum_probs=29.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~  201 (398)
                      .|.+|.|+|.|.||...++.+++.+| .+|++.|++..+
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k  201 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEK  201 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhH
Confidence            47899999999999998876522354 689999987643

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK07904 short chain dehydrogenase; Provisional

Probab=88.54  E-value=1.9  Score=40.86  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChhh
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~f-G~~V~~~d~~~~~  201 (398)
                      +++++.|.|. |.||+++|+.++ .. |++|+..+++.+.
T Consensus         7 ~~~~vlItGas~giG~~la~~l~-~~gg~~V~~~~r~~~~   45 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYL-KNAPARVVLAALPDDP   45 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-hcCCCeEEEEeCCcch
Confidence            4678999986 899999999984 55 5899999887654

>PRK07825 short chain dehydrogenase; Provisional

Probab=88.53  E-value=2.4  Score=40.20  Aligned_cols=39  Identities=31%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ++.|+++.|.|. |.||+.+|+.| ...|++|+..+++...
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l-~~~G~~v~~~~r~~~~   41 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARAL-AALGARVAIGDLDEAL   41 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            467899999997 89999999998 4789999999887643

>PRK05717 oxidoreductase; Validated

Probab=88.49  E-value=3  Score=39.15  Aligned_cols=39  Identities=23%  Similarity=0.237  Sum_probs=33.6

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ..+.||++.|.|. |.||+.+|+.|+ ..|++|+..++...
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~-~~g~~v~~~~~~~~   45 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLI-AEGWQVVLADLDRE   45 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHH-HcCCEEEEEcCCHH
Confidence            3588999999996 899999999984 67999999987654

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=88.49  E-value=3.1  Score=40.85  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHH----HHhh-cC
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMD----EVLR-EA  237 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sl~----ell~-~a  237 (398)
                      .|++|.|.|.|.+|+.+++.+ +.+|++|++.+++.... + +...       .+....-.... .++.    .+.. ..
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~-~-~~~~-------~g~~~~i~~~~~~~~~~~~~~~~~~~~  234 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKL-E-LARE-------LGAVATVNASEVEDVAAAVRDLTGGGA  234 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHH-H-HHHH-------hCCCEEEccccchhHHHHHHHHhCCCC
Confidence            578999999999999999985 89999999987765432 1 1111       12111000000 1221    1221 47


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+++-++.. ..    .-...+..++++..+|+++.
T Consensus       235 d~vi~~~g~-~~----~~~~~~~~l~~~g~~i~~g~  265 (345)
T cd08260         235 HVSVDALGI-PE----TCRNSVASLRKRGRHVQVGL  265 (345)
T ss_pred             CEEEEcCCC-HH----HHHHHHHHhhcCCEEEEeCC
Confidence            777766542 11    12346777888888888765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK12828 short chain dehydrogenase; Provisional

Probab=88.47  E-value=4.8  Score=36.80  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+.||++.|.|- |.||+.+++.++ .-|++|+..+++..+
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~-~~G~~v~~~~r~~~~   43 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLA-ARGARVALIGRGAAP   43 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHH-HCCCeEEEEeCChHh
Confidence            478999999986 999999999984 669999999987654

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=88.43  E-value=4.3  Score=40.12  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=48.0

Q ss_pred             cCCCeEEEEe---cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       163 l~gktvGIIG---lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      +.|++|+|+|   .|+.-++.++.| ..||++|....|..=.-.+.+.+.    +...+   ..+......+|.++++|+
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~----l~~~~---~~~~~~~~~e~~i~~~DV  227 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEE----LEEKG---GVVVEHDSDEEVIEEADV  227 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHH----HhhcC---ceEEEecchhhhhccCCE
Confidence            9999999999   799999999998 799999999987531111111111    11111   112234456669999999


Q ss_pred             EE
Q 015895          240 IS  241 (398)
Q Consensus       240 V~  241 (398)
                      +.
T Consensus       228 l~  229 (316)
T COG0540         228 LY  229 (316)
T ss_pred             EE
Confidence            94

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=88.42  E-value=5.2  Score=41.39  Aligned_cols=126  Identities=17%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             CeEEEEecChhHHH-HHHHHHh---cCC-cEEEEEcCC-hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~---~fG-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ++|.|||.|..-.. +.+-+++   .++ -+|..||.. +.. ++. ...+...+......+..+....++++.+..|||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~r-l~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf   78 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEK-LEI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF   78 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHH-HHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence            47999999997432 3333322   344 689999998 443 211 111111122222223345556789999999999


Q ss_pred             EEEccCCCh-hh----------hhhc-------------------c---HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895          240 ISLHPVLDK-TT----------YHLI-------------------N---KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (398)
Q Consensus       240 V~l~~Plt~-~T----------~~li-------------------~---~~~~~~mk~gailIN~aRG~~vde~aL~~aL  286 (398)
                      |+++.-... +.          +|++                   -   .+.+....|++++||.+-.-=+-..++.+..
T Consensus        79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~  158 (419)
T cd05296          79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT  158 (419)
T ss_pred             EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence            987753222 11          1111                   0   1123334689999999987656666666655


Q ss_pred             hcCCccEE
Q 015895          287 KQNPMFRV  294 (398)
Q Consensus       287 ~~g~i~gA  294 (398)
                       ..++.|.
T Consensus       159 -~~rviGl  165 (419)
T cd05296         159 -GDRVIGL  165 (419)
T ss_pred             -cCCEEee
Confidence             4456565

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.29  E-value=2.9  Score=39.63  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      .+.||++.|.|-   +.||+++|+.|+ ..|++|+..++.
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la-~~G~~v~~~~r~   42 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLH-NAGAKLVFTYAG   42 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEecCc
Confidence            478999999997   589999999985 789999988764

>PLN03075 nicotianamine synthase; Provisional

Probab=88.27  E-value=1.9  Score=42.48  Aligned_cols=102  Identities=15%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCC-CccccccCCHHHH---hhcC
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQ-PVTWKRASSMDEV---LREA  237 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~sl~el---l~~a  237 (398)
                      ..++|..||.|..|-.-.-.++. .-+.+++++|.++......  ..   .+++ .+.. ...+.. .++.+.   +.+.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A--r~---~~~~~~gL~~rV~F~~-~Da~~~~~~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA--RR---LVSSDPDLSKRMFFHT-ADVMDVTESLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH--HH---HhhhccCccCCcEEEE-CchhhcccccCCc
Confidence            78999999999987755443322 2356899999988652111  00   0111 1111 122222 233222   4689


Q ss_pred             CEEEEcc--CCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          238 DVISLHP--VLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       238 DiV~l~~--Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      |+|++.+  ..+++.+.-+-+...+.|+||++++=-
T Consensus       197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr  232 (296)
T PLN03075        197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR  232 (296)
T ss_pred             CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence            9998773  113345555667888999999988864

>PLN02427 UDP-apiose/xylose synthase

Probab=88.26  E-value=0.88  Score=45.89  Aligned_cols=41  Identities=29%  Similarity=0.436  Sum_probs=34.1

Q ss_pred             cccccCCCeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChh
Q 015895          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA  200 (398)
Q Consensus       159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~f-G~~V~~~d~~~~  200 (398)
                      .|+.++.|+|.|.|. |-||+.++++|. .- |.+|+++|+...
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~-~~~g~~V~~l~r~~~   50 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLM-TETPHKVLALDVYND   50 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHH-hcCCCEEEEEecCch
Confidence            466788899999995 999999999984 55 589999997653

>PRK06197 short chain dehydrogenase; Provisional

Probab=88.09  E-value=2.9  Score=40.58  Aligned_cols=40  Identities=15%  Similarity=0.076  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .++.||++.|.|. |.||+.+|+.|+ ..|++|+..+++...
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~-~~G~~vi~~~r~~~~   52 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALA-AKGAHVVLAVRNLDK   52 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            4689999999996 999999999984 679999999887644

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=88.06  E-value=6.3  Score=40.38  Aligned_cols=117  Identities=17%  Similarity=0.113  Sum_probs=61.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-c-CC----cEEEEE--cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVE-G-FK----MNLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~-fG----~~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      .+|+|||. |++|..+|-.++. + ++    ..++.+  |...+.....-.+....... .. .  ......+-.+.+++
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~-~~-~--~v~i~~~~y~~~kd  120 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP-LL-R--EVSIGIDPYEVFED  120 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh-hc-C--ceEEecCCHHHhCC
Confidence            47999999 9999999987742 2 22    134444  66554322222221111100 00 0  11111233466899


Q ss_pred             CCEEEEccCC--Ch-hhhh-hc--cH----H---HHhc-CCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          237 ADVISLHPVL--DK-TTYH-LI--NK----E---RLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       237 aDiV~l~~Pl--t~-~T~~-li--~~----~---~~~~-mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      ||+|++..-.  .+ +||. ++  |.    +   .+.. .++.+++|.++  .++|.-+.+-.-.+
T Consensus       121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~~k~s  184 (387)
T TIGR01757       121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIAMKNA  184 (387)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence            9999987533  22 2321 11  11    1   2223 45889999887  56666665444333

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=87.98  E-value=2.5  Score=41.76  Aligned_cols=91  Identities=16%  Similarity=0.143  Sum_probs=55.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .|.+|.|.|.|.+|...++. ++.+|++|++.+++.... + +       +++.|.....    ...++.-...|+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~-~-~-------a~~~Ga~~vi----~~~~~~~~~~d~~i~~  230 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAAR-R-L-------ALALGAASAG----GAYDTPPEPLDAAILF  230 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHH-H-H-------HHHhCCceec----cccccCcccceEEEEC
Confidence            47899999999999988887 489999999988876542 1 1       1222321110    0001111245766665


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ... .+   . -...++.++++..++.++.
T Consensus       231 ~~~-~~---~-~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       231 APA-GG---L-VPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             CCc-HH---H-HHHHHHhhCCCcEEEEEec
Confidence            543 12   1 2456777888888877653

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK06841 short chain dehydrogenase; Provisional

Probab=87.98  E-value=3.2  Score=38.76  Aligned_cols=38  Identities=24%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ++.||++.|.|. |.||+.+|++| ...|++|+..++...
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l-~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELF-AAKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            588999999996 99999999998 478999999988754

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=87.98  E-value=4.5  Score=41.96  Aligned_cols=126  Identities=10%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             CeEEEEecChhHHH--HHHHHHh---cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          166 QTVGVIGAGRIGSA--YARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~--vA~~la~---~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ++|.|||-|.. ..  +.+-+.+   .+ +-+|..||..+... +. ...+...+......+..+....+.++.++.|||
T Consensus         1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl-~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADf   77 (425)
T cd05197           1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERL-DI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADF   77 (425)
T ss_pred             CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHH-HH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence            47999999985 32  2332221   34 36899999887432 11 112222222222223445566789999999999


Q ss_pred             EEEccCCCh-h----------hhhhccH----------------------HHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895          240 ISLHPVLDK-T----------TYHLINK----------------------ERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (398)
Q Consensus       240 V~l~~Plt~-~----------T~~li~~----------------------~~~~~mk~gailIN~aRG~~vde~aL~~aL  286 (398)
                      |+..+--.. +          -+|++..                      +.+....|++++||.+-.-=+-..++.+..
T Consensus        78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~  157 (425)
T cd05197          78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYV  157 (425)
T ss_pred             EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhC
Confidence            988764322 1          1122211                      123334689999999987666666776665


Q ss_pred             hcCCccEE
Q 015895          287 KQNPMFRV  294 (398)
Q Consensus       287 ~~g~i~gA  294 (398)
                      ...++.|.
T Consensus       158 p~~rviG~  165 (425)
T cd05197         158 PPEKAVGL  165 (425)
T ss_pred             CCCcEEEE
Confidence            33345443

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK08628 short chain dehydrogenase; Provisional

Probab=87.97  E-value=1.3  Score=41.50  Aligned_cols=40  Identities=20%  Similarity=0.139  Sum_probs=33.6

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ..+.|+++.|.|. |.||+.+|+.| ...|++|++.++..+.
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l-~~~G~~v~~~~r~~~~   43 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRL-AEEGAIPVIFGRSAPD   43 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHH-HHcCCcEEEEcCChhh
Confidence            3588999999995 78999999998 4789999988876643

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=87.96  E-value=1.4  Score=40.87  Aligned_cols=36  Identities=22%  Similarity=0.177  Sum_probs=29.7

Q ss_pred             ccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      .+.++++-|.| .|.||+.+|+++ ...|++|++..+.
T Consensus         3 ~~~~~~~lItG~s~~iG~~la~~l-~~~g~~v~~~~~~   39 (247)
T PRK12935          3 QLNGKVAIVTGGAKGIGKAITVAL-AQEGAKVVINYNS   39 (247)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEcCC
Confidence            36789999999 599999999998 4789999875443

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=87.95  E-value=2  Score=43.12  Aligned_cols=31  Identities=29%  Similarity=0.492  Sum_probs=23.0

Q ss_pred             eEEEEecChhHHHHHHHHHh-cC--CcEEEEEcC
Q 015895          167 TVGVIGAGRIGSAYARMMVE-GF--KMNLIYYDL  197 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~-~f--G~~V~~~d~  197 (398)
                      +|||.|+|+||+.+.|.|.. .|  ..++++.+.
T Consensus         3 ~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind   36 (336)
T PRK13535          3 RVAINGFGRIGRNVLRALYESGRRAEITVVAINE   36 (336)
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence            79999999999999998632 22  456665543

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=87.90  E-value=2.8  Score=42.04  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=24.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~  199 (398)
                      .+|||.|+|+||+.+.+.+...-++++.+. |+..
T Consensus         3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~   37 (334)
T PRK08955          3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDPAG   37 (334)
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            479999999999999998633335676544 4443

>PRK06196 oxidoreductase; Provisional

Probab=87.90  E-value=2.7  Score=41.03  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+.||++.|.|. |.||+++|+.| ...|++|++.+++...
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L-~~~G~~Vv~~~R~~~~   62 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRAL-AQAGAHVIVPARRPDV   62 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            578999999998 88999999998 4789999999987643

>PRK08862 short chain dehydrogenase; Provisional

Probab=87.86  E-value=2.3  Score=39.75  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +++||++.|.|.+. ||+++|+++ ...|++|+..+++...
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   41 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHF-ARLGATLILCDQDQSA   41 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            47899999999865 999999998 4789999999887643

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=87.78  E-value=1  Score=44.85  Aligned_cols=107  Identities=22%  Similarity=0.241  Sum_probs=59.4

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCC-------cEEEEEcCChhhH-HHH-HHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 015895          167 TVGVIGA-GRIGSAYARMMVEGFK-------MNLIYYDLYQATR-LEK-FVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (398)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~fG-------~~V~~~d~~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~  235 (398)
                      +|+|+|. |.+|+.+|..|. ..+       .++..+|+..... ... ..+     +.+.. ..........++.+.++
T Consensus         4 kV~I~GAaG~VG~~la~~L~-~~~~~~~~~~~el~L~D~~~~~~~~~g~~~D-----l~d~~~~~~~~~~~~~~~~~~l~   77 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIA-KGDVFGPDQPVILHLLDIPPALKALEGVVME-----LQDCAFPLLKSVVATTDPEEAFK   77 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHH-hCcccCCCCCcEEEEEEcCCccccccceeee-----hhhccccccCCceecCCHHHHhC
Confidence            6999999 999999999874 322       4899999854321 111 000     00000 00001111246778889


Q ss_pred             cCCEEEEccCCCh---hhh-hhc--cH-------HHHhcC-CCCcEEEEcCCCchhcHHH
Q 015895          236 EADVISLHPVLDK---TTY-HLI--NK-------ERLATM-KKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       236 ~aDiV~l~~Plt~---~T~-~li--~~-------~~~~~m-k~gailIN~aRG~~vde~a  281 (398)
                      .||+|+.+.-...   +++ .++  |.       ..+... ++++++|.++  .++|.-.
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  135 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA  135 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence            9999987654321   222 222  11       233344 5788898887  4555544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07062 short chain dehydrogenase; Provisional

Probab=87.76  E-value=3.3  Score=38.99  Aligned_cols=39  Identities=18%  Similarity=0.172  Sum_probs=34.0

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ..+.||++.|.|. |.||+++|+.+ ...|++|+..+++..
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l-~~~G~~V~~~~r~~~   43 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELL-LEAGASVAICGRDEE   43 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHH
Confidence            3588999999998 68999999998 578999999998764

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=87.75  E-value=3.9  Score=40.76  Aligned_cols=38  Identities=18%  Similarity=0.145  Sum_probs=32.1

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      -.|.+|.|.|. |.+|+..++.+ +.+|++|++.+++...
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlA-k~~G~~Vi~~~~~~~k  195 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLA-KLHGCYVVGSAGSSQK  195 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEcCCHHH
Confidence            35789999999 99999999985 8999999988876543

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=87.69  E-value=3.9  Score=38.87  Aligned_cols=103  Identities=14%  Similarity=0.191  Sum_probs=57.7

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCC-Ccc-c-ccc-
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQ-PVT-W-KRA-  227 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~-~~~-~-~~~-  227 (398)
                      +|.|||.|.+|.++++.|+ ..|. ++...|...-+.  + +++           .+.....+...... ... . ... 
T Consensus         1 kVlvvG~GGlG~eilk~La-~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLA-LMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            4899999999999999985 4454 677777653210  0 110           00000111111100 000 0 011 


Q ss_pred             --CC-HHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          228 --SS-MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       228 --~s-l~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                        .+ .++.+++.|+|+.++- +.+++..+++.....   +.-+|+.+..
T Consensus        80 ~~~~~~~~f~~~~DvVi~a~D-n~~aR~~ln~~c~~~---~iplI~~g~~  125 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALD-NIIARRYVNGMLIFL---IVPLIESGTE  125 (234)
T ss_pred             hhhhchHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc---CCCEEEEccc
Confidence              11 2467899999999886 467788888766654   3457777654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK09242 tropinone reductase; Provisional

Probab=87.65  E-value=3.5  Score=38.63  Aligned_cols=39  Identities=31%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .++||++.|.|. |.||+.+|+++ ...|++|+..++..+.
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l-~~~G~~v~~~~r~~~~   45 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREF-LGLGADVLIVARDADA   45 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999986 89999999998 5789999999887543

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=87.63  E-value=1.7  Score=43.76  Aligned_cols=91  Identities=15%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ...+|+|+|. |.+|+++.+.| ...++   ++.+.....+..  +       .....+ ....+.. .+. +.+.++|+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL-~~~~hP~~~l~~las~rsaG--k-------~~~~~~-~~~~v~~-~~~-~~~~~~D~   72 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVL-TDRDFPYSSLKMLASARSAG--K-------KVTFEG-RDYTVEE-LTE-DSFDGVDI   72 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHH-HhCCCCcceEEEEEccCCCC--C-------eeeecC-ceeEEEe-CCH-HHHcCCCE
Confidence            4468999997 99999999998 44332   443332221110  0       001111 1111111 123 44589999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      |++++|.. .+..+.- +   ..+.|+.+||.|
T Consensus        73 vf~a~p~~-~s~~~~~-~---~~~~g~~VIDlS  100 (344)
T PLN02383         73 ALFSAGGS-ISKKFGP-I---AVDKGAVVVDNS  100 (344)
T ss_pred             EEECCCcH-HHHHHHH-H---HHhCCCEEEECC
Confidence            99999953 3333322 1   124689999998

>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated

Probab=87.60  E-value=10  Score=38.40  Aligned_cols=151  Identities=13%  Similarity=0.113  Sum_probs=81.2

Q ss_pred             eCCCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCC-C-C---HHHHHHHh-cCCCcEEEecCCccccHHHHHHhh
Q 015895           10 WNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTI-L-S---VEDIIALI-GDKCDGVIGQLTEDWGETLFAALS   83 (398)
Q Consensus        10 ~~~~~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~---~eel~~~~-~~~~d~vi~~~~~~~~~~~l~~~~   83 (398)
                      ..|....||+||.+-......+.|++.|.++...+.-+.. . .   -++....+ ..++|.++..|..-+ +.+++.+.
T Consensus         6 ~~pL~g~rIlvtr~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv-~~~~~~l~   84 (381)
T PRK07239          6 SAPLAGFTVGVTAARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGF-RGWVEAAD   84 (381)
T ss_pred             CCCCCCcEEEEeccCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHH-HHHHHHHH
Confidence            4577788999997543344677888888887554211110 0 1   12222233 235899887765332 22333222


Q ss_pred             cc-----------CCceEEEeeccccccCchHhhhcCceEEecCCC-CCchHHHHHHHHHHHHhhchHHHHHHHHcCccC
Q 015895           84 RA-----------GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYD  151 (398)
Q Consensus        84 ~l-----------~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~-~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~  151 (398)
                      +.           +++++ ..|-+.    -+++.+.|+.+.-.|.. +++..++...                  .    
T Consensus        85 ~~~~~~~~~~~l~~~~i~-aVG~~T----a~aL~~~G~~~~~~p~~~~~e~L~~~l~------------------~----  137 (381)
T PRK07239         85 GWGLADELLEALSSARLL-ARGPKA----TGAIRAAGLREEWSPASESSAEVLEYLL------------------E----  137 (381)
T ss_pred             HcCChHHHHHHHcCCeEE-EECccH----HHHHHHcCCCCccCCCCCccHHHHHHHh------------------c----
Confidence            21           11332 233332    24567899987666543 3333333211                  0    


Q ss_pred             CCCCCcccccccCCCeEEEEecC-----hhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          152 GWLPNLFVGNLLKGQTVGVIGAG-----RIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       152 ~w~~~~~~g~~l~gktvGIIGlG-----~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                               ....|++|.|.-.|     .....+++.| +..|++|....-|
T Consensus       138 ---------~~~~g~~vli~~~~~~~~~~~~~~L~~~L-~~~G~~V~~~~vY  179 (381)
T PRK07239        138 ---------EGVAGKRIAVQLHGATDEWEPLPEFLEAL-RAAGAEVVPVPVY  179 (381)
T ss_pred             ---------CCCCCCEEEEEcCCCccccCchHHHHHHH-HHCCCEEEEeCcE
Confidence                     12567889887655     3334688887 6888876654433

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=87.52  E-value=4.2  Score=39.52  Aligned_cols=96  Identities=19%  Similarity=0.203  Sum_probs=58.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl-~ell~~aDiV~  241 (398)
                      -.|.+|.|.|.|.+|+.+++.+ +.+|.+|++.+++.... +. ..       ..+..........+. .......|+++
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~-~~-~~-------~~g~~~~~~~~~~~~~~~~~~~~d~vi  230 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKR-EL-AR-------KLGADEVVDSGAELDEQAAAGGADVIL  230 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HH-------HhCCcEEeccCCcchHHhccCCCCEEE
Confidence            3467899999999999988875 89999999998876542 11 11       111111000000011 11123578888


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      -++... .    ...+.+..++++..+|+++.
T Consensus       231 ~~~~~~-~----~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         231 VTVVSG-A----AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             ECCCcH-H----HHHHHHHhcccCCEEEEECC
Confidence            766421 1    23556788888889988864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=87.51  E-value=3.1  Score=39.13  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=32.6

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ++.||++.|.|. |.||+++|++|+ ..|++|+..++...
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~-~~G~~vv~~~~~~~   43 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLA-KAGADIVGVGVAEA   43 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCchH
Confidence            478999999996 899999999984 78999999887643

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=87.46  E-value=1.6  Score=46.37  Aligned_cols=171  Identities=12%  Similarity=0.080  Sum_probs=102.3

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ..+.||+..++|--. +|..+|..| +.....|..+-..                            -.++.|.+.++|+
T Consensus       158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHSK----------------------------T~~lae~v~~ADI  208 (935)
T KOG4230|consen  158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHSK----------------------------TRNLAEKVSRADI  208 (935)
T ss_pred             CccccceeEEEecccccCChHHHHH-HhcCceEEEecCC----------------------------CccHHHHhccCCE
Confidence            569999999999866 488899987 6778888765321                            2468888999999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP  319 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTP  319 (398)
                      |++++-.    .+++-.+   .+|||+++|||+---+-|..     -++|.  -..=||-.++--   ..    --.+||
T Consensus       209 vIvAiG~----PefVKgd---WiKpGavVIDvGINyvpD~~-----Kksg~--klvGDVdfe~Ak---ev----as~ITP  267 (935)
T KOG4230|consen  209 VIVAIGQ----PEFVKGD---WIKPGAVVIDVGINYVPDPS-----KKSGF--KLVGDVDFESAK---EV----ASFITP  267 (935)
T ss_pred             EEEEcCC----cceeecc---cccCCcEEEEccccccCCCC-----Ccccc--eEeeecchHhhh---hh----hhcccc
Confidence            9999864    2333222   36899999999875544422     12221  245577554421   11    126889


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCC-----CCCCCCcCCCCCCC---CCCCCCCCChHHHHHHHhhh
Q 015895          320 HIASASKWTREGMATLAALNVLGKIKGYP-----IWGNPNQVEPFLNE---NAQPPAASPSIVNSKALGKI  382 (398)
Q Consensus       320 Hia~~T~ea~~~~~~~~~~ni~~~l~g~~-----~~~~vn~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  382 (398)
                      -=||--.-+..-+-+-+.+...+++.+..     ..+.+ +++..++.   -.-...-++.=.||+.||..
T Consensus       268 VPGGVGPMTVAMLmqNtveaAKR~r~es~~~~~i~~~pl-~l~tpvpsdidisrsq~pk~i~~la~e~gi~  337 (935)
T KOG4230|consen  268 VPGGVGPMTVAMLMQNTVEAAKRQREESKKKRKIDLLPL-KLKTPVPSDIDISRSQEPKLIGQLAKELGIY  337 (935)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHhccccCcCCCCcc-ccCCCCCcccchhhccCcchHHHHHHHhchh
Confidence            87776555544444555555555554322     11222 11111111   11122336667889988864

>PLN02206 UDP-glucuronate decarboxylase

Probab=87.41  E-value=1.6  Score=45.36  Aligned_cols=41  Identities=27%  Similarity=0.250  Sum_probs=34.3

Q ss_pred             ccccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          158 FVGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       158 ~~g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      ..|..-++|+|.|.|- |-||+.+++.| ...|.+|++.|+..
T Consensus       112 ~~~~~~~~~kILVTGatGfIGs~Lv~~L-l~~G~~V~~ld~~~  153 (442)
T PLN02206        112 PLGLKRKGLRVVVTGGAGFVGSHLVDRL-MARGDSVIVVDNFF  153 (442)
T ss_pred             ccccccCCCEEEEECcccHHHHHHHHHH-HHCcCEEEEEeCCC
Confidence            4555667899999995 99999999998 57899999998653

>PLN02740 Alcohol dehydrogenase-like

Probab=87.38  E-value=3.9  Score=41.20  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA  200 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~  200 (398)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.|+...
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~a-k~~G~~~Vi~~~~~~~  234 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGA-RARGASKIIGVDINPE  234 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCCcEEEEcCChH
Confidence            3588999999999999999985 89999 6999888654

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=87.37  E-value=3.1  Score=41.85  Aligned_cols=97  Identities=9%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhh---hcC-CCCccccccCCHHHHhhcCCE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLK---ANG-EQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+|+|+| .|.+|+++++.|. .+ .+++.++..+.+..-..+.+.+ ....   ..+ .....+. ..+.++ +.++|+
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~-~~p~~el~~~~~s~~~~G~~~~~~~-~~~~~~~~~~~~~~~~v~-~~~~~~-~~~~Dv   79 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLA-NHPWFEVTALAASERSAGKTYGEAV-RWQLDGPIPEEVADMEVV-STDPEA-VDDVDI   79 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHH-cCCCceEEEEEcChhhcCCcccccc-cccccccccccccceEEE-eCCHHH-hcCCCE
Confidence            5899998 8999999999984 44 4588877433322110000000 0000   000 0011111 124444 478999


Q ss_pred             EEEccCCChhhhhhccHHHHhcC-CCCcEEEEcC
Q 015895          240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~m-k~gailIN~a  272 (398)
                      |+.++|.. .+..+.     ..+ +.|..+|+.+
T Consensus        80 Vf~a~p~~-~s~~~~-----~~~~~~G~~vIDls  107 (349)
T PRK08664         80 VFSALPSD-VAGEVE-----EEFAKAGKPVFSNA  107 (349)
T ss_pred             EEEeCChh-HHHHHH-----HHHHHCCCEEEECC
Confidence            99999953 222222     222 4577777765

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=87.32  E-value=2.8  Score=42.99  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=24.3

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cC-CcEEEEEcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GF-KMNLIYYDL  197 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~f-G~~V~~~d~  197 (398)
                      .+|||.|+|+||+.+.|.+.. .| ..+|++.+.
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd   94 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND   94 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence            489999999999999998642 22 457775543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	398
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		7e-40
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-37
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		3e-34
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-29
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		7e-28
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		1e-27
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		3e-27
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		1e-25
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-25
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-24
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		3e-24
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		5e-24
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		5e-24
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		9e-24
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		1e-23
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		2e-23
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		3e-23
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		4e-23
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		6e-23
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		6e-23
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		6e-23
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		8e-23
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		1e-22
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-22
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-22
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-22
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		2e-22
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		2e-22
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-22
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		4e-22
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		4e-22
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		1e-20
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		6e-19
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		7e-19
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-17
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-17
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		3e-17
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		4e-17
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		8e-17
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		4e-15
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		7e-15
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		1e-12
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		1e-12
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		4e-12
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		6e-11
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		7e-11
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		8e-11
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		9e-11
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		6e-10
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		6e-10
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		3e-08
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		5e-08
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		5e-08
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		6e-08
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		3e-07
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		5e-07

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  161 bits (407), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 172/318 (54%), Gaps = 25/318 (7%)
Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N
Sbjct: 18  MLEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVAN 73
Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD- 151
            AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +  
Sbjct: 74  YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133
Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY   +   +E+ + 
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNMRILYYSRTRKEEVERELN 192
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F                ++++LRE+D + L   L + TYHLIN+ERL  MKK AIL
Sbjct: 193 A--EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 328
           +N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA 296
Query: 329 REGMATLAALNVLGKIKG 346
           REGMA L A N++   +G
Sbjct: 297 REGMAELVAKNLIAFKRG 314

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 25/317 (7%)
Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93
           +E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N 
Sbjct: 19  LEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTXLSERIDKEVFENAPKL--RIVANY 74
Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 151
           AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 152 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
              W P  F+G  + G+T+G+IG GRIG A A+   +GF   ++YY   +   +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNXRILYYSRTRKEEVERELNA 193
Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
             +F                ++++LRE+D + L   L + TYHLIN+ERL   KK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329
           N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 330 EGMATLAALNVLGKIKG 346
           EG A L A N++   +G
Sbjct: 298 EGXAELVAKNLIAFKRG 314

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 179/333 (53%), Gaps = 34/333 (10%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +PG + ++ L E+   VE+   +   L   +++     + +G +G +      
Sbjct: 2   RVLVTRTLPG-KALDRLRERGLEVEV--HRGLFLPKAELL----KRVEGAVGLIPTVEDR 54
Query: 77  TLFAALSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
                + RA G K  +  +VG ++VD+ AA + GI V +TPGV                 
Sbjct: 55  IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+  +  F M ++Y+
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH 173
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
                               A   +P+ +    S++E+L+EADV+SLH  L   T+ L+N
Sbjct: 174 --------------------ARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLN 212
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMK 313
           +ERL  MK+ AIL+N +RG ++D  ALVE L+ + +F  GLDV + EP + PG  L  + 
Sbjct: 213 RERLFAMKRGAILLNTARGALVDTEALVEALRGH-LFGAGLDVTDPEP-LPPGHPLYALP 270
Query: 314 NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           NA++ PHI SA + TRE MA +A  N+L  ++G
Sbjct: 271 NAVITPHIGSAGRTTRERMAEVAVENLLAVLEG 303

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 21/260 (8%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +N+DV AA + GI V N P                   R+I  AD  MR 
Sbjct: 68  KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G+   W     +G  L+G+T+G+IG GRIG   A++      MN++ YD Y      K V
Sbjct: 128 GV---WAKKEAMGIELEGKTIGIIGFGRIGYQVAKI-ANALGMNILLYDPYPNEERAKEV 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              G+F+               ++ +L+E+DV+++H  L ++TYHLIN+ERL  MKK AI
Sbjct: 184 N--GKFV--------------DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASK 326
           L+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  N ++ PHI +++ 
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTV 287
Query: 327 WTREGMATLAALNVLGKIKG 346
             +E      A  V+  +KG
Sbjct: 288 EAQERAGVEVAEKVVKILKG 307

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 17/245 (6%)
Query: 86  GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFM 145
           G K  + ++VGY+++D  AA   GI V +TP V                 RR  EAD  +
Sbjct: 94  GLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXV 153
Query: 146 RAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205
           R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y++    TRL  
Sbjct: 154 RSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN---RTRLSH 209
Query: 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE 265
            +           E+   +    ++D +L  +D+  +           ++ +R+A + + 
Sbjct: 210 AL-----------EEGAIYH--DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256
Query: 266 AILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
           A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N  + PHI SA+
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSAT 316
Query: 326 KWTRE 330
             TR+
Sbjct: 317 HETRD 321

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 153/334 (45%), Gaps = 20/334 (5%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 10  KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 67
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S M+VG +++ ++   K GI VG TP V                 R
Sbjct: 68  RILDA-AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 126
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 127 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 185
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 186 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 230
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 231 DFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           +++PHI SA+  TR  M+ LAA N+L  ++G P+
Sbjct: 291 VILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 324

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 29/302 (9%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94
            D ++ I    +T  SV+ ++  + +KC   VI ++ E+              K  S  +
Sbjct: 29  DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYS 75
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G++++D++A    GI VGN P                   RR  E ++ +R   + GW 
Sbjct: 76  IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE 135
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++A+             
Sbjct: 136 PLELVGEKLDNKTLGIYGFGSIGQALAKR-AQGFDMDIDYFDTHRAS------------- 181
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
            ++ E         S+D +L  +   SL+      T +  NK  + ++ + AI+VN +RG
Sbjct: 182 -SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            ++D   +V  L+   +   G DVF  EP +  G  ++ N  + PHI SA+   RE MA 
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAH 300
Query: 335 LA 336
            A
Sbjct: 301 QA 302

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 149/333 (44%), Gaps = 20/333 (6%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 8   KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 65
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S  +VG +++ ++   K GI VG TP V                 R
Sbjct: 66  RILDA-AGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 124
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 125 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 183
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 184 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 228
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +     K+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 229 DFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288
Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYP 348
           +++PHI SA+  TR   + LAA N+L  ++G P
Sbjct: 289 VILPHIGSATHRTRNTXSLLAANNLLAGLRGEP 321

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 24/296 (8%)
Query: 54  DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG 113
           D +AL  +    V+G         L  AL +   +  S+ +VG + VD+    + G+ V 
Sbjct: 57  DFLALQAESIRAVVGNSNAGADAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVT 114
Query: 114 NTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           NTP V                 RRI E D+++R G +     +  +     G+ VG+IG 
Sbjct: 115 NTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK--FGDFKLTTKFSGKRVGIIGL 172
Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           GRIG A A    E F   + Y+     +R +K  T Y  +               S+ E+
Sbjct: 173 GRIGLAVAER-AEAFDCPISYF-----SRSKKPNTNYTYY--------------GSVVEL 212
Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
              +D++ +   L   T H+IN+E +  +  + +L+N  RGP +DE  LV  L +  +  
Sbjct: 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272
Query: 294 VGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
            GLDVFE EP +   L  ++N +++PH+ S +  TR+ MA L   N+     G P+
Sbjct: 273 AGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL 328

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 130/298 (43%), Gaps = 35/298 (11%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+ AG    S   VG +N+D++ A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                        R+    DE M A     W P   +G  ++ Q VGV+G G IG  + R
Sbjct: 107 IAEHAAIQAARVLRQDKRMDEKM-AKRDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMR 163
Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVISL
Sbjct: 164 IM-EGFGAKVIAYDIFKNPELEK----KGYYV-------------DSLDDLYKQADVISL 205
Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H        H+IN + +A MK   ++VNCSRG ++D  A++  L    +F   +D +EDE
Sbjct: 206 HVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE 265
Query: 303 -------------PYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
                        P  +   L +  N +V PH A  +      M   A  N L  I G
Sbjct: 266 VGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMVVKAFNNNLKLING 323

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 154/349 (44%), Gaps = 52/349 (14%)
Query: 20  STKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTED 73
           S  P P    + LL  +DC VE+      IL     +A     CD    Q      L E 
Sbjct: 1   SMHPRP---LVALLDGRDCTVEM-----PILKDLATVAF----CDAQSTQEIHEKVLNEA 48
Query: 74  WGETLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXX 125
            G  ++    L+R   + F  + V      GY+NVD+ AA + GIAV N P         
Sbjct: 49  VGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETAD 108
Query: 126 XXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYA 181
                     RR     + +R G     +  +         ++G+T+G+IG GR G A A
Sbjct: 109 STICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVA 168
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
            +  + F  ++I+YD Y               L+   E+ +  +R  ++ ++L ++D +S
Sbjct: 169 -VRAKAFGFSVIFYDPY---------------LQDGIERSLGVQRVYTLQDLLYQSDCVS 212
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E 
Sbjct: 213 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 272
Query: 302 EP--YMKPGLSEMKNAIVVPHIA----SASKWTREGMATLAALNVLGKI 344
           EP  + +  L +  N I  PH A     AS   RE  AT     + G+I
Sbjct: 273 EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRI 321

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 144/301 (47%), Gaps = 27/301 (8%)
Query: 51  SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGI 110
           S E++  +IG + DG+I   T      +     R   K  S  + GY+N+D+  A K GI
Sbjct: 32  SGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHSAGYDNIDLEEATKRGI 88
Query: 111 AVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQ 166
            V    G+                 R+I  AD+F+R G ++     ++ G      L G+
Sbjct: 89  YVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH-AKIWTGFKRIESLYGK 147
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
            VG++G G IG A AR ++  F + L Y+  ++   +EK + A                R
Sbjct: 148 KVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKVNVEKELKA----------------R 190
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
              +DE+L ++D++ L   L + TYH+IN+ER+  ++ +  LVN  RG ++DE A+ E +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAI 249
Query: 287 KQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWTREGMATLAALNVLGKIK 345
           KQ  +     DVFE EP  +  L + +   ++ PH A  +   +E +   A  N+L  ++
Sbjct: 250 KQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLR 309
Query: 346 G 346
           G
Sbjct: 310 G 310

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 150/344 (43%), Gaps = 45/344 (13%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG GR+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPY---------------LSDGIERALGLQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            + +  L +  N I  PH A  S+     M   AA  +   I G
Sbjct: 295 SFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITG 338

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  107 bits (268), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 137/306 (44%), Gaps = 23/306 (7%)
Query: 46  KKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAA 105
           +K  LS E++IA + D C+G+I +        +  A  +   +       G +NVD+ AA
Sbjct: 52  EKQNLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVGRAGTGVDNVDLEAA 108
Query: 106 NKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
            + GI V NTP                   R+I +A   M+ G    W    F+G  L G
Sbjct: 109 TRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWERKKFMGTELNG 165
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           +T+G++G GRIG   A  M + F M  I YD   +  +     ++G              
Sbjct: 166 KTLGILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASFG-------------V 208
Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
           +   ++E+    D I++H  L  +T  L+N    A  KK   +VNC+RG ++DE AL+  
Sbjct: 209 QQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRA 268
Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK 345
           L+        LDVF +EP     L + +N I  PH+ +++K  +       A+  +  +K
Sbjct: 269 LQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 328
Query: 346 GYPIWG 351
           G  + G
Sbjct: 329 GKSLTG 334

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 95  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 258
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 329
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 259 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 318
Query: 330 EGMATLAALNVLGKIKG 346
             M   AA  +   I G
Sbjct: 319 IEMREEAAREIRRAITG 335

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 203
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 204 --LSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 329
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 321
Query: 330 EGMATLAALNVLGKIKG 346
             M   AA  +   I G
Sbjct: 322 IEMREEAAREIRRAITG 338

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 37/299 (12%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+  G    S   VG +N+D+  A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
                        R+    DE  +   +D  W P   +G  ++ Q VGV+G G IG  + 
Sbjct: 107 IAEHAAIQAARILRQDKAMDE--KVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVFM 162
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           ++M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVIS
Sbjct: 163 QIM-EGFGAKVITYDIFRNPELEK----KGYYV-------------DSLDDLYKQADVIS 204
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E 
Sbjct: 205 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264
Query: 302 E-----------PYMKPGLSEM---KNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           E            +    L+++    N +V PH A  +      M   A  N L  ++G
Sbjct: 265 EVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVKAFDNNLELVEG 323

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 149/344 (43%), Gaps = 45/344 (13%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG  R+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPY---------------LSDGIERALGLQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            + +  L +  N I  PH A  S+     M   AA  +   I G
Sbjct: 295 SFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITG 338

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 129/272 (47%), Gaps = 35/272 (12%)
Query: 69  QLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
           QLTE+    +FAA +R    A    +VG N V++ AA K GI V N P            
Sbjct: 69  QLTEE----IFAAANRL--IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVI 122
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
                  RRI        AG   GW         ++G+T+G++G G IGS    +  E  
Sbjct: 123 GEIIMLMRRIFPRSVSAHAG---GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNL-AESL 178
Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M + YYD   + +L+     YG             K A+S+DE+L+ +DV+SLH    K
Sbjct: 179 GMTVRYYD--TSDKLQ-----YGNV-----------KPAASLDELLKTSDVVSLHVPSSK 220
Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP----- 303
           +T  LI + +L  MKK A L+N +RG  +D  AL + L++  +    +DVF  EP     
Sbjct: 221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGE 280
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            +  P L  ++N I+ PHI  +++  +E + T
Sbjct: 281 RFSTP-LQGLENVILTPHIGGSTEEAQERIGT 311

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 124/286 (43%), Gaps = 34/286 (11%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 67  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 125
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 126 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 173
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 174 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 219
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 220 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 279
Query: 321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 366
           + +++   ++   T  A +V   + G  +    N     +NE   P
Sbjct: 280 LGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 325

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 124/286 (43%), Gaps = 34/286 (11%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 68  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 126
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 127 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 174
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 175 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 220
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 221 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 280
Query: 321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 366
           + +++   ++   T  A +V   + G  +    N     +NE   P
Sbjct: 281 LGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 326

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 23/241 (9%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+  G    S   VG +N+D+  A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
                        R+    DE  +   +D  W P   +G  ++ Q VGV+G G IG  + 
Sbjct: 107 IAEHAAIQAARILRQDKAMDE--KVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVFM 162
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           ++M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVIS
Sbjct: 163 QIM-EGFGAKVITYDIFRNPELEK----KGYYV-------------DSLDDLYKQADVIS 204
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E 
Sbjct: 205 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264
Query: 302 E 302
           E
Sbjct: 265 E 265

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 78  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH--------------AAKALD 181
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 182 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 300
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 301 VRLEIERCAAQNILQALAG 319

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 125/295 (42%), Gaps = 38/295 (12%)
Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
           E ++  LS  G K      VG+N ++ +   KY + V N P                   
Sbjct: 60  EVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLL 119
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           R+I E    M       W  NL + N +   TVG+IG G IGSA A +        +I Y
Sbjct: 120 RKIGEFRYRMDHDHDFTWPSNL-ISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAY 177
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           D+      E F+T Y  F                 D VL+EAD++SLH  L  +T ++I 
Sbjct: 178 DVAYNPEFEPFLT-YTDF-----------------DTVLKEADIVSLHTPLFPSTENMIG 219
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------------- 302
           +++L  MKK A L+NC+RG ++D  AL++ L+   +   GLD    E             
Sbjct: 220 EKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSE 279
Query: 303 -PYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
            P     L++M N ++ PH A  ++ +   M  +   + L   KG    G P  +
Sbjct: 280 IPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQLTIAKG----GRPRSI 330

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 114/252 (45%), Gaps = 21/252 (8%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           VG + VD+  A +  I V  TPGV                 RR+ + D  +R G +    
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
             L +G+  KG+ +GV+G G+IG A A    E F  ++ Y++           T  G   
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGXSVRYWNRS---------TLSG--- 207
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                  V W    S  ++ R++DV+++       T ++++   L  +  E I+VN +RG
Sbjct: 208 -------VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            V+DE AL+E LK   +   GLDVF +EP ++       N ++ PH  SA+  TR     
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGK 320
Query: 335 LAALNVLGKIKG 346
           L   N+     G
Sbjct: 321 LVLANLAAHFAG 332

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 37/288 (12%)
Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
           DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI + N P       
Sbjct: 46  DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105
Query: 124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
                       R + +    ++AG Y+      F+G  L  QTVGV+G G IG   A  
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEK--AGTFIGKELGQQTVGVMGTGHIGQV-AIK 162
Query: 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243
           + +GF   +I YD Y                   G+ P       S++++ +++DVI LH
Sbjct: 163 LFKGFGAKVIAYDPY----------------PMKGDHPDF--DYVSLEDLFKQSDVIDLH 204
Query: 244 -PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
            P +++ T H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +E E
Sbjct: 205 VPGIEQNT-HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 263
Query: 303 -----------PYMKPGLSE---MKNAIVVPHIASASKWTREGMATLA 336
                       +  P   E   M N ++ PHIA  ++     M   +
Sbjct: 264 TEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFS 311

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 113/251 (45%), Gaps = 36/251 (14%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K     +VG++++D++   K GI V + P                   +R+   ++  R 
Sbjct: 66  KLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RV 123
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
              +    +  +   L   T+GVIG GRIGS  A   +  F   ++ YD+ +   L++  
Sbjct: 124 KKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKG 182
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
             Y                 +S+DE+L+E+DVISLH    K T+H IN+ER++  K    
Sbjct: 183 CVY-----------------TSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVY 225
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------KPGLSEMK------ 313
           L+N +RG V+D  AL    ++     +GLDVFEDE  +        K     +K      
Sbjct: 226 LINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELAC 285
Query: 314 --NAIVVPHIA 322
             N I+ PHIA
Sbjct: 286 KDNVIITPHIA 296

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 295 GSTQEAQENI----GLEVAGKLIKYSDNGS 320

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 295 GSTQEAQENI----GLEVAGKLIKYSDNGS 320

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 155 PNLFVGNLLKGQTVGVIGAGRIG---SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
           PN  +G +LKGQT+G+ G G+IG   + Y R     F MN++ +    +           
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR----AFGMNVLVWGRENSK---------- 195
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
           +  +A+G     +  A S D +  ++DV+S+H  L+  T  +I    L  MK  A+ VN 
Sbjct: 196 ERARADG-----FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTRE 330
           SR  +++E  +V  L +       +DVFE EP ++   L  M+N I  PHI    + + E
Sbjct: 251 SRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYE 310
Query: 331 GMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSK 377
               +A  N+L  ++     GN + V       A P A +P+++ ++
Sbjct: 311 MYFGIAFQNILDILQ-----GNVDSV-------ANPTALAPALIRAE 345

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   +G +N+D   A K  I V   PG                  R++  +    ++
Sbjct: 70  KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G++         G  L G+T+G++G GRIG+    ++     M ++ YD+       + +
Sbjct: 130 GIFKK-----IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKI 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A                +A S++E+L+ +DVISLH  + K    +I+  +   MK   I
Sbjct: 184 NA----------------KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASA 324
           +VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV  HI + 
Sbjct: 228 IVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQ 287
Query: 325 SKWTREGMATLAALNVLGKIK 345
           +K  ++ +A +   N+L  +K
Sbjct: 288 TKEAQKRVAEMTTQNLLNAMK 308

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 77  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 136
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 137 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 187
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 188 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 234
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 235 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 293
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 294 GSTQEAQENI----GLEVAGKLIKYSDNGS 319

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 72  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 131
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           + +      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 132 VGNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 182
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 183 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 229
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 230 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 288
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 289 GSTQEAQENI----GLEVAGKLIKYSDNGS 314

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 114/270 (42%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 294
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 295 GSTQEAQENI----GLEVAGKLIKYSDNGS 320

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 229 SMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
           S++ +L EADVISLH  L++     T HL+++ RLA ++    LVN SRG V+D  AL  
Sbjct: 160 SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRR 219
Query: 285 HLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
            L+      V LDV+E EP   P L+  +  I  PHIA  S
Sbjct: 220 LLEGGADLEVALDVWEGEPQADPELA-ARCLIATPHIAGYS 259

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+ +T+G++G G +GS   +  +E   +  +  D  +A R ++     G F      
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRL-QTRLEALGIRTLLCDPPRAARGDE-----GDF------ 161
Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGP 275
                    ++DE+++EADV++ H  L K     T HL ++  +  +K  AIL+N  RGP
Sbjct: 162 --------RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 333
           V+D  AL+  L       V LDV+E EP +   L E  + I   HIA    +T EG A
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIAG---YTLEGKA 267

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++  TVGV+G GRIG   A++   G    +I  D+++   +E + T              
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCTQV------------ 190
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
                 S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A+
Sbjct: 191 ------SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAV 244
Query: 283 VEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKW 327
           +E ++   +   G DV + E               P  +  +      ++ PH+ S +  
Sbjct: 245 IEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDE 304
Query: 328 TREGMATLAALNV 340
             + M  ++  N+
Sbjct: 305 AVKNMVEVSYQNL 317

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 168 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 214
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 215 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 272 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 208
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 209 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 266 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 267
Query: 283 VEHLKQNPMFRVGLDVFEDEP 303
              L+   +   G DV+  +P
Sbjct: 268 AAALESGQLRGYGGDVWFPQP 288

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 209 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 268
Query: 283 VEHLKQNPMFRVGLDVFEDEP 303
              L+   +   G DV+  +P
Sbjct: 269 AAALESGQLRGYGGDVWFPQP 289

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 109/261 (41%), Gaps = 27/261 (10%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 122 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 179 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 231
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 232 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF--EDEPYMKPGLSEMKNAIVVPHIA--SASKWT 328
           RG + D  A+V  L+   +     DV+  +  P   P  +   N +  PHI+  S S  T
Sbjct: 284 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGM-TPHISGTSLSAQT 342
Query: 329 REGMATLAALNVLGKIKGYPI 349
           R    T   L      +G PI
Sbjct: 343 RYAAGTREILECY--FEGRPI 361

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 109/261 (41%), Gaps = 27/261 (10%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 123 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 180 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 232
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 233 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF--EDEPYMKPGLSEMKNAIVVPHIA--SASKWT 328
           RG + D  A+V  L+   +     DV+  +  P   P  +   N +  PHI+  S S  T
Sbjct: 285 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGM-TPHISGTSLSAQT 343
Query: 329 REGMATLAALNVLGKIKGYPI 349
           R    T   L      +G PI
Sbjct: 344 RYAAGTREILECY--FEGRPI 362

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 136 RRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
           +RI++  E  + G Y  D  +P      L++G+ V V+G G IG                
Sbjct: 99  KRIIQYGEKXKRGDYGRDVEIP------LIQGEKVAVLGLGEIG---------------- 136
Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISLHPVLDKTTY 251
                  TR+ K + A G  ++     P    W+  +S++E LREA        L+K T 
Sbjct: 137 -------TRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTR 189
Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
            L+  + LA   ++A+ VN  R  V+D   ++  LK+ P F    DV+
Sbjct: 190 GLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 122 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 229
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 230 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 337

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY- 304
           L  TT+HL + E     K++ +L+N  RGP +D  AL+  L  + +    LDV E EP  
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLP 260
Query: 305 MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK 345
               L +  + ++ PHI+      R  +  + A N    +K
Sbjct: 261 TDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVK 301

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           LKG+T+ ++G G IG   A    + F M ++       +R  +    + Q  +       
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTG-KHFGMKVL-----GVSRSGRERAGFDQVYQL------ 185
Query: 223 TWKRASSMDEVLREADVI-SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
                 +++++L +ADVI S+ P   + T+HL    R    K  AIL N  RG  I+E  
Sbjct: 186 -----PALNKMLAQADVIVSVLPA-TRETHHLFTASRFEHCKPGAILFNVGRGNAINEGD 239
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM---KNAIVVPHIASASKWTREGMATLAAL 338
           L+  L+   +    LDVFE EP   P  S +    N I+ PH ++ S    + +A +   
Sbjct: 240 LLTALRTGKLGMAVLDVFEQEPL--PADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVR 295
Query: 339 NVLGKIKGYPIWG 351
           N +  I G P+ G
Sbjct: 296 NYIRFIDGQPLDG 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-111
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-111
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-107
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-107
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-105
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-103
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-100
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-95
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	1e-95
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-93
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	9e-88
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	1e-87
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	8e-85
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	4e-83
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	9e-83
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	8e-82
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	5e-80
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	3e-79
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	2e-77
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	6e-77
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	2e-75
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	2e-72
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-72
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	5e-71
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	6e-68
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	4e-65
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	4e-65
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	4e-63
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	1e-60
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	4e-58
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	6e-32
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	7e-30
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  327 bits (842), Expect = e-111
 Identities = 88/342 (25%), Positives = 156/342 (45%), Gaps = 23/342 (6%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLPEA-AMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P  +T  TAE+A  L L +
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGS 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG A A+   +GF M++ Y
Sbjct: 116 ARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDY 174

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +D ++                ++ E         S+D +L  +   SL+      T +  
Sbjct: 175 FDTHR--------------ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 220

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DVF  EP +  G  ++ N
Sbjct: 221 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN 280

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             + PHI SA+   RE MA  A   +     G  +      +
Sbjct: 281 TFLFPHIGSAATQAREDMAHQANDLIDALFGGADM---SYAL 319

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  327 bits (842), Expect = e-111
 Identities = 128/356 (35%), Positives = 196/356 (55%), Gaps = 30/356 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E +  VE+    +  +  E ++  + +  D ++  L+E  
Sbjct: 2   KPKVFITREIP-EVGIKML-EDEFEVEVW-GDEKEIPREILLKKVKE-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +F    +   +  +N AVGY+N+D+  A K GI V NTP VLT+ TA+LA +L LA 
Sbjct: 58  DKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115

Query: 135 ARRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           AR +V+ D F+R+G        W P  F+G  + G+T+G+IG GRIG A A+   +GF M
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +   +E+ + A                    ++++LRE+D + L   L + T
Sbjct: 175 RILYYSRTRKEEVERELNA----------------EFKPLEDLLRESDFVVLAVPLTRET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YHLIN+ERL  MKK AIL+N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 366
           ++ N ++ PHI SAS   REGMA L A N++   +G      P  V   + +  +P
Sbjct: 279 KLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIP---PTLVNREVIKIRKP 331

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  318 bits (817), Expect = e-107
 Identities = 105/347 (30%), Positives = 162/347 (46%), Gaps = 25/347 (7%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
           P    +V  T+ +P       L    DC VE        +  +++   +     G++  L
Sbjct: 5   PVRLMKVFVTRRIP-AEGRVALARAADCEVEQ-WDSDEPIPAKELERGVAG-AHGLLCLL 61

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
           ++   + +  A   A  K  S M+VG +++ ++   K GI VG TP VLT+TTAELA SL
Sbjct: 62  SDHVDKRILDAAG-ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSL 120

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            L   RR+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR +   F +
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PFGV 179

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
               Y         +    +             +    S  E+  ++D I +   L   T
Sbjct: 180 QRFLYT--GRQPRPEEAAEFQ----------AEFV---STPELAAQSDFIVVACSLTPAT 224

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGL 309
             L NK+    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP      L
Sbjct: 225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPL 284

Query: 310 SEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             +KN +++PHI SA+  TR  M+ LAA N+L  ++G P+   P+++
Sbjct: 285 LTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM---PSEL 328

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  318 bits (817), Expect = e-107
 Identities = 90/342 (26%), Positives = 157/342 (45%), Gaps = 25/342 (7%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             +    +       I   + Q   +E+   + T+L+   I +      + +    TE  
Sbjct: 28  IQKAFLCRRFTPA--IEAELRQRFDLEV-NLEDTVLTPSGIASRAHG-AEVLFVTATEAI 83

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +   L   G K  + ++VGY+++D+ AA   GI V +TP VL++  AE+A  L L A
Sbjct: 84  TAEVIRKLQ-PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNA 142

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RR  EAD  +R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y
Sbjct: 143 CRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHY 201

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++  + +   +    Y                  ++D +L  +D+  +           +
Sbjct: 202 HNRTRLSHALEEGAIY----------------HDTLDSLLGASDIFLIAAPGRPELKGFL 245

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           + +R+A + + A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N
Sbjct: 246 DHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDN 305

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             + PHI SA+  TR+ M  L    +    +        N +
Sbjct: 306 IFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVP---DNLI 344

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  312 bits (802), Expect = e-105
 Identities = 120/341 (35%), Positives = 183/341 (53%), Gaps = 33/341 (9%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +P  + ++ L E+    E+   +   L   +++  +     G+I  + +    
Sbjct: 2   RVLVTRTLP-GKALDRLRERGL--EVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDA 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
            +         K  +  +VG ++VD+ AA + GI V +TPGVLTE TA+L  +L LA AR
Sbjct: 58  EVMDRAKGL--KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+     F M ++Y+ 
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                R  K               P  +    S++E+L+EADV+SLH  L   T+ L+N+
Sbjct: 175 -----RTPK-------------PLPYPFL---SLEELLKEADVVSLHTPLTPETHRLLNR 213

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNA 315
           ERL  MK+ AIL+N +RG ++D  ALVE L+   +F  GLDV + EP      L  + NA
Sbjct: 214 ERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272

Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
           ++ PHI SA + TRE MA +A  N+L  ++G      PN V
Sbjct: 273 VITPHIGSAGRTTRERMAEVAVENLLAVLEGREP---PNPV 310

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  307 bits (788), Expect = e-103
 Identities = 97/350 (27%), Positives = 152/350 (43%), Gaps = 34/350 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             ++V T  +     + LL    C +    Q  + L+ E+I+    D    ++  + +  
Sbjct: 2   LPKLVITHRVHE-EILQLL-APHCELITN-QTDSTLTREEILRRCRD-AQAMMAFMPDRV 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
                 A      +       G++N DV+A    G+ +   P +LT  TAELA  L++  
Sbjct: 58  DADFLQACPEL--RVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            R +  AD F+R+G + GW P  F G  L   TVG +G G IG A A  +  G+   L Y
Sbjct: 116 GRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQY 173

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++                 L    EQ +  ++  +  E+   +D I L   L+  T HL+
Sbjct: 174 HEAKA--------------LDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV 218

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-------- 306
           N E LA ++  A+LVN  RG V+DE A++  L++  +     DVFE E + +        
Sbjct: 219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQID 278

Query: 307 PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
           P L    N +  PHI SA +  R  +   AA N+L  + G       N V
Sbjct: 279 PALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERP---INAV 325

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  299 bits (769), Expect = e-100
 Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 25/323 (7%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGG 87
            +Q   V            + +        + +I      G  +  W   L + L  +  
Sbjct: 23  FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP-SSL 81

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G     T++LA  L L+  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141

Query: 148 GLYDGWLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +           +  +G  +G +G G I    AR  V G  M L+YYD+      
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP---- 197

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 198 ----------ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307

Query: 324 ASKWTREGMATLAALNVLGKIKG 346
            +  T      L   N+   +  
Sbjct: 308 VAIETFHEFERLTMTNIDRFLLQ 330

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  288 bits (740), Expect = 1e-95
 Identities = 91/346 (26%), Positives = 148/346 (42%), Gaps = 32/346 (9%)

Query: 11  NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
             N K  ++  +PM    ++   ++++  V    Q         + A +      V    
Sbjct: 26  FRNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQA---ADRPALEAALPS-IRAVATGG 79

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
                      L        +   VG + VD+  A +  I V  TPGVL +  A+L  +L
Sbjct: 80  GAGLSNEWMEKLPSL--GIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIAL 137

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            LA  RR+ + D  +R G +      L +G+  KG+ +GV+G G+IG A A    E F M
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAG-EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGM 195

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           ++ Y++     R                   V W    S  ++ R++DV+++       T
Sbjct: 196 SVRYWN-----RSTL--------------SGVDWIAHQSPVDLARDSDVLAVCVAASAAT 236

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
            ++++   L  +  E I+VN +RG V+DE AL+E LK   +   GLDVF +EP ++    
Sbjct: 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFH 296

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
              N +++PH  SA+  TR  M  L   N+     G      PN V
Sbjct: 297 TTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKA---PNTV 339

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  288 bits (739), Expect = 1e-95
 Identities = 97/346 (28%), Positives = 156/346 (45%), Gaps = 34/346 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V     M     +  L ++   VEI        S E++  +IG   DG+I   T   
Sbjct: 2   RPKVGVLLKMKRE-ALEEL-KKYADVEIILY----PSGEELKGVIGR-FDGIIVSPTTKI 54

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +     R   K  S  + GY+N+D+  A K GI V    G+L+E  AE    L +  
Sbjct: 55  TREVLENAERL--KVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112

Query: 135 ARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
            R+I  AD+F+R G ++              L G+ VG++G G IG A AR +   F + 
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVK 171

Query: 192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251
           L Y+  ++   +EK + A                R   +DE+L ++D++ L   L + TY
Sbjct: 172 LYYWSRHRKVNVEKELKA----------------RYMDIDELLEKSDIVILALPLTRDTY 215

Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL-S 310
           H+IN+ER+  ++    LVN  RG ++DE A+ E +KQ  +     DVFE EP  +  L  
Sbjct: 216 HIINEERVKKLEG-KYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFK 274

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
                ++ PH A  +   +E +   A  N+L  ++G       + V
Sbjct: 275 YEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVP---EDLV 317

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  283 bits (726), Expect = 1e-93
 Identities = 95/342 (27%), Positives = 157/342 (45%), Gaps = 32/342 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
              V+   PM    ++   +++  ++    +  T  +  D +AL  +    V+G      
Sbjct: 23  AIGVLMMCPMST--YLEQELDKRFKL---FRYWTQPAQRDFLALQAESIRAVVGNSNAGA 77

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L  AL +   +  S+ +VG + VD+    + G+ V NTP VLT+  A+LA  L LA 
Sbjct: 78  DAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RRI E D+++R G +     +  +     G+ VG+IG GRIG A A    E F   + Y
Sbjct: 136 LRRICECDKYVRRGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISY 192

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +      R +K                  +    S+ E+   +D++ +   L   T H+I
Sbjct: 193 FS-----RSKK--------------PNTNYTYYGSVVELASNSDILVVACPLTPETTHII 233

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N+E +  +  + +L+N  RGP +DE  LV  L +  +   GLDVFE EP +   L  ++N
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLEN 293

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
            +++PH+ S +  TR+ MA L   N+     G P+      V
Sbjct: 294 VVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL---LTPV 332

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  267 bits (684), Expect = 9e-88
 Identities = 64/310 (20%), Positives = 111/310 (35%), Gaps = 35/310 (11%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           +    + G     V   L         A + R   K    +  G +++   +     + V
Sbjct: 19  KYFKIVRGGDLGNVEAALVSRITAEELAKMPRL--KFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
               G   +  AE A +L LA  +RI++  E M+ G Y   +       L++G+ V V+G
Sbjct: 76  AGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE----IPLIQGEKVAVLG 131

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG+   +++       +  +                            W+  +S++E
Sbjct: 132 LGEIGTRVGKIL-AALGAQVRGFSRTPK--------------------EGPWRFTNSLEE 170

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
            LREA        L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F
Sbjct: 171 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 230

Query: 293 RVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTR--EGMATLAALNVLGKIKGYP 348
               DV+              + N +  P +A      R    M   A  N++    G  
Sbjct: 231 IFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGR 290

Query: 349 IWGNPNQVEP 358
                N  + 
Sbjct: 291 P---RNIAKR 297

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  268 bits (688), Expect = 1e-87
 Identities = 88/351 (25%), Positives = 145/351 (41%), Gaps = 29/351 (8%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
            +    V        T  + +L +    V  C       S ++I   + ++  G +   T
Sbjct: 18  GSHMPLVALLDGRDCTVEMPIL-KDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHT 72

Query: 72  EDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS 131
                           +    +  G++N+D+ +A   GIAV N P    E TA+      
Sbjct: 73  ITLTREDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHI 130

Query: 132 LAAARRIVEADEFMRAGL----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187
           L   RR     + +R G      +           ++G+T+G+IG GR+G A A    + 
Sbjct: 131 LNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KA 189

Query: 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247
           F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH  L+
Sbjct: 190 FGFNVLFYDPY---------------LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLN 234

Query: 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP 307
           +  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP+   
Sbjct: 235 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 294

Query: 308 G--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
              L +  N I  PH A  S+     M   AA  +   I G       N V
Sbjct: 295 QGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCV 345

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  259 bits (665), Expect = 8e-85
 Identities = 105/333 (31%), Positives = 169/333 (50%), Gaps = 29/333 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V+   P+   + I +L +    V      +     + ++ L+ D  + +I +     
Sbjct: 3   RMKVLVAAPLH-EKAIQVLKDAGLEVIY----EEYPDEDRLVELVKD-VEAIIVRSKPKV 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +  +  +   K  +   VG +N+DV AA + GI V N P   + + AELA  L  + 
Sbjct: 57  TRRVIESAPKL--KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSV 114

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           AR+I  AD  MR G    W     +G  L+G+T+G+IG GRIG   A++      MN++ 
Sbjct: 115 ARKIAFADRKMREG---VWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILL 170

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y     E+                  +     ++ +L+E+DV+++H  L ++TYHLI
Sbjct: 171 YDPYPN---EERAKEVN----------GKFV---DLETLLKESDVVTIHVPLVESTYHLI 214

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMK 313
           N+ERL  MKK AIL+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  
Sbjct: 215 NEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFD 274

Query: 314 NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           N ++ PHI +++   +E      A  V+  +KG
Sbjct: 275 NVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  257 bits (659), Expect = 9e-83
 Identities = 70/330 (21%), Positives = 127/330 (38%), Gaps = 26/330 (7%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG-- 87
           +   +E +    + T  K           + D  D VI Q    W   L           
Sbjct: 59  LRKYLESNGHTLVVTSDKD-GPDSVFERELVD-ADVVISQPF--WPAYLTPERIAKAKNL 114

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +G ++VD+ +A    + V       + + AE    + L+  R  + + E+ R 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARK 174

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G ++     +     L+   VG + AGRIG A  R +   F ++L Y D ++        
Sbjct: 175 GGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR-------- 224

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                 L  + E+ +     ++ +++    DV++L+  L   T H+IN E L   K+ A 
Sbjct: 225 ------LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY 278

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326
           +VN +RG + D  A+   L+   +     DV+  +P  K      M    + PHI+  + 
Sbjct: 279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL 338

Query: 327 WTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             +   A      +    +G PI    ++ 
Sbjct: 339 TAQARYAAGTREILECFFEGRPI---RDEY 365

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  252 bits (647), Expect = 8e-82
 Identities = 85/319 (26%), Positives = 133/319 (41%), Gaps = 39/319 (12%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
            + +AL     DGV+     D+      AL+  G    S   VG +N+D+  A + G  +
Sbjct: 38  PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQI 96

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE AA  +    R+    DE +             +G  ++ Q VGV+G
Sbjct: 97  TNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVG 153

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG  + ++M EGF   +I YD+++   LEK                       S+D+
Sbjct: 154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV-----------------DSLDD 195

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + ++ADVISLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASKWTREGMATLAAL 338
              +DV+E E  +                 L    N +V P  A  +      M   A  
Sbjct: 256 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFD 315

Query: 339 NVLGKIKGYPIWGNPNQVE 357
           N L  ++G         V+
Sbjct: 316 NNLELVEGKE---AETPVK 331

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  248 bits (635), Expect = 5e-80
 Identities = 66/326 (20%), Positives = 127/326 (38%), Gaps = 40/326 (12%)

Query: 47  KTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106
              L+ ++   +     D VI +      +       + G K       G +++D   A 
Sbjct: 31  PDYLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAK 89

Query: 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 166
           + G  +   P       AELA + ++   R             +   +        ++  
Sbjct: 90  ELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--VDAFMFSKEVRNC 147

Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           TVGV+G GRIG   A++   G    +I  D+++   +E + T                  
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---------------- 189

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
             S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A++E +
Sbjct: 190 -VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248

Query: 287 KQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKWTREG 331
           +   +   G DV + E               P  +  +      ++ PH+ S +    + 
Sbjct: 249 ESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKN 308

Query: 332 MATLAALNVLGKIKGYPIWGNPNQVE 357
           M  ++  N+    +       PN+++
Sbjct: 309 MVEVSYQNLKDLAETGDC---PNKIK 331

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  244 bits (626), Expect = 3e-79
 Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 31/312 (9%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGY 97
           +++         V +I   + D  D        D    +       G   K    ++ G 
Sbjct: 1   LDVYVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGV 60

Query: 98  NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157
           +++DVN   +  +   N     + + AE A +L LA A+ I+E +E M+AG++       
Sbjct: 61  DHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--- 116

Query: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN 217
               LL G+ +G++G G IG   A +  + F M +I Y                   +  
Sbjct: 117 --TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVD-------------QNV 160

Query: 218 GEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277
                      S  ++ R++D + +   L   T  ++N   LA  +K   +VN +R  V+
Sbjct: 161 DVISE------SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVV 214

Query: 278 DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI-ASASKWTREGMATLA 336
            +  ++  LK+        DV+ +EP  +   + ++NAI+ PH+    S    +    LA
Sbjct: 215 SKPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDIAIQLA 272

Query: 337 ALNVLGKIKGYP 348
             NV    +G  
Sbjct: 273 FENVRNFFEGEG 284

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  242 bits (620), Expect = 2e-77
 Identities = 66/317 (20%), Positives = 122/317 (38%), Gaps = 32/317 (10%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGGKAFSNMA 94
           +            ++   I D    +I        +T +              K      
Sbjct: 42  QYIVTDDKEGPDCELEKHIPD-LHVLISTPFHPAYVTAE----RIKKAKNL--KLLLTAG 94

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D+ AA   G+ V    G    + AE      L   R  V     +  G ++   
Sbjct: 95  IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-VA 153

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              +    L+G+T+G +GAGRIG    + +   F  NL+Y+D  Q              +
Sbjct: 154 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ--------------M 198

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
               E+    K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG
Sbjct: 199 APELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARG 258

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASASKWTREGM 332
            +++  A+V+ ++   +     DV++ +P  K  P    M N  + PH +  +   +   
Sbjct: 259 AIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHP-WRYMPNQAMTPHTSGTTIDAQLRY 317

Query: 333 ATLAALNVLGKIKGYPI 349
           A      +    KG   
Sbjct: 318 AAGTKDMLERYFKGEDF 334

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  240 bits (616), Expect = 6e-77
 Identities = 85/341 (24%), Positives = 140/341 (41%), Gaps = 51/341 (14%)

Query: 29  WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAAL- 82
             +LL + + +V       T+  V  + A + D  + ++      ++T      L   L 
Sbjct: 20  CFSLLQDHEVKV----FNNTVKGVGQLAARVAD-VEALVLIRERTRVTRQ----LLDRLP 70

Query: 83  -----SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
                S+ G            ++D+ A    G+ V    G      AEL  +L +AA RR
Sbjct: 71  KLKIISQTGRV----SRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRR 125

Query: 138 IVEADEFMRAG-------LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           I +    ++ G             PN  +G +LKGQT+G+ G G+IG   A      F M
Sbjct: 126 IPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGM 184

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           N++                +G+       +   +  A S D +  ++DV+S+H  L+  T
Sbjct: 185 NVL---------------VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDET 229

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-- 308
             +I    L  MK  A+ VN SR  +++E  +V  L +       +DVFE EP +  G  
Sbjct: 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP-ILQGHT 288

Query: 309 LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           L  M+N I  PHI    + + E    +A  N+L  ++G   
Sbjct: 289 LLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVD 329

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  236 bits (604), Expect = 2e-75
 Identities = 78/318 (24%), Positives = 133/318 (41%), Gaps = 39/318 (12%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E+ +       DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI +
Sbjct: 36  ENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL 94

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE A + +L   R + +    ++AG Y+      F+G  L  QTVGV+G
Sbjct: 95  SNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--KAGTFIGKELGQQTVGVMG 152

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG    ++  +GF   +I YD Y           Y                  S+++
Sbjct: 153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y-----------------VSLED 193

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + +++DVI LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   + 
Sbjct: 194 LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 253

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASKWTREGMATLAAL 338
            VG+D +E E                    L  M N ++ PHIA  ++     M   +  
Sbjct: 254 GVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQ 313

Query: 339 NVLGKIKGYPIWGNPNQV 356
           +++  +          +V
Sbjct: 314 HLVDFLTKGET---STEV 328

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  229 bits (585), Expect = 2e-72
 Identities = 96/330 (29%), Positives = 152/330 (46%), Gaps = 47/330 (14%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS-- 83
             +L +   +V      K  LS E++IA + D C+G+I     ++T D    +  A    
Sbjct: 40  RKILQDGGLQVVE----KQNLSKEELIAELQD-CEGLIVRSATKVTAD----VINAAEKL 90

Query: 84  ----RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
               RAG         G +NVD+ AA + GI V NTP   + + AEL   + +  AR+I 
Sbjct: 91  QVVGRAG--------TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIP 142

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
           +A   M+ G    W    F+G  L G+T+G++G GRIG   A  M + F M  I YD   
Sbjct: 143 QATASMKDG---KWERKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPII 198

Query: 200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259
           +    +   ++G          V       ++E+    D I++H  L  +T  L+N    
Sbjct: 199 S---PEVSASFG----------VQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTF 242

Query: 260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319
           A  KK   +VNC+RG ++DE AL+  L+        LDVF +EP     L + +N I  P
Sbjct: 243 AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCP 302

Query: 320 HIASASKWTREGMATLAALNVLGKIKGYPI 349
           H+ +++K  +       A+  +  +KG  +
Sbjct: 303 HLGASTKEAQSRCGEEIAVQFVDMVKGKSL 332

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  228 bits (583), Expect = 2e-72
 Identities = 80/332 (24%), Positives = 152/332 (45%), Gaps = 50/332 (15%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           I  L E+  +V+        +S E+++ +IG+  D ++     ++T+   + +       
Sbjct: 19  IKTLREKGIQVDY----MPEISKEELLNIIGN-YDIIVVRSRTKVTK---DVIEKGKKLK 70

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            ++RAG        +G +N+D   A K  I V   PG  T++  EL   L +AAAR++  
Sbjct: 71  IIARAG--------IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT 122

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           +    ++G    +      G  L G+T+G++G GRIG+    +      M ++ YD+   
Sbjct: 123 SMALAKSG---IF--KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI 176

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
               +                       S++E+L+ +DVISLH  + K    +I+  +  
Sbjct: 177 ---REKAEKIN----------AKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFE 220

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIV 317
            MK   I+VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV
Sbjct: 221 LMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIV 280

Query: 318 VPHIASASKWTREGMATLAALNVLGKIKGYPI 349
             HI + +K  ++ +A +   N+L  +K   +
Sbjct: 281 TTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM 312

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  231 bits (590), Expect = 5e-71
 Identities = 92/341 (26%), Positives = 150/341 (43%), Gaps = 36/341 (10%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 20  ALGDQVEVRW----VDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVAR 72

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P     + AE A +L LAA+R+I  AD  +R      
Sbjct: 73  AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---T 129

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + F G  + G+TVGV+G GRIG   A+ +   F   ++ YD         +V+    
Sbjct: 130 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--A 178

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                G + ++       D++L  AD IS+H      T  LI+KE LA  K   I+VN +
Sbjct: 179 RAAQLGIELLSL------DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 332
           RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH+ +++   ++  
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA 292

Query: 333 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSI 373
            T  A +V   + G  +   P+ V      N      +  +
Sbjct: 293 GTDVAESVRLALAGEFV---PDAV------NVGGGVVNEEV 324

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  218 bits (557), Expect = 6e-68
 Identities = 77/329 (23%), Positives = 128/329 (38%), Gaps = 52/329 (15%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAA-----LSRAGGK 88
            E+ T          +   I D  D +I        +T+   E +  A     +  AG  
Sbjct: 39  HELITTSDKEGGNSVLDQHIPD-ADIIITTPFHPAYITK---ERIDKAKKLKLVVVAG-- 92

Query: 89  AFSNMAVGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
                 VG +++D++  N+ G  I+V    G    + AE      L   R  V A E + 
Sbjct: 93  ------VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQII 146

Query: 147 AGLYDGWLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                 W           ++G+T+  IGAGRIG      +V  F    + Y  YQA   +
Sbjct: 147 NH---DWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKD 202

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                         E+ V  +R  +++E++ +AD+++++  L   T  LINKE L+  KK
Sbjct: 203 A-------------EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN-----AIV 317
            A LVN +RG +     +   L+   +   G DV+  +P  K  P   +M+N       +
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHP-WRDMRNKYGAGNAM 308

Query: 318 VPHIASASKWTREGMATLAALNVLGKIKG 346
            PH +  +   +   A      +     G
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTG 337

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  212 bits (541), Expect = 4e-65
 Identities = 78/302 (25%), Positives = 120/302 (39%), Gaps = 53/302 (17%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAFSNM 93
              K  L  E +   I D    +       LTED    +  A                  
Sbjct: 30  EFHKGALDDEQLKESIRD-AHFIGLRSRTHLTED----VINAAEKLVAIGAFA------- 77

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
            +G N VD++AA K GI V N P   T + AEL     L   R + EA+     G     
Sbjct: 78  -IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VG 133

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                     +G+ +G+IG G IG+    +  E   M + +YD+     L          
Sbjct: 134 NKLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG--------- 183

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
              N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N SR
Sbjct: 184 ---NATQVQ------HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR 234

Query: 274 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASASKWT 328
           G V+D  AL + L    +    +DVF  EP          L+E  N ++ PHI   S  T
Sbjct: 235 GTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG-GS--T 291

Query: 329 RE 330
           +E
Sbjct: 292 QE 293

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  212 bits (542), Expect = 4e-65
 Identities = 91/305 (29%), Positives = 131/305 (42%), Gaps = 53/305 (17%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAF 90
              T     L   D+I  I      +      QLTE+    +FAA +             
Sbjct: 38  TNVTHLPKALDKADLIKAISS-AHIIGIRSRTQLTEE----IFAAANRLIAVGCFS---- 88

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
               VG N V++ AA K GI V N P   T + AEL     +   RRI        AG  
Sbjct: 89  ----VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG-- 142

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW         ++G+T+G++G G IGS    +  E   M + YYD     +L+      
Sbjct: 143 -GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQY----- 193

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
                 N +       A+S+DE+L+ +DV+SLH    K+T  LI + +L  MKK A L+N
Sbjct: 194 -----GNVKP------AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASAS 325
            +RG  +D  AL + L++  +    +DVF  EP          L  ++N I+ PHI   S
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIG-GS 301

Query: 326 KWTRE 330
             T E
Sbjct: 302 --TEE 304

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  204 bits (521), Expect = 4e-63
 Identities = 63/301 (20%), Positives = 108/301 (35%), Gaps = 38/301 (12%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAA 105
           T      + A   D+ + + G         L   L+R     K    ++ G + + + A 
Sbjct: 26  TFKDAAAVTAADYDQIEVMYG-----NHPLLKTILARPTNQLKFVQVISAGVDYLPLKAL 80

Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
              G+ V NT G+  +  +E   +  L+  R    A    R              + L G
Sbjct: 81  QAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---RQWALPMTTSTLTG 137

Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           Q + + G G+IG + A        M++I  +       + F                   
Sbjct: 138 QQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA-------------- 181

Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
             ++  + L  A+ I     L  TT+HL + E     K++ +L+N  RGP +D  AL+  
Sbjct: 182 -FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240

Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALN 339
           L  + +    LDV E EP     L          + ++ PHI+      R  +  + A N
Sbjct: 241 LDHHQLSMAALDVTEPEP-----LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAAN 295

Query: 340 V 340
            
Sbjct: 296 F 296

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  199 bits (509), Expect = 1e-60
 Identities = 73/294 (24%), Positives = 111/294 (37%), Gaps = 53/294 (18%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D++   + GIA  + PG       +      LA A                   
Sbjct: 67  IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L  +T GV+GAG++G     ++  G    ++  D  +  R            
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
                + V      S++ +L EADVISLH       +  T HL+++ RLA ++    LVN
Sbjct: 153 -EPDGEFV------SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
            SRG V+D  AL   L+      V LDV+E EP   P L   +  I  PHIA     + E
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIA-GY--SLE 261

Query: 331 G--MATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKI 382
           G    T          +G     +   V P           +P    + AL  +
Sbjct: 262 GKLRGTAQIYQAYCAWRGIAERVSLQDVLPETWLAG--LQLNPGCDPAWALATL 313

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  193 bits (492), Expect = 4e-58
 Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 49/241 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD     + GI     PG       E   S  L  A R                 
Sbjct: 70  AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L+ +T+G++G G +GS     + E   +  +  D  +A R            
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
             +           ++DE+++EADV++ H          T HL ++  +  +K  AIL+N
Sbjct: 156 -GDEGDFR------TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
             RGPV+D  AL+  L       V LDV+E EP +   L E  + I   HIA     T E
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIA-GY--TLE 264

Query: 331 G 331
           G
Sbjct: 265 G 265

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  122 bits (307), Expect = 6e-32
 Identities = 59/257 (22%), Positives = 99/257 (38%), Gaps = 40/257 (15%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
              + N  G+     +E      L+  R++    E  +  L   W         LKG+T+
Sbjct: 89  DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTL 143

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
            ++G G IG   A    + F M ++            F   Y                  
Sbjct: 144 LILGTGSIGQHIAHTG-KHFGMKVLGVS-RSGRERAGFDQVYQ---------------LP 186

Query: 229 SMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           +++++L +AD ++S+ P   + T+HL    R    K  AIL N  RG  I+E  L+  L+
Sbjct: 187 ALNKMLAQADVIVSVLP-ATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245

Query: 288 QNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALNVL 341
              +    LDVFE EP     L          N I+ PH ++ S    + +A +   N +
Sbjct: 246 TGKLGMAVLDVFEQEP-----LPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVRNYI 298

Query: 342 GKIKGYPIWGNPNQVEP 358
             I G P+     +++ 
Sbjct: 299 RFIDGQPL---DGKIDF 312

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  116 bits (292), Expect = 7e-30
 Identities = 54/284 (19%), Positives = 91/284 (32%), Gaps = 46/284 (16%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEA 141
           KA   +  G + +         +   + P        +     E A S  L   RR  + 
Sbjct: 61  KAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDY 120

Query: 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201
                  L   W P        +  +VG++GAG +G+  A  +   +   L  +      
Sbjct: 121 QALKNQAL---WKP--LPEYTREEFSVGIMGAGVLGAKVAESLQ-AWGFPLRCWS-RSRK 173

Query: 202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLA 260
                 +  G                  +   L +   +I+L P     T  +IN E L 
Sbjct: 174 SWPGVESYVG---------------REELRAFLNQTRVLINLLP-NTAQTVGIINSELLD 217

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKN 314
            +   A ++N +RG  + E  L+  L    +    LDVF  EP     L +         
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-----LPQESPLWRHPR 272

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 358
             + PHIA+ +           +  +    KG P+     QV+ 
Sbjct: 273 VAMTPHIAAVT--RPAEAIDYISRTITQLEKGEPV---TGQVDR 311

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           + G  V V+G GR+G + AR         +                     +   G +P 
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
              +     + LR+ DV             ++    LA M     +++ +  P   +   
Sbjct: 203 HISK---AAQELRDVDVCINT-----IPALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254

Query: 283 VEHLKQNPMFRVGL 296
            E      +   GL
Sbjct: 255 AEKRGIKALLVPGL 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 69/468 (14%), Positives = 132/468 (28%), Gaps = 154/468 (32%)

Query: 14  GK----------YRVVSTKPMPGTRWINL--------LIEQDCRVEICTQ-KKTILSVED 54
           GK          Y+V          W+NL        ++E     ++  Q      S  D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSD 218

Query: 55  IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV-DVNAANKYGIAVG 113
             + I  +   +  +L       L  +      K + N  +   NV +  A N + +   
Sbjct: 219 HSSNIKLRIHSIQAELRR-----LLKS------KPYENCLLVLLNVQNAKAWNAFNL--- 264

Query: 114 NTPG--VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-------VGNL-- 162
                 +L  TT     +  L+AA     + +     L    + +L          +L  
Sbjct: 265 ---SCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 163 --LKG--QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG 218
             L    + + +I             +         +      +L   + +    L+   
Sbjct: 321 EVLTTNPRRLSIIAE----------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 219 EQ---------------P-----VTWKRASS------MDEVLREADV--------ISLHP 244
            +               P     + W           ++++ + + V        IS+  
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 245 VLDKTTYHLINKERLATMKKEAILVN--------CSRGPVIDEVA------LVEHLKQ-- 288
           +  +    L N+  L        +V+         S   +   +       +  HLK   
Sbjct: 431 IYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 289 ----NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKI 344
                 +FR    VF D          ++  I       ++ W   G + L  L  L   
Sbjct: 486 HPERMTLFR---MVFLD-------FRFLEQKI----RHDSTAWNASG-SILNTLQQLKFY 530

Query: 345 KGYPIWGN-P------NQVEPFLNENAQPPAASPSIVNSKALGKIKIS 385
           K Y I  N P      N +  FL      P    +++ SK    ++I+
Sbjct: 531 KPY-ICDNDPKYERLVNAILDFL------PKIEENLICSKYTDLLRIA 571

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.91
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.9
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.81
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.8
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.75
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.73
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.71
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.7
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.64
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.63
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.36
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.35
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.32
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.32
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.31
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.31
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.27
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.26
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.25
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.23
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.23
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.22
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.22
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.21
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.19
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.18
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.18
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.17
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.16
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.15
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.13
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.12
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.1
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.07
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.04
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.03
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.02
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.01
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.0
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.99
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.98
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.96
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.95
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.93
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.92
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.92
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.88
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.86
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.85
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.85
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.85
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.84
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.83
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.81
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.79
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.28
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.79
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.77
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.76
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.69
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.66
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.66
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.64
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.63
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.61
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.61
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.59
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.57
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.55
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.54
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.52
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.52
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.52
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.49
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.48
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.48
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.48
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.47
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.47
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.46
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.42
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.38
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.38
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.37
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.36
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.35
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.34
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.31
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.29
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.28
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.27
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.26
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.25
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.24
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.24
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.23
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.21
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.19
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.19
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.17
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.16
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.16
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.16
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.15
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.15
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.14
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.13
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.12
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.12
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.06
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.05
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.02
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.02
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	97.97
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.97
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.95
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.94
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.91
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.89
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.87
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.86
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.78
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.77
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.74
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.73
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.72
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.7
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.69
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.69
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.65
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.63
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.63
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.62
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.62
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.61
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.6
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.57
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.54
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.51
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.51
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.5
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.47
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.47
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.42
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.42
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.41
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.39
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.39
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.39
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.36
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.35
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.34
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.31
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.31
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.31
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.3
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.3
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.3
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.28
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.26
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.26
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.25
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.23
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.23
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.21
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.2
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.17
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.17
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.17
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.14
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.14
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.13
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.12
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.12
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.1
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.08
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.08
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.04
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.02
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.02
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.02
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.01
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	96.98
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.94
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.94
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.92
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.91
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.9
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.89
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.87
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.85
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.84
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.84
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.83
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.81
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.8
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.8
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.77
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.76
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.73
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.72
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.66
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.65
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.64
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.62
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.58
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.55
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.53
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.53
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.51
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.47
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.47
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.42
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.42
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.42
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.39
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.38
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.37
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.36
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.36
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.34
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.33
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.32
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.32
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.31
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.3
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.3
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.29
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.29
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.27
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.24
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.23
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.22
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.19
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.19
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.17
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.16
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.14
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.13
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.13
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.12
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.12
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.12
4had_A	350	Probable oxidoreductase protein; structural genomi	96.1
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.09
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.09
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.08
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.07
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.03
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.03
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.02
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.02
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.02
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.01
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.01
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	95.99
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.96
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.96
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.94
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.94
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	95.89
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.87
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.86
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.85
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	95.84
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	95.83
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.82
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	95.82
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.81
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.81
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.8
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	95.79
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.78
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	95.78
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.77
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.76
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.76
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.76
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.75
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.75
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.72
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.7
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.67
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	95.63
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.63
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.62
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.62
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.61
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.59
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.58
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.58
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.58
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.54
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	95.53
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.52
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.51
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.46
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.45
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.43
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	95.41
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.4
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	95.37
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.36
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.34
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	95.32
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.3
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.28
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.28
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.28
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	95.26
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.24
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.23
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.21
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.2
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.18
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.18
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.15
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	95.14
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.13
3on5_A	362	BH1974 protein; structural genomics, joint center	95.12
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.1
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.09
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.08
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.07
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.07
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.03
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	95.03
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.01
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.01
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	94.99
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.98
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.98
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.98
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	94.98
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	94.97
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	94.97
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.95
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.95
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.95
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	94.94
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.94
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	94.94
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	94.93
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.92
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.91
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.86
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.85
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.85
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.76
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	94.75
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.74
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	94.71
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.7
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.68
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.66
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.66
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.66
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.65
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.63
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.56
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	94.56
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.55
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.54
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	94.54
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	94.54
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.54
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	94.51
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	94.51
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.49
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.49
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	94.47
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.46
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.44
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.43
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.43
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.42
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.4
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.36
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.35
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.35
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.34
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.31
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.3
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	94.28
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.22
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	94.2
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	94.18
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.16
1lnq_A	336	MTHK channels, potassium channel related protein;	94.13
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.11
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	94.1
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.08
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.05
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	94.02
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.01
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	93.98
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	93.89
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	93.88
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.86
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.81
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	93.79
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.79
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.79
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	93.78
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	93.77
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	93.76
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	93.75
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	93.74
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	93.72
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.69
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.67
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	93.66
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	93.65
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.64
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.63
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	93.61
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	93.56
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	93.55
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.55
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.53
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	93.48
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.48
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.41
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.41
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	93.38
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	93.36
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	93.34
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.34
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.24
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	93.23
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.22
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	93.22
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.16
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.16
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.11
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	93.07
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.04
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	92.98
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	92.97
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	92.95
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	92.94
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	92.92
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.89
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	92.89
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	92.87
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	92.85
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	92.83
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	92.82
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.8
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	92.78
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.76
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.75
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	92.71
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	92.71
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.62
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.62
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.59
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	92.59
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	92.57
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	92.51

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=2.6e-72  Score=557.51  Aligned_cols=318  Identities=27%  Similarity=0.422  Sum_probs=288.0

Q ss_pred             CCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-hccCCceEE
Q 015895           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFS   91 (398)
Q Consensus        13 ~~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~-~~l~~k~i~   91 (398)
                      .+++|||++++++++ ..+.|++. +++++.. .+...+++++.+.+.+ +|++++++.+++++++++++ |+|  |+|+
T Consensus        26 ~~~~kvlv~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~l~~~~~~-~d~li~~~~~~i~~~~l~~~~~~L--k~I~   99 (345)
T 4g2n_A           26 HPIQKAFLCRRFTPA-IEAELRQR-FDLEVNL-EDTVLTPSGIASRAHG-AEVLFVTATEAITAEVIRKLQPGL--KTIA   99 (345)
T ss_dssp             -CCCEEEESSCCCHH-HHHHHHHH-SEEEECT-TCCCCCHHHHHHHTTT-CSEEEECTTSCBCHHHHHHTTTTC--CEEE
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHcc-CCEEEec-CCCCCCHHHHHHHhcC-CeEEEEeCCCCCCHHHHHhhcCCc--eEEE
Confidence            468899999999985 67888775 5666543 3345789999998875 99999998889999999998 677  9999


Q ss_pred             EeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 015895           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (398)
Q Consensus        92 ~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (398)
                      +.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|..|.+..+.|.+|+|||||||
T Consensus       100 ~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGII  179 (345)
T 4g2n_A          100 TLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIF  179 (345)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEE
T ss_pred             EcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999888765667899999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhh
Q 015895          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (398)
Q Consensus       172 GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~  251 (398)
                      |+|+||+.+|+++ ++|||+|++|||++......           .     +.....++++++++||+|++|+|+|++|+
T Consensus       180 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~-----------~-----g~~~~~~l~ell~~sDvV~l~~Plt~~T~  242 (345)
T 4g2n_A          180 GMGRIGRAIATRA-RGFGLAIHYHNRTRLSHALE-----------E-----GAIYHDTLDSLLGASDIFLIAAPGRPELK  242 (345)
T ss_dssp             SCSHHHHHHHHHH-HTTTCEEEEECSSCCCHHHH-----------T-----TCEECSSHHHHHHTCSEEEECSCCCGGGT
T ss_pred             EeChhHHHHHHHH-HHCCCEEEEECCCCcchhhh-----------c-----CCeEeCCHHHHHhhCCEEEEecCCCHHHH
Confidence            9999999999997 79999999999986432111           0     12234589999999999999999999999


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      ++|+++.|+.||+|++|||+|||+++|++||+++|++|+|+||+||||++||+.++|||++|||++|||+|++|.+++++
T Consensus       243 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~  322 (345)
T 4g2n_A          243 GFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDA  322 (345)
T ss_dssp             TCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHH
T ss_pred             HHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCC
Q 015895          332 MATLAALNVLGKIKGYPIWGNP  353 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~v  353 (398)
                      ++..+++|+.+|++|+++.|.|
T Consensus       323 ~~~~~~~ni~~~l~g~~~~~~V  344 (345)
T 4g2n_A          323 MGWLLIQGIEALNQSDVPDNLI  344 (345)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBC
T ss_pred             HHHHHHHHHHHHHcCCCCCCCc
Confidence            9999999999999999998876

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=3.3e-72  Score=567.18  Aligned_cols=346  Identities=27%  Similarity=0.340  Sum_probs=296.1

Q ss_pred             eCCCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCc
Q 015895           10 WNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGK   88 (398)
Q Consensus        10 ~~~~~~~kvlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k   88 (398)
                      ..|+++||||+++++++. ..+.|++.++ ++++..   ..++++++.+.+.+ +|++++++.+++++++++++|+|  |
T Consensus        10 ~~~~~~~kIl~~~~i~~~-~~~~l~~~g~~~v~~~~---~~~~~~~l~~~~~~-~d~l~v~~~~~i~~~~l~~~p~L--k   82 (416)
T 3k5p_A           10 SLSRDRINVLLLEGISQT-AVEYFKSSGYTNVTHLP---KALDKADLIKAISS-AHIIGIRSRTQLTEEIFAAANRL--I   82 (416)
T ss_dssp             --CGGGSCEEECSCCCHH-HHHHHHHTTCCCEEECS---SCCCHHHHHHHHTT-CSEEEECSSCCBCHHHHHHCTTC--C
T ss_pred             CCCCCCcEEEEECCCCHH-HHHHHHHCCCcEEEECC---CCCCHHHHHHHccC-CEEEEEcCCCCCCHHHHHhCCCc--E
Confidence            467888999999999875 6888988887 776542   24689999998875 99999999999999999999988  9


Q ss_pred             eEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeE
Q 015895           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (398)
Q Consensus        89 ~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktv  168 (398)
                      +|++.|+|+||||+++|+++||.|+|+|++|+++||||+++++|+++|+++++++.+++|.|   .+..+.+.+++|||+
T Consensus        83 ~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W---~~~~~~~~el~gktv  159 (416)
T 3k5p_A           83 AVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGW---EKTAIGSREVRGKTL  159 (416)
T ss_dssp             EEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC---CCCCTTCCCSTTCEE
T ss_pred             EEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccc---cccCCCCccCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999985   444456789999999


Q ss_pred             EEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCh
Q 015895          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (398)
Q Consensus       169 GIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~  248 (398)
                      ||||+|+||+.+|+++ ++|||+|++||++.....                  .......+++|++++||+|++|+|+|+
T Consensus       160 GIIGlG~IG~~vA~~l-~~~G~~V~~yd~~~~~~~------------------~~~~~~~sl~ell~~aDvV~lhvPlt~  220 (416)
T 3k5p_A          160 GIVGYGNIGSQVGNLA-ESLGMTVRYYDTSDKLQY------------------GNVKPAASLDELLKTSDVVSLHVPSSK  220 (416)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECTTCCCCB------------------TTBEECSSHHHHHHHCSEEEECCCC--
T ss_pred             EEEeeCHHHHHHHHHH-HHCCCEEEEECCcchhcc------------------cCcEecCCHHHHHhhCCEEEEeCCCCH
Confidence            9999999999999997 899999999998753210                  012234689999999999999999999


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-----CCCCCCCceEEcCCCCC
Q 015895          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       249 ~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-----~~L~~~~nvilTPHia~  323 (398)
                      +|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+++||+||||++||++.     +|||++|||++|||+|+
T Consensus       221 ~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~  300 (416)
T 3k5p_A          221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGG  300 (416)
T ss_dssp             ---CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTT
T ss_pred             HHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999753     58999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcceeeec
Q 015895          324 ASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLTIS  395 (398)
Q Consensus       324 ~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (398)
                      +|.|++++++..+++|+.+|++++.+.+.|| . |-++-    +...+.    .++ .+..+|+|+|+..|+
T Consensus       301 ~T~ea~~~~~~~~~~nl~~~l~~g~~~~~Vn-~-p~~~~----~~~~~~----~r~-~~~h~n~p~~~~~i~  361 (416)
T 3k5p_A          301 STEEAQERIGTEVTRKLVEYSDVGSTVGAVN-F-PQVQL----PPRPTG----TRF-MHVHENRPGILNSLM  361 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCCCTTBSS-S-CCCCC----CCCSSS----EEE-EEEECCCTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhCCCCceee-C-CCcCC----CCCCCc----eEE-EEEecCCccHHHHHH
Confidence            9999999999999999999999999999996 4 75542    221111    111 345688888876654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=3.7e-70  Score=552.95  Aligned_cols=319  Identities=24%  Similarity=0.328  Sum_probs=278.7

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceE
Q 015895           12 PNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (398)
Q Consensus        12 ~~~~~kvlv~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i   90 (398)
                      |+++||||+++++++. .++.|++.++ ++++...   .++++++.+.+.+ +|++++++.+++++++++++|+|  |+|
T Consensus         1 ~~~~~kil~~~~~~~~-~~~~l~~~~~~~v~~~~~---~~~~~~l~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L--k~I   73 (404)
T 1sc6_A            1 EKDKIKFLLVEGVHQK-ALESLRAAGYTNIEFHKG---ALDDEQLKESIRD-AHFIGLRSRTHLTEDVINAAEKL--VAI   73 (404)
T ss_dssp             CCSSCCEEECSCCCHH-HHHHHHHTTCCCEEECSS---CCCHHHHHHHTTS-CSEEEECSSCCBCHHHHHHCSSC--CEE
T ss_pred             CCCceEEEEeCCCCHH-HHHHHHhCCCcEEEEcCC---CCCHHHHHHHhcC-CeEEEEcCCCCCCHHHHhhCCCC--cEE
Confidence            4567899999998875 6888888777 6765322   3688999888875 99999999999999999999988  999


Q ss_pred             EEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE
Q 015895           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (398)
Q Consensus        91 ~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGI  170 (398)
                      +++|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|   .+..+.|.+|+|||+||
T Consensus        74 ~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W---~~~~~~~~el~gktlGi  150 (404)
T 1sc6_A           74 GAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVG---NKLAAGSFEARGKKLGI  150 (404)
T ss_dssp             EECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCC---C-----CCCSTTCEEEE
T ss_pred             EECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCc---cccCCCccccCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999999985   44445678999999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhh
Q 015895          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (398)
Q Consensus       171 IGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T  250 (398)
                      ||+|+||+.+|+++ ++|||+|++|||+....              .+    +.....+++|++++||+|++|+|+|++|
T Consensus       151 IGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~--------------~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t  211 (404)
T 1sc6_A          151 IGYGHIGTQLGILA-ESLGMYVYFYDIENKLP--------------LG----NATQVQHLSDLLNMSDVVSLHVPENPST  211 (404)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCCC--------------CT----TCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred             EeECHHHHHHHHHH-HHCCCEEEEEcCCchhc--------------cC----CceecCCHHHHHhcCCEEEEccCCChHH
Confidence            99999999999997 79999999999975321              01    1223458999999999999999999999


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-----CCCCCCCCceEEcCCCCCCc
Q 015895          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIASAS  325 (398)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-----~~~L~~~~nvilTPHia~~T  325 (398)
                      +++|+++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||++     ++|||++|||++|||+|++|
T Consensus       212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T  291 (404)
T 1sc6_A          212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST  291 (404)
T ss_dssp             TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCS
T ss_pred             HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999975     35899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 015895          326 KWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLN  361 (398)
Q Consensus       326 ~ea~~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~  361 (398)
                      .|++++++..+++|+.+|++|+++.|.|| + |.++
T Consensus       292 ~ea~~~~~~~~~~nl~~~l~g~~~~~~vn-~-p~~~  325 (404)
T 1sc6_A          292 QEAQENIGLEVAGKLIKYSDNGSTLSAVN-F-PEVS  325 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCTTBSS-S-CCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcceec-c-cccc
Confidence            99999999999999999999999999995 5 7654

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=8.5e-70  Score=537.38  Aligned_cols=317  Identities=30%  Similarity=0.440  Sum_probs=286.1

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      +++|||++++++++ ..+.|++.+ ++.+.. .+..++++++.+.+.+ +|+++++..+++++++++++|+|  |+|++.
T Consensus         1 m~~kvlv~~~~~~~-~~~~l~~~~-~v~~~~-~~~~~~~~~~~~~~~~-~d~~i~~~~~~i~~~~l~~~~~L--k~I~~~   74 (330)
T 4e5n_A            1 MLPKLVITHRVHEE-ILQLLAPHC-ELITNQ-TDSTLTREEILRRCRD-AQAMMAFMPDRVDADFLQACPEL--RVIGCA   74 (330)
T ss_dssp             CCCEEEECSCCCHH-HHHHHTTTC-EEECCC-SSSCCCHHHHHHHHTT-CSEEEECTTCCBCHHHHHHCTTC--CEEEES
T ss_pred             CCCEEEEecCCCHH-HHHHHHhCC-eEEEec-CCCCCCHHHHHHHhCC-CeEEEEeCCCCCCHHHHhhCCCC--cEEEEC
Confidence            46789999999875 688888764 665432 2334689999988875 99999988889999999999988  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+||||+++|+++||.|+|+|++++.+||||+++++|+++|+++++++.+++|+|..|.+ .+.|.+|+||||||||+
T Consensus        75 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~tvGIIG~  153 (330)
T 4e5n_A           75 LKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGM  153 (330)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCS-CCCCCCSTTCEEEEECC
T ss_pred             CCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCc-cccCCccCCCEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999988876 45689999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChh-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          174 GRIGSAYARMMVEGFKMNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       174 G~IG~~vA~~la~~fG~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      |+||+.+|+++ ++|||+|++|||++. .....          ..+     .. ..++++++++||+|++|+|+|++|++
T Consensus       154 G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~~----------~~g-----~~-~~~l~ell~~aDvV~l~~P~t~~t~~  216 (330)
T 4e5n_A          154 GAIGLAMADRL-QGWGATLQYHEAKALDTQTEQ----------RLG-----LR-QVACSELFASSDFILLALPLNADTLH  216 (330)
T ss_dssp             SHHHHHHHHHT-TTSCCEEEEECSSCCCHHHHH----------HHT-----EE-ECCHHHHHHHCSEEEECCCCSTTTTT
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCCcHhHHH----------hcC-----ce-eCCHHHHHhhCCEEEEcCCCCHHHHH
Confidence            99999999997 899999999999873 22111          011     22 24899999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCC-------CCC-CCCCCCCCceEEcCCCCCC
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-------PYM-KPGLSEMKNAIVVPHIASA  324 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~E-------P~~-~~~L~~~~nvilTPHia~~  324 (398)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++|       |++ ++|||++|||++|||+|++
T Consensus       217 li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~  296 (330)
T 4e5n_A          217 LVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSA  296 (330)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCC
Confidence            99999999999999999999999999999999999999999999999999       964 5799999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          325 SKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       325 T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      |.+++++++..+++|+.+|++|+++.|.||
T Consensus       297 t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  326 (330)
T 4e5n_A          297 VRAVRLEIERCAAQNILQALAGERPINAVN  326 (330)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCTTBSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCCCCCccC
Confidence            999999999999999999999999999995

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=1.2e-70  Score=544.25  Aligned_cols=310  Identities=29%  Similarity=0.392  Sum_probs=267.0

Q ss_pred             eEEEEeCCCCch--HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           16 YRVVSTKPMPGT--RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        16 ~kvlv~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      ||||++..-.++  .+.+.|++.  .+++........+.+++.     ++|+++++..+++++++++++|+|  |+|++.
T Consensus         1 Mkil~~~~~~~~~p~~~e~l~~~--~~~~~~~~~~~~~~~~l~-----~ad~i~v~~~~~i~~~~l~~~p~L--k~I~~~   71 (334)
T 3kb6_A            1 MNVLFTSVPQEDVPFYQEALKDL--SLKIYTTDVSKVPENELK-----KAELISVFVYDKLTEELLSKMPRL--KLIHTR   71 (334)
T ss_dssp             -CEEECSCCTTHHHHHHHHTTTS--CEEECSSCGGGSCHHHHH-----HCSEEEECTTSCBCHHHHHTCTTC--CEEEES
T ss_pred             CEEEEeCCCcccCHHHHHHHHhC--CcEEEeCCcccCCHHHhc-----CCCEEEEeCCCCCCHHHHhcCCCC--cEEEEC
Confidence            688887532221  133444443  344443333334555553     389999999999999999999998  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|++.++++.+++|.|..|  ....|.+++|||+||||+
T Consensus        72 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~--~~~~~~~l~g~tvGIiG~  149 (334)
T 3kb6_A           72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQD--SEILARELNRLTLGVIGT  149 (334)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--GGGCBCCGGGSEEEEECC
T ss_pred             CcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccc--cccccceecCcEEEEECc
Confidence            999999999999999999999999999999999999999999999999999999998554  345788999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (398)
Q Consensus       174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l  253 (398)
                      |+||+.+|+++ ++|||+|++|||+.......           .+     . ...+++|++++||+|++|+|+|++|++|
T Consensus       150 G~IG~~va~~~-~~fg~~v~~~d~~~~~~~~~-----------~~-----~-~~~~l~ell~~sDivslh~Plt~~T~~l  211 (334)
T 3kb6_A          150 GRIGSRVAMYG-LAFGMKVLCYDVVKREDLKE-----------KG-----C-VYTSLDELLKESDVISLHVPYTKETHHM  211 (334)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH-----------TT-----C-EECCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             chHHHHHHHhh-cccCceeeecCCccchhhhh-----------cC-----c-eecCHHHHHhhCCEEEEcCCCChhhccC
Confidence            99999999997 89999999999987653221           11     1 2368999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-C---------------CCCCCCceEE
Q 015895          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P---------------GLSEMKNAIV  317 (398)
Q Consensus       254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~---------------~L~~~~nvil  317 (398)
                      ||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++. +               |||++|||++
T Consensus       212 i~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvil  291 (334)
T 3kb6_A          212 INEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII  291 (334)
T ss_dssp             BCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEE
T ss_pred             cCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEE
Confidence            99999999999999999999999999999999999999999999999999632 2               6899999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       318 TPHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      |||+|++|.|++++++..+++|+.+|++|++....+|
T Consensus       292 TPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n  328 (334)
T 3kb6_A          292 TPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGN  328 (334)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGG
T ss_pred             CCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence            9999999999999999999999999999998766664

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.4e-70  Score=541.33  Aligned_cols=314  Identities=28%  Similarity=0.404  Sum_probs=251.9

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEE
Q 015895           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (398)
Q Consensus        12 ~~~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~   91 (398)
                      +++++|||++++++++ .++.|++ .+++.....   ..+++++.+.+. ++|++++++.+++++++++++|+|  |+|+
T Consensus        27 ~~~~~~vl~~~~~~~~-~~~~L~~-~~~v~~~~~---~~~~~~~~~~~~-~~d~li~~~~~~i~~~~l~~~p~L--k~I~   98 (340)
T 4dgs_A           27 RNVKPDLLLVEPMMPF-VMDELQR-NYSVHRLYQ---AADRPALEAALP-SIRAVATGGGAGLSNEWMEKLPSL--GIIA   98 (340)
T ss_dssp             ------CEECSCCCHH-HHHTHHH-HSCCEETTC---GGGHHHHHHHGG-GCCEEEEETTTCBCHHHHHHCSSC--CEEE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHhc-CCcEEEeCC---CCCHHHHHHHhC-CcEEEEEcCCCCCCHHHHhhCCCC--EEEE
Confidence            4578899999999875 6888876 355544321   236788887775 599999998889999999999988  9999


Q ss_pred             EeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 015895           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (398)
Q Consensus        92 ~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (398)
                      +.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|..+. ....|.+|+|||||||
T Consensus        99 ~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~gktiGII  177 (340)
T 4dgs_A           99 INGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGE-QLPLGHSPKGKRIGVL  177 (340)
T ss_dssp             EESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCCCCCTTCEEEEE
T ss_pred             ECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCccccc-CcCccccccCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999965431 1235789999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhh
Q 015895          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (398)
Q Consensus       172 GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~  251 (398)
                      |+|+||+.+|+++ ++|||+|++|||++...                   .++....+++|++++||+|++|+|+|++|+
T Consensus       178 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~~~~~~~sl~ell~~aDvVil~vP~t~~t~  237 (340)
T 4dgs_A          178 GLGQIGRALASRA-EAFGMSVRYWNRSTLSG-------------------VDWIAHQSPVDLARDSDVLAVCVAASAATQ  237 (340)
T ss_dssp             CCSHHHHHHHHHH-HTTTCEEEEECSSCCTT-------------------SCCEECSSHHHHHHTCSEEEECC-------
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEcCCcccc-------------------cCceecCCHHHHHhcCCEEEEeCCCCHHHH
Confidence            9999999999997 79999999999986431                   112234689999999999999999999999


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      ++|+++.|+.||+|++|||+|||+++|++||+++|++|+|+||+||||++||++++|||++|||++|||+|++|.+++++
T Consensus       238 ~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~  317 (340)
T 4dgs_A          238 NIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMA  317 (340)
T ss_dssp             ---CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHH
T ss_pred             HHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 015895          332 MATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      ++..+++|+.+|++|+++.|.||
T Consensus       318 ~~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          318 MGKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTBC-
T ss_pred             HHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999885

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=5.4e-68  Score=526.14  Aligned_cols=314  Identities=27%  Similarity=0.391  Sum_probs=271.1

Q ss_pred             CeEEEEeCCCCc-hHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHH-HHHHhhccCCceEE
Q 015895           15 KYRVVSTKPMPG-TRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET-LFAALSRAGGKAFS   91 (398)
Q Consensus        15 ~~kvlv~~~~~~-~~~~~~l-~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~-~l~~~~~l~~k~i~   91 (398)
                      +|||++.+..+. ..+++.+ ++.++++.....   ..+ +|+.+.+. ++|++++++.++++++ +++++|+.++|+|+
T Consensus         1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~-~~~~~~~~-~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~   75 (343)
T 2yq5_A            1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQ---ALT-SATVDLAE-GCSSVSLKPLGPVDEEVVYQKLSEYGVKCIG   75 (343)
T ss_dssp             -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESS---CCS-TTGGGGGT-TCSEEEECCSSCBCCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEEecCcccHHHHHHHHHhCCeEEEECCC---CCC-HHHHHHhc-CCcEEEEcCCCCcCHHHHHHhccccCceEEE
Confidence            378988763332 2244443 456777765543   233 45556665 4999999988999999 99999875569999


Q ss_pred             EeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHH-cCccCCCCCCcccccccCCCeEEE
Q 015895           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR-AGLYDGWLPNLFVGNLLKGQTVGV  170 (398)
Q Consensus        92 ~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~-~g~~~~w~~~~~~g~~l~gktvGI  170 (398)
                      +.|+|+||||+++|+++||.|+|+|++++.+||||+++++|+++|+++.+++.++ +|+|. |.. .+.|.+|+||||||
T Consensus        76 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~-~~~~~~l~gktvgI  153 (343)
T 2yq5_A           76 LRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPS-NLISNEIYNLTVGL  153 (343)
T ss_dssp             ESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCG-GGCBCCGGGSEEEE
T ss_pred             ECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-ccc-CCCccccCCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999 99875 753 35789999999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhh
Q 015895          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (398)
Q Consensus       171 IGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T  250 (398)
                      ||+|+||+.+|+++ ++|||+|++|||++.+..+.                 .. ...++++++++||+|++|+|+|++|
T Consensus       154 iGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~-----------------~~-~~~~l~ell~~aDvV~l~~Plt~~t  214 (343)
T 2yq5_A          154 IGVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFEP-----------------FL-TYTDFDTVLKEADIVSLHTPLFPST  214 (343)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCGGGTT-----------------TC-EECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EecCHHHHHHHHHH-hhCCCEEEEECCChhhhhhc-----------------cc-cccCHHHHHhcCCEEEEcCCCCHHH
Confidence            99999999999997 79999999999987542110                 11 2248999999999999999999999


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC--CC------------CCCCCCCceE
Q 015895          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK------------PGLSEMKNAI  316 (398)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~--~~------------~~L~~~~nvi  316 (398)
                      +++|+++.|+.||+|++|||+|||+++|++||+++|++|+++||+||||++||+  +.            +|||++|||+
T Consensus       215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvi  294 (343)
T 2yq5_A          215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVV  294 (343)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEE
T ss_pred             HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEE
Confidence            999999999999999999999999999999999999999999999999999993  33            2799999999


Q ss_pred             EcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          317 VVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       317 lTPHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      +|||+|++|.++++++...+++|+.+|++|+++.|.||
T Consensus       295 lTPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~~~~v~  332 (343)
T 2yq5_A          295 ITPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSIVN  332 (343)
T ss_dssp             ECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC-
T ss_pred             ECCccccchHHHHHHHHHHHHHHHHHHHcCCCCCceEC
Confidence            99999999999999999999999999999999999995

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=3.3e-67  Score=516.83  Aligned_cols=306  Identities=23%  Similarity=0.268  Sum_probs=270.0

Q ss_pred             CCeEEEEeCCCCchHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEE
Q 015895           14 GKYRVVSTKPMPGTRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~   92 (398)
                      ++||||++++..+. |.+.| ++..+++++...    .+.+++.+.+.+ +|+++++.  ++++++++++|+|  |+|++
T Consensus         4 ~~mkili~~~~~~~-~~~~L~~~~~p~~~~~~~----~~~~~~~~~~~~-ad~li~~~--~~~~~~l~~~~~L--k~I~~   73 (324)
T 3hg7_A            4 SQRTLLLLSQDNAH-YERLLKAAHLPHLRILRA----DNQSDAEKLIGE-AHILMAEP--ARAKPLLAKANKL--SWFQS   73 (324)
T ss_dssp             CCEEEEEESTTHHH-HHHHHHHSCCTTEEEEEC----SSHHHHHHHGGG-CSEEEECH--HHHGGGGGGCTTC--CEEEE
T ss_pred             cccEEEEecCCCHH-HHHHHhhccCCCeEEEeC----CChhHHHHHhCC-CEEEEECC--CCCHHHHhhCCCc--eEEEE
Confidence            45999999999874 89999 666667766543    256777777775 99999863  4567889999988  99999


Q ss_pred             eeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 015895           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (398)
Q Consensus        93 ~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (398)
                      .|+|+|+||++++++ ||.|+|+||+++.+||||+++++|+++|+++++++.+++|+|.   +  ..+.+++|+||||||
T Consensus        74 ~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~---~--~~~~~l~g~tvGIIG  147 (324)
T 3hg7_A           74 TYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQ---S--HPYQGLKGRTLLILG  147 (324)
T ss_dssp             SSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCC---C--CCCCCSTTCEEEEEC
T ss_pred             CCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCc---C--CCCcccccceEEEEE
Confidence            999999999998765 9999999999999999999999999999999999999999854   3  246799999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      +|+||+.+|+++ ++|||+|++||+++....              . . .......+++|++++||+|++|+|+|++|++
T Consensus       148 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~-~-~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~  210 (324)
T 3hg7_A          148 TGSIGQHIAHTG-KHFGMKVLGVSRSGRERA--------------G-F-DQVYQLPALNKMLAQADVIVSVLPATRETHH  210 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCCT--------------T-C-SEEECGGGHHHHHHTCSEEEECCCCCSSSTT
T ss_pred             ECHHHHHHHHHH-HhCCCEEEEEcCChHHhh--------------h-h-hcccccCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence            999999999997 799999999999874310              0 0 0112246899999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      +|+++.|+.||+|++|||+|||+++|++||+++|++|+++||+||||++||++ ++|||++|||++|||+|+.|.+  .+
T Consensus       211 li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~  288 (324)
T 3hg7_A          211 LFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DD  288 (324)
T ss_dssp             SBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HH
T ss_pred             HhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HH
Confidence            99999999999999999999999999999999999999999999999999975 4799999999999999999976  57


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 015895          332 MATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      +...+++|+.+|++|+++.|.||
T Consensus       289 ~~~~~~~nl~~~~~G~~~~~~V~  311 (324)
T 3hg7_A          289 VAQIFVRNYIRFIDGQPLDGKID  311 (324)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             HHHHHHHHHHHHHcCCCCcceEC
Confidence            89999999999999999999995

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=2.2e-66  Score=516.69  Aligned_cols=315  Identities=27%  Similarity=0.399  Sum_probs=275.5

Q ss_pred             CeEEEEeCCCCchH----HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEe-cCCccccHHHHHHhhccCCce
Q 015895           15 KYRVVSTKPMPGTR----WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-QLTEDWGETLFAALSRAGGKA   89 (398)
Q Consensus        15 ~~kvlv~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~-~~~~~~~~~~l~~~~~l~~k~   89 (398)
                      +|||++.+.+....    ..+.|.  +++++++..  ...+++++.+.+.+ +|++++ +..+++++++++++|+|  |+
T Consensus         2 smki~~~d~~~~~~~~~~~~~~l~--~~~v~~~~~--~~~~~~~l~~~~~~-ad~li~~~~~~~~~~~~l~~~~~L--k~   74 (352)
T 3gg9_A            2 SLKIAVLDDYQDAVRKLDCFSLLQ--DHEVKVFNN--TVKGVGQLAARVAD-VEALVLIRERTRVTRQLLDRLPKL--KI   74 (352)
T ss_dssp             CCEEEECCCTTCCGGGSGGGGGGT--TSEEEECCS--CCCSHHHHHHHTTT-CSEEEECTTSSCBCHHHHTTCTTC--CE
T ss_pred             ceEEEEEcCccccchhhhhhhhhc--CceEEEecC--CCCCHHHHHHHhcC-CeEEEEeCCCCCCCHHHHhhCCCC--eE
Confidence            48999988765421    123343  467776543  22478899888875 999998 67789999999999988  99


Q ss_pred             EEEeeccc----cccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCC-------CCCCcc
Q 015895           90 FSNMAVGY----NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-------WLPNLF  158 (398)
Q Consensus        90 i~~~g~G~----d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~-------w~~~~~  158 (398)
                      |++.|+|+    ||||+++|+++||.|+|+||+ +.+||||+++++|++.|+++.+++.+++|.|..       |.+...
T Consensus        75 I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~  153 (352)
T 3gg9_A           75 ISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFG  153 (352)
T ss_dssp             EEESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTT
T ss_pred             EEEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccc
Confidence            99999999    999999999999999999999 999999999999999999999999999999753       333335


Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .|.+|+||||||||+|.||+.+|+++ ++|||+|++||++......          ...+     +....+++|++++||
T Consensus       154 ~~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~----------~~~g-----~~~~~~l~ell~~aD  217 (352)
T 3gg9_A          154 IGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVLVWGRENSKERA----------RADG-----FAVAESKDALFEQSD  217 (352)
T ss_dssp             SBCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSHHHHHHH----------HHTT-----CEECSSHHHHHHHCS
T ss_pred             cCccCCCCEEEEEeECHHHHHHHHHH-HhCCCEEEEECCCCCHHHH----------HhcC-----ceEeCCHHHHHhhCC
Confidence            68999999999999999999999997 7999999999998643211          1112     233458999999999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEE
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIV  317 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvil  317 (398)
                      +|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+|+||+||||++||++ ++|||++|||++
T Consensus       218 iV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvil  297 (352)
T 3gg9_A          218 VLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC  297 (352)
T ss_dssp             EEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEE
T ss_pred             EEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999986 579999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       318 TPHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      |||+|++|.++++++...+++|+.+|++|+|. |.||
T Consensus       298 TPHia~~t~e~~~~~~~~~~~ni~~~~~G~p~-~~Vn  333 (352)
T 3gg9_A          298 TPHIGYVERESYEMYFGIAFQNILDILQGNVD-SVAN  333 (352)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCT-TBSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-cccC
Confidence            99999999999999999999999999999875 8885

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=8e-67  Score=514.51  Aligned_cols=307  Identities=20%  Similarity=0.231  Sum_probs=267.5

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHH-HHhhccCCceEEEe
Q 015895           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLF-AALSRAGGKAFSNM   93 (398)
Q Consensus        15 ~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l-~~~~~l~~k~i~~~   93 (398)
                      +||||++++++++ +++.|++.++++++....+  .+.+++    . ++|+++++.. ++ ++++ +++|+|  |+|++.
T Consensus         1 m~kil~~~~~~~~-~~~~L~~~~~~~~~~~~~~--~~~~~~----~-~ad~l~~~~~-~~-~~~l~~~~~~L--k~I~~~   68 (324)
T 3evt_A            1 MSLVLMAQATKPE-QLQQLQTTYPDWTFKDAAA--VTAADY----D-QIEVMYGNHP-LL-KTILARPTNQL--KFVQVI   68 (324)
T ss_dssp             -CEEEECSCCCHH-HHHHHHHHCTTCEEEETTS--CCTTTG----G-GEEEEESCCT-HH-HHHHHSTTCCC--CEEECS
T ss_pred             CcEEEEecCCCHH-HHHHHHhhCCCeEEecCCc--cChHHh----C-CcEEEEECCc-Ch-HHHHHhhCCCc--eEEEEC
Confidence            3789999999985 8999998766555443221  333443    2 4899988764 46 8888 688988  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHH-HHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA-DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~-~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (398)
                      |+|+|+||+++|+++||.|+|+||+++.+||||+++++|+++|+++++ ++.+++|.|.   +.. .+.+++||||||||
T Consensus        69 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~---~~~-~~~~l~gktvGIiG  144 (324)
T 3evt_A           69 SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWA---LPM-TTSTLTGQQLLIYG  144 (324)
T ss_dssp             SSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSS---CSS-CCCCSTTCEEEEEC
T ss_pred             CccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcc---cCC-CCccccCCeEEEEC
Confidence            999999999999999999999999999999999999999999999999 9999999854   332 57899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      +|+||+.+|+++ ++|||+|++||+++....              . ... .....++++++++||+|++|+|+|++|++
T Consensus       145 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~-~~~-~~~~~~l~ell~~aDvV~l~lPlt~~t~~  207 (324)
T 3evt_A          145 TGQIGQSLAAKA-SALGMHVIGVNTTGHPAD--------------H-FHE-TVAFTATADALATANFIVNALPLTPTTHH  207 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEEESSCCCCT--------------T-CSE-EEEGGGCHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HhCCCEEEEECCCcchhH--------------h-Hhh-ccccCCHHHHHhhCCEEEEcCCCchHHHH
Confidence            999999999997 799999999999864310              0 000 11235799999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      +|+++.|+.||+|++|||+|||+++|++||+++|++|+++||+||||++||++ ++|||++|||++|||+|++|.+++++
T Consensus       208 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~  287 (324)
T 3evt_A          208 LFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRAT  287 (324)
T ss_dssp             CBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHH
T ss_pred             hcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999976 47999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCC-CCCCCCC
Q 015895          332 MATLAALNVLGKIKGY-PIWGNPN  354 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~-~~~~~vn  354 (398)
                      ++..+++|+.+|++|+ ++.|.||
T Consensus       288 ~~~~~~~nl~~~l~~~~~~~n~V~  311 (324)
T 3evt_A          288 VFPIFAANFAQFVKDGTLVRNQVD  311 (324)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSCBCC
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEC
Confidence            9999999999999764 6889995

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=2.3e-66  Score=516.15  Aligned_cols=311  Identities=22%  Similarity=0.245  Sum_probs=270.5

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCceEEEe
Q 015895           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~--~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      +++|..++.... ..+.|++.|+++.+.....  .+.+++.+.+.+ +|++|+++  ..++++++++++|+|  |+|++.
T Consensus        20 ~~~lg~~~~~l~-~~~~L~~~g~ev~~~~~~~--~~~~~~~~~~~~-ad~li~~~~~~~~~~~~~l~~~p~L--k~i~~~   93 (351)
T 3jtm_A           20 PNFLGCVENALG-IRDWLESQGHQYIVTDDKE--GPDCELEKHIPD-LHVLISTPFHPAYVTAERIKKAKNL--KLLLTA   93 (351)
T ss_dssp             TTCCSSTTTGGG-CHHHHHHTTCEEEEESCCS--STTSHHHHHTTT-CSEEEECTTSCCCBCHHHHHHCSSC--CEEEES
T ss_pred             CCEEEeccchHH-HHHHHHHCCCEEEEeCCCC--CCHHHHHHHhCC-CEEEEEccCCCCCCCHHHHhhCCCC--eEEEEe
Confidence            456666554432 5678888899987764432  356688888875 99999875  357999999999988  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|++.++++.+++|.|.. ......+.+|+||||||||+
T Consensus        94 g~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~gktvGIIG~  172 (351)
T 3jtm_A           94 GIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV-AGIAYRAYDLEGKTIGTVGA  172 (351)
T ss_dssp             SSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCH-HHHHTTCCCSTTCEEEEECC
T ss_pred             CeeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCcc-ccccCCcccccCCEEeEEEe
Confidence            99999999999999999999999999999999999999999999999999999998531 11112467999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (398)
Q Consensus       174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l  253 (398)
                      |+||+.+|+++ ++|||+|++||+++.+....         ...+     +....+++|++++||+|++|+|+|++|+++
T Consensus       173 G~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~---------~~~g-----~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  237 (351)
T 3jtm_A          173 GRIGKLLLQRL-KPFGCNLLYHDRLQMAPELE---------KETG-----AKFVEDLNEMLPKCDVIVINMPLTEKTRGM  237 (351)
T ss_dssp             SHHHHHHHHHH-GGGCCEEEEECSSCCCHHHH---------HHHC-----CEECSCHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEeCCCccCHHHH---------HhCC-----CeEcCCHHHHHhcCCEEEECCCCCHHHHHh
Confidence            99999999997 79999999999986332110         0112     233468999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCCcHHHHHHH
Q 015895          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGM  332 (398)
Q Consensus       254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~T~ea~~~~  332 (398)
                      |+++.|+.||+|++|||+|||+++|++||+++|++|+++||+||||++||++. +|||++|||++|||+|+.|.+++.++
T Consensus       238 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~  317 (351)
T 3jtm_A          238 FNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRY  317 (351)
T ss_dssp             BSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHH
T ss_pred             hcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999764 79999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 015895          333 ATLAALNVLGKIKGYP  348 (398)
Q Consensus       333 ~~~~~~ni~~~l~g~~  348 (398)
                      +..+++|+.+|++|++
T Consensus       318 ~~~~~~nl~~~~~g~~  333 (351)
T 3jtm_A          318 AAGTKDMLERYFKGED  333 (351)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            9999999999999996

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-65  Score=507.69  Aligned_cols=310  Identities=29%  Similarity=0.442  Sum_probs=271.9

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      +++|||+++++++. ..+.|++.++++....    ..+++++.+.+.+ +|++++++.+++++++++++|+|  |+|++.
T Consensus        25 ~~~~vli~~~~~~~-~~~~l~~~~~~v~~~~----~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~~~   96 (335)
T 2g76_A           25 NLRKVLISDSLDPC-CRKILQDGGLQVVEKQ----NLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVGRA   96 (335)
T ss_dssp             -CCEEEECSCCCHH-HHHHHHHHTCEEEECC----SCCHHHHHHHGGG-CSEEEECSSSCBCHHHHHHCSSC--CEEEES
T ss_pred             cceEEEEcCCCCHH-HHHHHHhCCCEEEECC----CCCHHHHHHHhcC-ceEEEEcCCCCCCHHHHhhCCCC--cEEEEC
Confidence            34689999988764 6788877776765432    2578898888874 99999998888999999999988  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|+++++++.+++|.|   .+..+.|.+++|+||||||+
T Consensus        97 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W---~~~~~~~~~l~g~tvgIIGl  173 (335)
T 2g76_A           97 GTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKW---ERKKFMGTELNGKTLGILGL  173 (335)
T ss_dssp             SSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC---CTGGGCBCCCTTCEEEEECC
T ss_pred             CCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCC---CccCCCCcCCCcCEEEEEeE
Confidence            999999999999999999999999999999999999999999999999999999984   44445678999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (398)
Q Consensus       174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l  253 (398)
                      |+||+.+|+++ ++|||+|++|||+..+....          ..+     .. ..++++++++||+|++|+|++++|+++
T Consensus       174 G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~~g-----~~-~~~l~ell~~aDvV~l~~P~t~~t~~l  236 (335)
T 2g76_A          174 GRIGREVATRM-QSFGMKTIGYDPIISPEVSA----------SFG-----VQ-QLPLEEIWPLCDFITVHTPLLPSTTGL  236 (335)
T ss_dssp             SHHHHHHHHHH-HTTTCEEEEECSSSCHHHHH----------HTT-----CE-ECCHHHHGGGCSEEEECCCCCTTTTTS
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCcchhhhh----------hcC-----ce-eCCHHHHHhcCCEEEEecCCCHHHHHh
Confidence            99999999997 79999999999987542111          112     11 248999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHH
Q 015895          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA  333 (398)
Q Consensus       254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~  333 (398)
                      |+++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||+.||+.++|||++|||++|||++++|.+++++++
T Consensus       237 i~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~  316 (335)
T 2g76_A          237 LNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCG  316 (335)
T ss_dssp             BCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHH
T ss_pred             hCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999777899999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCC
Q 015895          334 TLAALNVLGKIKGYPIWG  351 (398)
Q Consensus       334 ~~~~~ni~~~l~g~~~~~  351 (398)
                      ..+++|+.+|++|+++.|
T Consensus       317 ~~~~~nl~~~~~g~~~~n  334 (335)
T 2g76_A          317 EEIAVQFVDMVKGKSLTG  334 (335)
T ss_dssp             HHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCCCCC
Confidence            999999999999998765

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=1.4e-65  Score=512.32  Aligned_cols=312  Identities=22%  Similarity=0.324  Sum_probs=262.8

Q ss_pred             CCeEEEEeCCCCc-------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHH-HhcCCCcEEEecCCccccHHHHHHhhcc
Q 015895           14 GKYRVVSTKPMPG-------TRWINLLIEQDCRVEICTQKKTILSVEDIIA-LIGDKCDGVIGQLTEDWGETLFAALSRA   85 (398)
Q Consensus        14 ~~~kvlv~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~-~~~~~~d~vi~~~~~~~~~~~l~~~~~l   85 (398)
                      +.+++++..+.+.       ++..+.|++. +++....    ..+++|+.+ .+. ++++++..  +++++++++++|+|
T Consensus        26 ~~r~ivll~~~~~~~~~~~~~~~~~~L~~~-~~v~~~~----~~~~~e~~~~~~~-~~~~i~~~--~~i~~~~l~~~p~L   97 (365)
T 4hy3_A           26 TERPLAISAPEPRSLDLIFSDEARAALHSK-YEIVEAD----PENIAGLGDDILG-RARYIIGQ--PPLSAETLARMPAL   97 (365)
T ss_dssp             --CCEEEEECTTSCHHHHCCHHHHHHHHHH-SEEEECC----GGGGGGSCTTHHH-HEEEEEEC--CCCCHHHHTTCTTC
T ss_pred             CCCCEEEEcCCcccccccCCHHHHHHHhCC-cEEEECC----CCChHHHHHHhhC-CeEEEEeC--CCCCHHHHhhCCCC
Confidence            3456777665532       2256778765 5654321    124455443 333 37777753  68999999999998


Q ss_pred             CCceEEEe-eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCC-ccccccc
Q 015895           86 GGKAFSNM-AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN-LFVGNLL  163 (398)
Q Consensus        86 ~~k~i~~~-g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~-~~~g~~l  163 (398)
                        |+|++. |+|+||||+++|+++||.|+|+|++++.+||||+++++|+++|+++++++.+++|+|. |... .+.|.+|
T Consensus        98 --k~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~-w~~~~~~~~~~l  174 (365)
T 4hy3_A           98 --RSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTEL-WGGEGNASARLI  174 (365)
T ss_dssp             --CEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCC-CSSSSTTSCCCS
T ss_pred             --eEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcc-cccccccccccc
Confidence              999975 8999999999999999999999999999999999999999999999999999999975 6543 3467899


Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      +||||||||+|+||+.+|+++ ++|||+|++|||+.......          ..+     +. ..+++|++++||+|++|
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g-----~~-~~~l~ell~~aDvV~l~  237 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVL-SGFRARIRVFDPWLPRSMLE----------ENG-----VE-PASLEDVLTKSDFIFVV  237 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHH-TTSCCEEEEECSSSCHHHHH----------HTT-----CE-ECCHHHHHHSCSEEEEC
T ss_pred             CCCEEEEecCCcccHHHHHhh-hhCCCEEEEECCCCCHHHHh----------hcC-----ee-eCCHHHHHhcCCEEEEc
Confidence            999999999999999999997 89999999999986432111          112     22 35899999999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIA  322 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia  322 (398)
                      +|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+ |+||||++||++ ++|||++|||++|||+|
T Consensus       238 ~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia  316 (365)
T 4hy3_A          238 AAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRA  316 (365)
T ss_dssp             SCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCS
T ss_pred             CcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccc
Confidence            9999999999999999999999999999999999999999999999998 899999999975 57999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          323 SASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      ++|.+++++++..+++|+.+|++|+++.+.+|
T Consensus       317 ~~t~e~~~~~~~~~~~ni~~~~~G~~~~~~vn  348 (365)
T 4hy3_A          317 GALDSAFKKMGDMVLEDMDLMDRGLPPMRCKR  348 (365)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHTTCCCCSSEE
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence            99999999999999999999999999999885

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=5e-64  Score=492.56  Aligned_cols=309  Identities=38%  Similarity=0.582  Sum_probs=278.1

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (398)
                      +|||++.++++. ..+.|++.++++++....  ..+.+++.+.+.+ +|+++++..+++++++++++|+|  |+|++.|+
T Consensus         1 ~~vl~~~~~~~~-~~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~i~~~~~   74 (311)
T 2cuk_A            1 MRVLVTRTLPGK-ALDRLRERGLEVEVHRGL--FLPKAELLKRVEG-AVGLIPTVEDRIDAEVMDRAKGL--KVIACYSV   74 (311)
T ss_dssp             CEEEESSCCSSS-TTHHHHHTTCEEEECCSS--CCCHHHHHHHHTT-CSEEECCTTSCBCHHHHHHSTTC--CEEECSSS
T ss_pred             CEEEEeCCCCHH-HHHHHHhcCCeEEEecCC--CCCHHHHHHHhcC-CeEEEEcCCCCCCHHHHhhCCCC--eEEEECCc
Confidence            578998888765 578888876777654322  3578888888875 99999988788999999999988  99999999


Q ss_pred             cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 015895           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (398)
Q Consensus        96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (398)
                      |+||||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|..|.+..+.|.+++|+||||||+|+
T Consensus        75 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           75 GVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             CCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             CccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999999999999999999999999999999999999999986665444567899999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhcc
Q 015895          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (398)
Q Consensus       176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~  255 (398)
                      ||+.+|+++ ++|||+|++|||+....                 .   . ...++++++++||+|++|+|++++|+++|+
T Consensus       155 IG~~~A~~l-~~~G~~V~~~d~~~~~~-----------------~---~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~  212 (311)
T 2cuk_A          155 IGQAVAKRA-LAFGMRVVYHARTPKPL-----------------P---Y-PFLSLEELLKEADVVSLHTPLTPETHRLLN  212 (311)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCSS-----------------S---S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCCccc-----------------c---c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcC
Confidence            999999997 79999999999976431                 0   1 235899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHHHHH
Q 015895          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMAT  334 (398)
Q Consensus       256 ~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~~~~  334 (398)
                      ++.|+.||+|+++||+|||+++|+++|.++|+ |+++||++|||++||++ ++|||++|||++|||++++|.+++.++..
T Consensus       213 ~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~  291 (311)
T 2cuk_A          213 RERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAE  291 (311)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999 99999999999999964 57999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCC
Q 015895          335 LAALNVLGKIKGYPIWGNP  353 (398)
Q Consensus       335 ~~~~ni~~~l~g~~~~~~v  353 (398)
                      .+++|+.+|++|+++.|.|
T Consensus       292 ~~~~nl~~~~~g~~~~~~v  310 (311)
T 2cuk_A          292 VAVENLLAVLEGREPPNPV  310 (311)
T ss_dssp             HHHHHHHHHHTTCCCSSBC
T ss_pred             HHHHHHHHHHcCCCCCCcc
Confidence            9999999999999877654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=5.5e-64  Score=524.62  Aligned_cols=343  Identities=29%  Similarity=0.369  Sum_probs=306.7

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEee
Q 015895           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (398)
Q Consensus        15 ~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (398)
                      +||||+++++++. +.+.|++. +++++..    ..+++++.+.+.+ +|++++++.+++++++++++|+|  |+|+++|
T Consensus         4 ~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~----~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~i~~~~   74 (529)
T 1ygy_A            4 LPVVLIADKLAPS-TVAALGDQ-VEVRWVD----GPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVARAG   74 (529)
T ss_dssp             CCEEEECSSCCGG-GGTTSCSS-SEEEECC----TTSHHHHHHHGGG-CSEEEECSSSCBCHHHHHTCTTC--CEEEESS
T ss_pred             CcEEEEeCCCCHH-HHHHHhcC-ceEEEcC----CCCHHHHHHHhcC-CEEEEEcCCCCCCHHHHhhCCCC--cEEEECC
Confidence            4689999988764 56777654 6666543    2578899988875 99999999899999999999988  9999999


Q ss_pred             ccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 015895           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (398)
Q Consensus        95 ~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG  174 (398)
                      +|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+   |.+..+.|.+++|+||||||+|
T Consensus        75 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~---w~~~~~~~~~l~g~~vgIIG~G  151 (529)
T 1ygy_A           75 VGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHT---WKRSSFSGTEIFGKTVGVVGLG  151 (529)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTC---CCGGGCCBCCCTTCEEEEECCS
T ss_pred             cCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCC---CcccCcCccccCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999998   5444567889999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhc
Q 015895          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (398)
Q Consensus       175 ~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li  254 (398)
                      +||+++|+++ ++|||+|++|||+.......          ..+     +.. .++++++++||+|++|+|++++|++++
T Consensus       152 ~IG~~vA~~l-~~~G~~V~~~d~~~~~~~a~----------~~g-----~~~-~~l~e~~~~aDvV~l~~P~~~~t~~~i  214 (529)
T 1ygy_A          152 RIGQLVAQRI-AAFGAYVVAYDPYVSPARAA----------QLG-----IEL-LSLDDLLARADFISVHLPKTPETAGLI  214 (529)
T ss_dssp             HHHHHHHHHH-HTTTCEEEEECTTSCHHHHH----------HHT-----CEE-CCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHHH----------hcC-----cEE-cCHHHHHhcCCEEEECCCCchHHHHHh
Confidence            9999999997 79999999999987432111          112     222 379999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHH
Q 015895          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT  334 (398)
Q Consensus       255 ~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~~  334 (398)
                      +++.++.||+|+++||++||+++|+++|+++|++|+++||++|||+.||..++|||+++|+++|||++++|.+++++++.
T Consensus       215 ~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~  294 (529)
T 1ygy_A          215 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGT  294 (529)
T ss_dssp             CHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHH
T ss_pred             CHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998788999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcce
Q 015895          335 LAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVC  391 (398)
Q Consensus       335 ~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (398)
                      .+++|+.+++.|+++.|.|| + |.   ++.++.+.||+.|++++|.++.|-+|+-.
T Consensus       295 ~~~~~l~~~l~~~~~~~~v~-~-~~---~~~hd~i~P~l~La~~lg~~~~qla~g~~  346 (529)
T 1ygy_A          295 DVAESVRLALAGEFVPDAVN-V-GG---GVVNEEVAPWLDLVRKLGVLAGVLSDELP  346 (529)
T ss_dssp             HHHHHHHHHHTTCCCTTBCS-C-CS---TTSCTTTTTHHHHHHHHHHHHHHTSSSCC
T ss_pred             HHHHHHHHHHcCCCCCcccC-C-cc---cccchhhhhHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999994 4 42   45788999999999999999999988743

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1.3e-64  Score=500.77  Aligned_cols=313  Identities=20%  Similarity=0.284  Sum_probs=271.3

Q ss_pred             eEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEE
Q 015895           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (398)
Q Consensus        16 ~kvlv~~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~   92 (398)
                      |||++++  +... .+++.|.+ .++++.....   ..+++++.+.+. ++|++++++.+++++++++++|+.++|+|++
T Consensus         1 mki~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   75 (331)
T 1xdw_A            1 MKVLCYGVRDVEL-PIFEACNKEFGYDIKCVPD---YLNTKETAEMAA-GFDAVILRGNCFANKQNLDIYKKLGVKYILT   75 (331)
T ss_dssp             CEEEECSCCTTTH-HHHHHHGGGTCCEEEECSC---CSCSHHHHHTTT-TCSEEEECTTCCBCHHHHHHHHHHTCCEEEE
T ss_pred             CEEEEEecCccCH-HHHHHHHHhcCeEEEECCC---CCCHHHHHHHhc-CCeEEEEeCCCCCCHHHHhhCcccCceEEEE
Confidence            5788854  4433 46777754 4555544321   235577777766 4999999988899999999999834499999


Q ss_pred             eeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 015895           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (398)
Q Consensus        93 ~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (398)
                      .|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|. |. ....|.++.|+||||||
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~-~~~~~~~l~g~~vgIiG  153 (331)
T 1xdw_A           76 RTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK-VD-AFMFSKEVRNCTVGVVG  153 (331)
T ss_dssp             SSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC-CC-STTCCCCGGGSEEEEEC
T ss_pred             ccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc-cc-cCcCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999974 52 22467899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      +|+||+.+|+++ ++|||+|++||++.....+                . .. ...++++++++||+|++|+|+|++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~----------------~-~~-~~~~l~ell~~aDvV~~~~p~t~~t~~  214 (331)
T 1xdw_A          154 LGRIGRVAAQIF-HGMGATVIGEDVFEIKGIE----------------D-YC-TQVSLDEVLEKSDIITIHAPYIKENGA  214 (331)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCSCT----------------T-TC-EECCHHHHHHHCSEEEECCCCCTTTCC
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCccHHHH----------------h-cc-ccCCHHHHHhhCCEEEEecCCchHHHH
Confidence            999999999997 7999999999998753210                0 01 234899999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC--C--------CC----CCCCC-CceEE
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--M--------KP----GLSEM-KNAIV  317 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~--~--------~~----~L~~~-~nvil  317 (398)
                      +|+++.|+.||+|+++||+|||+++|+++|+++|++|+|+||+||||++||+  +        ++    |||++ |||++
T Consensus       215 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvil  294 (331)
T 1xdw_A          215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLI  294 (331)
T ss_dssp             SBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEE
T ss_pred             HhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999994  1        12    69999 99999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       318 TPHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      |||+|++|.++++++...+++|+.+|++|+++.|.||
T Consensus       295 TPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  331 (331)
T 1xdw_A          295 TPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKIK  331 (331)
T ss_dssp             CCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTBCC
T ss_pred             cCccccChHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999999999888774

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.5e-63  Score=489.45  Aligned_cols=312  Identities=28%  Similarity=0.467  Sum_probs=276.1

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhc-cCCceEEEee
Q 015895           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSR-AGGKAFSNMA   94 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~-l~~k~i~~~g   94 (398)
                      +|||++.++++. ..+.|++. +++++... ....+++++.+.+.+ +|+++++..+++++++++++|+ |  |+|++.|
T Consensus         2 ~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~~L--k~I~~~~   75 (320)
T 1gdh_A            2 KKILITWPLPEA-AMARARES-YDVIAHGD-DPKITIDEMIETAKS-VDALLITLNEKCRKEVIDRIPENI--KCISTYS   75 (320)
T ss_dssp             CEEEESSCCCHH-HHHHHHTT-SEEEECCS-TTCCCHHHHHHHHTT-CSEEEEETTSCBCHHHHHHSCTTC--CEEEEES
T ss_pred             cEEEEcCCCCHH-HHHHHHhc-CCEEEecC-CCCCCHHHHHHHhcC-CEEEEECCCCCCCHHHHHhCCccc--eEEEECC
Confidence            578998888764 67788753 46655332 223578898888875 9999998877899999999998 7  9999999


Q ss_pred             ccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 015895           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (398)
Q Consensus        95 ~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG  174 (398)
                      +|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|..|.+..+.|.++.|+||||||+|
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  155 (320)
T 1gdh_A           76 IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG  155 (320)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             cccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcC
Confidence            99999999999999999999999999999999999999999999999999999998766554456789999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcC-ChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895          175 RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (398)
Q Consensus       175 ~IG~~vA~~la~~fG~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l  253 (398)
                      +||+.+|+++ ++|||+|++||+ +.......          ..+     .....++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~~----------~~g-----~~~~~~l~ell~~aDvVil~~p~~~~t~~~  219 (320)
T 1gdh_A          156 SIGQALAKRA-QGFDMDIDYFDTHRASSSDEA----------SYQ-----ATFHDSLDSLLSVSQFFSLNAPSTPETRYF  219 (320)
T ss_dssp             HHHHHHHHHH-HTTTCEEEEECSSCCCHHHHH----------HHT-----CEECSSHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCcChhhhh----------hcC-----cEEcCCHHHHHhhCCEEEEeccCchHHHhh
Confidence            9999999997 799999999999 77542111          112     222347999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHH
Q 015895          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA  333 (398)
Q Consensus       254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~  333 (398)
                      |+++.|+.||+|+++||+|||+++|+++|.++|++|+++||++|||+.||+.++|||++|||++|||++++|.++++++.
T Consensus       220 i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~  299 (320)
T 1gdh_A          220 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMA  299 (320)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHH
T ss_pred             cCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999666899999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCC
Q 015895          334 TLAALNVLGKIKGYPIW  350 (398)
Q Consensus       334 ~~~~~ni~~~l~g~~~~  350 (398)
                      ..+ +|+.+|++|+++.
T Consensus       300 ~~~-~nl~~~~~g~~~~  315 (320)
T 1gdh_A          300 HQA-NDLIDALFGGADM  315 (320)
T ss_dssp             HHH-HHHHHHHHTTSCC
T ss_pred             HHH-HHHHHHHcCCCCc
Confidence            999 9999999998764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=2.6e-64  Score=499.03  Aligned_cols=313  Identities=28%  Similarity=0.405  Sum_probs=269.8

Q ss_pred             eEEEEeCCCC-chHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEE
Q 015895           16 YRVVSTKPMP-GTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (398)
Q Consensus        16 ~kvlv~~~~~-~~~~~~~l~~~--~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~   92 (398)
                      |||++....+ +..+++.|++.  ++++......    ..+++.+.+. ++|+++++..+++++++++++|+.++|+|++
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   76 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LTPETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSL   76 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CCTTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----CcHHHHHHhc-CCcEEEEcCCCCCCHHHHHhccccCCeEEEE
Confidence            5788764322 23467777653  4566543221    2235555555 4999999887899999999999833499999


Q ss_pred             eeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 015895           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (398)
Q Consensus        93 ~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (398)
                      .|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|. |..  ..|.+++|+||||||
T Consensus        77 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~--~~~~~l~g~~vgIiG  153 (333)
T 1j4a_A           77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVG  153 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEEC
T ss_pred             CCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc-cCC--cccccCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999974 643  467899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      +|+||+.+|+++ ++|||+|++||++..+..+.            .     .....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvV~l~~p~~~~t~~  215 (333)
T 1j4a_A          154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK------------K-----GYYVDSLDDLYKQADVISLHVPDVPANVH  215 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH------------T-----TCBCSCHHHHHHHCSEEEECSCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhHHh------------h-----CeecCCHHHHHhhCCEEEEcCCCcHHHHH
Confidence            999999999997 79999999999987653211            1     11224799999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC--CC--------C----CCCCCCceEEc
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK--------P----GLSEMKNAIVV  318 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~--~~--------~----~L~~~~nvilT  318 (398)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+  +.        +    |||++|||++|
T Consensus       216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999993  21        2    59999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          319 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       319 PHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      ||+|++|.++++++...+++|+.+|++|+++.|.||
T Consensus       296 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  331 (333)
T 1j4a_A          296 PKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVK  331 (333)
T ss_dssp             SSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBCC
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Confidence            999999999999999999999999999999998884

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=6.2e-65  Score=503.38  Aligned_cols=312  Identities=25%  Similarity=0.379  Sum_probs=269.1

Q ss_pred             eEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEE
Q 015895           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (398)
Q Consensus        16 ~kvlv~~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~   92 (398)
                      |||++..  +... .+++.|.+ .++++.+....    ..+++.+.+. ++|++++++.+++++++++++|+.++|+|++
T Consensus         1 Mkil~~~~~~~~~-~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   74 (333)
T 1dxy_A            1 MKIIAYGARVDEI-QYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTI   74 (333)
T ss_dssp             CEEEECSCCTTTH-HHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEeccccCH-HHHHHHHHhCCeEEEEcCCC----ChHHHHHHhc-CCeEEEEcCCCCCCHHHHHhCcccCceEEEE
Confidence            5788754  3333 46777754 46666543321    2245555555 5999999988899999999999833499999


Q ss_pred             eeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 015895           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (398)
Q Consensus        93 ~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (398)
                      .|+|+||||+++|+++||.|+|+|++++.+||||++++||++.|+++++++.+++|.|. |. ....|.+++|+||||||
T Consensus        75 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~-~~~~~~~l~g~~vgIiG  152 (333)
T 1dxy_A           75 RNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE-KA-GTFIGKELGQQTVGVMG  152 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH-HH-TCCCCCCGGGSEEEEEC
T ss_pred             cCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc-cc-cCCCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999974 51 12467899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      +|+||+.+|+++ ++|||+|++||++.....                ... . ...++++++++||+|++|+|++++|++
T Consensus       153 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~----------------~~~-~-~~~~l~ell~~aDvV~~~~P~~~~t~~  213 (333)
T 1dxy_A          153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGD----------------HPD-F-DYVSLEDLFKQSDVIDLHVPGIEQNTH  213 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCSSC----------------CTT-C-EECCHHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhh----------------Hhc-c-ccCCHHHHHhcCCEEEEcCCCchhHHH
Confidence            999999999997 799999999999875320                000 1 234899999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC-----------CC---CCCCCCCceEEc
Q 015895          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-----------MK---PGLSEMKNAIVV  318 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~-----------~~---~~L~~~~nvilT  318 (398)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+           ++   +|||++|||++|
T Consensus       214 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~T  293 (333)
T 1dxy_A          214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS  293 (333)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEEC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999983           22   379999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          319 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       319 PHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      ||+|++|.+++++++..+++|+.+|++|+++.|.||
T Consensus       294 PHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (333)
T 1dxy_A          294 PHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVT  329 (333)
T ss_dssp             SSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTEEC
T ss_pred             CccccChHHHHHHHHHHHHHHHHHHHcCCCCCceeC
Confidence            999999999999999999999999999999999884

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.4e-63  Score=488.49  Aligned_cols=304  Identities=34%  Similarity=0.535  Sum_probs=270.7

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEee
Q 015895           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (398)
Q Consensus        15 ~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (398)
                      +|||++++++++. +.+.|++.++++...  .  ..+++++.+.+. ++|++++++.+++++++++++|+|  |+|++.|
T Consensus         3 ~~~il~~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   74 (307)
T 1wwk_A            3 RMKVLVAAPLHEK-AIQVLKDAGLEVIYE--E--YPDEDRLVELVK-DVEAIIVRSKPKVTRRVIESAPKL--KVIARAG   74 (307)
T ss_dssp             -CEEEECSCCCHH-HHHHHHHTTCEEEEC--S--SCCHHHHHHHST-TCSEEEESSCSCBCHHHHTTCTTC--CEEEESS
T ss_pred             ceEEEEeCCCCHH-HHHHHHhCCeEEEeC--C--CCCHHHHHHHhc-CCEEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence            5789999888764 678888777665431  1  257888888776 499999987778999999999988  9999999


Q ss_pred             ccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 015895           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (398)
Q Consensus        95 ~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG  174 (398)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|   .+..+.|.+++|+||||||+|
T Consensus        75 ~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w---~~~~~~~~~l~g~~vgIiG~G  151 (307)
T 1wwk_A           75 VGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVW---AKKEAMGIELEGKTIGIIGFG  151 (307)
T ss_dssp             SCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCC---CTTTCCBCCCTTCEEEEECCS
T ss_pred             ccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCC---CccCcCCcccCCceEEEEccC
Confidence            99999999999999999999999999999999999999999999999999999985   333346789999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhc
Q 015895          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (398)
Q Consensus       175 ~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li  254 (398)
                      +||+.+|+++ ++|||+|++||+++......          ..+     .. ..++++++++||+|++|+|++++|+++|
T Consensus       152 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~----------~~g-----~~-~~~l~ell~~aDvV~l~~p~~~~t~~li  214 (307)
T 1wwk_A          152 RIGYQVAKIA-NALGMNILLYDPYPNEERAK----------EVN-----GK-FVDLETLLKESDVVTIHVPLVESTYHLI  214 (307)
T ss_dssp             HHHHHHHHHH-HHTTCEEEEECSSCCHHHHH----------HTT-----CE-ECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCChhhHh----------hcC-----cc-ccCHHHHHhhCCEEEEecCCChHHhhhc
Confidence            9999999997 79999999999987652111          112     22 2489999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC-CCCCCCCCCceEEcCCCCCCcHHHHHHHH
Q 015895          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNAIVVPHIASASKWTREGMA  333 (398)
Q Consensus       255 ~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~-~~~~L~~~~nvilTPHia~~T~ea~~~~~  333 (398)
                      +++.|+.||+|+++||+|||+++|+++|+++|++|+++||+||||++||+ .++|||++|||++|||++++|.+++.++.
T Consensus       215 ~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~  294 (307)
T 1wwk_A          215 NEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAG  294 (307)
T ss_dssp             CHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHH
T ss_pred             CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 45799999999999999999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 015895          334 TLAALNVLGKIKG  346 (398)
Q Consensus       334 ~~~~~ni~~~l~g  346 (398)
                      ..+++|+.+|++|
T Consensus       295 ~~~~~nl~~~~~g  307 (307)
T 1wwk_A          295 VEVAEKVVKILKG  307 (307)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999976

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.6e-63  Score=487.86  Aligned_cols=305  Identities=26%  Similarity=0.444  Sum_probs=274.1

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEee
Q 015895           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (398)
Q Consensus        15 ~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (398)
                      +||||+++++++. +.+.|++.++++.. .   ...+++++.+.+.+ +|+++++..+++++++++++|+|  |+|++.|
T Consensus         5 ~mkil~~~~~~~~-~~~~l~~~~~~v~~-~---~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   76 (313)
T 2ekl_A            5 TVKALITDPIDEI-LIKTLREKGIQVDY-M---PEISKEELLNIIGN-YDIIVVRSRTKVTKDVIEKGKKL--KIIARAG   76 (313)
T ss_dssp             CCEEEECSCCCHH-HHHHHHHTTCEEEE-C---TTCCHHHHHHHGGG-CSEEEECSSSCBCHHHHHHCTTC--CEEEECS
T ss_pred             ceEEEEECCCCHH-HHHHHHhCCcEEEe-C---CCCCHHHHHHHhcC-CeEEEEcCCCCCCHHHHhhCCCC--eEEEEcC
Confidence            3689999988764 67888887766642 1   13578888888875 99999987778999999999988  9999999


Q ss_pred             ccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 015895           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (398)
Q Consensus        95 ~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG  174 (398)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|.     .+.+.++.|+||||||+|
T Consensus        77 ~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~-----~~~~~~l~g~~vgIIG~G  151 (313)
T 2ekl_A           77 IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK-----KIEGLELAGKTIGIVGFG  151 (313)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC-----CCCCCCCTTCEEEEESCS
T ss_pred             CCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC-----CCCCCCCCCCEEEEEeeC
Confidence            999999999999999999999999999999999999999999999999999999853     245789999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhc
Q 015895          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (398)
Q Consensus       175 ~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li  254 (398)
                      +||+.+|+++ ++|||+|++||+++......          ..+     ... .++++++++||+|++|+|++++|+++|
T Consensus       152 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~----------~~g-----~~~-~~l~ell~~aDvVvl~~P~~~~t~~li  214 (313)
T 2ekl_A          152 RIGTKVGIIA-NAMGMKVLAYDILDIREKAE----------KIN-----AKA-VSLEELLKNSDVISLHVTVSKDAKPII  214 (313)
T ss_dssp             HHHHHHHHHH-HHTTCEEEEECSSCCHHHHH----------HTT-----CEE-CCHHHHHHHCSEEEECCCCCTTSCCSB
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCcchhHHH----------hcC-----cee-cCHHHHHhhCCEEEEeccCChHHHHhh
Confidence            9999999997 79999999999987653111          112     222 489999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCC---CCCCCCceEEcCCCCCCcHHHHHH
Q 015895          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       255 ~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~---~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      +++.|+.||+|+++||+|||+++|+++|.++|++|+++||+||||++||++++   |||++|||++|||++++|.+++++
T Consensus       215 ~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~  294 (313)
T 2ekl_A          215 DYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR  294 (313)
T ss_dssp             CHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHH
T ss_pred             CHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999998877   999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCC
Q 015895          332 MATLAALNVLGKIKGYPI  349 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~  349 (398)
                      +...+++|+.+|++|+++
T Consensus       295 ~~~~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          295 VAEMTTQNLLNAMKELGM  312 (313)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCCC
Confidence            999999999999999886

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=1.5e-63  Score=501.97  Aligned_cols=305  Identities=22%  Similarity=0.218  Sum_probs=265.2

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCceEEEeeccccccCchHhh
Q 015895           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (398)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~  106 (398)
                      +.+.|++.++++.+....  ..+.+++.+.+.+ +|+++++.  .+++++++++++|+|  |+|++.|+|+||||+++|+
T Consensus        59 ~~~~l~~~g~~v~~~~~~--~~~~~~l~~~l~~-ad~li~~~~~~~~i~~~~l~~~p~L--k~I~~~g~G~d~iD~~aa~  133 (393)
T 2nac_A           59 LRKYLESNGHTLVVTSDK--DGPDSVFERELVD-ADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAI  133 (393)
T ss_dssp             CHHHHHHTTCEEEEESCC--SSTTSHHHHHHTT-CSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHhCCCEEEEecCC--CCCHHHHHHhccC-CCEEEEcCccCCCCCHHHHhhCCCC--cEEEEcCccccccCHHHHh
Confidence            345778778777654322  1244578777774 99999864  457999999999988  9999999999999999999


Q ss_pred             hcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 015895          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (398)
Q Consensus       107 ~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~  186 (398)
                      ++||.|+|+|++++.+||||++++||++.|++.++++.+++|.|.. ......+.+|+||||||||+|+||+.+|+++ +
T Consensus       134 ~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l-~  211 (393)
T 2nac_A          134 DRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNI-ADCVSHAYDLEAMHVGTVAAGRIGLAVLRRL-A  211 (393)
T ss_dssp             HTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH-HHHHTTCCCCTTCEEEEECCSHHHHHHHHHH-G
T ss_pred             cCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCc-cccccCCccCCCCEEEEEeECHHHHHHHHHH-H
Confidence            9999999999999999999999999999999999999999998531 1111246799999999999999999999997 7


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCc
Q 015895          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (398)
Q Consensus       187 ~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~ga  266 (398)
                      +|||+|++||++.......         ...+     .....++++++++||+|++|+|+|++|+++|+++.|+.||+|+
T Consensus       212 a~G~~V~~~d~~~~~~~~~---------~~~G-----~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga  277 (393)
T 2nac_A          212 PFDVHLHYTDRHRLPESVE---------KELN-----LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA  277 (393)
T ss_dssp             GGTCEEEEECSSCCCHHHH---------HHHT-----CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTE
T ss_pred             hCCCEEEEEcCCccchhhH---------hhcC-----ceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCC
Confidence            9999999999986432110         0011     2223579999999999999999999999999999999999999


Q ss_pred             EEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 015895          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK  345 (398)
Q Consensus       267 ilIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~  345 (398)
                      +|||+|||+++|+++|+++|++|+|.||+||||++||++ ++|||++|||++|||+|+.|.+++.+++..+++|+.+|++
T Consensus       278 ilIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~  357 (393)
T 2nac_A          278 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFE  357 (393)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999975 5799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q 015895          346 GYPIWGNPN  354 (398)
Q Consensus       346 g~~~~~~vn  354 (398)
                      |+++.|.++
T Consensus       358 G~~~~~~~~  366 (393)
T 2nac_A          358 GRPIRDEYL  366 (393)
T ss_dssp             TCCCCGGGE
T ss_pred             CCCCcceeE
Confidence            999988874

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=5.9e-63  Score=485.34  Aligned_cols=302  Identities=20%  Similarity=0.235  Sum_probs=258.3

Q ss_pred             CCCeEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEE
Q 015895           13 NGKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (398)
Q Consensus        13 ~~~~kvlv~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~   91 (398)
                      ++.||||+..+.. ++.|.+.|++..+++++....+     ++    . .++|+++++.   .+++++++ |+|  |+|+
T Consensus         1 ~~~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~-~~ad~~i~~~---~~~~~l~~-~~L--k~I~   64 (315)
T 3pp8_A            1 SNAMEIIFYHPTFNAAWWVNALEKALPHARVREWKV-----GD----N-NPADYALVWQ---PPVEMLAG-RRL--KAVF   64 (315)
T ss_dssp             CCCEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT-----TC----C-SCCSEEEESS---CCHHHHTT-CCC--SEEE
T ss_pred             CCceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC-----CC----c-cCcEEEEECC---CCHHHhCC-CCc--eEEE
Confidence            4669999987754 3458888887655665543221     11    1 2599999985   46899999 987  9999


Q ss_pred             Eeecccccc-C-chH---hhhcCceEEecCCCC-CchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCC
Q 015895           92 NMAVGYNNV-D-VNA---ANKYGIAVGNTPGVL-TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (398)
Q Consensus        92 ~~g~G~d~i-D-~~~---~~~~gI~V~n~p~~~-~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~g  165 (398)
                      +.|+|+||| | +++   +.++||.|+|+|+++ +.+||||+++++|++.|+++++++.+++|.|..   .  .+.+++|
T Consensus        65 ~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~--~~~~l~g  139 (315)
T 3pp8_A           65 VLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKP---L--PEYTREE  139 (315)
T ss_dssp             ESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC---C--CCCCSTT
T ss_pred             ECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCC---C--CCCCcCC
Confidence            999999999 7 887   788999999999874 799999999999999999999999999998543   2  4689999


Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      |||||||+|+||+.+|+++ ++|||+|++||+++... +             +..  ......+++|++++||+|++|+|
T Consensus       140 ~tvGIiG~G~IG~~vA~~l-~~~G~~V~~~dr~~~~~-~-------------~~~--~~~~~~~l~ell~~aDiV~l~~P  202 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESL-QAWGFPLRCWSRSRKSW-P-------------GVE--SYVGREELRAFLNQTRVLINLLP  202 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HTTTCCEEEEESSCCCC-T-------------TCE--EEESHHHHHHHHHTCSEEEECCC
T ss_pred             CEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCchhh-h-------------hhh--hhcccCCHHHHHhhCCEEEEecC
Confidence            9999999999999999997 79999999999976531 0             000  01112479999999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASA  324 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~~  324 (398)
                      +|++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+++||+||||++||++. +|||++|||++|||+|+.
T Consensus       203 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~  282 (315)
T 3pp8_A          203 NTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAV  282 (315)
T ss_dssp             CCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSC
T ss_pred             CchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999864 799999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          325 SKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       325 T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      |.+  +++...+++|+.+|++|+++.|.||
T Consensus       283 t~~--~~~~~~~~~ni~~~~~G~~~~~~V~  310 (315)
T 3pp8_A          283 TRP--AEAIDYISRTITQLEKGEPVTGQVD  310 (315)
T ss_dssp             CCH--HHHHHHHHHHHHHHHHTCCCCCBCC
T ss_pred             cHH--HHHHHHHHHHHHHHHcCCCCCceEC
Confidence            985  5799999999999999999999985

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=5.2e-64  Score=502.15  Aligned_cols=318  Identities=21%  Similarity=0.219  Sum_probs=272.2

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCceEE
Q 015895           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFS   91 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~--~~~~~~~~l~~~~~l~~k~i~   91 (398)
                      .+.+||+.++..+. ..+.|++.++++.+....  ..+.+++.+.+.+ +|+++++.  .+++++++++++|+|  |+|+
T Consensus        16 ~~~~vl~~d~~~~~-~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~l~~~~~L--k~I~   89 (364)
T 2j6i_A           16 DEEKLYGCTENKLG-IANWLKDQGHELITTSDK--EGGNSVLDQHIPD-ADIIITTPFHPAYITKERIDKAKKL--KLVV   89 (364)
T ss_dssp             HCTTCTTBTTTGGG-CHHHHHHTTCEEEEESCC--SSTTSHHHHHGGG-CSEEEECTTSCCCBCHHHHHHCTTC--CEEE
T ss_pred             cCceEEEecCccHH-HHHHHHhCCCEEEEcCCC--CCCHHHHHHHhhC-CeEEEecCcCCCCCCHHHHhhCCCC--eEEE
Confidence            45668888776653 567788878887655422  2346778888775 99999864  346899999999988  9999


Q ss_pred             EeeccccccCchHhhhc--CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 015895           92 NMAVGYNNVDVNAANKY--GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (398)
Q Consensus        92 ~~g~G~d~iD~~~~~~~--gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG  169 (398)
                      +.|+|+||||+++|+++  ||.|+|+|++++.+||||++++||++.|+++++++.+++|.|. |......+.+|+|+|||
T Consensus        90 ~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~-~~~~~~~~~~l~g~tvg  168 (364)
T 2j6i_A           90 VAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWE-VAAIAKDAYDIEGKTIA  168 (364)
T ss_dssp             ESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHTTCCCSTTCEEE
T ss_pred             ECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCC-cCcccCCcccCCCCEEE
Confidence            99999999999999999  9999999999999999999999999999999999999999853 11111246799999999


Q ss_pred             EEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCh
Q 015895          170 VIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (398)
Q Consensus       170 IIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~  248 (398)
                      |||+|+||+.+|+++ ++|||+ |++||++..+....         ...     +.....++++++++||+|++|+|+|+
T Consensus       169 IIG~G~IG~~vA~~l-~~~G~~~V~~~d~~~~~~~~~---------~~~-----g~~~~~~l~ell~~aDvV~l~~P~t~  233 (364)
T 2j6i_A          169 TIGAGRIGYRVLERL-VPFNPKELLYYDYQALPKDAE---------EKV-----GARRVENIEELVAQADIVTVNAPLHA  233 (364)
T ss_dssp             EECCSHHHHHHHHHH-GGGCCSEEEEECSSCCCHHHH---------HHT-----TEEECSSHHHHHHTCSEEEECCCCST
T ss_pred             EECcCHHHHHHHHHH-HhCCCcEEEEECCCccchhHH---------Hhc-----CcEecCCHHHHHhcCCEEEECCCCCh
Confidence            999999999999997 799997 99999876332110         011     12233589999999999999999999


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCC--C---ceEEcCCCC
Q 015895          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM--K---NAIVVPHIA  322 (398)
Q Consensus       249 ~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~--~---nvilTPHia  322 (398)
                      +|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++ ++|||.+  |   ||++|||+|
T Consensus       234 ~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia  313 (364)
T 2j6i_A          234 GTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYS  313 (364)
T ss_dssp             TTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCG
T ss_pred             HHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccC
Confidence            999999999999999999999999999999999999999999999999999999975 4799999  9   999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 015895          323 SASKWTREGMATLAALNVLGKIKGYPIWGNP  353 (398)
Q Consensus       323 ~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~v  353 (398)
                      ++|.+++.+++..+++|+.+|++|+++...+
T Consensus       314 ~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~~  344 (364)
T 2j6i_A          314 GTTLDAQTRYAQGTVNILESFFTGKFDYRPQ  344 (364)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHTTCCCCCGG
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999999999999999999444444

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=3.1e-62  Score=483.76  Aligned_cols=310  Identities=29%  Similarity=0.441  Sum_probs=274.2

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHH-HHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVED-IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        15 ~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ee-l~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      +++||+++++++. +.+.|++. +++..... .  .+.++ +.+.+. ++|++++++.+++++++++++|+|  |+|++.
T Consensus        23 ~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~-~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~   94 (333)
T 3ba1_A           23 AIGVLMMCPMSTY-LEQELDKR-FKLFRYWT-Q--PAQRDFLALQAE-SIRAVVGNSNAGADAELIDALPKL--EIVSSF   94 (333)
T ss_dssp             CCEEEECSCCCHH-HHHHHHHH-SEEEEGGG-C--SSHHHHHHHHTT-TEEEEEECSSSCBCHHHHHHCTTC--CEEEES
T ss_pred             CCEEEEeCCCCHH-HHHHHHhc-CCEEEecC-C--CChHHHHHHHhC-CCEEEEEcCCCCCCHHHHhhCCCC--cEEEEc
Confidence            4689999988764 67888764 45544321 1  24555 555555 599999988888999999999988  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|. | .....|.+++||+|||||+
T Consensus        95 ~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~-~~~~~~~~l~g~~vgIIG~  172 (333)
T 3ba1_A           95 SVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-F-GDFKLTTKFSGKRVGIIGL  172 (333)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGG-G-CCCCCCCCCTTCCEEEECC
T ss_pred             CccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC-c-cccccccccCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999964 2 1223578999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhh
Q 015895          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (398)
Q Consensus       174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~l  253 (398)
                      |+||+.+|+++ ++|||+|++||+++...              .     ++....++++++++||+|++|+|++++|+++
T Consensus       173 G~iG~~vA~~l-~~~G~~V~~~dr~~~~~--------------~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~l  232 (333)
T 3ba1_A          173 GRIGLAVAERA-EAFDCPISYFSRSKKPN--------------T-----NYTYYGSVVELASNSDILVVACPLTPETTHI  232 (333)
T ss_dssp             SHHHHHHHHHH-HTTTCCEEEECSSCCTT--------------C-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCchhc--------------c-----CceecCCHHHHHhcCCEEEEecCCChHHHHH
Confidence            99999999997 79999999999986431              0     1223468999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHH
Q 015895          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA  333 (398)
Q Consensus       254 i~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~  333 (398)
                      ++++.++.||+|++|||++||.++|+++|.++|++|+++||++|||++||.+.+|||++|||++|||+|+.|.+++++++
T Consensus       233 i~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~  312 (333)
T 3ba1_A          233 INREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMA  312 (333)
T ss_dssp             BCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHH
T ss_pred             hhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999877899999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCC
Q 015895          334 TLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       334 ~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      ..+++|+.+|++|+++.|.||
T Consensus       313 ~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          313 DLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             HHHHHHHHHHHHTCCCSSBCC
T ss_pred             HHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999988874

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=1.6e-61  Score=478.44  Aligned_cols=322  Identities=33%  Similarity=0.463  Sum_probs=282.5

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-hccCCce
Q 015895           12 PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKA   89 (398)
Q Consensus        12 ~~~~~kvlv~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~-~~l~~k~   89 (398)
                      |+++||||+++++++. +.+.|++. ++++.... .....+++++.+.+.+ +|+++++..+++++++++++ |+|  |+
T Consensus         5 ~~~~~~il~~~~~~~~-~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~l~~~~~~L--k~   79 (330)
T 2gcg_A            5 PVRLMKVFVTRRIPAE-GRVALARAADCEVEQWD-SDEPIPAKELERGVAG-AHGLLCLLSDHVDKRILDAAGANL--KV   79 (330)
T ss_dssp             --CCEEEEESSCCCHH-HHHHHHHCTTEEEEECC-SSSCCCHHHHHHHHTT-CSEEEECTTSCBCHHHHHHHCTTC--CE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHHhcCCceEEEec-CCCCCCHHHHHHHhcC-CeEEEECCCCCCCHHHHHhcCCCc--eE
Confidence            5677899999888764 78888775 35655432 2223578899888874 99999987788999999999 987  99


Q ss_pred             EEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 015895           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (398)
Q Consensus        90 i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG  169 (398)
                      |++.|+|+|+||+++++++||.|+|+||+++.+||||+++++|+++|+++++++.+++|.|..|.+..+.|.++.|++||
T Consensus        80 I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vg  159 (330)
T 2gcg_A           80 ISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVG  159 (330)
T ss_dssp             EEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEE
T ss_pred             EEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999987775544567899999999


Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh
Q 015895          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (398)
Q Consensus       170 IIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~  249 (398)
                      |||+|.||+.+|+++ +++|++|++||++.......         ...     +... .++++++++||+|++|+|.+++
T Consensus       160 IIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~---------~~~-----g~~~-~~l~e~l~~aDvVi~~vp~~~~  223 (330)
T 2gcg_A          160 IIGLGRIGQAIARRL-KPFGVQRFLYTGRQPRPEEA---------AEF-----QAEF-VSTPELAAQSDFIVVACSLTPA  223 (330)
T ss_dssp             EECCSHHHHHHHHHH-GGGTCCEEEEESSSCCHHHH---------HTT-----TCEE-CCHHHHHHHCSEEEECCCCCTT
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCcchhHH---------Hhc-----Ccee-CCHHHHHhhCCEEEEeCCCChH
Confidence            999999999999997 79999999999876432110         011     1222 3899999999999999999999


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceEEcCCCCCCcHHH
Q 015895          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWT  328 (398)
Q Consensus       250 T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvilTPHia~~T~ea  328 (398)
                      |+++++++.++.||+|+++||+|||+++|+++|.++|++|++.||++|||++||++ ++|||+++||++|||+|+.|.++
T Consensus       224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~  303 (330)
T 2gcg_A          224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRT  303 (330)
T ss_dssp             TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHH
T ss_pred             HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999964 57999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          329 REGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       329 ~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      ++++...+++|+.++++|+++.|.||
T Consensus       304 ~~~~~~~~~~n~~~~~~g~~~~~~v~  329 (330)
T 2gcg_A          304 RNTMSLLAANNLLAGLRGEPMPSELK  329 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCTTEEC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999988884

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=6.2e-61  Score=475.00  Aligned_cols=317  Identities=39%  Similarity=0.627  Sum_probs=280.4

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEee
Q 015895           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (398)
Q Consensus        15 ~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (398)
                      ++|||++.++++. +.+.|++. +++++... ....+++++.+.+.+ +|+++++..+++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~~-~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~l~~~~~L--k~I~~~~   75 (334)
T 2dbq_A            2 KPKVFITREIPEV-GIKMLEDE-FEVEVWGD-EKEIPREILLKKVKE-VDALVTMLSERIDKEVFENAPKL--RIVANYA   75 (334)
T ss_dssp             CCEEEESSCCCHH-HHHHHHTT-SEEEECCC-SSCCCHHHHHHHTTS-CSEEEECTTSCBCHHHHHTCTTC--CEEEESS
T ss_pred             CcEEEEecCCCHH-HHHHHHhc-CCEEEecC-CCCCCHHHHHHHhcC-cEEEEEcCCCCCCHHHHhhCCCc--eEEEECC
Confidence            4589998888764 67888764 46655332 223578888888764 99999988788999999999988  9999999


Q ss_pred             ccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccC----CCCCCcccccccCCCeEEE
Q 015895           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGV  170 (398)
Q Consensus        95 ~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~----~w~~~~~~g~~l~gktvGI  170 (398)
                      +|+|+||+++++++||.|+|+||+++.+||||++++||++.|+++++++.+++|.|.    .|.+..+.|.++.|++|||
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgI  155 (334)
T 2dbq_A           76 VGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGI  155 (334)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEE
T ss_pred             cccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999986    5655445678999999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhh
Q 015895          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (398)
Q Consensus       171 IGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T  250 (398)
                      ||+|.||+.+|+++ ++|||+|++||++.......          ..+     .. ..++++++++||+|++|+|.+++|
T Consensus       156 IG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~----------~~g-----~~-~~~l~~~l~~aDvVil~vp~~~~t  218 (334)
T 2dbq_A          156 IGLGRIGQAIAKRA-KGFNMRILYYSRTRKEEVER----------ELN-----AE-FKPLEDLLRESDFVVLAVPLTRET  218 (334)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH----------HHC-----CE-ECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HhCCCEEEEECCCcchhhHh----------hcC-----cc-cCCHHHHHhhCCEEEECCCCChHH
Confidence            99999999999998 69999999999987652111          112     11 248999999999999999999999


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHH
Q 015895          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE  330 (398)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~  330 (398)
                      +++++++.++.||+|++|||+|||.++|+++|.++|++|+++||++|||++||..++|||++|||++|||+|+.|.++.+
T Consensus       219 ~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~  298 (334)
T 2dbq_A          219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGARE  298 (334)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHH
T ss_pred             HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999556799999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          331 GMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       331 ~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      ++...+++|+.+|++|+++.|.||
T Consensus       299 ~~~~~~~~n~~~~~~g~~~~~~v~  322 (334)
T 2dbq_A          299 GMAELVAKNLIAFKRGEIPPTLVN  322 (334)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             HHHHHHHHHHHHHHcCCCCccccC
Confidence            999999999999999999998885

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.4e-61  Score=475.20  Aligned_cols=312  Identities=31%  Similarity=0.456  Sum_probs=277.0

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEee
Q 015895           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (398)
Q Consensus        15 ~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g   94 (398)
                      ++|||+++++++. +.+.|++. +++++..    ..+.+++.+.+.+ +|+++++..+++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~~-~~~~l~~~-~~~~~~~----~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (333)
T 2d0i_A            2 RPKVGVLLKMKRE-ALEELKKY-ADVEIIL----YPSGEELKGVIGR-FDGIIVSPTTKITREVLENAERL--KVISCHS   72 (333)
T ss_dssp             CSEEEECSCCCHH-HHHHHHTT-SEEEECC----SCCHHHHHHHGGG-CSEEEECTTSCBCHHHHTTCTTC--CEEEESS
T ss_pred             CcEEEEECCCCHH-HHHHHHhc-CCEEEeC----CCCHHHHHHHhcC-CEEEEECCCCCCCHHHHhhCCCc--eEEEECC
Confidence            4689999888764 67888764 4665532    2578888888874 99999888888999999999988  9999999


Q ss_pred             ccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccc----cccCCCeEEE
Q 015895           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQTVGV  170 (398)
Q Consensus        95 ~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g----~~l~gktvGI  170 (398)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|..|. ..+.|    .+|+|++|||
T Consensus        73 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~~~~~l~g~~vgI  151 (333)
T 2d0i_A           73 AGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHA-KIWTGFKRIESLYGKKVGI  151 (333)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHH-HHHTTSCCCCCSTTCEEEE
T ss_pred             cccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCc-ccccCCcccCCCCcCEEEE
Confidence            999999999999999999999999999999999999999999999999999999965431 12345    7999999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhh
Q 015895          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (398)
Q Consensus       171 IGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T  250 (398)
                      ||+|.||+.+|+++ ++|||+|++||++.......          ..+     .. ..++++++++||+|++|+|.+++|
T Consensus       152 IG~G~iG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~~g-----~~-~~~l~e~l~~aDiVil~vp~~~~t  214 (333)
T 2d0i_A          152 LGMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVEK----------ELK-----AR-YMDIDELLEKSDIVILALPLTRDT  214 (333)
T ss_dssp             ECCSHHHHHHHHHH-GGGTCEEEEECSSCCHHHHH----------HHT-----EE-ECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HHCCCEEEEECCCcchhhhh----------hcC-----ce-ecCHHHHHhhCCEEEEcCCCChHH
Confidence            99999999999997 79999999999987642111          011     22 248999999999999999999999


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCC-ceEEcCCCCCCcHHHH
Q 015895          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWTR  329 (398)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~-nvilTPHia~~T~ea~  329 (398)
                      +++++++.++.||+| ++||+|||.++|+++|.++|++|+++||++|||++||++++|||++| ||++|||+++.|.+++
T Consensus       215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~  293 (333)
T 2d0i_A          215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQ  293 (333)
T ss_dssp             TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHH
T ss_pred             HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHH
Confidence            999999999999999 99999999999999999999999999999999999997778999999 9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          330 EGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       330 ~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      .++...+++|+.+|++|+++.|.||
T Consensus       294 ~~~~~~~~~n~~~~~~g~~~~~~v~  318 (333)
T 2d0i_A          294 EDVGFRAVENLLKVLRGEVPEDLVN  318 (333)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCccC
Confidence            9999999999999999999998885

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=6.3e-61  Score=477.37  Aligned_cols=323  Identities=26%  Similarity=0.339  Sum_probs=274.5

Q ss_pred             CeEEEEeCC-CC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc----CCCcEEEec------CCccccHHHHHHh
Q 015895           15 KYRVVSTKP-MP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG----DKCDGVIGQ------LTEDWGETLFAAL   82 (398)
Q Consensus        15 ~~kvlv~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~----~~~d~vi~~------~~~~~~~~~l~~~   82 (398)
                      ++|||++++ ++ .....+.|++. +++....    ..+++++.+.+.    +++|+++++      ..+++++++++++
T Consensus         3 ~~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~   77 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDLWSDFQQK-FEVIPAN----LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL   77 (348)
T ss_dssp             CCEEEECSSCCSSCHHHHHHHHHH-SEEEECC----CCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTS
T ss_pred             CcEEEEECCccccChHHHHHHHhc-ceEEecC----CCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhc
Confidence            468999887 53 22346667653 4664432    247889988886    148988864      2468999999999


Q ss_pred             h-ccCCceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCc---cCCCC-CCc
Q 015895           83 S-RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL---YDGWL-PNL  157 (398)
Q Consensus        83 ~-~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~---~~~w~-~~~  157 (398)
                      | +|  |+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.   |..+. ...
T Consensus        78 ~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~  155 (348)
T 2w2k_A           78 PSSL--KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIG  155 (348)
T ss_dssp             CTTC--CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ccCc--eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccccc
Confidence            8 47  99999999999999999999999999999999999999999999999999999999999998   73111 011


Q ss_pred             ccccccCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       158 ~~g~~l~gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      ..|.+++|+||||||+|+||+.+|+++ + +|||+|++||++.......         ...+     .....++++++++
T Consensus       156 ~~~~~l~g~~vgIIG~G~IG~~vA~~l-~~~~G~~V~~~d~~~~~~~~~---------~~~g-----~~~~~~l~ell~~  220 (348)
T 2w2k_A          156 KSAHNPRGHVLGAVGLGAIQKEIARKA-VHGLGMKLVYYDVAPADAETE---------KALG-----AERVDSLEELARR  220 (348)
T ss_dssp             TTCCCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHH---------HHHT-----CEECSSHHHHHHH
T ss_pred             ccCcCCCCCEEEEEEECHHHHHHHHHH-HHhcCCEEEEECCCCcchhhH---------hhcC-----cEEeCCHHHHhcc
Confidence            356899999999999999999999997 8 9999999999986432110         0011     2223479999999


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceE
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  316 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvi  316 (398)
                      ||+|++|+|++++|+++|+++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||++||..++||+++|||+
T Consensus       221 aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nvi  300 (348)
T 2w2k_A          221 SDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVT  300 (348)
T ss_dssp             CSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEE
T ss_pred             CCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999996567899999999


Q ss_pred             EcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Q 015895          317 VVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLN  361 (398)
Q Consensus       317 lTPHia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~  361 (398)
                      +|||+|+.|.+++.+++..+++|+.+|++|+++.|.|| . |.++
T Consensus       301 ltPH~~~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v~-~-~~~~  343 (348)
T 2w2k_A          301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPA-G-KVFA  343 (348)
T ss_dssp             ECCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCSSBC-S-CCCC
T ss_pred             EcCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCcceec-c-cccC
Confidence            99999999999999999999999999999999999995 4 5554

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.5e-60  Score=474.10  Aligned_cols=317  Identities=27%  Similarity=0.379  Sum_probs=265.4

Q ss_pred             CCCCeEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceE
Q 015895           12 PNGKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (398)
Q Consensus        12 ~~~~~kvlv~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i   90 (398)
                      +..+++|++.+... ..+ .+.++. ..++..+.    ..+.+|+.+.+.+++|+++++..+++++++++++|+|  |+|
T Consensus        18 ~~~kp~i~~l~~~~~~~~-~~~l~~-~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--k~I   89 (347)
T 1mx3_A           18 GSHMPLVALLDGRDCTVE-MPILKD-VATVAFCD----AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RII   89 (347)
T ss_dssp             ---CCEEEESSCSCCTTT-HHHHTT-TCEEEECC----CSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEE
T ss_pred             CCCCCEEEEEcCCcchhh-HHHhhc-cceEEecC----CCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCC--CEE
Confidence            35577888776422 222 456654 34555432    1355666655422488888887788999999999988  999


Q ss_pred             EEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCC----cccc-cccCC
Q 015895           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN----LFVG-NLLKG  165 (398)
Q Consensus        91 ~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~----~~~g-~~l~g  165 (398)
                      ++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|.. ...    ...| .+++|
T Consensus        90 ~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~-~~~~~~~~~~~~~~l~g  168 (347)
T 1mx3_A           90 VRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQ-SVEQIREVASGAARIRG  168 (347)
T ss_dssp             EESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCC-SHHHHHHHTTTCCCCTT
T ss_pred             EEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccc-ccccccccccCccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999631 110    0113 68999


Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      +||||||+|+||+.+|+++ ++|||+|++||++..+..+.          ..+     .....+++|++++||+|++|+|
T Consensus       169 ~tvGIIG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~~g-----~~~~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRA-KAFGFNVLFYDPYLSDGVER----------ALG-----LQRVSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCEEEEECTTSCTTHHH----------HHT-----CEECSSHHHHHHHCSEEEECCC
T ss_pred             CEEEEEeECHHHHHHHHHH-HHCCCEEEEECCCcchhhHh----------hcC-----CeecCCHHHHHhcCCEEEEcCC
Confidence            9999999999999999997 79999999999986542211          011     2233589999999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC--CCCCCCCCceEEcCCCCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~--~~~L~~~~nvilTPHia~  323 (398)
                      ++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.||++|||+.||++  ++|||.+|||++|||+++
T Consensus       233 ~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~  312 (347)
T 1mx3_A          233 LNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  312 (347)
T ss_dssp             CCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             CCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHH
Confidence            999999999999999999999999999999999999999999999999999999999975  478999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 015895          324 ASKWTREGMATLAALNVLGKIKGYPIWGNP  353 (398)
Q Consensus       324 ~T~ea~~~~~~~~~~ni~~~l~g~~~~~~v  353 (398)
                      .|.++++++...+++|+.+|++|+++.+..
T Consensus       313 ~t~~~~~~~~~~~~~ni~~~~~g~~~~~l~  342 (347)
T 1mx3_A          313 YSEQASIEMREEAAREIRRAITGRIPDSLK  342 (347)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSCTTTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcccC
Confidence            999999999999999999999998765333

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.2e-60  Score=465.01  Aligned_cols=292  Identities=22%  Similarity=0.310  Sum_probs=257.2

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (398)
                      ||||++.++++. +.+.|++.++++  .  .          +.+. ++|+++++..   +.++++++|+|  |+|++.|+
T Consensus         1 m~il~~~~~~~~-~~~~l~~~~~~v--~--~----------~~~~-~~d~~i~~~~---~~~~l~~~~~L--k~I~~~~~   59 (303)
T 1qp8_A            1 MELYVNFELPPE-AEEELRKYFKIV--R--G----------GDLG-NVEAALVSRI---TAEELAKMPRL--KFIQVVTA   59 (303)
T ss_dssp             CEEECCSCCCHH-HHHHHHTTCEEE--C--S----------SCCT-TBCCCCBSCC---CHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEccCCCHH-HHHHHHhcCCcc--c--h----------hhhC-CCEEEEECCC---CHHHHhhCCCC--cEEEECCc
Confidence            478998888764 788887765433  1  1          1122 5899888753   46899999988  99999999


Q ss_pred             cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 015895           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (398)
Q Consensus        96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (398)
                      |+|+||++++ ++||.|+|+|++++.+||||++++||++.|+++++++.+++|.|..+    ..+.+++|+||||||+|+
T Consensus        60 G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~----~~~~~l~g~~vgIIG~G~  134 (303)
T 1qp8_A           60 GLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD----VEIPLIQGEKVAVLGLGE  134 (303)
T ss_dssp             CCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----SCCCCCTTCEEEEESCST
T ss_pred             CcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC----CCCCCCCCCEEEEEccCH
Confidence            9999999984 79999999999999999999999999999999999999999996432    123589999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhcc
Q 015895          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (398)
Q Consensus       176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~  255 (398)
                      ||+.+|+++ ++|||+|++|||++..                .    +.....++++++++||+|++|+|++++|+++|+
T Consensus       135 IG~~~A~~l-~~~G~~V~~~dr~~~~----------------~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~  193 (303)
T 1qp8_A          135 IGTRVGKIL-AALGAQVRGFSRTPKE----------------G----PWRFTNSLEEALREARAAVCALPLNKHTRGLVK  193 (303)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCC----------------S----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCccc----------------c----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhC
Confidence            999999997 7999999999997641                0    112235899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccC-CCCCCC-CCCCCCCCceEEcCCCCCC--cHHHHHH
Q 015895          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF-EDEPYM-KPGLSEMKNAIVVPHIASA--SKWTREG  331 (398)
Q Consensus       256 ~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~-~~EP~~-~~~L~~~~nvilTPHia~~--T~ea~~~  331 (398)
                      ++.|+.||+|+++||+|||+++|+++|+++|++|+++||++||| ++||++ ++|||++|||++|||+++.  |.+++++
T Consensus       194 ~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~  273 (303)
T 1qp8_A          194 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQ  273 (303)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHH
T ss_pred             HHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999 889986 5799999999999999998  9999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 015895          332 MATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                      +...+++|+.+|++|+++.|.||
T Consensus       274 ~~~~~~~nl~~~~~g~~~~~~v~  296 (303)
T 1qp8_A          274 MVMEAVRNLITYATGGRPRNIAK  296 (303)
T ss_dssp             HHHHHHHHHHHHHTTSCCSCBCC
T ss_pred             HHHHHHHHHHHHHcCCCCCceeC
Confidence            99999999999999999998884

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=4.7e-60  Score=473.53  Aligned_cols=281  Identities=26%  Similarity=0.353  Sum_probs=245.7

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      ++||||+++.++.  ..+.+++.+ ++.+..  ...++.+++    . ++|++++++.+++++++++ .++|  |+|++.
T Consensus         2 ~mmkIl~~~~~p~--~~~~~~~~~-~v~~~~--~~~~~~~~l----~-~ad~li~~~~~~v~~~ll~-~~~L--k~I~~~   68 (381)
T 3oet_A            2 NAMKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVEEL----N-HADALMVRSVTKVNESLLS-GTPI--NFVGTA   68 (381)
T ss_dssp             CCCEEEEETTSTT--HHHHHTTSS-EEEEEC--C---CHHHH----T-TCSEEEECTTSCBSHHHHT-TSCC--CEEEES
T ss_pred             CceEEEECCCCcH--HHHHHhhCC-cEEEeC--CCCCCHHHH----C-CCEEEEECCCCCCCHHHHc-CCCC--EEEEEc
Confidence            5689999998865  356776655 666543  223455553    3 5999999998899999998 5556  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGl  173 (398)
                      |+|+||||+++|+++||.|+|+||+|+.+||||+++++|++.|+.                     |.+++||||||||+
T Consensus        69 ~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~---------------------g~~l~gktvGIIGl  127 (381)
T 3oet_A           69 TAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD---------------------GFSLRDRTIGIVGV  127 (381)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT---------------------TCCGGGCEEEEECC
T ss_pred             cccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc---------------------CCccCCCEEEEEeE
Confidence            999999999999999999999999999999999999999999852                     35799999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh----
Q 015895          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----  249 (398)
Q Consensus       174 G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~----  249 (398)
                      |+||+.+|+++ ++|||+|++|||+....               .   . .....+++|++++||+|++|+|+|++    
T Consensus       128 G~IG~~vA~~l-~a~G~~V~~~d~~~~~~---------------~---~-~~~~~sl~ell~~aDiV~l~~Plt~~g~~~  187 (381)
T 3oet_A          128 GNVGSRLQTRL-EALGIRTLLCDPPRAAR---------------G---D-EGDFRTLDELVQEADVLTFHTPLYKDGPYK  187 (381)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECHHHHHT---------------T---C-CSCBCCHHHHHHHCSEEEECCCCCCSSTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCChHHh---------------c---c-CcccCCHHHHHhhCCEEEEcCcCCcccccc
Confidence            99999999997 79999999999854321               0   0 11246899999999999999999999    


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHH
Q 015895          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR  329 (398)
Q Consensus       250 T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~  329 (398)
                      |+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||+||||++||+++++||.++ +++|||+||+|.|++
T Consensus       188 T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~  266 (381)
T 3oet_A          188 TLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGK  266 (381)
T ss_dssp             CTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHH
T ss_pred             chhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887899875 899999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCC
Q 015895          330 EGMATLAALNVLGKIKGYPI  349 (398)
Q Consensus       330 ~~~~~~~~~ni~~~l~g~~~  349 (398)
                      .++..++++|+.+|+++.+-
T Consensus       267 ~~~~~~~~~~l~~~l~~~~~  286 (381)
T 3oet_A          267 ARGTTQVFEAYSAFIGREQR  286 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCcc
Confidence            99999999999999987553

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8.6e-57  Score=450.73  Aligned_cols=281  Identities=25%  Similarity=0.346  Sum_probs=245.8

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (398)
                      |||++++.++.  ..+.+++.+ ++.+....  ..+.+++    . ++|++++++.+++++++++ +|+|  |+|++.|+
T Consensus         1 mkil~~~~~~~--~~~~~~~~~-~v~~~~~~--~~~~~~l----~-~ad~li~~~~~~~~~~~l~-~~~L--k~I~~~~~   67 (380)
T 2o4c_A            1 MRILADENIPV--VDAFFADQG-SIRRLPGR--AIDRAAL----A-EVDVLLVRSVTEVSRAALA-GSPV--RFVGTCTI   67 (380)
T ss_dssp             CEEEEETTCTT--HHHHHGGGS-EEEEECGG--GCSTTTT----T-TCSEEEECTTSCBCHHHHT-TSCC--CEEEECSS
T ss_pred             CEEEEecCchH--HHHHHHhCC-cEEEecCC--cCChHHH----C-CcEEEEEcCCCCCCHHHhc-CCCc--eEEEEcCc
Confidence            58999888765  356676654 55544321  2334443    3 5999999988899999999 8887  99999999


Q ss_pred             cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 015895           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (398)
Q Consensus        96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (398)
                      |+||||+++++++||.|+|+||+|+.+||||+++++|++.|+.                     |.+++|+||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---------------------~~~l~g~tvGIIGlG~  126 (380)
T 2o4c_A           68 GTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---------------------GADLAERTYGVVGAGQ  126 (380)
T ss_dssp             CSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---------------------TCCGGGCEEEEECCSH
T ss_pred             ccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---------------------hcccCCCEEEEEeCCH
Confidence            9999999999999999999999999999999999999999962                     2479999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh----hh
Q 015895          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (398)
Q Consensus       176 IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~----T~  251 (398)
                      ||+.+|+++ ++|||+|++|||+....  .           .+     . ...++++++++||+|++|+|++++    |+
T Consensus       127 IG~~vA~~l-~~~G~~V~~~d~~~~~~--~-----------~g-----~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~  186 (380)
T 2o4c_A          127 VGGRLVEVL-RGLGWKVLVCDPPRQAR--E-----------PD-----G-EFVSLERLLAEADVISLHTPLNRDGEHPTR  186 (380)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECHHHHHH--S-----------TT-----S-CCCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred             HHHHHHHHH-HHCCCEEEEEcCChhhh--c-----------cC-----c-ccCCHHHHHHhCCEEEEeccCccccccchh
Confidence            999999997 79999999999865321  0           01     1 235899999999999999999999    99


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHH
Q 015895          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (398)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~  331 (398)
                      ++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||+++++|+. +||++|||+|++|.+++.+
T Consensus       187 ~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~  265 (380)
T 2o4c_A          187 HLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLR  265 (380)
T ss_dssp             TSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988778887 5999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 015895          332 MATLAALNVLGKIKGYPIWG  351 (398)
Q Consensus       332 ~~~~~~~ni~~~l~g~~~~~  351 (398)
                      +...+++|+.++++|++..+
T Consensus       266 ~~~~~~~nl~~~l~g~~~~~  285 (380)
T 2o4c_A          266 GTAQIYQAYCAWRGIAERVS  285 (380)
T ss_dssp             HHHHHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCccc
Confidence            99999999999999987544

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.4e-57  Score=440.39  Aligned_cols=250  Identities=26%  Similarity=0.356  Sum_probs=223.5

Q ss_pred             CCcEEEecCCccccHHHHHHhhccCCceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHH
Q 015895           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (398)
Q Consensus        62 ~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~  141 (398)
                      ++|+++++ .+++      ++|+|  |+|++.|+|+|+||+++|++++|.++| ++.++.+||||++++||++.|+++.+
T Consensus        34 ~ad~li~~-~~~~------~~~~L--k~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~  103 (290)
T 3gvx_A           34 DAEAQVIK-DRYV------LGKRT--KMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILEN  103 (290)
T ss_dssp             CCSEEEES-SCCC------CCSSC--CEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hhhhhhhh-hhhh------hhhhh--HHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhh
Confidence            59999984 3333      68887  999999999999999999987666555 58899999999999999999999999


Q ss_pred             HHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC
Q 015895          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (398)
Q Consensus       142 ~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (398)
                      ++.+++|+|.   +..  ..+++||||||||+|+||+.+|+++ ++|||+|++|||+.....              .   
T Consensus       104 ~~~~~~g~w~---~~~--~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~---  160 (290)
T 3gvx_A          104 NELMKAGIFR---QSP--TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVDQN--------------V---  160 (290)
T ss_dssp             HHHHHTTCCC---CCC--CCCCTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSCCCTT--------------C---
T ss_pred             hhHhhhcccc---cCC--ceeeecchheeeccCchhHHHHHHH-HhhCcEEEEEeccccccc--------------c---
Confidence            9999999964   221  2689999999999999999999997 799999999999864310              0   


Q ss_pred             ccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCC
Q 015895          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (398)
Q Consensus       222 ~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~  301 (398)
                        .....+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++
T Consensus       161 --~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (290)
T 3gvx_A          161 --DVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWN  238 (290)
T ss_dssp             --SEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             --ccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccC
Confidence              123458999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCceEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCC
Q 015895          302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVLGKIKGYP  348 (398)
Q Consensus       302 EP~~~~~L~~~~nvilTPHia-~~T~ea~~~~~~~~~~ni~~~l~g~~  348 (398)
                      ||+  +|||++|||++|||+| ++|.++++++...+++|+.+|++|+.
T Consensus       239 EP~--~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          239 EPE--ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             TTS--CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             Ccc--cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence            998  8899999999999999 89999999999999999999999864

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=6.6e-37  Score=314.07  Aligned_cols=252  Identities=12%  Similarity=0.095  Sum_probs=209.9

Q ss_pred             CceEE-EeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCC
Q 015895           87 GKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (398)
Q Consensus        87 ~k~i~-~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~g  165 (398)
                      ++.|+ .+++|+|++  ++++++||.++|+|++|+ +|||       +++|++....+.+++| |   .+  +.+.++.|
T Consensus       194 l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w---~r--~~~~~l~G  257 (479)
T 1v8b_A          194 IIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-L---MR--ATDFLISG  257 (479)
T ss_dssp             CCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-H---HH--HHCCCCTT
T ss_pred             eEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-h---hh--ccccccCC
Confidence            37887 779999998  789999999999999999 9999       5578888888888888 4   32  45678999


Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      |||||||+|.||+.+|+++ ++|||+|++||+++....+..         .     .++ ...++++++++||+|++|+ 
T Consensus       258 ktVgIIG~G~IG~~vA~~l-~~~G~~Viv~d~~~~~~~~a~---------~-----~g~-~~~~l~ell~~aDiVi~~~-  320 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAV---------M-----EGF-NVVTLDEIVDKGDFFITCT-  320 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHH---------T-----TTC-EECCHHHHTTTCSEEEECC-
T ss_pred             CEEEEEeeCHHHHHHHHHH-HhCcCEEEEEeCChhhHHHHH---------H-----cCC-EecCHHHHHhcCCEEEECC-
Confidence            9999999999999999997 799999999999986532210         1     112 2358999999999999995 


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHH--HHhcCCccEEEeccCCCCCCCCCCCCCC--CceEEcCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE--HLKQNPMFRVGLDVFEDEPYMKPGLSEM--KNAIVVPH  320 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~--aL~~g~i~gAalDV~~~EP~~~~~L~~~--~nvilTPH  320 (398)
                         +|+++|+++.|+.||+|++|||++||++ ||+++|.+  +|++|+|+ +++|||..+  +++|||.+  |||++| |
T Consensus       321 ---~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp--~~~~l~~l~~~nvv~t-H  393 (479)
T 1v8b_A          321 ---GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLP--NGNKIIVLARGRLLNL-G  393 (479)
T ss_dssp             ---SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECT--TSCEEEEEGGGSBHHH-H
T ss_pred             ---ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECC--CCCeeeEecCCCEEEE-e
Confidence               7899999999999999999999999999 99999999  99999998 999999442  24788888  999999 9


Q ss_pred             CC-CCcHH-HHHHHHHHHHHHHHHHHcCC--CCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcceee
Q 015895          321 IA-SASKW-TREGMATLAALNVLGKIKGY--PIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLT  393 (398)
Q Consensus       321 ia-~~T~e-a~~~~~~~~~~ni~~~l~g~--~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (398)
                      +| +++.+ .+.+++.++++|+..|++|+  ++.|.|+++ |.              .+-+++..+.....|..+..
T Consensus       394 ~atghp~e~~~~s~a~~~~~ni~~~~~g~~~~l~n~V~~l-p~--------------~~de~va~l~L~~lG~~l~~  455 (479)
T 1v8b_A          394 CATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLL-PK--------------HLDEKVALYHLKKLNASLTE  455 (479)
T ss_dssp             SSCCSCHHHHHHHHHHHHHHHHHHHHTTTSSSCCSSEECC-CH--------------HHHHHHHHHHHGGGTCCCCC
T ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHcCCCCcCCcceEeC-Ch--------------hhHHHHHHHHHHHcCChHhh
Confidence            99 67766 78899999999999999999  999989766 42              24455555555555554443

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=1.4e-37  Score=320.19  Aligned_cols=252  Identities=13%  Similarity=0.176  Sum_probs=204.7

Q ss_pred             hccCCceEE-EeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCccccc
Q 015895           83 SRAGGKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (398)
Q Consensus        83 ~~l~~k~i~-~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~  161 (398)
                      +++  +.|+ ..++|+|++  ++++++||.|+|+|++|+ +|||+       ++|++....+.+++|    |.+  +.|.
T Consensus       212 ~~l--~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g----w~~--~~g~  273 (494)
T 3d64_A          212 AHI--KGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG----IKR--ATDV  273 (494)
T ss_dssp             TTC--CCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH----HHH--HHCC
T ss_pred             hCc--EEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh----hhh--cccc
Confidence            444  7777 889999998  789999999999999999 99994       457777766666666    432  4577


Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++.||||||||+|.||+.+|+++ ++|||+|++||+++....+..         .     .++. ..++++++++||+|+
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l-~~~G~~V~v~d~~~~~~~~a~---------~-----~G~~-~~~l~ell~~aDiVi  337 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSL-RGLGATVWVTEIDPICALQAA---------M-----EGYR-VVTMEYAADKADIFV  337 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSCHHHHHHHH---------T-----TTCE-ECCHHHHTTTCSEEE
T ss_pred             ccCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCChHhHHHHH---------H-----cCCE-eCCHHHHHhcCCEEE
Confidence            89999999999999999999997 799999999999986532210         0     1122 358999999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCC--CceEE
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEM--KNAIV  317 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~--~nvil  317 (398)
                      +|+    +|+++|+++.|+.||+|++|||+|||++ ||+++| ++|++|+|+ +++|+|   |++ ++|||.+  |||++
T Consensus       338 ~~~----~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~---plp~~~pL~~l~~~nvv~  408 (494)
T 3d64_A          338 TAT----GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI---IFPDGKRVILLAEGRLVN  408 (494)
T ss_dssp             ECS----SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHH
T ss_pred             ECC----CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE---ECCCCCchhhcCCCCEEE
Confidence            998    6899999999999999999999999999 699999 999999987 555554   654 4789988  99999


Q ss_pred             cCCCC-CCcHH-HHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCCCCCCCCCCCCCChHHHHHHHhhhHhhhcCcceee
Q 015895          318 VPHIA-SASKW-TREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGKIKISNVGTVCLT  393 (398)
Q Consensus       318 TPHia-~~T~e-a~~~~~~~~~~ni~~~l~g~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (398)
                      | |+| ++|.+ ++.+++.++++|+..|++|+++.|.|+++ |.              .+-+++..+.....|..+..
T Consensus       409 t-H~atg~~~~~~~~~~a~~~~~ni~~~~~g~~~~n~V~~l-p~--------------~~d~~va~l~L~~~g~~~~~  470 (494)
T 3d64_A          409 L-GCATGHPSFVMSNSFTNQTLAQIELFTRGGEYANKVYVL-PK--------------HLDEKVARLHLARIGAQLSE  470 (494)
T ss_dssp             H-HTSCCSCHHHHHHHHHHHHHHHHHHHHHGGGSCSSEEEC-CH--------------HHHHHHHHHHHTTTTCCCCC
T ss_pred             E-eCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeC-Ch--------------hHHHHHHHHHHHHcCChHHh
Confidence            9 999 66754 78899999999999999999999999765 41              45556666655555554443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=6.8e-29  Score=240.82  Aligned_cols=215  Identities=15%  Similarity=0.085  Sum_probs=165.2

Q ss_pred             CCeEEEEeCCC-CchHHHHHHHhCCCeEEEecCCCCC------CCHHHHHHHhcCCCcEEEec----------------C
Q 015895           14 GKYRVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTI------LSVEDIIALIGDKCDGVIGQ----------------L   70 (398)
Q Consensus        14 ~~~kvlv~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~------~~~eel~~~~~~~~d~vi~~----------------~   70 (398)
                      +.|||++...- .+..+.+.|.+.++++.+...++..      ...+++.+.+. ++|+++++                .
T Consensus         4 ~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            4 TGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWN-TVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             TTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGG-GCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             cCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHh-cCCEEEeccccccCCceeecccccC
Confidence            34677666422 2234678888888888765322211      12244554454 49999986                3


Q ss_pred             CccccHHHHHHhhccCCceEEEeeccccccCc-hHhhhcCceEEecC------CCCCchHHHHHHHHHHHHhhchHHHHH
Q 015895           71 TEDWGETLFAALSRAGGKAFSNMAVGYNNVDV-NAANKYGIAVGNTP------GVLTETTAELAASLSLAAARRIVEADE  143 (398)
Q Consensus        71 ~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~-~~~~~~gI~V~n~p------~~~~~~vAE~~l~l~L~~~R~~~~~~~  143 (398)
                      .+++++++++++|++  |+|+   +|+|++|+ ++++++||.|+|+|      ++++.+|||++++++|..         
T Consensus        83 ~~~~~~~~l~~~~~l--~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~---------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNH--CVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH---------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             CccchHHHHHhCCCC--CEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh---------
Confidence            457899999999988  9987   79999998 89999999999998      889999999999988862         


Q ss_pred             HHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc
Q 015895          144 FMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT  223 (398)
Q Consensus       144 ~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (398)
                                     .+.++.|+++||||+|.||+.+|+++ ++|||+|++|||++.+.. .        ....+.   .
T Consensus       149 ---------------~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~dr~~~~~~-~--------~~~~g~---~  200 (293)
T 3d4o_A          149 ---------------TDFTIHGANVAVLGLGRVGMSVARKF-AALGAKVKVGARESDLLA-R--------IAEMGM---E  200 (293)
T ss_dssp             ---------------CSSCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHH-H--------HHHTTS---E
T ss_pred             ---------------cCCCCCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECCHHHHH-H--------HHHCCC---e
Confidence                           13579999999999999999999997 799999999999875421 1        011121   1


Q ss_pred             ccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       224 ~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      .....++++++++||+|++|+|.     ++++++.|+.||+|+++||++||+.
T Consensus       201 ~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          201 PFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             ecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            11124788999999999999995     7889999999999999999999753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.93  E-value=5e-26  Score=221.28  Aligned_cols=221  Identities=14%  Similarity=0.089  Sum_probs=159.4

Q ss_pred             CCeEEEEeCCC-CchHHHHHHHhCCCeEEEecCCCCCC------CHHHHHHHhcCCCcEEEec---C-----------Cc
Q 015895           14 GKYRVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTIL------SVEDIIALIGDKCDGVIGQ---L-----------TE   72 (398)
Q Consensus        14 ~~~kvlv~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~------~~eel~~~~~~~~d~vi~~---~-----------~~   72 (398)
                      +.|||++...- ....+.+.|.+.++++.+...++...      ..+++.+.+. ++|+++++   .           .+
T Consensus         6 ~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            6 TGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQ-QIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGG-GCSEEECCSSCEETTTEECBSSCSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHh-cCCEEEeccccccCCcccccccccC
Confidence            45788776542 22346788888888887653222111      1123344444 49999972   1           34


Q ss_pred             c--ccHHHHHHhhccCCceEEEeeccccccC-chHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCc
Q 015895           73 D--WGETLFAALSRAGGKAFSNMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL  149 (398)
Q Consensus        73 ~--~~~~~l~~~~~l~~k~i~~~g~G~d~iD-~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~  149 (398)
                      +  +++++++++|++  |+|.   +|+||+| +++|+++||.|+|+|+.+  ++         ++.|+++.+     +|.
T Consensus        85 ~~~~~~~~l~~~~~l--~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~  143 (300)
T 2rir_A           85 EVVLKQDHLDRTPAH--CVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGT  143 (300)
T ss_dssp             CEECCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHH
T ss_pred             CccchHHHHhhcCCC--CEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHH
Confidence            5  889999999987  8887   8999999 999999999999999974  33         345666554     333


Q ss_pred             cCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895          150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       150 ~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      |..  .....+.+++|+|+||||+|.||+.+|+++ ++|||+|++|||++.... ..        ...+.   ......+
T Consensus       144 ~~~--~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~d~~~~~~~-~~--------~~~g~---~~~~~~~  208 (300)
T 2rir_A          144 IML--AIQHTDYTIHGSQVAVLGLGRTGMTIARTF-AALGANVKVGARSSAHLA-RI--------TEMGL---VPFHTDE  208 (300)
T ss_dssp             HHH--HHHTCSSCSTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHH-HH--------HHTTC---EEEEGGG
T ss_pred             HHH--HHHhcCCCCCCCEEEEEcccHHHHHHHHHH-HHCCCEEEEEECCHHHHH-HH--------HHCCC---eEEchhh
Confidence            310  001246789999999999999999999997 799999999999875421 10        11121   1111257


Q ss_pred             HHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       230 l~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      +++++++||+|++|+|.     ++++++.++.||+|+++||++||+.
T Consensus       209 l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          209 LKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             HHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             HHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            89999999999999996     6889999999999999999999753

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.91  E-value=1.2e-25  Score=231.84  Aligned_cols=224  Identities=15%  Similarity=0.091  Sum_probs=178.3

Q ss_pred             eEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeE
Q 015895           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (398)
Q Consensus        89 ~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktv  168 (398)
                      ++-..|+|+|++  .++.++||.++|+++.|. +|||+       .+|+++...+.+..+    |.+  ..+..+.|++|
T Consensus       214 vveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g----~~r--~~~~~l~GktV  277 (494)
T 3ce6_A          214 VTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG----INR--GTDALIGGKKV  277 (494)
T ss_dssp             EEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH----HHH--HHCCCCTTCEE
T ss_pred             EEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH----HHh--ccCCCCCcCEE
Confidence            445789999998  678999999999999999 99994       356665555555444    432  23457999999


Q ss_pred             EEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCh
Q 015895          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (398)
Q Consensus       169 GIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~  248 (398)
                      +|+|+|.||+.+|+++ +++|++|+++|+++......         ...|     +. ..+++++++.+|+|+.|++   
T Consensus       278 ~IiG~G~IG~~~A~~l-ka~Ga~Viv~d~~~~~~~~A---------~~~G-----a~-~~~l~e~l~~aDvVi~atg---  338 (494)
T 3ce6_A          278 LICGYGDVGKGCAEAM-KGQGARVSVTEIDPINALQA---------MMEG-----FD-VVTVEEAIGDADIVVTATG---  338 (494)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTT-----CE-ECCHHHHGGGCSEEEECSS---
T ss_pred             EEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH---------HHcC-----CE-EecHHHHHhCCCEEEECCC---
Confidence            9999999999999997 79999999999987653211         1112     22 2478899999999999985   


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHH-HHhcCCccEEEeccCCCCCCCCC--CCCCCCceE----EcCC
Q 015895          249 TTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE-HLKQNPMFRVGLDVFEDEPYMKP--GLSEMKNAI----VVPH  320 (398)
Q Consensus       249 ~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~-aL~~g~i~gAalDV~~~EP~~~~--~L~~~~nvi----lTPH  320 (398)
                       +.++|+.+.|+.||+|++++|++|++. +|+++|.+ +|+++++. +++|+|+.++. .+  .|+..+|++    +|||
T Consensus       339 -t~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~-~~~l~LL~~grlvnL~~~TPH  415 (494)
T 3ce6_A          339 -NKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT-GRSIIVLSEGRLLNLGNATGH  415 (494)
T ss_dssp             -SSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT-CCEEEEEGGGSCHHHHHSCCS
T ss_pred             -CHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc-chHHHHHhCCCEEeccCCCCC
Confidence             467889899999999999999999999 99999988 88888887 56799876432 23  366778888    9999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 015895          321 IASASKWTREGMATLAALNVLGKIKGYPIWGNP  353 (398)
Q Consensus       321 ia~~T~ea~~~~~~~~~~ni~~~l~g~~~~~~v  353 (398)
                      +++.+.++   +..++.+++..+++|+++.+.|
T Consensus       416 ~a~~~~~s---~~~qa~~ai~~~~~g~~~~~~V  445 (494)
T 3ce6_A          416 PSFVMSNS---FANQTIAQIELWTKNDEYDNEV  445 (494)
T ss_dssp             CHHHHHHH---HHHHHHHHHHHHHTGGGCCSSE
T ss_pred             ccccchHH---HHHHHHHHHHHHHcCCCCCCEE
Confidence            99877764   4778899999999998887776

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.90  E-value=1e-22  Score=204.26  Aligned_cols=286  Identities=15%  Similarity=0.126  Sum_probs=192.7

Q ss_pred             CCchHHHHHHHhCCCeEEEecCC--CCCCCHHHHH-----------HHhcCCCcEEEecCCccccHHHHHHhhccCCceE
Q 015895           24 MPGTRWINLLIEQDCRVEICTQK--KTILSVEDII-----------ALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (398)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~eel~-----------~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i   90 (398)
                      +.|+ ..+.|.+.|+++.+-...  ....+.+++.           +.+. ++|+| +....+.++++....+..  .++
T Consensus        18 ltP~-~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~-~adii-~~vk~p~~~e~~~l~~~~--~l~   92 (377)
T 2vhw_A           18 ITPA-GVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWA-DADLL-LKVKEPIAAEYGRLRHGQ--ILF   92 (377)
T ss_dssp             CCHH-HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHH-HCSEE-ECSSCCCGGGGGGCCTTC--EEE
T ss_pred             cCHH-HHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhc-cCCEE-EEeCCCChHHHhhcCCCC--EEE
Confidence            4443 678888888888654322  2245666665           2222 37865 444556666665545543  777


Q ss_pred             EEeeccccccCchHhhhcCceEE----------ecCCCCCchHHHHHHHHHHHHh-hchHHHHHHHHcCccCCCCCCccc
Q 015895           91 SNMAVGYNNVDVNAANKYGIAVG----------NTPGVLTETTAELAASLSLAAA-RRIVEADEFMRAGLYDGWLPNLFV  159 (398)
Q Consensus        91 ~~~g~G~d~iD~~~~~~~gI~V~----------n~p~~~~~~vAE~~l~l~L~~~-R~~~~~~~~~~~g~~~~w~~~~~~  159 (398)
                      .....++|...++++.++||.++          |.|.++  ++||++..+++.+. |++.    ..+.|+|. |...  .
T Consensus        93 ~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~~~a~r~l~----~~~~g~~~-~~~~--~  163 (377)
T 2vhw_A           93 TFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAAQVGAYHLM----RTQGGRGV-LMGG--V  163 (377)
T ss_dssp             ECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHHHHHHHHTS----GGGTSCCC-CTTC--B
T ss_pred             EEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHHHHHHHHHH----HhcCCCcc-cccC--C
Confidence            77778889889999999999998          555544  66799985555554 7663    33445543 2221  1


Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhcCC
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREAD  238 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sl~ell~~aD  238 (398)
                       .++.|++|+|+|+|.||+.+|+++ +++|++|+++|+++... +...+.       .+... .......+++++++++|
T Consensus       164 -~~l~g~~V~ViG~G~iG~~~a~~a-~~~Ga~V~~~d~~~~~l-~~~~~~-------~g~~~~~~~~~~~~l~~~l~~aD  233 (377)
T 2vhw_A          164 -PGVEPADVVVIGAGTAGYNAARIA-NGMGATVTVLDINIDKL-RQLDAE-------FCGRIHTRYSSAYELEGAVKRAD  233 (377)
T ss_dssp             -TTBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHH-------TTTSSEEEECCHHHHHHHHHHCS
T ss_pred             -CCCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHh-------cCCeeEeccCCHHHHHHHHcCCC
Confidence             369999999999999999999997 79999999999987542 111111       11110 00001235788899999


Q ss_pred             EEEEcc--CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCC-CCCC-CCCCCCCCc
Q 015895          239 VISLHP--VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED-EPYM-KPGLSEMKN  314 (398)
Q Consensus       239 iV~l~~--Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~-EP~~-~~~L~~~~n  314 (398)
                      +|+.++  |.+ +|.++++++.++.||+|+++||++..             .|.       ||+. ||.+ ++|++.++|
T Consensus       234 vVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~-------------~Gg-------v~e~~ep~~~~~~~~~~~~  292 (377)
T 2vhw_A          234 LVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAID-------------QGG-------CFEGSRPTTYDHPTFAVHD  292 (377)
T ss_dssp             EEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGG-------------TTC-------SBTTCCCBCSSSCEEEETT
T ss_pred             EEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecC-------------CCC-------ccccccCCCCCCCEEEECC
Confidence            999966  655 78899999999999999999999831             121       7887 8863 568999999


Q ss_pred             eE--EcCCCCCCcHHH-H--------HHHHHHHHHHHH-HHHcCCCCCCCCC
Q 015895          315 AI--VVPHIASASKWT-R--------EGMATLAALNVL-GKIKGYPIWGNPN  354 (398)
Q Consensus       315 vi--lTPHia~~T~ea-~--------~~~~~~~~~ni~-~~l~g~~~~~~vn  354 (398)
                      |+  +|||+++.+... .        ..+..++.++.. .+.+++++.+.+|
T Consensus       293 v~i~~~phl~~~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~v~  344 (377)
T 2vhw_A          293 TLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLS  344 (377)
T ss_dssp             EEEECBTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTEE
T ss_pred             EEEEecCCcchhhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcChHHhCcEE
Confidence            98  999999988652 2        223333444433 4456667787774

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.81  E-value=3e-21  Score=195.65  Aligned_cols=154  Identities=20%  Similarity=0.261  Sum_probs=124.0

Q ss_pred             ccc-cCCCeEEEEecChhHHHHHHHHHhc-CCcEEEEEc-CChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          160 GNL-LKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       160 g~~-l~gktvGIIGlG~IG~~vA~~la~~-fG~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      |.+ |+|||+||+|+|+||+.+|+++ ++ |||+|++|+ ++...        +    .         ....+++++++.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l-~~~~G~kVv~~sD~~g~~--------~----~---------~~gvdl~~L~~~  263 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIM-SEDFGMKVVAVSDSKGGI--------Y----N---------PDGLNADEVLKW  263 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEE--------E----E---------EEEECHHHHHHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHH-HHhcCCEEEEEeCCCccc--------c----C---------ccCCCHHHHHHH
Confidence            356 9999999999999999999997 78 999999994 43210        0    0         011257777765


Q ss_pred             CCE-EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC--CCCCCCC
Q 015895          237 ADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMK  313 (398)
Q Consensus       237 aDi-V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~--~~L~~~~  313 (398)
                      +|. .++ +|+ ++|++ |+.+.|..||. .+||||+||.+||+++ +++|+++.|.+++     +||++.  ++|+.++
T Consensus       264 ~d~~~~l-~~l-~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~  333 (419)
T 1gtm_A          264 KNEHGSV-KDF-PGATN-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEK  333 (419)
T ss_dssp             HHHHSSS-TTC-TTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHT
T ss_pred             HHhcCEe-ecC-ccCee-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcC
Confidence            554 222 566 67888 89999999998 5999999999999999 6999999999988     899753  5899999


Q ss_pred             ceEEcCCC----C-----------------CCcHHHHHHHHHHHHHHHHHHHc
Q 015895          314 NAIVVPHI----A-----------------SASKWTREGMATLAALNVLGKIK  345 (398)
Q Consensus       314 nvilTPHi----a-----------------~~T~ea~~~~~~~~~~ni~~~l~  345 (398)
                      ||++|||+    |                 +++.+.++++...+.+++.++++
T Consensus       334 ~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~  386 (419)
T 1gtm_A          334 GILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYN  386 (419)
T ss_dssp             TCEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999    6                 56778888888888888888873

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.80  E-value=3.5e-19  Score=177.91  Aligned_cols=288  Identities=15%  Similarity=0.159  Sum_probs=181.6

Q ss_pred             CCchHHHHHHHhCCCeEEEecCC--CCCCCHHHHHH----------HhcCCCcEEEecCCccccHHHHHHhhccCCceEE
Q 015895           24 MPGTRWINLLIEQDCRVEICTQK--KTILSVEDIIA----------LIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (398)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~eel~~----------~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~   91 (398)
                      +.|+ ..+.|.+.|+++.+-...  ....+.+++.+          ..  ++|.|+. ..++..++ ++.++. +.++++
T Consensus        18 l~P~-~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~--~ad~il~-vk~p~~~~-~~~l~~-~~~~~~   91 (369)
T 2eez_A           18 LTPG-GVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW--GAEMVVK-VKEPLPEE-YGFLRE-GLILFT   91 (369)
T ss_dssp             SCHH-HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT--TSSEEEC-SSCCCGGG-GGGCCT-TCEEEE
T ss_pred             cCHH-HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee--cCCEEEE-ECCCCHHH-HhhcCC-CcEEEE
Confidence            4454 688888889888664322  13467777765          33  4898764 34455444 566533 348999


Q ss_pred             EeeccccccCchHhhhcCceEE---ecCCC-CC----chHHHHHH--HHHHHHhhchHHHHHHHHcCccCCCCCCccccc
Q 015895           92 NMAVGYNNVDVNAANKYGIAVG---NTPGV-LT----ETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (398)
Q Consensus        92 ~~g~G~d~iD~~~~~~~gI~V~---n~p~~-~~----~~vAE~~l--~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~  161 (398)
                      ....+.|..+++++.++||.+.   +.+.. ..    .++++.+-  +.+++ ++.+...    ..|+. .|...   ..
T Consensus        92 ~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a-~~~l~~~----~~g~~-~~~~~---~~  162 (369)
T 2eez_A           92 YLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVG-AQFLEKP----KGGRG-VLLGG---VP  162 (369)
T ss_dssp             CCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHH-HHHTSGG----GTSCC-CCTTC---BT
T ss_pred             EecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHH-HHHHHHh----cCCCc-eecCC---CC
Confidence            9999999999999999999998   55543 12    44555444  33322 2222211    11210 12211   14


Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sl~ell~~aDiV  240 (398)
                      ++.+++|+|+|.|.||+.+|+.+ +++|++|+++|+++... +...+.       .+..- .......+++++++.+|+|
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l-~~~Ga~V~~~d~~~~~~-~~~~~~-------~g~~~~~~~~~~~~l~~~~~~~DvV  233 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIA-LGMGAQVTILDVNHKRL-QYLDDV-------FGGRVITLTATEANIKKSVQHADLL  233 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHH-------TTTSEEEEECCHHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHh-------cCceEEEecCCHHHHHHHHhCCCEE
Confidence            69999999999999999999997 79999999999987542 111111       11110 0001123577888999999


Q ss_pred             EEccCCCh-hhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CCCCCCCCceE--
Q 015895          241 SLHPVLDK-TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAI--  316 (398)
Q Consensus       241 ~l~~Plt~-~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~~L~~~~nvi--  316 (398)
                      +.|++.+. .+..++.++.++.||+|+++||++-.             .|   |+ +|++  ||.+ ++|++..+++.  
T Consensus       234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~  294 (369)
T 2eez_A          234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHY  294 (369)
T ss_dssp             EECCC-------CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEE
T ss_pred             EECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEE
Confidence            99999765 67888899999999999999999831             12   44 9998  6643 46788889999  


Q ss_pred             -------EcCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 015895          317 -------VVPHIASA--SKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (398)
Q Consensus       317 -------lTPHia~~--T~ea~~~~~~~~~~ni~~~l~g~~~~~~vn  354 (398)
                             .|||+++.  +.+....+...+.+++..++.++++.+.+|
T Consensus       295 ~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~  341 (369)
T 2eez_A          295 GVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAALLKGLN  341 (369)
T ss_dssp             CCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEE
T ss_pred             eeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChHHhcCEE
Confidence                   88998874  456677888888888877778887888874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.75  E-value=4.5e-18  Score=171.82  Aligned_cols=229  Identities=15%  Similarity=0.163  Sum_probs=153.3

Q ss_pred             HHHHHHHhCCCeEEEecCC--CCCCCHHHHHHH---------hcCCCcEEEecCCccccHHHHHHh-hccCCceEEEeec
Q 015895           28 RWINLLIEQDCRVEICTQK--KTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAV   95 (398)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~--~~~~~~eel~~~---------~~~~~d~vi~~~~~~~~~~~l~~~-~~l~~k~i~~~g~   95 (398)
                      +..+.|.+.|+++.+....  ...++.++..+.         +.. +|+++.. .++ +++.++.+ +.+  ++|+..+.
T Consensus        28 ~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~-adiil~v-k~p-~~~~i~~l~~~~--~li~~~~~  102 (401)
T 1x13_A           28 KTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQ-SEIILKV-NAP-LDDEIALLNPGT--TLVSFIWP  102 (401)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGS-SSEEECS-SCC-CHHHHTTCCTTC--EEEECCCG
T ss_pred             HHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhc-CCeEEEe-CCC-CHHHHHHhcCCC--cEEEEecC
Confidence            3678888889888764322  224677777654         333 8887754 333 46777777 444  99999999


Q ss_pred             cccccCchHhhhcCceEEecCCCCCchHHHHHHHHH---HHHhhchHHHHHHHHcCcc--CCCCCCc--ccccccCCCeE
Q 015895           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS---LAAARRIVEADEFMRAGLY--DGWLPNL--FVGNLLKGQTV  168 (398)
Q Consensus        96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~---L~~~R~~~~~~~~~~~g~~--~~w~~~~--~~g~~l~gktv  168 (398)
                      |+|++|++++.++||.|.+     .++|+|++.++.   ++..+.+.. ...++.+.|  ..|....  ..| ++.|++|
T Consensus       103 ~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag-~~av~~~~~~~~~~~~~~~~~~g-~l~g~~V  175 (401)
T 1x13_A          103 AQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAG-YRAIVEAAHEFGRFFTGQITAAG-KVPPAKV  175 (401)
T ss_dssp             GGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHH-HHHHHHHHHHCSSCSSCEEETTE-EECCCEE
T ss_pred             CCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHH-HHHHHHHHHhcccccCCceeecc-CcCCCEE
Confidence            9999999999999999975     445555555443   232333222 233433332  1222110  012 5889999


Q ss_pred             EEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc------------cccc----------
Q 015895          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV------------TWKR----------  226 (398)
Q Consensus       169 GIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~----------  226 (398)
                      +|+|+|.||..+++.+ +++|++|+++|+++... +. .+.       .+....            ++..          
T Consensus       176 ~ViGaG~iG~~aa~~a-~~~Ga~V~v~D~~~~~~-~~-~~~-------lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  245 (401)
T 1x13_A          176 MVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-EQ-VQS-------MGAEFLELDFKEEAGSGDGYAKVMSDAFIKAE  245 (401)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCGGGH-HH-HHH-------TTCEECCC--------CCHHHHHHSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HH-HHH-------cCCEEEEecccccccccccchhhccHHHHHHH
Confidence            9999999999999996 79999999999987542 11 111       111100            0000          


Q ss_pred             cCCHHHHhhcCCEEEEc--cCCChhhhhhccHHHHhcCCCCcEEEEcC--CCchhcH
Q 015895          227 ASSMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (398)
Q Consensus       227 ~~sl~ell~~aDiV~l~--~Plt~~T~~li~~~~~~~mk~gailIN~a--RG~~vde  279 (398)
                      ..+++++++.+|+|+.|  +|. ..+..+++++.++.||+|+++||+|  ||+.+++
T Consensus       246 ~~~l~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          246 MELFAAQAKEVDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHHHHHCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHHHHHhCCCCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            01377888999999999  554 2467889999999999999999999  8876654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.73  E-value=1e-17  Score=169.35  Aligned_cols=155  Identities=19%  Similarity=0.275  Sum_probs=113.7

Q ss_pred             eccccccC-chHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 015895           94 AVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (398)
Q Consensus        94 g~G~d~iD-~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (398)
                      ++|+..+. ..+..+.+|+|+|++.+.+.+..+...+..-++.+.+.      +           ..+.++.||+|||+|
T Consensus       156 ttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~------r-----------atg~~L~GktVgIiG  218 (436)
T 3h9u_A          156 TTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIK------R-----------ATDVMIAGKTACVCG  218 (436)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH------H-----------HHCCCCTTCEEEEEC
T ss_pred             CcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHHH------H-----------hcCCcccCCEEEEEe
Confidence            45554442 33456789999999875555544433332222222221      1           124679999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      +|.||+.+|+++ ++|||+|++||+++......         ...+     + ...+++|++++||+|++    ++.|++
T Consensus       219 ~G~IG~~vA~~L-ka~Ga~Viv~D~~p~~a~~A---------~~~G-----~-~~~sL~eal~~ADVVil----t~gt~~  278 (436)
T 3h9u_A          219 YGDVGKGCAAAL-RGFGARVVVTEVDPINALQA---------AMEG-----Y-QVLLVEDVVEEAHIFVT----TTGNDD  278 (436)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTT-----C-EECCHHHHTTTCSEEEE----CSSCSC
T ss_pred             eCHHHHHHHHHH-HHCCCEEEEECCChhhhHHH---------HHhC-----C-eecCHHHHHhhCCEEEE----CCCCcC
Confidence            999999999997 89999999999987543221         0111     2 23589999999999996    346899


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHH
Q 015895          253 LINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~-vde~aL~~a  285 (398)
                      +|+++.|+.||+|++|||+|||.+ ||.++|.+.
T Consensus       279 iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          279 IITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             SBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             ccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            999999999999999999999997 999999764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.71  E-value=1.2e-16  Score=160.53  Aligned_cols=243  Identities=14%  Similarity=0.169  Sum_probs=152.7

Q ss_pred             CCchHHHHHHHhCCCeEEEecCC--CCCCCHHHHH-----------HHhcCCCcEEEecCCccc----cHHHHHHhhccC
Q 015895           24 MPGTRWINLLIEQDCRVEICTQK--KTILSVEDII-----------ALIGDKCDGVIGQLTEDW----GETLFAALSRAG   86 (398)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~eel~-----------~~~~~~~d~vi~~~~~~~----~~~~l~~~~~l~   86 (398)
                      +.|+ ..+.|.+.|+++.+....  ...++.++..           +.+. ++|+|+.. .+++    +++.++.++. +
T Consensus        18 l~P~-~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~-~adiil~v-~~p~~~~~~~~~i~~l~~-~   93 (384)
T 1l7d_A           18 ISPE-VVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALS-QADVVWKV-QRPMTAEEGTDEVALIKE-G   93 (384)
T ss_dssp             CCHH-HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHS-SCSEEEEE-ECCCCGGGSCCGGGGSCT-T
T ss_pred             CCHH-HHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhc-CCCEEEEe-cCcccccCCHHHHHhhcc-C
Confidence            4443 678888889888664322  1245666665           3344 48988765 3455    6778888865 3


Q ss_pred             CceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccC--CCCCCcccc-ccc
Q 015895           87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD--GWLPNLFVG-NLL  163 (398)
Q Consensus        87 ~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~--~w~~~~~~g-~~l  163 (398)
                      .++++....+.|+.+++++.++||.++|. +.....+++..+. +|+..+.+ .....+..+.|.  .|.+....+ .++
T Consensus        94 ~~~i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l  170 (384)
T 1l7d_A           94 AVLMCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTV  170 (384)
T ss_dssp             CEEEEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEE
T ss_pred             CEEEEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCC
Confidence            48999999999999999999999999985 3223323333333 23333332 222333333331  122211112 368


Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hc----CCCCcccccc---------
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---AN----GEQPVTWKRA---------  227 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~---------  227 (398)
                      .|++|+|+|+|.||+.+++.+ +++|++|+++|+++.... . .+.++....   ..    +...-++...         
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a-~~~Ga~V~~~d~~~~~~~-~-~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATA-KRLGAVVMATDVRAATKE-Q-VESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCSTTHH-H-HHHTTCEECCC-----------------------CCH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H-HHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            999999999999999999996 899999999999875421 1 111111000   00    0000000000         


Q ss_pred             -CCHHHHhhcCCEEEEcc--CCChhhhhhccHHHHhcCCCCcEEEEcC--CCchh
Q 015895          228 -SSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (398)
Q Consensus       228 -~sl~ell~~aDiV~l~~--Plt~~T~~li~~~~~~~mk~gailIN~a--RG~~v  277 (398)
                       ..++++++.+|+|+.++  |.+ .+.++++++.++.||+|+++||++  ||+.+
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence             11778889999999887  443 246788999999999999999999  76643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.70  E-value=6.2e-17  Score=163.61  Aligned_cols=155  Identities=15%  Similarity=0.184  Sum_probs=111.9

Q ss_pred             eeccccccC-chHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 015895           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (398)
Q Consensus        93 ~g~G~d~iD-~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (398)
                      .++|+-.+- ........+++.|+.+    ++..+-+-....+.+.+..+.  .+           ..+.++.|||+||+
T Consensus       191 TtTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI--~R-----------atg~~L~GKTVgVI  253 (464)
T 3n58_A          191 TTTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGI--RR-----------GTDVMMAGKVAVVC  253 (464)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHH--HH-----------HHCCCCTTCEEEEE
T ss_pred             cccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHH--HH-----------hcCCcccCCEEEEE
Confidence            355655431 2223345689999865    445554444444444333221  11           13468999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhh
Q 015895          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (398)
Q Consensus       172 GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~  251 (398)
                      |+|.||+.+|+++ ++|||+|+++|+++....+..         .     .++. ..++++++++||+|+.+.    .|+
T Consensus       254 G~G~IGr~vA~~l-rafGa~Viv~d~dp~~a~~A~---------~-----~G~~-vv~LeElL~~ADIVv~at----gt~  313 (464)
T 3n58_A          254 GYGDVGKGSAQSL-AGAGARVKVTEVDPICALQAA---------M-----DGFE-VVTLDDAASTADIVVTTT----GNK  313 (464)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHH---------H-----TTCE-ECCHHHHGGGCSEEEECC----SSS
T ss_pred             CcCHHHHHHHHHH-HHCCCEEEEEeCCcchhhHHH---------h-----cCce-eccHHHHHhhCCEEEECC----CCc
Confidence            9999999999997 899999999998775432210         0     1122 358999999999999864    478


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 015895          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (398)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~  284 (398)
                      ++|+++.|+.||+|++|||++||.+ ||.++|.+
T Consensus       314 ~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          314 DVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             SSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             cccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            9999999999999999999999998 99988864

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.64  E-value=1.4e-17  Score=168.30  Aligned_cols=213  Identities=14%  Similarity=0.195  Sum_probs=155.2

Q ss_pred             ceEEEeeccccccCchHhh-----hcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCC----cc
Q 015895           88 KAFSNMAVGYNNVDVNAAN-----KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN----LF  158 (398)
Q Consensus        88 k~i~~~g~G~d~iD~~~~~-----~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~----~~  158 (398)
                      +.|.+.|+|+|++++.++.     ++++.++|.+|+ ..+++++.+..++.+.|++....... .+.   |...    ..
T Consensus        83 ~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~---~s~a~~av~~  157 (404)
T 1gpj_A           83 RHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGA---VSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSC---CSHHHHHHHH
T ss_pred             hhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCC---ccHHHHHHHH
Confidence            7788889999999999887     889999999998 57899999999999999886553222 222   3211    00


Q ss_pred             cc---cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 015895          159 VG---NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (398)
Q Consensus       159 ~g---~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell  234 (398)
                      .+   .++.|++|+|||+|.||+.+++.+ +.+|+ +|+++|++.... +.+.+.+       +..   .....++.+++
T Consensus       158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~l~~~l  225 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDL-------GGE---AVRFDELVDHL  225 (404)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHH-------TCE---ECCGGGHHHHH
T ss_pred             HHHHhccccCCEEEEEChHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCc---eecHHhHHHHh
Confidence            01   158999999999999999999997 78999 999999987542 1111111       211   11124678888


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhc--CC----CCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC-CCC
Q 015895          235 READVISLHPVLDKTTYHLINKERLAT--MK----KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKP  307 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~--mk----~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~-~~~  307 (398)
                      ..+|+|+.|+|.   +..+++++.++.  ||    ++.++||++                             +|. .++
T Consensus       226 ~~aDvVi~at~~---~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~  273 (404)
T 1gpj_A          226 ARSDVVVSATAA---PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEE  273 (404)
T ss_dssp             HTCSEEEECCSS---SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCT
T ss_pred             cCCCEEEEccCC---CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCc
Confidence            999999999874   456677777776  42    456666665                             354 356


Q ss_pred             CCCCCCceEE--cCCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCCC
Q 015895          308 GLSEMKNAIV--VPHIASASKWTRE----------GMATLAALNVLGKIKGYPI  349 (398)
Q Consensus       308 ~L~~~~nvil--TPHia~~T~ea~~----------~~~~~~~~ni~~~l~g~~~  349 (398)
                      +++++|||++  |||+++.+.++++          .+..+.+++...|+.+.++
T Consensus       274 ~l~~l~~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~~  327 (404)
T 1gpj_A          274 GVENIEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLKE  327 (404)
T ss_dssp             TGGGSTTEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8999999999  9999998887654          4555666777777766543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.63  E-value=5.1e-16  Score=156.65  Aligned_cols=153  Identities=19%  Similarity=0.318  Sum_probs=106.6

Q ss_pred             ecccccc-CchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 015895           94 AVGYNNV-DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (398)
Q Consensus        94 g~G~d~i-D~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIG  172 (398)
                      ++|+-.+ ......+..++|.|+.++.+.+--+-..+    +...+..+.  .+           ..+..+.||+++|+|
T Consensus       165 ttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yG----t~~s~~~gi--~r-----------at~~~L~GktV~ViG  227 (435)
T 3gvp_A          165 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYC----CRESILDGL--KR-----------TTDMMFGGKQVVVCG  227 (435)
T ss_dssp             HHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHH----HHHHHHHHH--HH-----------HHCCCCTTCEEEEEC
T ss_pred             chhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhh----hHHHHHHHH--HH-----------hhCceecCCEEEEEe
Confidence            4555443 22233456799999988555443332222    111111110  11           124579999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhh
Q 015895          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (398)
Q Consensus       173 lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~  252 (398)
                      +|.||+.+|+++ ++|||+|+++|+++.......         ..+     + ...++++++++||+|++|    +.|++
T Consensus       228 ~G~IGk~vA~~L-ra~Ga~Viv~D~dp~ra~~A~---------~~G-----~-~v~~Leeal~~ADIVi~a----tgt~~  287 (435)
T 3gvp_A          228 YGEVGKGCCAAL-KAMGSIVYVTEIDPICALQAC---------MDG-----F-RLVKLNEVIRQVDIVITC----TGNKN  287 (435)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHH---------HTT-----C-EECCHHHHTTTCSEEEEC----SSCSC
T ss_pred             eCHHHHHHHHHH-HHCCCEEEEEeCChhhhHHHH---------HcC-----C-EeccHHHHHhcCCEEEEC----CCCcc
Confidence            999999999997 899999999999875322210         011     2 235899999999999995    46889


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 015895          253 LINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (398)
Q Consensus       253 li~~~~~~~mk~gailIN~aRG~~-vde~aL~  283 (398)
                      +|+++.|+.||+|+++||++||++ +|.++|.
T Consensus       288 lI~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          288 VVTREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             SBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             cCCHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            999999999999999999999998 7776663

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.36  E-value=1.5e-12  Score=126.61  Aligned_cols=120  Identities=13%  Similarity=0.065  Sum_probs=92.7

Q ss_pred             ccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       158 ~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .......-++|||||+|.||+.+|++| ...|++|.+||+++.... .        +...+     .....+++++++.|
T Consensus        14 ~~~~~~~m~~I~iIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~-~--------l~~~g-----~~~~~~~~~~~~~a   78 (310)
T 3doj_A           14 LVPRGSHMMEVGFLGLGIMGKAMSMNL-LKNGFKVTVWNRTLSKCD-E--------LVEHG-----ASVCESPAEVIKKC   78 (310)
T ss_dssp             ----CCCSCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGGH-H--------HHHTT-----CEECSSHHHHHHHC
T ss_pred             cCcccccCCEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-H--------HHHCC-----CeEcCCHHHHHHhC
Confidence            344556678999999999999999998 578999999999876421 1        11112     23356899999999


Q ss_pred             CEEEEccCCChhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          238 DVISLHPVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      |+|++|+|....++.++  .++.+..+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        79 Dvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           79 KYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             SEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            99999999766777766  24566789999999999999999999999988875443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.35  E-value=1.8e-12  Score=125.92  Aligned_cols=115  Identities=21%  Similarity=0.229  Sum_probs=94.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      |+||+||+|.||..+|++| ..-|++|.+||+++.+.. .        +...|     .....++.|+++.||+|++|+|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L-~~~G~~v~v~dr~~~~~~-~--------l~~~G-----a~~a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNL-LKAGYLLNVFDLVQSAVD-G--------LVAAG-----ASAARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSSHHHHH-H--------HHHTT-----CEECSSHHHHHTTCSEEEECCS
T ss_pred             CEEEEeeehHHHHHHHHHH-HhCCCeEEEEcCCHHHHH-H--------HHHcC-----CEEcCCHHHHHhcCCceeecCC
Confidence            5899999999999999998 578999999999986532 2        11223     3446789999999999999999


Q ss_pred             CChhhhhhccH--HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec
Q 015895          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (398)
Q Consensus       246 lt~~T~~li~~--~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD  297 (398)
                      ..+.++.++..  ..++.+++|.++||+++..+-+...+.+.+++..+  ..+|
T Consensus        69 ~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~--~~lD  120 (300)
T 3obb_A           69 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLD  120 (300)
T ss_dssp             CHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTC--EEEE
T ss_pred             chHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--EEEe
Confidence            98888887743  47888999999999999999999999999998755  4455

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.32  E-value=1.3e-11  Score=120.16  Aligned_cols=145  Identities=14%  Similarity=0.052  Sum_probs=91.2

Q ss_pred             HHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh-hhHHHHHHhhhhhhhhhcCC
Q 015895          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGE  219 (398)
Q Consensus       142 ~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~  219 (398)
                      +++++.+.|.+|.+...+ .....++|||||+|.||+.+|+.| ...|+ +|++||+++ ....+.        +...+ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~-~~~~~~~I~iIG~G~mG~~~A~~L-~~~G~~~V~~~dr~~~~~~~~~--------~~~~g-   70 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLY-FQSNAMKLGFIGFGEAASAIASGL-RQAGAIDMAAYDAASAESWRPR--------AEELG-   70 (312)
T ss_dssp             ------------------------CEEEEECCSHHHHHHHHHH-HHHSCCEEEEECSSCHHHHHHH--------HHHTT-
T ss_pred             CcccccccccccCccccc-ccCCCCEEEEECccHHHHHHHHHH-HHCCCCeEEEEcCCCCHHHHHH--------HHHCC-
Confidence            456777887666543222 234567999999999999999998 56788 999999973 332222        11122 


Q ss_pred             CCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec--
Q 015895          220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD--  297 (398)
Q Consensus       220 ~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD--  297 (398)
                          .....+++++++.||+|++++|...... .+ ++....++++.++||+++.......++.+.+.+..+....+|  
T Consensus        71 ----~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~p  144 (312)
T 3qsg_A           71 ----VSCKASVAEVAGECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVA  144 (312)
T ss_dssp             ----CEECSCHHHHHHHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ----CEEeCCHHHHHhcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEecc
Confidence                2334689999999999999999765544 33 667788999999999999999999999988876522223445  


Q ss_pred             cCCCCC
Q 015895          298 VFEDEP  303 (398)
Q Consensus       298 V~~~EP  303 (398)
                      |+..+|
T Consensus       145 v~g~~~  150 (312)
T 3qsg_A          145 VMSAVK  150 (312)
T ss_dssp             ECSCST
T ss_pred             ccCCch
Confidence            455443

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.32  E-value=3.9e-12  Score=124.25  Aligned_cols=123  Identities=15%  Similarity=0.109  Sum_probs=95.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ....++|||||+|.||+.+|+.| ...|++|.+||+++... +.        +...+     .....++++++++||+|+
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~--------l~~~g-----~~~~~~~~e~~~~aDvVi   92 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRL-CEAGYALQVWNRTPARA-AS--------LAALG-----ATIHEQARAAARDADIVV   92 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHH-HHTTCEEEEECSCHHHH-HH--------HHTTT-----CEEESSHHHHHTTCSEEE
T ss_pred             ccCCCEEEEECccHHHHHHHHHH-HhCCCeEEEEcCCHHHH-HH--------HHHCC-----CEeeCCHHHHHhcCCEEE
Confidence            35678999999999999999998 57899999999987642 21        11112     334568999999999999


Q ss_pred             EccCCChhhhhhccH-HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccC
Q 015895          242 LHPVLDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (398)
Q Consensus       242 l~~Plt~~T~~li~~-~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~  299 (398)
                      +++|....++.++.. +.+..+++|.++||++++.+.+.+.+.+.+++..+......|+
T Consensus        93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  151 (320)
T 4dll_A           93 SMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVS  151 (320)
T ss_dssp             ECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             EECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCc
Confidence            999976677777643 5677899999999999999999999999998765544333334

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.31  E-value=3.4e-12  Score=123.97  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .++..++|||||+|.||+.+|++| ...|++|++||+++.... .+        ...+     .....++++++++||+|
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~-~~--------~~~g-----~~~~~~~~e~~~~aDvV   69 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVL-LKQGKRVAIWNRSPGKAA-AL--------VAAG-----AHLCESVKAALSASPAT   69 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHHH-HH--------HHHT-----CEECSSHHHHHHHSSEE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HH--------HHCC-----CeecCCHHHHHhcCCEE
Confidence            456778999999999999999998 578999999999876432 11        1112     23346899999999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++++|....++.++..+.+..+++|.++||++++.+.+.+++.+.+++..+.
T Consensus        70 i~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           70 IFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             EECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             EEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            9999987778888853345667899999999999999999999999875443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.31  E-value=4e-12  Score=123.20  Aligned_cols=120  Identities=13%  Similarity=0.168  Sum_probs=93.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||..+|++| ...|++|++||+++.... .        +..     .+.....++.|+++.||+|++++|
T Consensus         6 ~kIgfIGLG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~--------l~~-----~G~~~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEIL-LEAGYELVVWNRTASKAE-P--------LTK-----LGATVVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEC-------C-T--------TTT-----TTCEECSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEecHHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-H--------HHH-----cCCeEeCCHHHHHhcCCceeeecc
Confidence            5799999999999999998 578999999999876421 1        111     234456789999999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~  300 (398)
                      ..+..+.++..+.+..+++|.++||++...+-+.+.+.+.+.+..+...-.=|+.
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsG  125 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFA  125 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEEC
T ss_pred             chhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCC
Confidence            8888888888889999999999999999999999999999998765443333443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.27  E-value=4.2e-10  Score=112.26  Aligned_cols=249  Identities=12%  Similarity=0.129  Sum_probs=136.8

Q ss_pred             eCCCCCeEEEEeCC---------CCchHHHHHHHhCCCeEEEecCC--CCCCCHHHHHHHhc-----CCCcEEEecCCcc
Q 015895           10 WNPNGKYRVVSTKP---------MPGTRWINLLIEQDCRVEICTQK--KTILSVEDIIALIG-----DKCDGVIGQLTED   73 (398)
Q Consensus        10 ~~~~~~~kvlv~~~---------~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~eel~~~~~-----~~~d~vi~~~~~~   73 (398)
                      ..|-++|+|=|-..         +.|+ ..+.|.+.|++|.+-...  ....+.++..+.=.     +.+|.|+. ... 
T Consensus        17 ~~~~~~m~IgvpkE~~~~E~RValtP~-~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlk-Vk~-   93 (381)
T 3p2y_A           17 QGPGSMTLIGVPRESAEGERRVALVPK-VVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVK-VNP-   93 (381)
T ss_dssp             ---CTTCEEEECCCCSTTCCCCSSCHH-HHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEEC-SSC-
T ss_pred             cCCCcceEEEEEecCCCCCceecCCHH-HHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEE-eCC-
Confidence            34556666655322         3333 678888889988765432  23567777764211     12455442 222 


Q ss_pred             ccHHHHHHhhccCCceEEEeeccccccCchHhhhcCceEEecCCCC----Cc------hHHHHHHHHHHHHhhchHHHHH
Q 015895           74 WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVL----TE------TTAELAASLSLAAARRIVEADE  143 (398)
Q Consensus        74 ~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~----~~------~vAE~~l~l~L~~~R~~~~~~~  143 (398)
                      .+++.++.++. |-.++...-...|.=-++++.++||...----..    +.      +++|.+=      .+-+..+.+
T Consensus        94 p~~~e~~~l~~-g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAG------y~Av~~aa~  166 (381)
T 3p2y_A           94 PTSDEISQLKP-GSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAG------YKAVLLGAS  166 (381)
T ss_dssp             CCHHHHTTSCT-TCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHH------HHHHHHHHH
T ss_pred             CChhHHhhccC-CCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHH------HHHHHHHHH
Confidence            23455566654 2233333333233323567788999886522221    11      2222222      111111111


Q ss_pred             HHHcCccCCCCCCcccc-cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC--CC
Q 015895          144 FMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG--EQ  220 (398)
Q Consensus       144 ~~~~g~~~~w~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~  220 (398)
                      .  -++   ..+....+ ..+.+++|+|||+|.||..+|+.+ +++|++|++||+++... +. .+.++.......  ..
T Consensus       167 ~--l~~---~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~-~~~lGa~~~~l~~~~~  238 (381)
T 3p2y_A          167 L--STR---FVPMLTTAAGTVKPASALVLGVGVAGLQALATA-KRLGAKTTGYDVRPEVA-EQ-VRSVGAQWLDLGIDAA  238 (381)
T ss_dssp             H--CSS---CSSCEECSSCEECCCEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSGGGH-HH-HHHTTCEECCCC----
T ss_pred             H--hhh---hhhhhhcccCCcCCCEEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HHHcCCeEEecccccc
Confidence            1  111   11111111 257899999999999999999996 89999999999998642 11 111111000000  00


Q ss_pred             Cc-cc----------cccCCHHHHhhcCCEEEEcc--CCChhhhhhccHHHHhcCCCCcEEEEcC--CCchh
Q 015895          221 PV-TW----------KRASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (398)
Q Consensus       221 ~~-~~----------~~~~sl~ell~~aDiV~l~~--Plt~~T~~li~~~~~~~mk~gailIN~a--RG~~v  277 (398)
                      .. ++          ....++++++++||+|+.++  |. ..+..+++++.++.||+|+++||+|  +|+.+
T Consensus       239 ~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          239 GEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             ccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence            00 00          01235788999999998775  54 3467789999999999999999997  55544

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.26  E-value=3.4e-11  Score=119.74  Aligned_cols=122  Identities=16%  Similarity=0.283  Sum_probs=96.9

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC---CE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA---DV  239 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a---Di  239 (398)
                      +.+++|||||+|.||+.+|++| ...|++|.+||+++... +.        +...+     .....+++|+++.|   |+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L-~~~G~~V~v~dr~~~~~-~~--------l~~~g-----~~~~~s~~e~~~~a~~~Dv   84 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRL-RKGGHECVVYDLNVNAV-QA--------LEREG-----IAGARSIEEFCAKLVKPRV   84 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HH--------HHTTT-----CBCCSSHHHHHHHSCSSCE
T ss_pred             hcCCEEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HH--------HHHCC-----CEEeCCHHHHHhcCCCCCE
Confidence            5678999999999999999998 57899999999987642 21        11122     22346899999999   99


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~  301 (398)
                      |++++|.. .+..++ .+.+..+++|.++||++++...+...+.+.+++..+......|+..
T Consensus        85 Vi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           85 VWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             EEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             EEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence            99999976 777777 5678889999999999999999999999999887766555555543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.25  E-value=8.4e-11  Score=114.74  Aligned_cols=152  Identities=16%  Similarity=0.091  Sum_probs=102.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhcCC
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREAD  238 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e-ll~~aD  238 (398)
                      ++..++|||||+|.||+.+|+.+ +..|+  +|++||+++.....         ....|..   .....++++ ++++||
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~~~---------a~~~G~~---~~~~~~~~~~~~~~aD   96 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISK---------AVDLGII---DEGTTSIAKVEDFSPD   96 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHH---------HHHTTSC---SEEESCTTGGGGGCCS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCCCEEEEEECCHHHHHH---------HHHCCCc---chhcCCHHHHhhccCC
Confidence            35568999999999999999998 67888  99999998754211         1112211   112356788 899999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCC---CC-CCCCCCCCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PY-MKPGLSEMKN  314 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~E---P~-~~~~L~~~~n  314 (398)
                      +|++|+|.. .+..++ ++....+++++++++++.......+++.+.+...-+.+.=  ++..|   |. ....|+....
T Consensus        97 vVilavp~~-~~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~hP--m~G~e~sG~~~A~~~Lf~g~~  172 (314)
T 3ggo_A           97 FVMLSSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHP--IAGTEKSGVEYSLDNLYEGKK  172 (314)
T ss_dssp             EEEECSCGG-GHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEE--CCCCCCCSGGGCCTTTTTTCE
T ss_pred             EEEEeCCHH-HHHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecCc--ccCCcccchhhhhhhhhcCCE
Confidence            999999964 445555 5667789999999999987655566677766542222222  33333   11 1235788888


Q ss_pred             eEEcCCCCCCcHHHHHH
Q 015895          315 AIVVPHIASASKWTREG  331 (398)
Q Consensus       315 vilTPHia~~T~ea~~~  331 (398)
                      +++||+-+ .+.++.+.
T Consensus       173 ~il~~~~~-~~~~~~~~  188 (314)
T 3ggo_A          173 VILTPTKK-TDKKRLKL  188 (314)
T ss_dssp             EEECCCTT-SCHHHHHH
T ss_pred             EEEEeCCC-CCHHHHHH
Confidence            99999843 34444433

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.23  E-value=1.9e-11  Score=118.00  Aligned_cols=119  Identities=23%  Similarity=0.258  Sum_probs=93.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      .++|||||+|.||+.+|++| ...|++|.+||+++.... .        +...+     .....+++++++ ||+|++++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~-~--------~~~~g-----~~~~~~~~~~~~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRM-TEWPGGVTVYDIRIEAMT-P--------LAEAG-----ATLADSVADVAA-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHH-TTSTTCEEEECSSTTTSH-H--------HHHTT-----CEECSSHHHHTT-SSEEEECC
T ss_pred             CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-H--------HHHCC-----CEEcCCHHHHHh-CCEEEEEC
Confidence            36899999999999999998 578999999999876421 1        11112     233468999999 99999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~  300 (398)
                      |.+..++.++ ++....+++|.++||++++.+...+.+.+.+.+..+......|+.
T Consensus        79 p~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g  133 (296)
T 3qha_A           79 LDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSG  133 (296)
T ss_dssp             SSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEES
T ss_pred             CChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcC
Confidence            9877778777 677888999999999999999999999999987654433333443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.23  E-value=2.4e-11  Score=116.45  Aligned_cols=112  Identities=18%  Similarity=0.087  Sum_probs=90.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|++| ...|++|.+||+++.... .        +...+     .....+++|++++||+|++|+|
T Consensus         2 ~~i~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~-~--------~~~~g-----~~~~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNL-VKAGCSVTIWNRSPEKAE-E--------LAALG-----AERAATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGGH-H--------HHHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-H--------HHHCC-----CeecCCHHHHHhcCCEEEEEcC
Confidence            6899999999999999998 578999999999876421 1        11112     2345689999999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ....++.++.  ++.+..+++|.++||+++..+.+.+.+.+.+++..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            7667777762  5567889999999999999999999999998876543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.22  E-value=1.3e-10  Score=110.72  Aligned_cols=142  Identities=17%  Similarity=0.159  Sum_probs=99.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aDiV~l  242 (398)
                      ++|||||+|.||+.+|+.| ...|+  +|++||+++... +.        ....+...   ....+++++++ +||+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l-~~~g~~~~V~~~d~~~~~~-~~--------~~~~g~~~---~~~~~~~~~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESI-SK--------AVDLGIID---EGTTSIAKVEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHH-HH--------HHHTTSCS---EEESCGGGGGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHH-HhcCCCcEEEEEeCCHHHH-HH--------HHHCCCcc---cccCCHHHHhcCCCCEEEE
Confidence            5899999999999999998 57787  999999987542 11        11122211   11346778888 9999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC---CC-CCCCCCCCceEEc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP---YM-KPGLSEMKNAIVV  318 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP---~~-~~~L~~~~nvilT  318 (398)
                      |+|.. .+..++. +....++++.++++++++.....+.+.+.+.++.+.+  --++..|.   .. ..+|+...+++++
T Consensus        69 avp~~-~~~~v~~-~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~  144 (281)
T 2g5c_A           69 SSPVR-TFREIAK-KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILT  144 (281)
T ss_dssp             CSCHH-HHHHHHH-HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEEC
T ss_pred             cCCHH-HHHHHHH-HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEe
Confidence            99953 5566664 4667799999999999988776778888887642221  12333332   11 2357777789999


Q ss_pred             CCCCCC
Q 015895          319 PHIASA  324 (398)
Q Consensus       319 PHia~~  324 (398)
                      ||.++.
T Consensus       145 ~~~~~~  150 (281)
T 2g5c_A          145 PTKKTD  150 (281)
T ss_dssp             CCSSSC
T ss_pred             cCCCCC
Confidence            997654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.22  E-value=8.1e-11  Score=114.89  Aligned_cols=135  Identities=17%  Similarity=0.087  Sum_probs=94.7

Q ss_pred             CCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccC-
Q 015895          153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS-  228 (398)
Q Consensus       153 w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  228 (398)
                      |.++.++..  ..++|||||+|.||+.+|+.| ...| .+|++||+++.  ...+...+.    +...+.       .. 
T Consensus        14 ~~~~~~~~~--M~m~IgvIG~G~mG~~lA~~L-~~~G~~~V~~~dr~~~~~~~~~~~~~~----~~~~g~-------~~~   79 (317)
T 4ezb_A           14 GTENLYFQS--MMTTIAFIGFGEAAQSIAGGL-GGRNAARLAAYDLRFNDPAASGALRAR----AAELGV-------EPL   79 (317)
T ss_dssp             -CCCHHHHT--SCCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECGGGGCTTTHHHHHHH----HHHTTC-------EEE
T ss_pred             CcccCcccc--cCCeEEEECccHHHHHHHHHH-HHcCCCeEEEEeCCCccccchHHHHHH----HHHCCC-------CCC
Confidence            555544321  237899999999999999998 5889 99999999862  101110010    111221       35 


Q ss_pred             CHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCC
Q 015895          229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (398)
Q Consensus       229 sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP  303 (398)
                      ++++++++||+|++++|.......+  ++....+++|.++||+++..+...+.+.+.+++..+....--|+.++|
T Consensus        80 s~~e~~~~aDvVi~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~  152 (317)
T 4ezb_A           80 DDVAGIACADVVLSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP  152 (317)
T ss_dssp             SSGGGGGGCSEEEECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred             CHHHHHhcCCEEEEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence            7888999999999999976655544  677888999999999999999999999999987544332223555433

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.21  E-value=1.2e-10  Score=115.25  Aligned_cols=109  Identities=23%  Similarity=0.297  Sum_probs=87.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aDiV  240 (398)
                      ++.||||+|+|+|+||+.+|+++ ++|||+|+++|+++..  ..+.+.+       +     .. ..+.+++++ .||++
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l-~~~GakVvvsD~~~~~--~~~a~~~-------g-----a~-~v~~~ell~~~~DIl  235 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTER--VAHAVAL-------G-----HT-AVALEDVLSTPCDVF  235 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH--HHHHHHT-------T-----CE-ECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEeCCccH--HHHHHhc-------C-----CE-EeChHHhhcCcccee
Confidence            79999999999999999999997 7999999999998653  2221111       1     11 236678887 99999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      +-|     .+.++|+.+.++.|| ..+++|.+++.+.++++ .++|+++++..
T Consensus       236 iP~-----A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIlv  281 (355)
T 1c1d_A          236 APC-----AMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGILY  281 (355)
T ss_dssp             EEC-----SCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCEE
T ss_pred             cHh-----HHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEEE
Confidence            843     578999999999998 78999999999999777 58888887543

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.19  E-value=4.5e-10  Score=107.63  Aligned_cols=151  Identities=13%  Similarity=0.030  Sum_probs=101.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh---hhhhhcC--CCC-------ccccccCCHHHH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG---QFLKANG--EQP-------VTWKRASSMDEV  233 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~--~~~-------~~~~~~~sl~el  233 (398)
                      ++|+|||+|.||+.+|+.+ ...|++|++||++..... ...+...   ......+  ...       .......+++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQT-AFHGFAVTAYDINTDALD-AAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHH-HHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            6899999999999999998 578999999999876421 1111000   0000000  000       011234688899


Q ss_pred             hhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCC
Q 015895          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (398)
Q Consensus       234 l~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~  313 (398)
                      +++||+|+.++|.+.+....+-++....+++++++++.+.+-  ...++.+++... -...++..|.       |.+..+
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~  152 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL--LPSDLVGYTGRG-DKFLALHFAN-------HVWVNN  152 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHHHHSCG-GGEEEEEECS-------STTTSC
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCC-cceEEEccCC-------CcccCc
Confidence            999999999999887777777778888899999999655543  456777777543 3456666553       345677


Q ss_pred             ceEEcCCCCCCcHHHH
Q 015895          314 NAIVVPHIASASKWTR  329 (398)
Q Consensus       314 nvilTPHia~~T~ea~  329 (398)
                      .+.++||- ..+.+..
T Consensus       153 lvevv~~~-~t~~~~~  167 (283)
T 4e12_A          153 TAEVMGTT-KTDPEVY  167 (283)
T ss_dssp             EEEEEECT-TSCHHHH
T ss_pred             eEEEEeCC-CCCHHHH
Confidence            88999983 3344443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.18  E-value=2.5e-11  Score=116.35  Aligned_cols=112  Identities=16%  Similarity=0.084  Sum_probs=89.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|++| ...|++|++||+++.... .+        ...+     .....+++|+++.||+|++++|
T Consensus         2 ~~I~iiG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~-~~--------~~~g-----~~~~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANL-VRAGFDVTVWNRNPAKCA-PL--------VALG-----ARQASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHHTCCEEEECSSGGGGH-HH--------HHHT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHH-HH--------HHCC-----CeecCCHHHHHHcCCEEEEEcC
Confidence            4799999999999999998 467999999999876421 11        1112     2334689999999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ....++.++.  ++.+..+++|.++||++++.+.+.+.+.+.+.+..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           67 DPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            7667777662  4566789999999999999999999999988875443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.18  E-value=2.6e-11  Score=117.24  Aligned_cols=114  Identities=19%  Similarity=0.142  Sum_probs=89.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sl~ell~~aDiV~l  242 (398)
                      ..++|||||+|.||+.+|++| ...|.+|.+||+++... +.        +...+     ... ..+++|+++.||+|++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~--------~~~~g-----~~~~~~~~~e~~~~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSC-LRAGLSTWGADLNPQAC-AN--------LLAEG-----ACGAAASAREFAGVVDALVI   70 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HH--------HHHTT-----CSEEESSSTTTTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HH--------HHHcC-----CccccCCHHHHHhcCCEEEE
Confidence            346899999999999999998 57899999999987542 21        11122     122 4578899999999999


Q ss_pred             ccCCChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          243 HPVLDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       243 ~~Plt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++|.+..++.++.  ++.+..+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             ECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            9997667777653  4466789999999999999999999999998875443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.17  E-value=2.1e-11  Score=115.66  Aligned_cols=196  Identities=17%  Similarity=0.120  Sum_probs=126.0

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC---CCcEEEecCCccccHHHHHHhhccCCceEEEeeccccccCchHhh
Q 015895           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGD---KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (398)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~---~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~  106 (398)
                      -..+++.|.+..+...   ..+++++.+.+..   .++++.+.  .++.++++..++++  +.+++...|+|.++.    
T Consensus        21 ~~~~~~~g~~~~y~~~---~~~~~~l~~~i~~l~~~~~G~~vt--~P~k~~i~~~~~~l--~~~a~~~gavn~i~~----   89 (263)
T 2d5c_A           21 AFALESLGLEGSYEAW---DTPLEALPGRLKEVRRAFRGVNLT--LPLKEAALAHLDWV--SPEAQRIGAVNTVLQ----   89 (263)
T ss_dssp             HHHHHHTTCCEEEEEE---ECCGGGHHHHHHHHHHHCSEEEEC--TTCTTGGGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHHcCCCCEEEEE---eCCHHHHHHHHHhccccCceEEEc--ccCHHHHHHHHHHH--hHHHHHhCCCCcEEc----
Confidence            3456667776655432   2345555554432   13444443  35567778778776  667777788998875    


Q ss_pred             hcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 015895          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (398)
Q Consensus       107 ~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~  186 (398)
                      +.|    +..|+|+..     .+++.++.|                      .+.+++| +++|||+|.||+.+|+.| .
T Consensus        90 ~~g----~~~g~ntd~-----~g~~~~l~~----------------------~~~~l~~-~v~iiG~G~~g~~~a~~l-~  136 (263)
T 2d5c_A           90 VEG----RLFGFNTDA-----PGFLEALKA----------------------GGIPLKG-PALVLGAGGAGRAVAFAL-R  136 (263)
T ss_dssp             ETT----EEEEECCHH-----HHHHHHHHH----------------------TTCCCCS-CEEEECCSHHHHHHHHHH-H
T ss_pred             cCC----eEEEeCCCH-----HHHHHHHHH----------------------hCCCCCC-eEEEECCcHHHHHHHHHH-H
Confidence            344    234555543     244444332                      1236889 999999999999999998 6


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCCh--hhhhhccHHHHhcCCC
Q 015895          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK--TTYHLINKERLATMKK  264 (398)
Q Consensus       187 ~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~--~T~~li~~~~~~~mk~  264 (398)
                      .+|++|.++||+.... +.+.+.+       +.     . ..+++++ +++|+|++++|...  ++...+.   ...+++
T Consensus       137 ~~g~~v~v~~r~~~~~-~~l~~~~-------~~-----~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~  198 (263)
T 2d5c_A          137 EAGLEVWVWNRTPQRA-LALAEEF-------GL-----R-AVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPE  198 (263)
T ss_dssp             HTTCCEEEECSSHHHH-HHHHHHH-------TC-----E-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCS
T ss_pred             HCCCEEEEEECCHHHH-HHHHHHh-------cc-----c-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCC
Confidence            7899999999987542 2221111       11     1 2467788 99999999999762  2334453   567899


Q ss_pred             CcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          265 EAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       265 gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      |.+++|++.+. .+. .|.+++++.
T Consensus       199 g~~viD~~~~p-~~t-~l~~~a~~~  221 (263)
T 2d5c_A          199 EGAAVDLVYRP-LWT-RFLREAKAK  221 (263)
T ss_dssp             SSEEEESCCSS-SSC-HHHHHHHHT
T ss_pred             CCEEEEeecCC-ccc-HHHHHHHHC
Confidence            99999999874 343 477766653

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.16  E-value=1.3e-10  Score=119.76  Aligned_cols=126  Identities=16%  Similarity=0.183  Sum_probs=96.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCCEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVIS  241 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~---~aDiV~  241 (398)
                      .++|||||+|.||+.+|++| ...|++|.+||+++.... .+        ...+..........+++|+++   .+|+|+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L-~~~G~~V~v~dr~~~~~~-~l--------~~~g~~g~~i~~~~s~~e~v~~l~~aDvVi   73 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKVD-DF--------LANEAKGTKVVGAQSLKEMVSKLKKPRRII   73 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHHH-HH--------HHTTTTTSSCEECSSHHHHHHTBCSSCEEE
T ss_pred             CCEEEEEChhHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HH--------HhcccCCCceeccCCHHHHHhhccCCCEEE
Confidence            36899999999999999998 578999999999886532 21        111111111222468899887   499999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~  301 (398)
                      +++|....++.++ ++....|++|.++||++++...+...+.+.+.+..+.....-|+..
T Consensus        74 l~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg  132 (484)
T 4gwg_A           74 LLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGG  132 (484)
T ss_dssp             ECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             EecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCC
Confidence            9999877888877 5778899999999999999999999999999887665544445543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.13  E-value=6.4e-11  Score=111.22  Aligned_cols=108  Identities=10%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             ccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH-------------HHHHHhhhhhhhh
Q 015895          149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-------------LEKFVTAYGQFLK  215 (398)
Q Consensus       149 ~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~-------------~~~~~~~~~~~~~  215 (398)
                      +|..|.+......++.+++|||||+|.||+.+|+.| ...|++|++||+++...             .+.+.       .
T Consensus         3 ~~~~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------~   74 (245)
T 3dtt_A            3 SDKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGAL-ADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWL-------P   74 (245)
T ss_dssp             ----------------CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHTCC-------CCHHHHG-------G
T ss_pred             cccccccccccccccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHH-------h
Confidence            344455555667889999999999999999999998 57899999999987641             11110       0


Q ss_pred             hcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHH-HhcCCCCcEEEEcC
Q 015895          216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCS  272 (398)
Q Consensus       216 ~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~-~~~mk~gailIN~a  272 (398)
                      ..+     .....+++|++++||+|++++|..... ..+. +. ...+ +|.++|+++
T Consensus        75 ~~~-----~~~~~~~~e~~~~aDvVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           75 EHP-----HVHLAAFADVAAGAELVVNATEGASSI-AALT-AAGAENL-AGKILVDIA  124 (245)
T ss_dssp             GST-----TCEEEEHHHHHHHCSEEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECC
T ss_pred             hcC-----ceeccCHHHHHhcCCEEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECC
Confidence            111     122357889999999999999965433 3332 22 2233 799999999

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.12  E-value=1.6e-10  Score=118.48  Aligned_cols=146  Identities=17%  Similarity=0.241  Sum_probs=100.7

Q ss_pred             eeccccccC-chHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 015895           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (398)
Q Consensus        93 ~g~G~d~iD-~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGII  171 (398)
                      .++|+..+. +....+..|+|.|+.+..+.+..+...+    +.       +.+.++-   |   ...+.++.||+++|+
T Consensus       209 TttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yG----t~-------~sl~dgi---~---r~tg~~L~GKtVvVt  271 (488)
T 3ond_A          209 TTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYG----CR-------HSLPDGL---M---RATDVMIAGKVAVVA  271 (488)
T ss_dssp             SHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHH----HH-------HHHHHHH---H---HHHCCCCTTCEEEEE
T ss_pred             ccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhcc----cc-------HHHHHHH---H---HHcCCcccCCEEEEE
Confidence            467777652 2233457799999977544432222211    11       1111111   1   013357999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhh
Q 015895          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (398)
Q Consensus       172 GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~  251 (398)
                      |+|.||+.+|++| +++|++|+++|+++....+.         ...+     + ...+++++++.+|+|+.+.    .+.
T Consensus       272 GaGgIG~aiA~~L-aa~GA~Viv~D~~~~~a~~A---------a~~g-----~-dv~~lee~~~~aDvVi~at----G~~  331 (488)
T 3ond_A          272 GYGDVGKGCAAAL-KQAGARVIVTEIDPICALQA---------TMEG-----L-QVLTLEDVVSEADIFVTTT----GNK  331 (488)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTT-----C-EECCGGGTTTTCSEEEECS----SCS
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHH---------HHhC-----C-ccCCHHHHHHhcCEEEeCC----CCh
Confidence            9999999999998 79999999999987543221         0111     1 2357889999999999764    457


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCc
Q 015895          252 HLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      ++++.+.|+.||++++++|++++.
T Consensus       332 ~vl~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          332 DIIMLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             CSBCHHHHTTSCTTEEEEESSSTT
T ss_pred             hhhhHHHHHhcCCCeEEEEcCCCC
Confidence            889999999999999999999983

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.10  E-value=5e-10  Score=108.16  Aligned_cols=120  Identities=13%  Similarity=0.159  Sum_probs=86.8

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..++||||| +|.||+.+|+.| ...|++|.+||++..                           .+.+++++.||+|++
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l-~~~G~~V~~~~~~~~---------------------------~~~~~~~~~aDvVil   71 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDW---------------------------AVAESILANADVVIV   71 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCG---------------------------GGHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HhCCCeEEEEECCcc---------------------------cCHHHHhcCCCEEEE
Confidence            356899999 999999999998 688999999997542                           145678899999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCC--CCCCCCCCCceEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPH  320 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~--~~~~L~~~~nvilTPH  320 (398)
                      |+|.. .+..++. +....++++++++++++......+++.+.+.   .     ++....|.  +..+++....+++|||
T Consensus        72 avp~~-~~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~---~-----~~v~~hP~~g~~~~~~~g~~~~l~~~  141 (298)
T 2pv7_A           72 SVPIN-LTLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEVHT---G-----AVLGLHPMFGADIASMAKQVVVRCDG  141 (298)
T ss_dssp             CSCGG-GHHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHHCS---S-----EEEEEEECSCTTCSCCTTCEEEEEEE
T ss_pred             eCCHH-HHHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHhcC---C-----CEEeeCCCCCCCchhhcCCeEEEecC
Confidence            99964 4677763 4566799999999998877655555555432   1     22222332  1224666567999997


Q ss_pred             C
Q 015895          321 I  321 (398)
Q Consensus       321 i  321 (398)
                      -
T Consensus       142 ~  142 (298)
T 2pv7_A          142 R  142 (298)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.07  E-value=2.6e-10  Score=109.00  Aligned_cols=197  Identities=15%  Similarity=0.132  Sum_probs=120.2

Q ss_pred             EEEeCCCC----chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC----CCcEEEecCCccccHHHHHHhhccCCce
Q 015895           18 VVSTKPMP----GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGD----KCDGVIGQLTEDWGETLFAALSRAGGKA   89 (398)
Q Consensus        18 vlv~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~----~~d~vi~~~~~~~~~~~l~~~~~l~~k~   89 (398)
                      -|+-+|+.    +.-.-..+++.|.+..+....   .+++++.+.+..    +++++.+..  +..++++..+..+  .-
T Consensus        16 ~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~---~~~~~l~~~i~~l~~~~~~G~nvti--P~k~~i~~~ld~l--~~   88 (275)
T 2hk9_A           16 GVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFE---INPEELKKAFEGFKALKVKGINVTV--PFKEEIIPLLDYV--ED   88 (275)
T ss_dssp             EEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEE---CCGGGHHHHHHHHHHHTCCEEEECT--TSTTTTGGGCSEE--CH
T ss_pred             EEECCCcccccCHHHHHHHHHHcCCCcEEEEEE---CCHHHHHHHHHHHHhCCCCEEEECc--cCHHHHHHHHHHh--hH
Confidence            36666644    221224556667665543321   345555544421    367877754  3446666666655  55


Q ss_pred             EEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 015895           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (398)
Q Consensus        90 i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvG  169 (398)
                      .++...++|.++.    +.|-    ..|+|+...     +++.++.|                      .|.++.|++++
T Consensus        89 ~A~~~gavnti~~----~~g~----~~g~nTd~~-----G~~~~l~~----------------------~~~~~~~~~v~  133 (275)
T 2hk9_A           89 TAKEIGAVNTVKF----ENGK----AYGYNTDWI-----GFLKSLKS----------------------LIPEVKEKSIL  133 (275)
T ss_dssp             HHHHHTCCCEEEE----ETTE----EEEECCHHH-----HHHHHHHH----------------------HCTTGGGSEEE
T ss_pred             HHHHhCCcceEEe----eCCE----EEeecCCHH-----HHHHHHHH----------------------hCCCcCCCEEE
Confidence            5555566776653    3342    234455322     33333322                      11357889999


Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChh
Q 015895          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (398)
Q Consensus       170 IIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~  249 (398)
                      |||.|.+|+.+|+.| ...|++|.+|||+.... +.+.+       .     .+.....+++++++++|+|++++|....
T Consensus       134 iiGaG~~g~aia~~L-~~~g~~V~v~~r~~~~~-~~l~~-------~-----~g~~~~~~~~~~~~~aDiVi~atp~~~~  199 (275)
T 2hk9_A          134 VLGAGGASRAVIYAL-VKEGAKVFLWNRTKEKA-IKLAQ-------K-----FPLEVVNSPEEVIDKVQVIVNTTSVGLK  199 (275)
T ss_dssp             EECCSHHHHHHHHHH-HHHTCEEEEECSSHHHH-HHHTT-------T-----SCEEECSCGGGTGGGCSEEEECSSTTSS
T ss_pred             EECchHHHHHHHHHH-HHcCCEEEEEECCHHHH-HHHHH-------H-----cCCeeehhHHhhhcCCCEEEEeCCCCCC
Confidence            999999999999998 57788999999987542 21111       1     1122233778888999999999997542


Q ss_pred             --hhhhccHHHHhcCCCCcEEEEcCC
Q 015895          250 --TYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       250 --T~~li~~~~~~~mk~gailIN~aR  273 (398)
                        +...++   ++.+++|.+++|++.
T Consensus       200 ~~~~~~i~---~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          200 DEDPEIFN---YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             TTCCCSSC---GGGCCTTSEEEESSS
T ss_pred             CCCCCCCC---HHHcCCCCEEEEcCC
Confidence              223443   466899999999988

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.04  E-value=7.7e-10  Score=105.79  Aligned_cols=143  Identities=18%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|||||+|.||+.+|+.|++ ++|.+|++||+++.... ..        ...+...   ....++++++++||+|++++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~-~~--------~~~g~~~---~~~~~~~~~~~~aDvVilav   74 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRD-IA--------LERGIVD---EATADFKVFAALADVIILAV   74 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHH-HH--------HHTTSCS---EEESCTTTTGGGCSEEEECS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHH-HH--------HHcCCcc---cccCCHHHhhcCCCEEEEcC
Confidence            689999999999999999853 34789999999875421 11        1112110   12346778889999999999


Q ss_pred             CCChhhhhhccHHHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec---cCCC---CCCC-CCCCCCCCceE
Q 015895          245 VLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFED---EPYM-KPGLSEMKNAI  316 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~-mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD---V~~~---EP~~-~~~L~~~~nvi  316 (398)
                      |.. ....++. +.... ++++.++++++++.....+.+.+.+.+..+.  .++   ++..   .|.. ...++...+++
T Consensus        75 p~~-~~~~v~~-~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~  150 (290)
T 3b1f_A           75 PIK-KTIDFIK-ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYI  150 (290)
T ss_dssp             CHH-HHHHHHH-HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEE
T ss_pred             CHH-HHHHHHH-HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEE
Confidence            953 3455553 45566 8999999999998776678888888752121  122   2221   2221 23577777899


Q ss_pred             EcCCCCCC
Q 015895          317 VVPHIASA  324 (398)
Q Consensus       317 lTPHia~~  324 (398)
                      ++||.++.
T Consensus       151 ~~~~~~~~  158 (290)
T 3b1f_A          151 FSPSCLTK  158 (290)
T ss_dssp             EEECTTCC
T ss_pred             EecCCCCC
Confidence            99997654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.03  E-value=4.9e-10  Score=107.44  Aligned_cols=109  Identities=18%  Similarity=0.202  Sum_probs=86.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|+|||+|.||+.+|+.| ...|++|.+||+++... +.+        ...+     .....+++++++.+|+|++++|
T Consensus         6 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAI-ADV--------IAAG-----AETASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHH--------HHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHH--------HHCC-----CeecCCHHHHHhCCCEEEEECC
Confidence            5899999999999999998 57799999999987542 211        1112     2234678899999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      .+..++.++.  ++....+++|.++|+++.|...+.+.|.+.+...
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  116 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK  116 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            7666777763  3456778999999999999888888899988764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.02  E-value=8.3e-10  Score=105.92  Aligned_cols=109  Identities=17%  Similarity=0.217  Sum_probs=86.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|+.| ...|++|.+||+++... +.        +...+     .....+++++++.+|+|++++|
T Consensus         5 ~~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~--------~~~~g-----~~~~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINL-LKEGVTVYAFDLMEANV-AA--------VVAQG-----AQACENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHH-HHTTCEEEEECSSHHHH-HH--------HHTTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HH--------HHHCC-----CeecCCHHHHHhCCCEEEEECC
Confidence            5899999999999999998 57799999999987542 11        11112     2234678999999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      .+..++.++.  ++....+++|.++|++++|...+.+.|.+.+.+.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~  115 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK  115 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            7777777774  3566778999999999999877788898888763

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.01  E-value=6.1e-10  Score=111.97  Aligned_cols=231  Identities=16%  Similarity=0.171  Sum_probs=127.1

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHHHHhc--------CCCcEEEecCCccccHHHHHHhhccCCceEEEeecccc
Q 015895           29 WINLLIEQDCRVEICTQK--KTILSVEDIIALIG--------DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYN   98 (398)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~eel~~~~~--------~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~G~d   98 (398)
                      ..+.|.+.|++|.+-...  ....+.++..+.=.        .++|.|+.- ..+ +++-++.++. |-.+++..-..-|
T Consensus        47 ~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkV-k~p-~~~e~~~l~~-g~~l~~~lh~~~~  123 (405)
T 4dio_A           47 SVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKV-RRP-SAQEISGYRS-GAVVIAIMDPYGN  123 (405)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEE-ECC-CTTTGGGSCT-TCEEEEECCCTTC
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEe-CCC-ChhHHhhcCC-CcEEEEEeccccC
Confidence            678888889988765543  23456666654211        024655431 111 1233344543 2233433322223


Q ss_pred             ccCchHhhhcCceEEecCCCC----C------chHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccc-cccCCCe
Q 015895           99 NVDVNAANKYGIAVGNTPGVL----T------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQT  167 (398)
Q Consensus        99 ~iD~~~~~~~gI~V~n~p~~~----~------~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g-~~l~gkt  167 (398)
                      .=-++++.++||...----..    +      .+++|.+=.      +-+..+.+.+  ++   ..+....+ ..+.+.+
T Consensus       124 ~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy------~Av~~aa~~l--~~---~~~~l~t~~g~v~~~k  192 (405)
T 4dio_A          124 EEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGY------QAVIDAAYEY--DR---ALPMMMTAAGTVPAAK  192 (405)
T ss_dssp             HHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHH------HHHHHHHHHC--SS---CSSCEEETTEEECCCE
T ss_pred             HHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHH------HHHHHHHHHh--Hh---hhchhhccCCCcCCCE
Confidence            333466778888886522211    1      122222221      1111111111  11   11111111 2478999


Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-------CCCCccccc----------cCCH
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-------GEQPVTWKR----------ASSM  230 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----------~~sl  230 (398)
                      |+|+|+|.||..+|+.+ +++|++|++||+++... +. .+.++...-..       +....++..          ..++
T Consensus       193 V~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~-~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l  269 (405)
T 4dio_A          193 IFVMGAGVAGLQAIATA-RRLGAVVSATDVRPAAK-EQ-VASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV  269 (405)
T ss_dssp             EEEECCSHHHHHHHHHH-HHTTCEEEEECSSTTHH-HH-HHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred             EEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HH-HHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence            99999999999999996 89999999999987542 11 11111100000       000000100          1267


Q ss_pred             HHHhhcCCEEEEcc--CCChhhhhhccHHHHhcCCCCcEEEEcC--CCchh
Q 015895          231 DEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (398)
Q Consensus       231 ~ell~~aDiV~l~~--Plt~~T~~li~~~~~~~mk~gailIN~a--RG~~v  277 (398)
                      ++++++||+|+.++  |.. .+..+++++.++.||+|+++||+|  +|+.+
T Consensus       270 ~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          270 AEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             HHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             HHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence            89999999998774  543 467889999999999999999998  66654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.00  E-value=1.9e-09  Score=111.03  Aligned_cols=118  Identities=15%  Similarity=0.163  Sum_probs=90.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CC
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---AD  238 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aD  238 (398)
                      ....++|||||+|.||+.+|++| ...|.+|.+||+++... +.+.+.       .+  ..+.....+++|+++.   ||
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~L-a~~G~~V~v~~r~~~~~-~~l~~~-------~~--~~gi~~~~s~~e~v~~l~~aD   80 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNI-ESRGYTVSIFNRSREKT-EEVIAE-------NP--GKKLVPYYTVKEFVESLETPR   80 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHH-HTTTCCEEEECSSHHHH-HHHHHH-------ST--TSCEEECSSHHHHHHTBCSSC
T ss_pred             ccCCCeEEEEccHHHHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHHhh-------CC--CCCeEEeCCHHHHHhCCCCCC
Confidence            35667899999999999999998 57899999999987643 221111       00  0123334688998887   99


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +|++++|.+..++.++ ++....+++|.++||++.|...+...+.+.+.+..+
T Consensus        81 vVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~  132 (480)
T 2zyd_A           81 RILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF  132 (480)
T ss_dssp             EEEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence            9999999877888888 467788999999999999998888889888877544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.99  E-value=9.8e-10  Score=105.17  Aligned_cols=108  Identities=22%  Similarity=0.290  Sum_probs=82.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|+.| ...|++|.+||+++... +.        +...+     .....+++++++.||+|++++|
T Consensus         1 m~i~iiG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~--------~~~~g-----~~~~~~~~~~~~~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNL-MKHGYPLIIYDVFPDAC-KE--------FQDAG-----EQVVSSPADVAEKADRIITMLP   65 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHTTCCEEEECSSTHHH-HH--------HHTTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CeEEEEeccHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHcC-----CeecCCHHHHHhcCCEEEEeCC
Confidence            4799999999999999998 57899999999987542 21        11112     2234678899999999999999


Q ss_pred             CChhhhhhccH--HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       246 lt~~T~~li~~--~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      .+..++.++..  ..+..+++|.++|+++...+-+.+.+.+.+.+
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            77777776643  24567899999999888887777777777764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.98  E-value=9.5e-10  Score=108.56  Aligned_cols=137  Identities=13%  Similarity=0.083  Sum_probs=89.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc----CCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----ADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~----aDiV~  241 (398)
                      ++|||||+|.||+++|+.| +..|++|++||+++.....         ....|.     ....++++++++    ||+|+
T Consensus         9 ~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~~---------a~~~G~-----~~~~~~~e~~~~a~~~aDlVi   73 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDL-HAANHSVFGYNRSRSGAKS---------AVDEGF-----DVSADLEATLQRAAAEDALIV   73 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHHHH---------HHHTTC-----CEESCHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---------HHHcCC-----eeeCCHHHHHHhcccCCCEEE
Confidence            5799999999999999998 6889999999998754221         111222     223578887764    79999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC-ccEEEeccCCCC---CC-CCCCCCCCCceE
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDE---PY-MKPGLSEMKNAI  316 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~-i~gAalDV~~~E---P~-~~~~L~~~~nvi  316 (398)
                      +|+|. ..+..++.  .+..+++|++++|++.....-.+++.+.+...+ +.+.  =++..|   |. ....|+...+++
T Consensus        74 lavP~-~~~~~vl~--~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~H--PmaG~e~sG~~aa~~~Lf~g~~~i  148 (341)
T 3ktd_A           74 LAVPM-TAIDSLLD--AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGSH--PMAGTANSGWSASMDGLFKRAVWV  148 (341)
T ss_dssp             ECSCH-HHHHHHHH--HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECEE--ECCSCC-CCGGGCCSSTTTTCEEE
T ss_pred             EeCCH-HHHHHHHH--HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecCC--ccccccccchhhhhhHHhcCCeEE
Confidence            99994 46677762  344469999999998765433344444332111 1111  123333   11 123588877899


Q ss_pred             EcCCCC
Q 015895          317 VVPHIA  322 (398)
Q Consensus       317 lTPHia  322 (398)
                      +||+-.
T Consensus       149 ltp~~~  154 (341)
T 3ktd_A          149 VTFDQL  154 (341)
T ss_dssp             ECCGGG
T ss_pred             EEeCCC
Confidence            999743

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.96  E-value=8.3e-10  Score=105.52  Aligned_cols=108  Identities=17%  Similarity=0.134  Sum_probs=83.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|+.| ...|++|.+|| ++... +.        +...+     .....+++++++++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~-~~~~~-~~--------~~~~g-----~~~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINL-ARAGHQLHVTT-IGPVA-DE--------LLSLG-----AVNVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHH-HHTTCEEEECC-SSCCC-HH--------HHTTT-----CBCCSSHHHHHHTCSEEEECCS
T ss_pred             CEEEEEccCHHHHHHHHHH-HhCCCEEEEEc-CHHHH-HH--------HHHcC-----CcccCCHHHHHhcCCEEEEECC
Confidence            5899999999999999998 57899999999 65432 11        11112     2234678999999999999999


Q ss_pred             CChhhhhhccH--HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       246 lt~~T~~li~~--~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      ...++..++..  +....+++|.++|++++|...+.+.+.+.+.+.
T Consensus        68 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  113 (295)
T 1yb4_A           68 DTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM  113 (295)
T ss_dssp             SHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            76666666642  445678999999999999888888999988863

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.95  E-value=7.2e-09  Score=98.35  Aligned_cols=139  Identities=14%  Similarity=0.096  Sum_probs=92.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|+|||+|.||+.+|+.| ...|++|++||+++... +..        ...+...   ....+++++ ++||+|++++|
T Consensus         1 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~--------~~~g~~~---~~~~~~~~~-~~~D~vi~av~   66 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTC-EKA--------VERQLVD---EAGQDLSLL-QTAKIIFLCTP   66 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHH--------HHTTSCS---EEESCGGGG-TTCSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHH--------HhCCCCc---cccCCHHHh-CCCCEEEEECC
Confidence            4799999999999999998 57899999999987542 211        1112110   123567888 99999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCC---CCC-CCCCCCCCceEEcCCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PYM-KPGLSEMKNAIVVPHI  321 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~E---P~~-~~~L~~~~nvilTPHi  321 (398)
                      . ..+..++ ++....++++.++|+++.......+.+.+.+.  ++-+. --++..+   |.. ...++..+.++++|+-
T Consensus        67 ~-~~~~~~~-~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~  141 (279)
T 2f1k_A           67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTE  141 (279)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECT
T ss_pred             H-HHHHHHH-HHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCC
Confidence            4 4556665 35567789999999998877666666666554  22222 1233212   211 1245666678999975


Q ss_pred             CC
Q 015895          322 AS  323 (398)
Q Consensus       322 a~  323 (398)
                      +.
T Consensus       142 ~~  143 (279)
T 2f1k_A          142 YT  143 (279)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.93  E-value=2e-09  Score=102.39  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=82.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|+.| .. |++|.+||+++... +.+.        ..+     ..... ++++++.+|+|++++|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l-~~-g~~V~~~~~~~~~~-~~~~--------~~g-----~~~~~-~~~~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHL-AR-RFPTLVWNRTFEKA-LRHQ--------EEF-----GSEAV-PLERVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HT-TSCEEEECSSTHHH-HHHH--------HHH-----CCEEC-CGGGGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-hC-CCeEEEEeCCHHHH-HHHH--------HCC-----CcccC-HHHHHhCCCEEEEeCC
Confidence            4799999999999999998 46 99999999987542 1111        111     11122 6677889999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      ....+..++ ++....+++|.++|+++.+...+.+.+.+.+.+.
T Consensus        65 ~~~~~~~v~-~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  107 (289)
T 2cvz_A           65 TTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREK  107 (289)
T ss_dssp             SHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            765577766 5566778999999999999888888999988864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.92  E-value=2.8e-09  Score=103.17  Aligned_cols=109  Identities=15%  Similarity=0.167  Sum_probs=84.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|+.| ...|++|.+||++.... +.+        ...+     .....++++++++||+|++++|
T Consensus        31 ~~I~iIG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~~--------~~~g-----~~~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNL-LKMGHTVTVWNRTAEKC-DLF--------IQEG-----ARLGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSSGGGG-HHH--------HHTT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHH--------HHcC-----CEEcCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999998 57899999999987542 111        1112     2234578899999999999999


Q ss_pred             CChhhhhhccH--HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       246 lt~~T~~li~~--~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      ....++.++..  ..+..++++.++|+++++.....+.+.+.+...
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  141 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSR  141 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            76667666643  235678999999999998887788888888653

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.92  E-value=5.1e-09  Score=108.32  Aligned_cols=115  Identities=16%  Similarity=0.209  Sum_probs=88.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l  242 (398)
                      ++|||||+|.||+.+|++| ...|.+|.+||+++.... .+.+.      ...  ..+.....+++++++.   ||+|++
T Consensus        11 ~~IgvIGlG~MG~~lA~~L-a~~G~~V~v~dr~~~~~~-~l~~~------~~~--~~gi~~~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNA-ADHGFTVCAYNRTQSKVD-HFLAN------EAK--GKSIIGATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSSHHHH-HHHHT------TTT--TSSEECCSSHHHHHHTSCSSCEEEE
T ss_pred             CCEEEEeeHHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHHcc------ccc--CCCeEEeCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999998 467999999999876532 21110      000  0123334688998877   999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      ++|....++.++ ++....+++|.++|+++.+...+...+.+.+.+..+
T Consensus        81 ~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~  128 (497)
T 2p4q_A           81 LVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGI  128 (497)
T ss_dssp             CCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             EcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCC
Confidence            999877888888 567788999999999999998888889888876433

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.88  E-value=8.3e-09  Score=106.11  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=88.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l  242 (398)
                      ++|||||+|.||+.+|+.| ...|.+|.+||+++... +.+.+.       .+.  .+.....+++++++.   +|+|++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L-~~~G~~V~v~dr~~~~~-~~l~~~-------~~~--~gi~~~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNV-ESRGYTVAIYNRTTSKT-EEVFKE-------HQD--KNLVFTKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHHHH-------TTT--SCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             CcEEEEeeHHHHHHHHHHH-HhCCCEEEEEcCCHHHH-HHHHHh-------CcC--CCeEEeCCHHHHHhhccCCCEEEE
Confidence            5799999999999999998 46799999999987542 221111       000  122334688998876   999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++|....+..++ ++....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        75 avp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           75 MVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             CCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             EccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            999877788777 4566789999999999999888888899888765443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.86  E-value=7.9e-09  Score=106.45  Aligned_cols=116  Identities=15%  Similarity=0.242  Sum_probs=87.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~---~aDiV~l  242 (398)
                      ++|||||+|.||+.+|+.| ...|.+|.+||+++... +.+.+.     ...+   .+.....+++++++   .+|+|++
T Consensus         3 m~IgvIG~G~mG~~lA~~L-a~~G~~V~v~dr~~~~~-~~l~~~-----~~~g---~gi~~~~~~~e~v~~l~~aDvVil   72 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKV-DDFLAN-----EAKG---TKVLGAHSLEEMVSKLKKPRRIIL   72 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHH-HHHHHT-----TTTT---SSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CeEEEEChHHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHhc-----cccC---CCeEEeCCHHHHHhhccCCCEEEE
Confidence            5799999999999999998 47899999999987542 221110     0000   12223467888874   8999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++|....+..++. +....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        73 aVp~~~~v~~vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~  121 (482)
T 2pgd_A           73 LVKAGQAVDNFIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (482)
T ss_dssp             CSCTTHHHHHHHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             eCCChHHHHHHHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            9998767888774 566789999999999999888888888888764443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.85  E-value=1.3e-08  Score=104.67  Aligned_cols=126  Identities=17%  Similarity=0.201  Sum_probs=90.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDiV~l  242 (398)
                      ++|||||+|.||+.+|+.| ...|.+|.+||+++... +.+.+.++.  ..   .........+++++++.   +|+|++
T Consensus         2 MkIgVIG~G~mG~~lA~~L-a~~G~~V~v~dr~~~~~-~~l~~~~g~--~~---~~~~i~~~~~~~e~v~~l~~aDvVil   74 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNI-AEKGFKVAVFNRTYSKS-EEFMKANAS--AP---FAGNLKAFETMEAFAASLKKPRKALI   74 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHHHHTTT--ST---TGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEChHHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHhcCC--CC---CCCCeEEECCHHHHHhcccCCCEEEE
Confidence            4799999999999999998 47799999999987542 221111100  00   00112234688898874   999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~  299 (398)
                      ++|....+..++ ++....+++|.++|+++.|...+.+.+.+.+.+..+.....-|.
T Consensus        75 aVp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~  130 (478)
T 1pgj_A           75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS  130 (478)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             ecCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeecc
Confidence            999877788877 45667899999999999998888888988888754443333333

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.85  E-value=1e-08  Score=96.46  Aligned_cols=104  Identities=12%  Similarity=0.089  Sum_probs=77.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh-HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|||||+|.||+.+|+.| ...|++|++||+...+ ..+.+        ...+     ..  .+++++++.||+|++++
T Consensus         1 M~I~iIG~G~mG~~la~~l-~~~g~~V~~~~~~~~~~~~~~~--------~~~g-----~~--~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPSTIERA--------RTVG-----VT--ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHHHHHH--------HHHT-----CE--ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEechHHHHHHHHHH-HHCCCeEEEeCCccCHHHHHHH--------HHCC-----Cc--CCHHHHHhcCCEEEEEC
Confidence            4799999999999999998 4679999999883211 12211        1112     11  46788899999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      |.......+  .+....+++  ++|+++.+...+.+.+.+.+...
T Consensus        65 ~~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           65 TPGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             CGGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             CCHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            976555554  456667776  99999998888888898888763

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.85  E-value=3.8e-09  Score=103.96  Aligned_cols=137  Identities=20%  Similarity=0.188  Sum_probs=92.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..+.+++|||||+|.||+.+|+.| +..|++|++||++.....+.        ....|     .... ++++++++||+|
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L-~~~G~~V~~~~~~~~~~~~~--------a~~~G-----~~~~-~~~e~~~~aDvV   76 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAK--------AEAHG-----LKVA-DVKTAVAAADVV   76 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHH--------HHHTT-----CEEE-CHHHHHHTCSEE
T ss_pred             chhcCCEEEEECchHHHHHHHHHH-HHCcCEEEEEECChHHHHHH--------HHHCC-----CEEc-cHHHHHhcCCEE
Confidence            468899999999999999999998 67899999999986542221        11122     2222 788999999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCC-CC---CCCC---CC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KP---GLSE---MK  313 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~-~~---~L~~---~~  313 (398)
                      ++++|.. ....++.++....+++|+++++++ |  +..  ..+.+.    ...++||+...|.. ..   .++.   -.
T Consensus        77 ilavp~~-~~~~v~~~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           77 MILTPDE-FQGRLYKEEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             EECSCHH-HHHHHHHHHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             EEeCCcH-HHHHHHHHHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            9999953 346666546667899999999874 3  322  122111    13345666666632 11   2333   45


Q ss_pred             ceEEcCCCC
Q 015895          314 NAIVVPHIA  322 (398)
Q Consensus       314 nvilTPHia  322 (398)
                      ++++|||-.
T Consensus       147 ~~ii~~~~~  155 (338)
T 1np3_A          147 PDLIAIYQD  155 (338)
T ss_dssp             CEEEEEEEC
T ss_pred             eEEEEecCC
Confidence            688999854

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.83  E-value=2.7e-08  Score=96.17  Aligned_cols=135  Identities=19%  Similarity=0.187  Sum_probs=87.4

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      -+.|+|||||+|.||+.+|+.+ . .|.+|++||+++.... ...+.+   .+.   ...+.....++++ +++||+|+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~l-a-aG~~V~v~d~~~~~~~-~~~~~l---~~~---~~~~i~~~~~~~~-~~~aDlVie   79 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAI-A-SKHEVVLQDVSEKALE-AAREQI---PEE---LLSKIEFTTTLEK-VKDCDIVME   79 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHHH-HHHHHS---CGG---GGGGEEEESSCTT-GGGCSEEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHH-H-cCCEEEEEECCHHHHH-HHHHHH---HHH---HhCCeEEeCCHHH-HcCCCEEEE
Confidence            4678999999999999999998 5 7999999999886432 111110   000   0001222356666 799999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailI-N~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPH  320 (398)
                      ++|.+.+.+..+-.+ ++.+ ++++++ |+|.-++   ..+.++++. .....++.-|.  |.     ...+-+.++|+
T Consensus        80 avpe~~~vk~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~~-~~r~~G~Hf~~--Pv-----~~~~lveiv~g  145 (293)
T 1zej_A           80 AVFEDLNTKVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLDS-PSRFLGVHWMN--PP-----HVMPLVEIVIS  145 (293)
T ss_dssp             CCCSCHHHHHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSSC-GGGEEEEEECS--ST-----TTCCEEEEEEC
T ss_pred             cCcCCHHHHHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhhc-ccceEeEEecC--cc-----ccCCEEEEECC
Confidence            999988877666444 6667 998885 8877554   344444432 23455666555  33     23466777775

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.81  E-value=1.5e-08  Score=103.93  Aligned_cols=147  Identities=14%  Similarity=0.234  Sum_probs=92.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhh----hh----hhhhhcCCCCccccccCCHHHHhhc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTA----YG----QFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-fG~~V~~~d~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      ++|+|||+|.||..+|..|++. .|++|++||+++... +...+.    +.    ..+...  ...+.....++++.++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~-~~l~~g~~~i~e~~l~~~~~~~--~~~~~~~t~~~~e~~~~   82 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRI-NAWNSPTLPIYEPGLKEVVESC--RGKNLFFSTNIDDAIKE   82 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSCSSCCTTHHHHHHHH--BTTTEEEESCHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHhCCCCCcCCCCHHHHHHHh--hcCCEEEECCHHHHHhc
Confidence            5899999999999999998532 289999999987542 211000    00    000000  00012223578888999


Q ss_pred             CCEEEEccCCChhhhh-----------hc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec---cCC
Q 015895          237 ADVISLHPVLDKTTYH-----------LI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFE  300 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~-----------li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD---V~~  300 (398)
                      ||+|++|+|...+..+           +.  -++....+++|.++|++|+..+-..+.+.+.+.+....  .+|   ++.
T Consensus        83 aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~  160 (467)
T 2q3e_A           83 ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSN  160 (467)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEEC
T ss_pred             CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeC
Confidence            9999999986443322           11  13455678999999999998888888888888875422  233   355


Q ss_pred             CCCCCC-C---CCCCCCceEE
Q 015895          301 DEPYMK-P---GLSEMKNAIV  317 (398)
Q Consensus       301 ~EP~~~-~---~L~~~~nvil  317 (398)
                      +|+... .   .+...+++++
T Consensus       161 Pe~~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          161 PEFLAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEE
T ss_pred             HHHhhcccchhhccCCCEEEE
Confidence            665432 1   2345556654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.79  E-value=1.1e-08  Score=101.89  Aligned_cols=108  Identities=17%  Similarity=0.236  Sum_probs=81.0

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aDiV  240 (398)
                      +|.||||+|+|+|+||+.+|++| ..+|++|+++|+++.. ++.+.+.+       +     .. ..+.++++. .||++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L-~~~GakVvv~D~~~~~-l~~~a~~~-------g-----a~-~v~~~~ll~~~~DIv  234 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA-VSAAVAEE-------G-----AD-AVAPNAIYGVTCDIF  234 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHH-------C-----CE-ECCGGGTTTCCCSEE
T ss_pred             CCCcCEEEEECchHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc-------C-----CE-EEChHHHhccCCcEe
Confidence            69999999999999999999998 7999999999998753 22222221       1     11 134556665 89999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +.|.     +.++|+.+.++.|+ ..++++.+++.+.+++ ..+.|+++.+
T Consensus       235 ip~a-----~~~~I~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          235 APCA-----LGAVLNDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             EECS-----CSCCBSTTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             eccc-----hHHHhCHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            8774     56688888888885 5689999999988755 4566666554

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.28  E-value=5.8e-10  Score=101.94  Aligned_cols=94  Identities=18%  Similarity=0.181  Sum_probs=72.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      +.+++|||||+|+||+.+|++| ...|++|.+|||+.. . +.+        ...     +... .+++++++.||+|++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~-~-~~~--------~~~-----g~~~-~~~~~~~~~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKM-LQCGYSVVFGSRNPQ-V-SSL--------LPR-----GAEV-LCYSEAASRSDVIVL   79 (201)
Confidence            7788999999999999999998 688999999998764 1 111        111     1222 267788899999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v  277 (398)
                      ++|.. .++.++   .+..++++.++||+++|-..
T Consensus        80 av~~~-~~~~v~---~l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           80 AVHRE-HYDFLA---ELADSLKGRVLIDVSNNQKM  110 (201)
Confidence            99964 677766   25567789999999999754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.79  E-value=4.8e-08  Score=99.87  Aligned_cols=142  Identities=17%  Similarity=0.155  Sum_probs=90.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--------ccccccCCHHHHhhcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLREA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell~~a  237 (398)
                      ++|||||+|.||..+|..++ ..|.+|++||+++........+.+. ...+.+...        .......+++ .+++|
T Consensus        55 ~kVaVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~a~~~i~~~l~-~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~a  131 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFG-LAGIETFLVVRNEQRCKQELEVMYA-REKSFKRLNDKRIEKINANLKITSDFH-KLSNC  131 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHH-HHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCeEEEEECcHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHhcceEEeCCHH-HHccC
Confidence            68999999999999999984 6799999999988632111100110 011112110        0111235665 68999


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEE
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIV  317 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvil  317 (398)
                      |+|+.++|-+.+.+.-+-++..+.++++++|++.+.+-  ....+.+.+.. .-...++.-|.  |..     .++-|.+
T Consensus       132 DlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl--~i~~ia~~~~~-p~r~iG~Hffn--Pv~-----~m~LvEI  201 (460)
T 3k6j_A          132 DLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSL--DLNEISSVLRD-PSNLVGIHFFN--PAN-----VIRLVEI  201 (460)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHHTTSSS-GGGEEEEECCS--STT-----TCCEEEE
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCCh--hHHHHHHhccC-CcceEEEEecc--hhh-----hCCEEEE
Confidence            99999999877766555567778899999997544442  33556666543 23567777776  432     2344667


Q ss_pred             cCC
Q 015895          318 VPH  320 (398)
Q Consensus       318 TPH  320 (398)
                      +|+
T Consensus       202 v~g  204 (460)
T 3k6j_A          202 IYG  204 (460)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            775

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.77  E-value=1e-08  Score=96.76  Aligned_cols=104  Identities=13%  Similarity=0.166  Sum_probs=75.3

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      ..++.+++|||||+|.||+.+|+.+ ...|++ |.+||+++... +...+.       .+     .....++++++++||
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l-~~~g~~~v~~~~~~~~~~-~~~~~~-------~g-----~~~~~~~~~~~~~~D   70 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKAL-YRKGFRIVQVYSRTEESA-RELAQK-------VE-----AEYTTDLAEVNPYAK   70 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSHHHH-HHHHHH-------TT-----CEEESCGGGSCSCCS
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHH-HHHHHH-------cC-----CceeCCHHHHhcCCC
Confidence            3456778999999999999999998 466888 89999987542 221111       11     222357888889999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde  279 (398)
                      +|++++|.. ....++ ++....++++.++|+++.|...+.
T Consensus        71 vvi~av~~~-~~~~v~-~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           71 LYIVSLKDS-AFAELL-QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             EEEECCCHH-HHHHHH-HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             EEEEecCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCchHH
Confidence            999999964 445555 345567889999999999876543

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.76  E-value=9.9e-09  Score=104.81  Aligned_cols=102  Identities=20%  Similarity=0.208  Sum_probs=71.6

Q ss_pred             cccCC-CeEEEEecChhHHHHHHHHHhcC------CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 015895          161 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (398)
Q Consensus       161 ~~l~g-ktvGIIGlG~IG~~vA~~la~~f------G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el  233 (398)
                      ..|+| |+|||||+|+||+++|+.| +..      |++|++.++..+...+.        ....|.... .....+++|+
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nL-r~s~~~~g~G~~ViVg~r~~sks~e~--------A~e~G~~v~-d~ta~s~aEA  118 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKIGLRKGSKSFDE--------ARAAGFTEE-SGTLGDIWET  118 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHH--------HHHTTCCTT-TTCEEEHHHH
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHH-HhcccccCCCCEEEEEeCCchhhHHH--------HHHCCCEEe-cCCCCCHHHH
Confidence            56999 9999999999999999998 455      99988665543221111        111232110 0012478999


Q ss_pred             hhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       234 l~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +++||+|++++|..... .++. +.+..||+|++ |-.+.|-
T Consensus       119 a~~ADVVILaVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaGf  157 (525)
T 3fr7_A          119 VSGSDLVLLLISDAAQA-DNYE-KIFSHMKPNSI-LGLSHGF  157 (525)
T ss_dssp             HHHCSEEEECSCHHHHH-HHHH-HHHHHSCTTCE-EEESSSH
T ss_pred             HhcCCEEEECCChHHHH-HHHH-HHHHhcCCCCe-EEEeCCC
Confidence            99999999999975543 5665 78899999998 5666773

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.69  E-value=3.4e-07  Score=90.71  Aligned_cols=229  Identities=16%  Similarity=0.184  Sum_probs=129.0

Q ss_pred             CCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHHhc---------CCCcEEEecCCccccHHHHHHhhccCCceEEE
Q 015895           24 MPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIALIG---------DKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (398)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~eel~~~~~---------~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~   92 (398)
                      +.|+ ..+.|.+.|++|.+-....  ...+.++..+.=.         +++|.|+. ...+...+. . +.+.|...+..
T Consensus        18 ~~P~-~v~~l~~~g~~v~ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~~ad~i~~-vksP~~~~~-~-~~~~g~~~~~y   93 (361)
T 1pjc_A           18 LSPS-SVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVVK-VKEPLPAEY-D-LMQKDQLLFTY   93 (361)
T ss_dssp             CCHH-HHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHHTSSEEEC-SSCCCGGGG-G-GCCTTCEEEEC
T ss_pred             cCHH-HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEECCHHHHhcCCeEEE-ECCCCHHHH-H-hhcCCCEEEEE
Confidence            3443 5788888888887644332  2355555542100         03787653 333332222 1 22223335544


Q ss_pred             eeccccccCchHhhhcCceEEec---CCCC-----CchHHHHHH--HHHHHHhhchHHHHHHHHcCccCCCCCCcccccc
Q 015895           93 MAVGYNNVDVNAANKYGIAVGNT---PGVL-----TETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL  162 (398)
Q Consensus        93 ~g~G~d~iD~~~~~~~gI~V~n~---p~~~-----~~~vAE~~l--~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~  162 (398)
                      ....++.-.++.+.++|+...|.   |.-.     -.++++.+-  +.+++. .++..    ...|+  +..-. .. ..
T Consensus        94 ~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA-~nt~~----~~~g~--G~~l~-~l-~~  164 (361)
T 1pjc_A           94 LHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGA-RFLER----QQGGR--GVLLG-GV-PG  164 (361)
T ss_dssp             CCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHH-HHTSG----GGTSC--CCCTT-CB-TT
T ss_pred             eccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHH-HHHhh----ccCCC--ceecc-CC-CC
Confidence            44555554567778889988864   4321     133444333  333333 22211    01121  01000 01 24


Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      +.++++.|+|.|.+|+.+++.+ +.+|++|+++|+++... +...+.++..      .........++.+.+..+|+|+.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a-~~~Ga~V~v~dr~~~r~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~DvVI~  236 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERL-SYLETLFGSR------VELLYSNSAEIETAVAEADLLIG  236 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHHGGG------SEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhhCce------eEeeeCCHHHHHHHHcCCCEEEE
Confidence            7889999999999999999996 79999999999987542 2111111000      00000011246677789999999


Q ss_pred             ccCCCh-hhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          243 HPVLDK-TTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       243 ~~Plt~-~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +++... .+..++.++.++.|++|.+++|++-
T Consensus       237 ~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          237 AVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            987533 2345668889999999999999974

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.66  E-value=1.8e-07  Score=94.97  Aligned_cols=125  Identities=16%  Similarity=0.240  Sum_probs=83.4

Q ss_pred             ccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh--------hhhhhhcCCCCccccccCC
Q 015895          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       158 ~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~s  229 (398)
                      .++++..-++|+|||+|.||..+|..|+ . |.+|++||+++... +...+..        ...+.. +  ..+.....+
T Consensus        29 ~~~r~~~~mkIaVIGlG~mG~~lA~~La-~-G~~V~~~D~~~~~v-~~l~~g~~~i~e~~l~~ll~~-~--~~~l~~ttd  102 (432)
T 3pid_A           29 QMGRGSEFMKITISGTGYVGLSNGVLIA-Q-NHEVVALDIVQAKV-DMLNQKISPIVDKEIQEYLAE-K--PLNFRATTD  102 (432)
T ss_dssp             ------CCCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESC
T ss_pred             ccccccCCCEEEEECcCHHHHHHHHHHH-c-CCeEEEEecCHHHh-hHHhccCCccccccHHHHHhh-c--cCCeEEEcC
Confidence            3567788889999999999999999985 5 99999999987642 2211100        000000 0  011223467


Q ss_pred             HHHHhhcCCEEEEccCCChh-------hhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          230 MDEVLREADVISLHPVLDKT-------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       230 l~ell~~aDiV~l~~Plt~~-------T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      +++.++.||+|++++|...+       +..+.  -+.... +++|+++|+.|+..+-..+.+.+.+.+.
T Consensus       103 ~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~  170 (432)
T 3pid_A          103 KHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID  170 (432)
T ss_dssp             HHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC
T ss_pred             HHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc
Confidence            88999999999999996522       11222  134555 9999999999998888888898888764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.66  E-value=7.7e-08  Score=82.41  Aligned_cols=93  Identities=13%  Similarity=0.250  Sum_probs=69.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      |++++|||.|.||+.+++.| ..+|++|.++|++.... +.+.+.+       +   .......+++++++++|+|+.++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l-~~~g~~v~v~~r~~~~~-~~~a~~~-------~---~~~~~~~~~~~~~~~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYF-SYPQYKVTVAGRNIDHV-RAFAEKY-------E---YEYVLINDIDSLIKNNDVIITAT   88 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGC-CTTTCEEEEEESCHHHH-HHHHHHH-------T---CEEEECSCHHHHHHTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCHHHH-HHHHHHh-------C---CceEeecCHHHHhcCCCEEEEeC
Confidence            88999999999999999997 57899999999987542 2222221       1   11223467899999999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      |.+   ..++..   +.+++|.+++|++...
T Consensus        89 ~~~---~~~~~~---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           89 SSK---TPIVEE---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             CCS---SCSBCG---GGCCTTCEEEECCSSC
T ss_pred             CCC---CcEeeH---HHcCCCCEEEEccCCc
Confidence            965   334443   5578899999998753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.64  E-value=5.9e-08  Score=89.17  Aligned_cols=95  Identities=17%  Similarity=0.220  Sum_probs=69.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+++|+|||+|.||+.+|+.+ ...|.+|.++|++.... +.        +...+     ... .+++++++++|+|+++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l-~~~g~~V~~~~r~~~~~-~~--------~~~~g-----~~~-~~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRL-VGSGFKVVVGSRNPKRT-AR--------LFPSA-----AQV-TFQEEAVSSPEVIFVA   90 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHH-HHTTCCEEEEESSHHHH-HH--------HSBTT-----SEE-EEHHHHTTSCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHcC-----Cce-ecHHHHHhCCCEEEEC
Confidence            457899999999999999998 57899999999986542 21        11111     112 2688889999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd  278 (398)
                      +|. .....++.   ++.+.++.++|++++|...+
T Consensus        91 v~~-~~~~~v~~---l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A           91 VFR-EHYSSLCS---LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             SCG-GGSGGGGG---GHHHHTTCEEEECCCCCHHH
T ss_pred             CCh-HHHHHHHH---HHHhcCCCEEEEeCCCcccc
Confidence            994 45566663   44334799999999997654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.63  E-value=1.1e-06  Score=84.62  Aligned_cols=143  Identities=15%  Similarity=0.139  Sum_probs=85.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC-------------ccccccCC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP-------------VTWKRASS  229 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~-------------~~~~~~~s  229 (398)
                      ++|+|||+|.||..+|..++ ..|++|++||++.......  ... .+. .+...+...             .......+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~~~~~i~~~l~-~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~   93 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTD   93 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHHH-HHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHH-HHHHcCCCCccccchhhHHHHHhceEEecC
Confidence            68999999999999999985 6799999999987542210  000 000 001111100             01122357


Q ss_pred             HHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCC
Q 015895          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL  309 (398)
Q Consensus       230 l~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L  309 (398)
                      +++.++.||+|++++|...+...-+-++....++++++++..+.|-.  ...+.+.+... -.-.+...+.  |.     
T Consensus        94 ~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~--~~~l~~~~~~~-~~~~g~h~~~--P~-----  163 (302)
T 1f0y_A           94 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ--ITSIANATTRQ-DRFAGLHFFN--PV-----  163 (302)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC--HHHHHTTSSCG-GGEEEEEECS--ST-----
T ss_pred             HHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC--HHHHHHhcCCc-ccEEEEecCC--Cc-----
Confidence            88889999999999997655444444555567899999986555533  34555555422 1234555443  32     


Q ss_pred             CCCCceEEcCC
Q 015895          310 SEMKNAIVVPH  320 (398)
Q Consensus       310 ~~~~nvilTPH  320 (398)
                      ...+.+.+.++
T Consensus       164 ~~~~~~~i~~g  174 (302)
T 1f0y_A          164 PVMKLVEVIKT  174 (302)
T ss_dssp             TTCCEEEEECC
T ss_pred             ccCceEEEeCC
Confidence            12345566664

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.61  E-value=6.6e-08  Score=88.48  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=61.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .++.+++|+|||+|.||+.+|+.| ...|.+|.+||+++.                                .+++||+|
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l-~~~g~~V~~~~~~~~--------------------------------~~~~aD~v   61 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNF-EIAGHEVTYYGSKDQ--------------------------------ATTLGEIV   61 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHH-HHTTCEEEEECTTCC--------------------------------CSSCCSEE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHH--------------------------------HhccCCEE
Confidence            468899999999999999999998 578999999987431                                35789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      ++++| +..++.++. +....++ ++++|++++|--
T Consensus        62 i~av~-~~~~~~v~~-~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           62 IMAVP-YPALAALAK-QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EECSC-HHHHHHHHH-HTHHHHT-TSEEEECCCCBC
T ss_pred             EEcCC-cHHHHHHHH-HHHHhcC-CCEEEEECCCCC
Confidence            99999 667777664 3444577 999999999754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.61  E-value=8.3e-08  Score=91.63  Aligned_cols=93  Identities=18%  Similarity=0.301  Sum_probs=70.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|||||+ |.||+.+|+.| ...|.+|++||+++... +..        ...+.     . ..++.++++.||+|++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l-~~~g~~V~~~~r~~~~~-~~~--------~~~g~-----~-~~~~~~~~~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKI-HDSAHHLAAIEIAPEGR-DRL--------QGMGI-----P-LTDGDGWIDEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHSSSEEEEECCSHHHH-HHH--------HHTTC-----C-CCCSSGGGGTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHH--------HhcCC-----C-cCCHHHHhcCCCEEEEcC
Confidence            58999999 99999999998 57899999999987542 211        11121     1 135667889999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      |.. .+..++ ++....++++.++|+++.|..
T Consensus        76 ~~~-~~~~v~-~~l~~~l~~~~ivv~~s~~~~  105 (286)
T 3c24_A           76 PDN-IIEKVA-EDIVPRVRPGTIVLILDAAAP  105 (286)
T ss_dssp             CHH-HHHHHH-HHHGGGSCTTCEEEESCSHHH
T ss_pred             Cch-HHHHHH-HHHHHhCCCCCEEEECCCCch
Confidence            953 356655 455667899999999998863

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.59  E-value=2.7e-07  Score=86.52  Aligned_cols=102  Identities=16%  Similarity=0.228  Sum_probs=73.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|+.+ ...|.+|.+||+++... +.+.+.+       +     .....+++++++++|+|++++|
T Consensus         4 m~i~iiG~G~mG~~~a~~l-~~~g~~v~~~~~~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL-------A-----LPYAMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH-------T-----CCBCSSHHHHHHTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHHc-------C-----CEeeCCHHHHHhcCCEEEEEeC
Confidence            5899999999999999998 57789999999987542 2211111       2     1224578899999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                       .....     +.+..+++|.++|+++.|--.  +.+.+.+..+
T Consensus        70 -~~~~~-----~v~~~l~~~~~vv~~~~~~~~--~~l~~~~~~~  105 (259)
T 2ahr_A           70 -PQLFE-----TVLKPLHFKQPIISMAAGISL--QRLATFVGQD  105 (259)
T ss_dssp             -GGGHH-----HHHTTSCCCSCEEECCTTCCH--HHHHHHHCTT
T ss_pred             -cHhHH-----HHHHHhccCCEEEEeCCCCCH--HHHHHhcCCC
Confidence             44443     344557789999999776443  4566666644

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.57  E-value=1.6e-07  Score=87.86  Aligned_cols=105  Identities=23%  Similarity=0.311  Sum_probs=74.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc----EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|||||+|+||+.+|+.| ...|.    +|.+||+++... +.+.+.       .+     .....+..+++++||+|+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l-~~~g~~~~~~V~~~~r~~~~~-~~~~~~-------~g-----~~~~~~~~e~~~~aDvVi   68 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGM-INKNIVSSNQIICSDLNTANL-KNASEK-------YG-----LTTTTDNNEVAKNADILI   68 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTSSCGGGEEEECSCHHHH-HHHHHH-------HC-----CEECSCHHHHHHHCSEEE
T ss_pred             CeEEEECccHHHHHHHHHH-HhCCCCCCCeEEEEeCCHHHH-HHHHHH-------hC-----CEEeCChHHHHHhCCEEE
Confidence            5899999999999999998 57787    999999987542 221111       12     223468899999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +++|. .....++ ++....++++.++|.+.-|--  .+.|.+.+..
T Consensus        69 lav~~-~~~~~v~-~~l~~~l~~~~~vvs~~~gi~--~~~l~~~~~~  111 (247)
T 3gt0_A           69 LSIKP-DLYASII-NEIKEIIKNDAIIVTIAAGKS--IESTENAFNK  111 (247)
T ss_dssp             ECSCT-TTHHHHC----CCSSCTTCEEEECSCCSC--HHHHHHHHCS
T ss_pred             EEeCH-HHHHHHH-HHHHhhcCCCCEEEEecCCCC--HHHHHHHhCC
Confidence            99974 4455555 445566889999997766643  4566666654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.55  E-value=2.2e-07  Score=90.54  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=76.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChh-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      ...++|||||+|.||+.+|+.| ...|    .+|.+||++.. ...+.+        ...|     .....+..++++.|
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L-~~~G~~~~~~V~v~~r~~~~~~~~~l--------~~~G-----~~~~~~~~e~~~~a   85 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGF-TAAGVLAAHKIMASSPDMDLATVSAL--------RKMG-----VKLTPHNKETVQHS   85 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHH-HHTTSSCGGGEEEECSCTTSHHHHHH--------HHHT-----CEEESCHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHH-HHCCCCCcceEEEECCCccHHHHHHH--------HHcC-----CEEeCChHHHhccC
Confidence            3456899999999999999998 4667    78999999874 222221        1112     22235788899999


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |+|++++| ......++ .+....++++.++|+++-|--  .+.+.+.+..
T Consensus        86 DvVilav~-~~~~~~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           86 DVLFLAVK-PHIIPFIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             SEEEECSC-GGGHHHHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             CEEEEEeC-HHHHHHHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            99999999 45666665 345567889999999987643  3456666654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.54  E-value=3.8e-07  Score=88.58  Aligned_cols=97  Identities=19%  Similarity=0.207  Sum_probs=71.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ..+++|||||+|.||+.+++.+++.+|. +|.+||+++... +.+.+.       .+.   ......+++++++.||+|+
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~-~~l~~~-------~~~---~~~~~~~~~e~v~~aDiVi  201 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENA-EKFADT-------VQG---EVRVCSSVQEAVAGADVII  201 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHH-HHHHHH-------SSS---CCEECSSHHHHHTTCSEEE
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHH-------hhC---CeEEeCCHHHHHhcCCEEE
Confidence            4567899999999999999988555676 899999987542 222111       110   1223468999999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      +++|.   +..++..   ..+++|.++++++....
T Consensus       202 ~atp~---~~~v~~~---~~l~~g~~vi~~g~~~p  230 (312)
T 2i99_A          202 TVTLA---TEPILFG---EWVKPGAHINAVGASRP  230 (312)
T ss_dssp             ECCCC---SSCCBCG---GGSCTTCEEEECCCCST
T ss_pred             EEeCC---CCcccCH---HHcCCCcEEEeCCCCCC
Confidence            99994   3556654   57899999999987655

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.52  E-value=1.9e-06  Score=82.43  Aligned_cols=170  Identities=18%  Similarity=0.270  Sum_probs=109.6

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccH-HHHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGE-TLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~-~~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++.+....++ ..+++|+.+.+.     +..|++++..+  ..+++ .+++...-.  |=+-    |+-.+.+-.
T Consensus        58 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDVD----g~~~~N~g~  130 (285)
T 3p2o_A           58 CEECGIKSLVYHLNE-NITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDVD----GFHPINVGY  130 (285)
T ss_dssp             HHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--GCTT----CCSHHHHHH
T ss_pred             HHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcc--cccc----cCCHhhhhh
Confidence            345677776655443 357888887662     24899999865  34554 344444221  2221    221122221


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (398)
                      ... |     .+++....++.-++-++    ++                     .+.+++||++.|||.|. +|+.+|+.
T Consensus       131 l~~-g-----~~~g~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVvGrs~iVG~p~A~l  179 (285)
T 3p2o_A          131 LNL-G-----LESGFLPCTPLGVMKLL----KA---------------------YEIDLEGKDAVIIGASNIVGRPMATM  179 (285)
T ss_dssp             HHT-T-----CCSSCCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             hhc-C-----CCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchHHHHHHHH
Confidence            111 1     23324455665554333    21                     23579999999999988 69999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ...|++|.+.+++.                            .++++.+++||+|+.+++.    .++|..+.   +|
T Consensus       180 L-~~~gAtVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---vk  223 (285)
T 3p2o_A          180 L-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM---VK  223 (285)
T ss_dssp             H-HHTTCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSSC----TTCBCGGG---SC
T ss_pred             H-HHCCCeEEEEeCCc----------------------------hhHHHHhhcCCEEEECCCC----CCcCCHHH---cC
Confidence            7 68999999887532                            3688999999999999984    45566544   59


Q ss_pred             CCcEEEEcCCCch
Q 015895          264 KEAILVNCSRGPV  276 (398)
Q Consensus       264 ~gailIN~aRG~~  276 (398)
                      +|+++||++.-.+
T Consensus       224 ~GavVIDVgi~~~  236 (285)
T 3p2o_A          224 EGVIVVDVGINRL  236 (285)
T ss_dssp             TTEEEEECCCEEC
T ss_pred             CCeEEEEeccCcc
Confidence            9999999997653

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.52  E-value=3.9e-07  Score=87.14  Aligned_cols=106  Identities=10%  Similarity=0.071  Sum_probs=76.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      .++|||||+|+||+.+|+.+ ...|.   +|.+||+++... +.+.+.            .+.....+..+++++||+|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l-~~~g~~~~~V~v~dr~~~~~-~~l~~~------------~gi~~~~~~~~~~~~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGL-IANGYDPNRICVTNRSLDKL-DFFKEK------------CGVHTTQDNRQGALNADVVV   68 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHH-HHTTCCGGGEEEECSSSHHH-HHHHHT------------TCCEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEEcccHHHHHHHHHH-HHCCCCCCeEEEEeCCHHHH-HHHHHH------------cCCEEeCChHHHHhcCCeEE
Confidence            46899999999999999998 46677   899999987642 221111            12233467889999999999


Q ss_pred             EccCCChhhhhhccHHHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          242 LHPVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~-mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +++|. .....++ ++.-.. ++++.++|+++-|--  .+.|.+.+..
T Consensus        69 lav~p-~~~~~vl-~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~  112 (280)
T 3tri_A           69 LAVKP-HQIKMVC-EELKDILSETKILVISLAVGVT--TPLIEKWLGK  112 (280)
T ss_dssp             ECSCG-GGHHHHH-HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHTC
T ss_pred             EEeCH-HHHHHHH-HHHHhhccCCCeEEEEecCCCC--HHHHHHHcCC
Confidence            99984 4445555 334344 688889998877643  4677777765

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.52  E-value=2.7e-06  Score=81.38  Aligned_cols=170  Identities=19%  Similarity=0.233  Sum_probs=108.5

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc----C-CCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCch
Q 015895           32 LLIEQDCRVEICTQKKTILSVEDIIALIG----D-KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVN  103 (398)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~eel~~~~~----~-~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~  103 (398)
                      ..++.|++.+....++ ..+++|+.+.+.    + ..|++++..+  ..+++. +++...-.  |=+-    |+-.+++-
T Consensus        59 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDVD----G~~~~N~g  131 (286)
T 4a5o_A           59 DCEEVGFLSQAYDLPA-ETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPD--KDVD----GFHPYNIG  131 (286)
T ss_dssp             HHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGG--GCTT----CCSHHHHH
T ss_pred             HHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcc--cccc----cCChhhhH
Confidence            3455688776655443 358888887653    1 4789999865  345543 44443211  2210    11112221


Q ss_pred             HhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHH
Q 015895          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (398)
Q Consensus       104 ~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~  182 (398)
                      .... |     .++ ....++.-++-++    ++                     .+.+++||++.|||.|. +|+.+|.
T Consensus       132 ~l~~-g-----~~~-~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVvGrs~iVG~plA~  179 (286)
T 4a5o_A          132 RLAQ-R-----MPL-LRPCTPKGIMTLL----AS---------------------TGADLYGMDAVVVGASNIVGRPMAL  179 (286)
T ss_dssp             HHHT-T-----CCS-SCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECTTSTTHHHHHH
T ss_pred             HHhc-C-----CCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchhHHHHHH
Confidence            1111 1     232 3445555554432    21                     23579999999999987 7999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ...|++|...+++.                            .++++.+++||+|+.++|.    .++|..+.   +
T Consensus       180 lL-~~~gAtVtv~hs~T----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---v  223 (286)
T 4a5o_A          180 EL-LLGGCTVTVTHRFT----------------------------RDLADHVSRADLVVVAAGK----PGLVKGEW---I  223 (286)
T ss_dssp             HH-HHTTCEEEEECTTC----------------------------SCHHHHHHTCSEEEECCCC----TTCBCGGG---S
T ss_pred             HH-HHCCCeEEEEeCCC----------------------------cCHHHHhccCCEEEECCCC----CCCCCHHH---c
Confidence            97 68999999876421                            3688999999999999984    45666644   4


Q ss_pred             CCCcEEEEcCCCch
Q 015895          263 KKEAILVNCSRGPV  276 (398)
Q Consensus       263 k~gailIN~aRG~~  276 (398)
                      |+|+++||++.-.+
T Consensus       224 k~GavVIDvgi~~~  237 (286)
T 4a5o_A          224 KEGAIVIDVGINRQ  237 (286)
T ss_dssp             CTTCEEEECCSCSS
T ss_pred             CCCeEEEEeccccc
Confidence            99999999987653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.49  E-value=9.6e-07  Score=90.16  Aligned_cols=119  Identities=15%  Similarity=0.164  Sum_probs=79.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--------CccccccCCHHHHhhcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~sl~ell~~a  237 (398)
                      ++|+|||+|.||..+|..|+ ..|.+|++||+++... +.+.+..... ...+..        ........+++++++.|
T Consensus         3 mkI~VIG~G~vG~~lA~~La-~~G~~V~~~D~~~~~v-~~l~~g~~~i-~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFA-ELGANVRCIDTDRNKI-EQLNSGTIPI-YEPGLEKMIARNVKAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHHTCSCC-CSTTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHH-hcCCEEEEEECCHHHH-HHHHcCCCcc-cCCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence            68999999999999999984 6799999999987542 2211100000 000000        00122235789999999


Q ss_pred             CEEEEccCCCh---------hhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          238 DVISLHPVLDK---------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       238 DiV~l~~Plt~---------~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |+|++++|...         ..+..+ ++....+++|.++|+.|.-.+-..+.+.+.+.+
T Consensus        80 DvViiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99999999653         333433 456677999999999998666556666666654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.48  E-value=1.9e-06  Score=88.77  Aligned_cols=141  Identities=21%  Similarity=0.292  Sum_probs=88.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCCCc--------cccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQPV--------TWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~sl~ell  234 (398)
                      ++|||||+|.||..+|..++ ..|.+|++||++...... ..+.....+.   ..+....        ......+++ .+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~l~~-~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAA-SHGHQVLLYDISAEALTR-AIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-AL   82 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHH-HHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GG
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEECCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hh
Confidence            58999999999999999984 679999999998765321 1110000011   1111100        011234565 57


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCC
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gail-IN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~  313 (398)
                      ++||+|+.++|-+.+.+.-+-++..+.++++++| .|+|.-++   ..+.+.+.. .-...++..|.+-|.       ++
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~~~~~-p~~~ig~hf~~Pa~v-------~~  151 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAAEIKN-PERVAGLHFFNPAPV-------MK  151 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTTTSSS-GGGEEEEEECSSTTT-------CC
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHHHccC-ccceEEeeecChhhh-------CC
Confidence            9999999999987666555556677789999999 46765433   455555543 235567776653332       24


Q ss_pred             ceEEcCC
Q 015895          314 NAIVVPH  320 (398)
Q Consensus       314 nvilTPH  320 (398)
                      -+.+.|+
T Consensus       152 Lvevv~g  158 (483)
T 3mog_A          152 LVEVVSG  158 (483)
T ss_dssp             EEEEEEC
T ss_pred             eEEEecC
Confidence            4566664

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.48  E-value=5e-07  Score=91.67  Aligned_cols=116  Identities=11%  Similarity=0.126  Sum_probs=79.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh--------hhhhhh---cCCCCccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKA---NGEQPVTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~sl~ell  234 (398)
                      ++|+|||+|.||..+|..|+ ..|.+|++||+++... +...+..        ...+..   .+    ......++++.+
T Consensus         1 mkI~VIG~G~vG~~~A~~la-~~G~~V~~~d~~~~~~-~~l~~~~~~i~e~~l~~~~~~~~~~g----~l~~t~~~~~~~   74 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTKI-DLINQGKSPIVEPGLEALLQQGRQTG----RLSGTTDFKKAV   74 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHHHTT----CEEEESCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHhCCCCCcCCCCHHHHHHhhcccC----ceEEeCCHHHHh
Confidence            47999999999999999984 6799999999987542 2211100        000000   00    022345788889


Q ss_pred             hcCCEEEEccCCChh---------hhhhccHHHHhcCCC---CcEEEEcCCCchhc-HHHHHHHHhc
Q 015895          235 READVISLHPVLDKT---------TYHLINKERLATMKK---EAILVNCSRGPVID-EVALVEHLKQ  288 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~---------T~~li~~~~~~~mk~---gailIN~aRG~~vd-e~aL~~aL~~  288 (398)
                      +.||+|++|+|...+         .+..+ ++....+++   +.++|++|...+-. ++.+.+.+.+
T Consensus        75 ~~aDvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           75 LDSDVSFICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             HTCSEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             ccCCEEEEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999999999996554         44443 445556888   99999999877665 5667777765

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.48  E-value=3.4e-06  Score=80.58  Aligned_cols=170  Identities=18%  Similarity=0.211  Sum_probs=110.6

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++.+....++ ..+++|+++.+.     ++.|+|++..+  ..+++. ++++..-.  |=|-    |+..+.+-.
T Consensus        57 ~~~~Gi~~~~~~lp~-~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~--KDVD----G~~p~n~g~  129 (281)
T 2c2x_A           57 CAKVGITSIRRDLPA-DISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPA--KDAD----GLHPTNLGR  129 (281)
T ss_dssp             HHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--GBTT----SCCHHHHHH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--CCcc----CCChhhHHH
Confidence            344587776655444 368888887763     24799999864  345443 34443222  2211    222222222


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh-HHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~I-G~~vA~~  183 (398)
                      ... |     .+ .....+++-++-++    ++                     .+.+++||++.|||.|.| |+.+|+.
T Consensus       130 l~~-g-----~~-~~~PcTp~gi~~ll----~~---------------------~~i~l~gk~vvVvG~s~iVG~p~A~l  177 (281)
T 2c2x_A          130 LVL-G-----TP-APLPCTPRGIVHLL----RR---------------------YDISIAGAHVVVIGRGVTVGRPLGLL  177 (281)
T ss_dssp             HHH-T-----CC-CCCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             HhC-C-----CC-CCCCChHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCcHHHHHHHHH
Confidence            221 1     23 35566666654433    11                     235799999999999985 9999999


Q ss_pred             HHhcC--CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          184 MVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       184 la~~f--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      | ...  |++|..++++.                            .++.+.+++||+|+.+++.    .++|.++.   
T Consensus       178 L-~~~g~~atVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  221 (281)
T 2c2x_A          178 L-TRRSENATVTLCHTGT----------------------------RDLPALTRQADIVVAAVGV----AHLLTADM---  221 (281)
T ss_dssp             H-TSTTTCCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSCC----TTCBCGGG---
T ss_pred             H-hcCCCCCEEEEEECch----------------------------hHHHHHHhhCCEEEECCCC----CcccCHHH---
Confidence            7 678  89999886532                            3688999999999999984    33576655   


Q ss_pred             CCCCcEEEEcCCCchh
Q 015895          262 MKKEAILVNCSRGPVI  277 (398)
Q Consensus       262 mk~gailIN~aRG~~v  277 (398)
                      +|+|+++||++.-.+-
T Consensus       222 vk~GavVIDVgi~r~~  237 (281)
T 2c2x_A          222 VRPGAAVIDVGVSRTD  237 (281)
T ss_dssp             SCTTCEEEECCEEEET
T ss_pred             cCCCcEEEEccCCCCC
Confidence            4899999999986543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.47  E-value=2.6e-06  Score=82.12  Aligned_cols=172  Identities=15%  Similarity=0.255  Sum_probs=108.7

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCCc--c--ccHH-HHHHhhccCCceEEEeeccccccCc
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLTE--D--WGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~~--~--~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~  102 (398)
                      -++.|++.+....++ ..+++|+++.+.     +..|+|++..+-  .  +++. ++++..-.  |=|-    |+..+.+
T Consensus        60 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~--KDVD----G~hp~N~  132 (301)
T 1a4i_A           60 AEEIGIKATHIKLPR-TTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPE--KDVD----GLTSINA  132 (301)
T ss_dssp             HHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGG--GBTT----CCSHHHH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCC--CCcc----CCChhhH
Confidence            344577776655444 368888877664     247999998643  3  5554 34443221  2110    2222222


Q ss_pred             hHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 015895          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (398)
Q Consensus       103 ~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA  181 (398)
                      -.... |    +........+++-++.++    ++                     .+.+++|+++.|||.|. +|+.+|
T Consensus       133 G~l~~-g----~~~~~~~PcTp~gi~~ll----~~---------------------~~i~l~gk~vvVIG~s~iVG~p~A  182 (301)
T 1a4i_A          133 GRLAR-G----DLNDCFIPCTPKGCLELI----KE---------------------TGVPIAGRHAVVVGRSKIVGAPMH  182 (301)
T ss_dssp             HHHHT-T----CCSSCCCCHHHHHHHHHH----HT---------------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             HHHhc-C----CCCCCccCchHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCchHHHHHH
Confidence            22211 1    001134555666544333    21                     23579999999999996 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       182 ~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      +.| ...|++|..++++.                            .++.+.+++||+|+.+++.    .++|..+.   
T Consensus       183 ~lL-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  226 (301)
T 1a4i_A          183 DLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGDILVVATGQ----PEMVKGEW---  226 (301)
T ss_dssp             HHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCSEEEECCCC----TTCBCGGG---
T ss_pred             HHH-HhCCCeEEEEECCc----------------------------ccHHHHhccCCEEEECCCC----cccCCHHH---
Confidence            997 68999999886431                            4688999999999999985    34576655   


Q ss_pred             CCCCcEEEEcCCCchh
Q 015895          262 MKKEAILVNCSRGPVI  277 (398)
Q Consensus       262 mk~gailIN~aRG~~v  277 (398)
                      +|+|+++||++.-.+-
T Consensus       227 vk~GavVIDVgi~~~~  242 (301)
T 1a4i_A          227 IKPGAIVIDCGINYVP  242 (301)
T ss_dssp             SCTTCEEEECCCBC--
T ss_pred             cCCCcEEEEccCCCcc
Confidence            5899999999986543

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.47  E-value=3.4e-06  Score=80.74  Aligned_cols=168  Identities=14%  Similarity=0.233  Sum_probs=108.0

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++.+....++ ..+++|+.+.+.     +..|++++..+  ..++++ +++...-.  |-+-    |+-.+++-.
T Consensus        59 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDVD----G~~~~N~G~  131 (285)
T 3l07_A           59 CAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KDVD----GFHPTNVGR  131 (285)
T ss_dssp             HHHHTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--GBTT----CCSHHHHHH
T ss_pred             HHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcc--cccc----cCChhheee
Confidence            345677776655443 358888887662     14889999865  345543 44444221  2221    221222222


Q ss_pred             hhhcCceEEec-CCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHH
Q 015895          105 ANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (398)
Q Consensus       105 ~~~~gI~V~n~-p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~  182 (398)
                      ... |     . ++ ....++.-++.++    ++                     .+.+++||++.|||.|. +|+.+|+
T Consensus       132 l~~-g-----~~~~-~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~A~  179 (285)
T 3l07_A          132 LQL-R-----DKKC-LESCTPKGIMTML----RE---------------------YGIKTEGAYAVVVGASNVVGKPVSQ  179 (285)
T ss_dssp             HHH-T-----CTTC-CCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred             hhc-C-----CCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchhHHHHHH
Confidence            211 1     1 22 4455565555432    21                     23579999999999988 6999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcC
Q 015895          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~m  262 (398)
                      .| ...|++|...+++.                            .++++.+++||+|+.+++.    .++|..+.   +
T Consensus       180 lL-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---v  223 (285)
T 3l07_A          180 LL-LNAKATVTTCHRFT----------------------------TDLKSHTTKADILIVAVGK----PNFITADM---V  223 (285)
T ss_dssp             HH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCSEEEECCCC----TTCBCGGG---S
T ss_pred             HH-HHCCCeEEEEeCCc----------------------------hhHHHhcccCCEEEECCCC----CCCCCHHH---c
Confidence            97 68999999886531                            3688999999999999984    44566544   5


Q ss_pred             CCCcEEEEcCCCc
Q 015895          263 KKEAILVNCSRGP  275 (398)
Q Consensus       263 k~gailIN~aRG~  275 (398)
                      |+|+++||++.-.
T Consensus       224 k~GavVIDvgi~~  236 (285)
T 3l07_A          224 KEGAVVIDVGINH  236 (285)
T ss_dssp             CTTCEEEECCCEE
T ss_pred             CCCcEEEEecccC
Confidence            9999999998755

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.46  E-value=3e-07  Score=86.24  Aligned_cols=102  Identities=17%  Similarity=0.196  Sum_probs=69.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|||||+|.||+.+|+.| ...| .+|.+||+++... +.+.+.       .+     .....++++++ .||+|++++
T Consensus         1 m~i~iiG~G~mG~~~a~~l-~~~g~~~v~~~~r~~~~~-~~~~~~-------~g-----~~~~~~~~~~~-~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGL-VKQGGYRIYIANRGAEKR-ERLEKE-------LG-----VETSATLPELH-SDDVLILAV   65 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHCSCEEEEECSSHHHH-HHHHHH-------TC-----CEEESSCCCCC-TTSEEEECS
T ss_pred             CEEEEECchHHHHHHHHHH-HHCCCCeEEEECCCHHHH-HHHHHh-------cC-----CEEeCCHHHHh-cCCEEEEEe
Confidence            4799999999999999998 4668 8999999987542 221111       12     12234566777 999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      | ......++.  .+.. + +.++|+++.|--.  +.|.+.+..+
T Consensus        66 ~-~~~~~~v~~--~l~~-~-~~ivv~~~~g~~~--~~l~~~~~~~  103 (263)
T 1yqg_A           66 K-PQDMEAACK--NIRT-N-GALVLSVAAGLSV--GTLSRYLGGT  103 (263)
T ss_dssp             C-HHHHHHHHT--TCCC-T-TCEEEECCTTCCH--HHHHHHTTSC
T ss_pred             C-chhHHHHHH--Hhcc-C-CCEEEEecCCCCH--HHHHHHcCCC
Confidence            9 555555443  1222 4 8999999665433  6677777654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.42  E-value=1.3e-06  Score=89.02  Aligned_cols=119  Identities=14%  Similarity=0.173  Sum_probs=80.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC--------CCccccccCCHHHHhhcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--------QPVTWKRASSMDEVLREA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~sl~ell~~a  237 (398)
                      -+++|||+|.||..+|..|+ ..|.+|++||+++... +.+.+..... ...+.        ..-......++.+.++.|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La-~~G~~V~~~D~~~~kv-~~l~~g~~~~-~epgl~~~~~~~~~~g~l~~ttd~~ea~~~a   85 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFS-DFGHEVVCVDKDARKI-ELLHQNVMPI-YEPGLDALVASNVKAGRLSFTTDLAEGVKDA   85 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCSTTH-HHHTTTCCSS-CCTTHHHHHHHHHHTTCEEEESCHHHHHTTC
T ss_pred             eEEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHhcCCCCc-cCCCHHHHHHhhcccCCEEEECCHHHHHhcC
Confidence            37999999999999999985 6799999999987642 2211100000 00000        000112236788999999


Q ss_pred             CEEEEccCCChh----------hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          238 DVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       238 DiV~l~~Plt~~----------T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      |+|++|+|...+          .+..+ ++....+++|.++|++|.-.+-..+.+.+.+.+
T Consensus        86 Dvvii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e  145 (446)
T 4a7p_A           86 DAVFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE  145 (446)
T ss_dssp             SEEEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence            999999885432          33333 456778999999999998776666777777665

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.38  E-value=2.1e-06  Score=86.22  Aligned_cols=116  Identities=16%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh--------hhhhhcCCCCccccccCCHHHHhhcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      ++|+|||+|.||..+|..|+ . |.+|++||+++... +.+.+...        ..+.. .  ........++.+.++.|
T Consensus         1 MkI~VIG~G~vG~~~A~~La-~-G~~V~~~d~~~~~~-~~l~~~~~~i~e~~l~~~~~~-~--~~~l~~t~~~~~~~~~a   74 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLS-L-QNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKS-K--QLSIKATLDSKAAYKEA   74 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHh-C-CCEEEEEECCHHHH-HHHHcCCCCcCCCCHHHHHHh-c--cCcEEEeCCHHHHhcCC
Confidence            47999999999999999984 5 99999999987542 22111000        00000 0  00112234677888999


Q ss_pred             CEEEEccCCCh----------hhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          238 DVISLHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       238 DiV~l~~Plt~----------~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      |+|++++|...          .....+ ++... ++++.++|+.+.-++-..+.+.+.+...
T Consensus        75 Dvviiavpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           75 ELVIIATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             SEEEECCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             CEEEEecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            99999999753          244444 34455 8999999998887777777888877654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.38  E-value=1.2e-06  Score=79.28  Aligned_cols=124  Identities=12%  Similarity=0.156  Sum_probs=81.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|+| .|.||+.+|+.| ...|.+|.++|++.... +.+.+.++..+. ..  .  .. ..+++++++.+|+|++++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~-~~--~--~~-~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEKA-EAKAAEYRRIAG-DA--S--IT-GMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHHH-HHHHHHHHHHHS-SC--C--EE-EEEHHHHHHHCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHhccccc-cC--C--CC-hhhHHHHHhcCCEEEEeC
Confidence            4799999 999999999998 57899999999986542 221111110000 00  0  11 246888899999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc------------HHHHHHHHhcCCccEEEeccCCCCCC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVID------------EVALVEHLKQNPMFRVGLDVFEDEPY  304 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd------------e~aL~~aL~~g~i~gAalDV~~~EP~  304 (398)
                      |. ..++.++. +....++ +.++|+++.|--.+            .+.+.+.+..    ...++.+.+.|.
T Consensus        73 ~~-~~~~~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           73 PW-EHAIDTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             CH-HHHHHHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             Ch-hhHHHHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence            93 44555543 2333454 89999999865432            4667777753    245678777664

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.37  E-value=1.9e-06  Score=84.16  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=74.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-Cccc-cccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||+|.||+.+|..| ...|.+|.+||+++... +...+..+-.+...+.. .... ....+++++++.+|+|+++
T Consensus         5 mki~iiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            6899999999999999998 57899999999986542 22111100000000000 0000 1235788988999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +|.. .+..++ ++....+++++++|++ -|.......+.+.+..
T Consensus        83 v~~~-~~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           83 VPAI-HHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             SCGG-GHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             CCch-HHHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            9964 345555 5566778999999999 4412233334555543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.36  E-value=2.6e-06  Score=87.59  Aligned_cols=119  Identities=17%  Similarity=0.169  Sum_probs=78.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-fG~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      ++|+|||+|.||..+|..|++. .|.+|++||++.... +.+.+..        ...+...  ...+.....++.+.++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v-~~l~~g~~~i~e~gl~~~~~~~--~~~~l~~t~~~~~~~~~   86 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKI-AEWNSDKLPIYEPGLDEIVFAA--RGRNLFFSSDIPKAIAE   86 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSCSSCCTTHHHHHHHH--BTTTEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHCCCCCcCCCCHHHHHHHh--hcCCEEEECCHHHHhhc
Confidence            5899999999999999998643 389999999987542 2211000        0000000  00011223467788899


Q ss_pred             CCEEEEccCCChh--------------hhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          237 ADVISLHPVLDKT--------------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       237 aDiV~l~~Plt~~--------------T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      ||+|++|+|....              ....+ ++....+++|.++|++|.-.+-..+.+.+.+.+
T Consensus        87 aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           87 ADLIFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CCEEEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999999986432              22222 456677999999999988776666778777776

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.35  E-value=9.6e-07  Score=82.67  Aligned_cols=99  Identities=23%  Similarity=0.318  Sum_probs=67.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .++|||||+|.||+.+|+.|+ ..|    .+|.+||+++..                    .+.....+++++++.||+|
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~-~~g~~~~~~v~~~~~~~~~--------------------~g~~~~~~~~~~~~~~D~v   62 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIA-NANIIKKENLFYYGPSKKN--------------------TTLNYMSSNEELARHCDII   62 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHH-HHTSSCGGGEEEECSSCCS--------------------SSSEECSCHHHHHHHCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCCCCCeEEEEeCCccc--------------------CceEEeCCHHHHHhcCCEE
Confidence            468999999999999999984 556    689999987632                    1122335788889999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      ++++| ....+.++. +....++ +..+|.+..|-  +.+.+.+.+..+
T Consensus        63 i~~v~-~~~~~~v~~-~l~~~l~-~~~vv~~~~gi--~~~~l~~~~~~~  106 (262)
T 2rcy_A           63 VCAVK-PDIAGSVLN-NIKPYLS-SKLLISICGGL--NIGKLEEMVGSE  106 (262)
T ss_dssp             EECSC-TTTHHHHHH-HSGGGCT-TCEEEECCSSC--CHHHHHHHHCTT
T ss_pred             EEEeC-HHHHHHHHH-HHHHhcC-CCEEEEECCCC--CHHHHHHHhCCC
Confidence            99999 455666553 3444564 44555554442  334566666553

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.34  E-value=4.8e-06  Score=85.20  Aligned_cols=130  Identities=16%  Similarity=0.168  Sum_probs=78.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhh-----hhhhhcCCCCccccccCCHHHHhhc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYG-----QFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~-~~~-----~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      -++|||||+|.||..+|..+ ...|.+|++||++......  ...+ .+.     ..+..............++ +.+++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~l-a~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  114 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISF-ARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELST  114 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTT
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCC
Confidence            36899999999999999998 4779999999998754211  1000 000     0000000000001113456 45789


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~  299 (398)
                      ||+|+.++|...+.+.-+-++....++++++|++.+.+-  ....|.+.+... -.-+++..|
T Consensus       115 aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~--~~~~la~~~~~~-~~~ig~hf~  174 (463)
T 1zcj_A          115 VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDRP-QLVIGTHFF  174 (463)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSCG-GGEEEEEEC
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc--CHHHHHHHhcCC-cceEEeecC
Confidence            999999999755444444455667789999999744433  234666665432 234566666

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.31  E-value=3.3e-06  Score=83.64  Aligned_cols=109  Identities=13%  Similarity=0.116  Sum_probs=73.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CC-CCccccccCCHHHHhhcCCEEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      .++|+|||.|.||..+|..| ...|.+|..||+++... +...+. +...... +. .+.......++++.++.||+|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~L-a~~G~~V~l~~r~~~~~-~~i~~~-~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVL-ARKGQKVRLWSYESDHV-DEMQAE-GVNNRYLPNYPFPETLKAYCDLKASLEGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HTTTCCEEEECSCHHHH-HHHHHH-SSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHc-CCCcccCCCCccCCCeEEECCHHHHHhcCCEEEE
Confidence            46899999999999999998 47789999999986532 221110 0000000 00 01112223578899999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd  278 (398)
                      ++|. ...+.++ ++....++++.++|+++.|-..+
T Consensus       106 aVp~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          106 VVPS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             CCCH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             CCCH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            9994 3555555 45666789999999998876554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.29  E-value=5.4e-06  Score=85.24  Aligned_cols=119  Identities=13%  Similarity=0.134  Sum_probs=75.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--------CccccccCCHHHHhhc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLRE  236 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~sl~ell~~  236 (398)
                      .++|+|||+|.||..+|..|+ ..|.+|++||++.... +.+.+.... ....+..        ........++++.++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la-~~G~~V~~~d~~~~~v-~~l~~~~~~-i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~   84 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLA-DIGHDVFCLDVDQAKI-DILNNGGVP-IHEPGLKEVIARNRSAGRLRFSTDIEAAVAH   84 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCCS-SCCTTHHHHHHHHHHTTCEEEECCHHHHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHCCCCC-cCCCCHHHHHHHhcccCCEEEECCHHHHhhc
Confidence            368999999999999999984 7899999999987542 221110000 0000000        0011223578888899


Q ss_pred             CCEEEEccCCC---------hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          237 ADVISLHPVLD---------KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       237 aDiV~l~~Plt---------~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      ||+|++|+|..         ...+..+ ++....++++.++|+.|...+-..+.+.+.+.
T Consensus        85 aDvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~  143 (478)
T 2y0c_A           85 GDVQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA  143 (478)
T ss_dssp             CSEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred             CCEEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence            99999999963         2344443 44566799999999998644444444555444

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.28  E-value=2.5e-06  Score=83.51  Aligned_cols=107  Identities=17%  Similarity=0.192  Sum_probs=70.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC-------cEEEEEcCChh-----hHHHHHHhhhhhhhhhc-CC-CCccccccCCH
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKAN-GE-QPVTWKRASSM  230 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~sl  230 (398)
                      .++|+|||+|.||..+|..|+ ..|       .+|.+||++..     .. +...+. ....... +. .+.+.....++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~-~~g~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVG-GNAAQLAQFDPRVTMWVFEEDIGGKKLT-EIINTQ-HENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHH-HHHHHCTTEEEEEEEECCCCBSSSSBHH-HHHHHH-SCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEECCCHHHHHHHHHHH-hcCCcccCCCCeEEEEEcChhhhhhHHH-HHHHhc-CcccccCCcccCccCeEEEcCH
Confidence            358999999999999999985 456       89999999765     21 111100 0000000 00 01112223578


Q ss_pred             HHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       231 ~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      +++++.||+|++++|. ..+..++ ++....+++++++|+++.|-.
T Consensus        85 ~~~~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           85 VQAAEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            8889999999999994 4555555 345566889999999988754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.27  E-value=1.2e-06  Score=86.34  Aligned_cols=107  Identities=14%  Similarity=0.168  Sum_probs=70.0

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCC-CCccccccCCHHHHhhcCCEEEEcc
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      +|+|||+|.||..+|..| ...|.+|.+||++.... +...+.. ..... .+. .+.+.....+++++++.||+|++++
T Consensus        17 kI~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~~-~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav   93 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVL-SKKCREVCVWHMNEEEV-RLVNEKR-ENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   93 (366)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTEEEEEEECSCHHHH-HHHHHHT-BCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred             eEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHcC-cccccccccccccceeeeCCHHHHHcCCCEEEECC
Confidence            899999999999999998 56789999999986432 2211100 00000 000 0011223357888899999999999


Q ss_pred             CCChhhhhhccHH---HHhcCCC-CcEEEEcCCCchh
Q 015895          245 VLDKTTYHLINKE---RLATMKK-EAILVNCSRGPVI  277 (398)
Q Consensus       245 Plt~~T~~li~~~---~~~~mk~-gailIN~aRG~~v  277 (398)
                      |. ..+..++...   ....+++ +.++|+++.|-..
T Consensus        94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            94 5556665331   4455678 8999999876433

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.26  E-value=2.5e-06  Score=82.52  Aligned_cols=110  Identities=20%  Similarity=0.207  Sum_probs=72.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcC--ChhhHHHHHHhhhhhhhhhcCCCC------ccccccC--CHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQP------VTWKRAS--SMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--sl~ell~  235 (398)
                      ++|+|||+|.||+.+|..|+ ..|.+|.+||+  +... .+..        ...+...      .......  ++.+.++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~~-~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   70 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEI-LKSI--------SAGREHPRLGVKLNGVEIFWPEQLEKCLE   70 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHH-HHHH--------HTTCCBTTTTBCCCSEEEECGGGHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEEccCCHHH-HHHH--------HHhCcCcccCccccceEEecHHhHHHHHh
Confidence            47999999999999999984 66889999999  6543 2221        1111100      0011223  6778889


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc---h-hcHHHHHHHHhc
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP---V-IDEVALVEHLKQ  288 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~---~-vde~aL~~aL~~  288 (398)
                      .||+|++++|.. .+..++ ++... ++++.++|+++.|-   - -..+.+.+.+.+
T Consensus        71 ~~D~vi~~v~~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           71 NAEVVLLGVSTD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             cCCEEEEcCChH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            999999999964 555555 34455 88999999998774   1 122345566654

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.25  E-value=9.5e-06  Score=87.38  Aligned_cols=144  Identities=17%  Similarity=0.137  Sum_probs=86.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~sl~ell  234 (398)
                      =++|||||+|.||..+|..++ ..|.+|++||+++.....  ...+..-..+...|...        .......++ +.+
T Consensus       314 i~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~  391 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF  391 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred             CCEEEEECCChhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence            357999999999999999985 679999999998764221  00000000011112110        001122455 568


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n  314 (398)
                      ++||+|+.++|.+.+.+.-+-++..+.++++++++..+.+-.+  ..+.+.+... -...++..|.  |.     ..++.
T Consensus       392 ~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i--~~la~~~~~~-~~~ig~hf~~--P~-----~~~~l  461 (715)
T 1wdk_A          392 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALKRP-ENFVGMHFFN--PV-----HMMPL  461 (715)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCSCG-GGEEEEECCS--ST-----TTCCE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCH--HHHHHHhcCc-cceEEEEccC--Cc-----ccCce
Confidence            9999999999987766655556677789999999855444323  3555555321 2346666665  32     23445


Q ss_pred             eEEcCC
Q 015895          315 AIVVPH  320 (398)
Q Consensus       315 vilTPH  320 (398)
                      +.+.|+
T Consensus       462 vevv~g  467 (715)
T 1wdk_A          462 VEVIRG  467 (715)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            555554

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.24  E-value=2.2e-06  Score=82.09  Aligned_cols=169  Identities=17%  Similarity=0.180  Sum_probs=108.3

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHHH-HHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~~-l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++.+....++ ..+++|+++.+.     +..|+|++..+  ..+++.. +++..-.  |=|-    |+..+.+-.
T Consensus        58 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----G~~p~n~g~  130 (288)
T 1b0a_A           58 CEEVGFVSRSYDLPE-TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPD--KDVD----GFHPYNVGR  130 (288)
T ss_dssp             HHHHTCEECCEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTT--TCTT----CCSHHHHHH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCc--cCcc----cCCccchhH
Confidence            344577665444333 358888887663     24799999864  3455443 3333211  2110    222222222


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (398)
                      .. .|     .+ .....+++-++.++    ++                     .+.+++|+++.|||.|. +|+.+|+.
T Consensus       131 l~-~g-----~~-~~~PcTp~gi~~ll----~~---------------------~~i~l~gk~vvVIG~s~iVG~p~A~l  178 (288)
T 1b0a_A          131 LC-QR-----AP-RLRPCTPRGIVTLL----ER---------------------YNIDTFGLNAVVIGASNIVGRPMSME  178 (288)
T ss_dssp             HH-TT-----CC-SSCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             Hh-CC-----CC-CCCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCChHHHHHHHHH
Confidence            22 12     23 35556666644433    21                     23579999999999997 59999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ...|++|..++++.                            .++.+.+++||+|+.+++.    .++|..+.   +|
T Consensus       179 L-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Avg~----p~lI~~~~---vk  222 (288)
T 1b0a_A          179 L-LLAGCTTTVTHRFT----------------------------KNLRHHVENADLLIVAVGK----PGFIPGDW---IK  222 (288)
T ss_dssp             H-HTTTCEEEEECSSC----------------------------SCHHHHHHHCSEEEECSCC----TTCBCTTT---SC
T ss_pred             H-HHCCCeEEEEeCCc----------------------------hhHHHHhccCCEEEECCCC----cCcCCHHH---cC
Confidence            7 68999999886532                            3688999999999999984    33676655   49


Q ss_pred             CCcEEEEcCCCch
Q 015895          264 KEAILVNCSRGPV  276 (398)
Q Consensus       264 ~gailIN~aRG~~  276 (398)
                      +|+++||++.-.+
T Consensus       223 ~GavVIDVgi~r~  235 (288)
T 1b0a_A          223 EGAIVIDVGINRL  235 (288)
T ss_dssp             TTCEEEECCCEEC
T ss_pred             CCcEEEEccCCcc
Confidence            9999999998654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.24  E-value=2.9e-06  Score=87.20  Aligned_cols=112  Identities=15%  Similarity=0.137  Sum_probs=75.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-Cc-EEEEEcCChh----hHHHHHHhh------hhhhhh-------hcCCCCccccc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KM-NLIYYDLYQA----TRLEKFVTA------YGQFLK-------ANGEQPVTWKR  226 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~-~V~~~d~~~~----~~~~~~~~~------~~~~~~-------~~~~~~~~~~~  226 (398)
                      ++|+|||+|.||..+|..|+ .. |. +|++||+++.    .. +.+.+.      +...+.       ..+    ....
T Consensus        19 mkIaVIGlG~mG~~lA~~la-~~~G~~~V~~~D~~~~~~~~kv-~~l~~g~~~i~~~e~gl~~l~~~~~~~g----~l~~   92 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFA-DAPCFEKVLGFQRNSKSSGYKI-EMLNRGESPLKGEEPGLEELIGKVVKAG----KFEC   92 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HSTTCCEEEEECCCCTTTTTHH-HHHTTTCCCSSCCGGGHHHHHHHHHHTT----CEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-HhCCCCeEEEEECChhHhHHHH-HHHHhcCCCccccCCCHHHHHHhhcccC----CeEE
Confidence            58999999999999999985 56 89 9999999876    32 221110      000000       001    0111


Q ss_pred             cCCHHHHhhcCCEEEEccCCC--------hhhhhhc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 015895          227 ASSMDEVLREADVISLHPVLD--------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVE  284 (398)
Q Consensus       227 ~~sl~ell~~aDiV~l~~Plt--------~~T~~li--~~~~~~~mk~gailIN~aRG~~vde~aL~~  284 (398)
                      ..+ .+.++.||+|++++|..        ++...+.  -+.....+++|.++|+.|.-.+-..+.+.+
T Consensus        93 ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           93 TPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             ESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             eCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            234 57789999999999975        2333333  245677899999999999877766666665

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.23  E-value=7.4e-06  Score=88.33  Aligned_cols=142  Identities=18%  Similarity=0.142  Sum_probs=85.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCC--------CccccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQ--------PVTWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~--------~~~~~~~~sl~ell  234 (398)
                      ++|||||+|.||..+|..++ ..|.+|++||+++......  ..+ .+. .+...+..        ........++ +.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~-~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~  389 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVKANLQ-SRVRKGSMSQEKFEKTMSLLKGSLDY-ESF  389 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-TTTCCEEEECSSHHHHHHHHHHHHHHHH-HTTC----CTTHHHHTTTSEEEESSS-GGG
T ss_pred             cEEEEEcCCHhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHhcceEEeCCH-HHH
Confidence            57999999999999999984 6799999999987642211  000 000 00011110        0011223456 468


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCc
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~n  314 (398)
                      ++||+|+.++|-+.+.+.-+-++..+.++++++++..+.+-.+  ..+.+.++.. -.-.++..|.  |.     ..++.
T Consensus       390 ~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i--~~la~~~~~p-~~~iG~hf~~--P~-----~~~~l  459 (725)
T 2wtb_A          390 RDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDL--NKIGERTKSQ-DRIVGAHFFS--PA-----HIMPL  459 (725)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH--HHHTTTCSCT-TTEEEEEECS--ST-----TTCCE
T ss_pred             CCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCH--HHHHHHhcCC-CCEEEecCCC--Cc-----ccCce
Confidence            9999999999987666555556677789999999655444333  3455555321 1345666665  32     22345


Q ss_pred             eEEcCC
Q 015895          315 AIVVPH  320 (398)
Q Consensus       315 vilTPH  320 (398)
                      +.+.|+
T Consensus       460 vevv~g  465 (725)
T 2wtb_A          460 LEIVRT  465 (725)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            555554

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.21  E-value=1.9e-06  Score=74.00  Aligned_cols=103  Identities=12%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             cCCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          163 LKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       163 l~gktvGIIGl----G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+-++|+|||.    |++|+.++++| ...|.+|+.+||.....                   .+...+.|++|+.+..|
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L-~~~G~~V~~vnp~~~~i-------------------~G~~~~~s~~el~~~vD   71 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVD   71 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCC
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHH-HHCCCEEEEeCCCCCeE-------------------CCeeecCCHHHhCCCCC
Confidence            45578999999    99999999998 67899988888864221                   12233468889988999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++++++| .+....++. +..+ ...++++++.+.    ..+++.+..++..+.
T Consensus        72 lvii~vp-~~~v~~v~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           72 VIVFVVP-PKVGLQVAK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             EEEECSC-HHHHHHHHH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             EEEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            9999999 467777764 3444 666777777754    257777777765554

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.19  E-value=2.6e-06  Score=84.46  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=67.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC-------cEEEEEcCChh-----hHHHHHHhhhhhhhhh-cCC-CCccccccCCHH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMD  231 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~sl~  231 (398)
                      ++|+|||.|.||..+|..|+ ..|       .+|.+||++..     .. +...+. ...... .+. .+.+.....+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~-~~G~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~   98 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVG-TNAKNNYLFENEVRMWIRDEFVNGERMV-DIINNK-HENTKYLKGVPLPHNIVAHSDLA   98 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHH-HHHHHCTTBCSCEEEECCSCC---CCHH-HHHHHH-CBCTTTSTTCBCCTTEEEESSTH
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCccCCCCCeEEEEECChhhhhHHHH-HHHHhc-CcccccCCcccCcCCeEEECCHH
Confidence            47999999999999999985 445       89999998765     21 111110 000000 000 011122335788


Q ss_pred             HHhhcCCEEEEccCCChhhhhhccHHHHh----cCCCCcEEEEcCCC
Q 015895          232 EVLREADVISLHPVLDKTTYHLINKERLA----TMKKEAILVNCSRG  274 (398)
Q Consensus       232 ell~~aDiV~l~~Plt~~T~~li~~~~~~----~mk~gailIN~aRG  274 (398)
                      ++++.||+|++++|. ...+.++. +...    .+++++++|+++.|
T Consensus        99 ea~~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~G  143 (375)
T 1yj8_A           99 SVINDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKG  143 (375)
T ss_dssp             HHHTTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCS
T ss_pred             HHHcCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCc
Confidence            888999999999994 55555553 3444    67889999999877

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.19  E-value=4.8e-06  Score=77.26  Aligned_cols=97  Identities=24%  Similarity=0.251  Sum_probs=71.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV~l~  243 (398)
                      ++|||||+|.||+.+++.+. .-|+++ .+||++...  +                .    .+.++++++ .++|+|+++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~--~----------------~----~~~~~~~l~~~~~DvVv~~   57 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEH--E----------------K----MVRGIDEFLQREMDVAVEA   57 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCC--T----------------T----EESSHHHHTTSCCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcch--h----------------h----hcCCHHHHhcCCCCEEEEC
Confidence            47999999999999999984 678887 688886421  0                0    246889998 699999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde---~aL~~aL~~g~  290 (398)
                      +|.. ...    +.....++.|..+|+.+.+..-++   +.|.++.++..
T Consensus        58 ~~~~-~~~----~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g  102 (236)
T 2dc1_A           58 ASQQ-AVK----DYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTG  102 (236)
T ss_dssp             SCHH-HHH----HHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHC
T ss_pred             CCHH-HHH----HHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcC
Confidence            9942 222    223456788999999998876655   56777776533

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.17  E-value=3.5e-06  Score=80.25  Aligned_cols=165  Identities=9%  Similarity=0.108  Sum_probs=105.6

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHHHH-HHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~~l-~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|+ .+....++ ..+++|+++.+.     +..|++++..+  ..+++..+ ++..-.  |=|-    |+..+.+..
T Consensus        52 ~~~~Gi-~~~~~lp~-~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~p~--KDVD----G~~p~n~G~  123 (276)
T 3ngx_A           52 GKKIGI-AVDLEKYD-DISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIPYY--KDVD----ALSPYNQGL  123 (276)
T ss_dssp             HHHHTC-EEEEEEES-SCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSCGG--GBTT----CCSHHHHHH
T ss_pred             HHHCCe-EEEEECCC-CCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCCCC--Cccc----CCCccchhh
Confidence            344577 65544333 368888887773     24899999865  44555443 332111  2110    221222222


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (398)
                      ... |     .++ ....++.-++.++    ++                     .+  ++||++.|||.|. +|+.+|+.
T Consensus       124 l~~-g-----~~~-~~PcTp~gv~~lL----~~---------------------~~--l~Gk~vvVvG~s~iVG~plA~l  169 (276)
T 3ngx_A          124 IAL-N-----REF-LVPATPRAVIDIM----DY---------------------YG--YHENTVTIVNRSPVVGRPLSMM  169 (276)
T ss_dssp             HHT-T-----CCS-SCCHHHHHHHHHH----HH---------------------HT--CCSCEEEEECCCTTTHHHHHHH
T ss_pred             hhc-C-----CCC-CCCCcHHHHHHHH----HH---------------------hC--cCCCEEEEEcCChHHHHHHHHH
Confidence            211 1     233 4455565555433    10                     12  8999999999986 79999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | .+.|++|.+++++.                            .++++.+++||+|+.+++.    .++|.++.   +|
T Consensus       170 L-~~~gAtVtv~~~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---vk  213 (276)
T 3ngx_A          170 L-LNRNYTVSVCHSKT----------------------------KDIGSMTRSSKIVVVAVGR----PGFLNREM---VT  213 (276)
T ss_dssp             H-HHTTCEEEEECTTC----------------------------SCHHHHHHHSSEEEECSSC----TTCBCGGG---CC
T ss_pred             H-HHCCCeEEEEeCCc----------------------------ccHHHhhccCCEEEECCCC----CccccHhh---cc
Confidence            7 68999999886531                            4688999999999999985    34676644   59


Q ss_pred             CCcEEEEcCCCc
Q 015895          264 KEAILVNCSRGP  275 (398)
Q Consensus       264 ~gailIN~aRG~  275 (398)
                      +|+++||++.-.
T Consensus       214 ~GavVIDvgi~~  225 (276)
T 3ngx_A          214 PGSVVIDVGINY  225 (276)
T ss_dssp             TTCEEEECCCEE
T ss_pred             CCcEEEEeccCc
Confidence            999999998754

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.16  E-value=3e-06  Score=77.85  Aligned_cols=93  Identities=22%  Similarity=0.233  Sum_probs=61.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      -++|||||+|+||+.+|+.| ...|.+|.+ ||+++... +.+.+.+       +.     ....+..+.++.+|+|+++
T Consensus        23 mmkI~IIG~G~mG~~la~~l-~~~g~~V~~v~~r~~~~~-~~l~~~~-------g~-----~~~~~~~~~~~~aDvVila   88 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERF-TAAQIPAIIANSRGPASL-SSVTDRF-------GA-----SVKAVELKDALQADVVILA   88 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHH-HHTTCCEEEECTTCGGGG-HHHHHHH-------TT-----TEEECCHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCCHHHH-HHHHHHh-------CC-----CcccChHHHHhcCCEEEEe
Confidence            36899999999999999998 467899998 99987542 2211111       11     1112445568899999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +|. .....++.+  +.. .++.++|+++-|-
T Consensus        89 vp~-~~~~~v~~~--l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           89 VPY-DSIADIVTQ--VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             SCG-GGHHHHHTT--CSC-CTTCEEEECCCCB
T ss_pred             CCh-HHHHHHHHH--hhc-cCCCEEEEcCCCC
Confidence            993 333433321  222 3588999998653

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.16  E-value=8.3e-06  Score=82.73  Aligned_cols=111  Identities=19%  Similarity=0.242  Sum_probs=75.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH--------
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV--------  233 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el--------  233 (398)
                      .-+|.++.|||+|.||..+|..|+ ..|.+|++||+++... +.+.+         +..+.   ....++|+        
T Consensus         8 ~~~~~~~~ViGlGyvGlp~A~~La-~~G~~V~~~D~~~~kv-~~L~~---------g~~pi---~epgl~~ll~~~~~~g   73 (431)
T 3ojo_A            8 HHHGSKLTVVGLGYIGLPTSIMFA-KHGVDVLGVDINQQTI-DKLQN---------GQISI---EEPGLQEVYEEVLSSG   73 (431)
T ss_dssp             ----CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHT---------TCCSS---CCTTHHHHHHHHHHTT
T ss_pred             cccCCccEEEeeCHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHHC---------CCCCc---CCCCHHHHHHhhcccC
Confidence            357889999999999999999985 6799999999988653 22111         11111   01122222        


Q ss_pred             -------hhcCCEEEEccCCChh--------hhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895          234 -------LREADVISLHPVLDKT--------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (398)
Q Consensus       234 -------l~~aDiV~l~~Plt~~--------T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL  286 (398)
                             ++.||+|++|+|....        ...+..  +...+.+++|.++|+.|+-.+-..+.+.+.+
T Consensus        74 ~l~~ttd~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i  143 (431)
T 3ojo_A           74 KLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV  143 (431)
T ss_dssp             CEEEESSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred             ceEEeCchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence                   3579999999996542        122332  4567789999999999998887777776654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.16  E-value=2.5e-06  Score=83.12  Aligned_cols=100  Identities=16%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             cccccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---c--CCHHH
Q 015895          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---A--SSMDE  232 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~I-G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~sl~e  232 (398)
                      .|.++.|+++.|||.|.| |+.+|+.| .+.|++|.++|++.....+.        .............   .  .++++
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L-~~~gAtVtv~nR~~~~l~~r--------a~~la~~~~~~t~~~~t~~~~L~e  241 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTR--------GESLKLNKHHVEDLGEYSEDLLKK  241 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEES--------CCCSSCCCCEEEEEEECCHHHHHH
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHH-HHCCCEEEEEeCchHHHHhH--------HHHHhhhcccccccccccHhHHHH
Confidence            456899999999999975 99999997 68999999999874321100        0000000000000   1  46889


Q ss_pred             HhhcCCEEEEccCCChhhhhh-ccHHHHhcCCCCcEEEEcCCC
Q 015895          233 VLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       233 ll~~aDiV~l~~Plt~~T~~l-i~~~~~~~mk~gailIN~aRG  274 (398)
                      .+++||+|+.+++.    .++ |..+.   +|+|+++||+|..
T Consensus       242 ~l~~ADIVIsAtg~----p~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          242 CSLDSDVVITGVPS----ENYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             HHHHCSEEEECCCC----TTCCBCTTT---SCTTEEEEECSSS
T ss_pred             HhccCCEEEECCCC----CcceeCHHH---cCCCeEEEEcCCC
Confidence            99999999999985    334 66555   4899999999874

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.15  E-value=3.7e-06  Score=80.29  Aligned_cols=119  Identities=18%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC-CCccccccCCHHHHhh---cCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLR---EADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sl~ell~---~aDiV~  241 (398)
                      ++|+|||+|.||+.+|..| ...|.+|.+||+++... +...+. +......+. ...... ..+.+++.+   .+|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~~-~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIML-HQGGNDVTLIDQWPAHI-EAIRKN-GLIADFNGEEVVANLP-IFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHH-CEEEEETTEEEEECCC-EECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhC-CEEEEeCCCeeEecce-eecchhhcccCCCCCEEE
Confidence            5899999999999999998 46789999999986532 221110 000000000 000000 112334444   899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +++|. ..+..++ ++....++++.++|+++.|- -..+.+.+.+...++
T Consensus        80 ~~v~~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~v  126 (316)
T 2ew2_A           80 ALTKA-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENI  126 (316)
T ss_dssp             ECSCH-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGE
T ss_pred             EEecc-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccE
Confidence            99994 4555555 34556788999999998753 234556666654433

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.15  E-value=3.7e-06  Score=81.02  Aligned_cols=171  Identities=22%  Similarity=0.240  Sum_probs=107.9

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      .++.|++.+....++ ..+++|+++.+.     +..|++++..+  ..++++ +++...-.  |=+-    |+-.+++-.
T Consensus        62 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDVD----G~~~~N~G~  134 (300)
T 4a26_A           62 AAEVGMASFNVELPE-DISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPH--KDAD----ALLPVNVGL  134 (300)
T ss_dssp             HHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGG--GCTT----CCSHHHHHH
T ss_pred             HHHcCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcc--cccc----cCCcceEEE
Confidence            445688776655443 358888887663     14889999865  345544 34443211  2110    111122211


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (398)
                      ....+    ..++ ....+++-++.++    ++                     .+.+++||++.|||.|. +|+.+|+.
T Consensus       135 l~~g~----~~~~-~~PcTp~gv~~lL----~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~A~l  184 (300)
T 4a26_A          135 LHYKG----REPP-FTPCTAKGVIVLL----KR---------------------CGIEMAGKRAVVLGRSNIVGAPVAAL  184 (300)
T ss_dssp             HHCTT----CCCS-CCCHHHHHHHHHH----HH---------------------HTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             eecCC----CcCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCchHHHHHHHH
Confidence            11110    0122 3455565555433    21                     23579999999999988 79999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH--HHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~--ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      | ...|++|.+++++.                            .+++  +.+++||+|+.++|.    .++|..+.   
T Consensus       185 L-~~~gAtVtv~~~~T----------------------------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~~---  228 (300)
T 4a26_A          185 L-MKENATVTIVHSGT----------------------------STEDMIDYLRTADIVIAAMGQ----PGYVKGEW---  228 (300)
T ss_dssp             H-HHTTCEEEEECTTS----------------------------CHHHHHHHHHTCSEEEECSCC----TTCBCGGG---
T ss_pred             H-HHCCCeEEEEeCCC----------------------------CCchhhhhhccCCEEEECCCC----CCCCcHHh---
Confidence            7 68999999987632                            1355  889999999999995    34566544   


Q ss_pred             CCCCcEEEEcCCCch
Q 015895          262 MKKEAILVNCSRGPV  276 (398)
Q Consensus       262 mk~gailIN~aRG~~  276 (398)
                      +|+|+++||++.-.+
T Consensus       229 vk~GavVIDvgi~~~  243 (300)
T 4a26_A          229 IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             SCTTCEEEECCCEEE
T ss_pred             cCCCcEEEEEeccCC
Confidence            599999999987543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.14  E-value=4.3e-06  Score=81.49  Aligned_cols=93  Identities=17%  Similarity=0.335  Sum_probs=64.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC------ccccccCCHHHHhhcCC
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP------VTWKRASSMDEVLREAD  238 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~sl~ell~~aD  238 (398)
                      ..+|+|||+|.||..+|++|+ ..|.+|.+||+++... +.+.+        .+...      .+.....++++ ++.+|
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~-~~G~~V~~~~r~~~~~-~~l~~--------~g~~~~~~~~~~~~~~~~~~~~-~~~aD   82 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLH-ENGEEVILWARRKEIV-DLINV--------SHTSPYVEESKITVRATNDLEE-IKKED   82 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSHHHH-HHHHH--------HSCBTTBTTCCCCSEEESCGGG-CCTTE
T ss_pred             CCcEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHH-HHHHH--------hCCcccCCCCeeeEEEeCCHHH-hcCCC
Confidence            357999999999999999984 6789999999986532 22111        11100      01223356778 88999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCC-CCcEEEEcCCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMK-KEAILVNCSRG  274 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk-~gailIN~aRG  274 (398)
                      +|++++|. ..++.++.     .++ ++.++|+++-|
T Consensus        83 vVil~vk~-~~~~~v~~-----~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           83 ILVIAIPV-QYIREHLL-----RLPVKPSMVLNLSKG  113 (335)
T ss_dssp             EEEECSCG-GGHHHHHT-----TCSSCCSEEEECCCC
T ss_pred             EEEEECCH-HHHHHHHH-----HhCcCCCEEEEEeCC
Confidence            99999994 55555543     333 78999999976

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.13  E-value=3.5e-06  Score=79.55  Aligned_cols=96  Identities=10%  Similarity=0.078  Sum_probs=65.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cc-cccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TW-KRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~sl~ell~~aDiV~l  242 (398)
                      ++|+|||+|.||+.+|..| ...|.+|.+||++.... +.        +...+....  .. ....+ .+.++.+|+|++
T Consensus         1 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~r~~~~~-~~--------l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~   69 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPY-CS--------VNLVETDGSIFNESLTAND-PDFLATSDLLLV   69 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSE-EE--------EEEECTTSCEEEEEEEESC-HHHHHTCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHH-HhCCCCEEEEEcCccce-ee--------EEEEcCCCceeeeeeeecC-ccccCCCCEEEE
Confidence            4799999999999999998 46789999999976431 11        111111000  00 01233 466789999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      ++|.. .+..++ ++....+++++++|+++.|
T Consensus        70 ~v~~~-~~~~v~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           70 TLKAW-QVSDAV-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             CSCGG-GHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             EecHH-hHHHHH-HHHHhhCCCCCEEEEecCC
Confidence            99964 456555 4556678899999998765

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.12  E-value=1.1e-05  Score=76.04  Aligned_cols=105  Identities=16%  Similarity=0.174  Sum_probs=74.2

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++| +++|||.|.+|++++..| ...|+ +|.+++|+.... +.+        .    ...+.....++.+.++++|+|+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L-~~~G~~~I~v~nR~~~ka-~~l--------a----~~~~~~~~~~~~~~~~~aDiVI  171 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYAL-LQMGVKDIWVVNRTIERA-KAL--------D----FPVKIFSLDQLDEVVKKAKSLF  171 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHH-HHTTCCCEEEEESCHHHH-HTC--------C----SSCEEEEGGGHHHHHHTCSEEE
T ss_pred             CCC-eEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHH--------H----HHcccCCHHHHHhhhcCCCEEE
Confidence            678 999999999999999998 57898 899999987542 211        0    1111122356788899999999


Q ss_pred             EccCCC--hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          242 LHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       242 l~~Plt--~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      .++|..  ++ ...++.+.   ++++.+++|+.-+   .+.-|.++.+.|
T Consensus       172 natp~gm~p~-~~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          172 NTTSVGMKGE-ELPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             ECSSTTTTSC-CCSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             ECCCCCCCCC-CCCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            999863  22 12344433   4689999999988   455555666655

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.12  E-value=5e-06  Score=79.55  Aligned_cols=108  Identities=14%  Similarity=0.116  Sum_probs=71.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++.||++.|+|.|.+|+.++..| ...|+ +|.+++|+..... .        +.    .........++.++++++|+|
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a~-~--------la----~~~~~~~~~~~~~~~~~aDiV  179 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANEL-YKIVRPTLTVANRTMSRFN-N--------WS----LNINKINLSHAESHLDEFDII  179 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHH-HTTCCSCCEEECSCGGGGT-T--------CC----SCCEEECHHHHHHTGGGCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHHH-H--------HH----HhcccccHhhHHHHhcCCCEE
Confidence            58899999999999999999998 68898 8999999875421 1        00    111111223566778899999


Q ss_pred             EEccCCC--hhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          241 SLHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       241 ~l~~Plt--~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      +.++|..  ++....++   .+.++++.+++|+..... .+. |+++.++
T Consensus       180 InaTp~Gm~~~~~~~l~---~~~l~~~~~V~D~vY~P~-~T~-ll~~A~~  224 (277)
T 3don_A          180 INTTPAGMNGNTDSVIS---LNRLASHTLVSDIVYNPY-KTP-ILIEAEQ  224 (277)
T ss_dssp             EECCC-------CCSSC---CTTCCSSCEEEESCCSSS-SCH-HHHHHHH
T ss_pred             EECccCCCCCCCcCCCC---HHHcCCCCEEEEecCCCC-CCH-HHHHHHH
Confidence            9999964  22222232   456789999999987643 343 5444443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.06  E-value=4.8e-06  Score=73.78  Aligned_cols=100  Identities=11%  Similarity=0.141  Sum_probs=65.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH--h
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV--L  234 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el--l  234 (398)
                      .++.+++++|+|+|.+|+.+|+.| ... |.+|+++|+++... +.        +...+.... .....+   +.++  +
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L-~~~~g~~V~vid~~~~~~-~~--------~~~~g~~~~-~gd~~~~~~l~~~~~~  103 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDEL-RARYGKISLGIEIREEAA-QQ--------HRSEGRNVI-SGDATDPDFWERILDT  103 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHH-HHHHCSCEEEEESCHHHH-HH--------HHHTTCCEE-ECCTTCHHHHHTBCSC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHH-HhccCCeEEEEECCHHHH-HH--------HHHCCCCEE-EcCCCCHHHHHhccCC
Confidence            457788999999999999999998 677 99999999987542 11        111222111 101122   3343  6


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .++|+|++++|....+..++  ..+..+.+...+|..+.
T Consensus       104 ~~ad~vi~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          104 GHVKLVLLAMPHHQGNQTAL--EQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             CCCCEEEECCSSHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred             CCCCEEEEeCCChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence            78999999999654444433  35666676666666444

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.05  E-value=3e-06  Score=73.19  Aligned_cols=102  Identities=9%  Similarity=0.145  Sum_probs=74.1

Q ss_pred             CCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       165 gktvGIIGl----G~IG~~vA~~la~~fG~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      -++|+|||+    |++|..++++| ...|.+|+.+||..  ...                   .+...+.+++|+....|
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L-~~~G~~v~~vnp~~~g~~i-------------------~G~~~~~sl~el~~~~D   72 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYL-LDQGYHVIPVSPKVAGKTL-------------------LGQQGYATLADVPEKVD   72 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHH-HHHTCCEEEECSSSTTSEE-------------------TTEECCSSTTTCSSCCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHH-HHCCCEEEEeCCccccccc-------------------CCeeccCCHHHcCCCCC
Confidence            467999999    89999999998 67788898888865  210                   12233457888888999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      ++++++| .+....++.+ ..+ ...++++++.+.  .  ++++.+++++..+.-
T Consensus        73 lvii~vp-~~~v~~v~~~-~~~-~g~~~i~i~~~~--~--~~~l~~~a~~~Gi~~  120 (145)
T 2duw_A           73 MVDVFRN-SEAAWGVAQE-AIA-IGAKTLWLQLGV--I--NEQAAVLAREAGLSV  120 (145)
T ss_dssp             EEECCSC-STHHHHHHHH-HHH-HTCCEEECCTTC--C--CHHHHHHHHTTTCEE
T ss_pred             EEEEEeC-HHHHHHHHHH-HHH-cCCCEEEEcCCh--H--HHHHHHHHHHcCCEE
Confidence            9999999 4677777743 333 566777777642  2  677888888766543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.02  E-value=5.8e-05  Score=73.57  Aligned_cols=149  Identities=12%  Similarity=0.079  Sum_probs=93.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCCC----c-----cccccCCHH
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP----V-----TWKRASSMD  231 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~----~-----~~~~~~sl~  231 (398)
                      .-.+|+|||.|.||+.+|..++ ..|++|+.||+++.....  .... .+. .+...+...    .     ......+++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~-~~~~~g~~~~~~~~~~~l~~i~~~~~l~   82 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFA-SGGFRVKLYDIEPRQITGALENIRKEMK-SLQQSGSLKGSLSAEEQLSLISSCTNLA   82 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHH-HHHHTTCCCSSSCHHHHHHTEEEECCHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHH-HHHHcCCCCCccCHHHHHhhcccccchH
Confidence            3468999999999999999984 789999999998764211  1111 111 111111110    0     112346788


Q ss_pred             HHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCC
Q 015895          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE  311 (398)
Q Consensus       232 ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~  311 (398)
                      +.++.||+|+=++|-+-+.+.-+-++.=+.++++++|-..+++=  .-..|.++++. .=...++=-|.+-|  --||. 
T Consensus        83 ~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl--~is~ia~~~~~-p~r~ig~HffNP~~--~m~LV-  156 (319)
T 3ado_A           83 EAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCL--LPSKLFTGLAH-VKQCIVAHPVNPPY--YIPLV-  156 (319)
T ss_dssp             HHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSC--CHHHHHTTCTT-GGGEEEEEECSSTT--TCCEE-
T ss_pred             hHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhc--cchhhhhhccC-CCcEEEecCCCCcc--ccchH-
Confidence            99999999999999888877767677777899999997666653  34666666653 22334443343211  12333 


Q ss_pred             CCceEEcCCCC
Q 015895          312 MKNAIVVPHIA  322 (398)
Q Consensus       312 ~~nvilTPHia  322 (398)
                        -|+-+|+.+
T Consensus       157 --Eiv~g~~Ts  165 (319)
T 3ado_A          157 --ELVPHPETS  165 (319)
T ss_dssp             --EEEECTTCC
T ss_pred             --HhcCCCCCc
Confidence              367777655

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.02  E-value=2.2e-05  Score=75.71  Aligned_cols=114  Identities=16%  Similarity=0.169  Sum_probs=74.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++.|++++|+|.|.+|+.+|..| ...|+ +|.+++|+.... +.+.+.+       +..........++.+.+.++|+|
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L-~~~G~~~V~v~nR~~~ka-~~la~~~-------~~~~~~~~~~~~~~~~~~~aDiv  208 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSL-LSTAAERIDMANRTVEKA-ERLVREG-------DERRSAYFSLAEAETRLAEYDII  208 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECSSHHHH-HHHHHHS-------CSSSCCEECHHHHHHTGGGCSEE
T ss_pred             CCCCCEEEEECcHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHh-------hhccCceeeHHHHHhhhccCCEE
Confidence            57899999999999999999998 58898 999999987542 2222111       11000011112466778899999


Q ss_pred             EEccCCChhh--hh-hccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          241 SLHPVLDKTT--YH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       241 ~l~~Plt~~T--~~-li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      +.++|.....  .. .++   .+.++++.+++|++... ..+. |.++.++.
T Consensus       209 In~t~~~~~~~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T~-ll~~A~~~  255 (297)
T 2egg_A          209 INTTSVGMHPRVEVQPLS---LERLRPGVIVSDIIYNP-LETK-WLKEAKAR  255 (297)
T ss_dssp             EECSCTTCSSCCSCCSSC---CTTCCTTCEEEECCCSS-SSCH-HHHHHHHT
T ss_pred             EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEcCCCC-CCCH-HHHHHHHC
Confidence            9999975421  11 133   34578899999998853 3333 55555543

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=97.97  E-value=7.5e-06  Score=76.35  Aligned_cols=71  Identities=10%  Similarity=0.137  Sum_probs=56.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .-++|||||+|.||.++|+.| +..|.+|.+||+.                                ++ ++.||  +++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L-~~~G~~V~~~~~~--------------------------------~~-~~~aD--ila   48 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKL-DSVGHYVTVLHAP--------------------------------ED-IRDFE--LVV   48 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHH-HHTTCEEEECSSG--------------------------------GG-GGGCS--EEE
T ss_pred             CCcEEEEEeeCHHHHHHHHHH-HHCCCEEEEecCH--------------------------------HH-hccCC--EEE
Confidence            346899999999999999998 5779999998762                                11 46789  888


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|.. ....++ ++....+++|+++++++
T Consensus        49 vP~~-ai~~vl-~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           49 IDAH-GVEGYV-EKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             ECSS-CHHHHH-HHHHTTCCTTCEEEECC
T ss_pred             EcHH-HHHHHH-HHHHHhcCCCCEEEEEC
Confidence            8874 666665 45666789999999985

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.97  E-value=3e-05  Score=76.52  Aligned_cols=99  Identities=18%  Similarity=0.242  Sum_probs=68.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..+++||||.|.+|+.+++.++...+ .+|.+||+++... +.+.+.+    ...  .......+.++++++++||+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a-~~la~~~----~~~--~g~~~~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANL----KEY--SGLTIRRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHH----TTC--TTCEEEECSSHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHHH----Hhc--cCceEEEeCCHHHHHhcCCEEEE
Confidence            46789999999999999987643344 5899999987542 2322221    110  01112335689999999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ++|.. ....++..   +.+++|..+++++.
T Consensus       201 aTps~-~~~pvl~~---~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          201 VTADK-AYATIITP---DMLEPGMHLNAVGG  227 (350)
T ss_dssp             CCCCS-SEEEEECG---GGCCTTCEEEECSC
T ss_pred             eccCC-CCCceecH---HHcCCCCEEEECCC
Confidence            99975 22345543   56899999999985

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.95  E-value=1.1e-05  Score=77.31  Aligned_cols=118  Identities=13%  Similarity=0.072  Sum_probs=70.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-----C-cEEEEEcCChhhHHHHHHhhhhhhhhhc-CC-CCccccccCCHHHHhhcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-----K-MNLIYYDLYQATRLEKFVTAYGQFLKAN-GE-QPVTWKRASSMDEVLREA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-----G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~sl~ell~~a  237 (398)
                      ++|+|||+|.||..+|.+|+ ..     | .+|.+|++ . ...+.+.+..+...... +. .........+. +.++.+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~-~~~~~~~g~~~V~~~~r-~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~   84 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLA-LRAAATDGLLEVSWIAR-G-AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVGTV   84 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHHHHTTSSEEEEEECC-H-HHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHCCE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCccccCCCCCEEEEEc-H-HHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccCCC
Confidence            58999999999999999985 45     8 89999998 4 32332211011000000 00 00000011233 457899


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      |+|++++|.. .+..++ ++....++++.++|++.-| +-.++.|.+.+...+
T Consensus        85 D~vil~vk~~-~~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           85 DYILFCTKDY-DMERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EEEEECCSSS-CHHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTT
T ss_pred             CEEEEecCcc-cHHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCc
Confidence            9999999964 455554 3444567789999999776 322355666664433

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.94  E-value=4.3e-05  Score=74.25  Aligned_cols=95  Identities=18%  Similarity=0.297  Sum_probs=66.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..++++|||.|.+|+.+++.++..++ -+|.+|||+....+.   +.+..   ..+   ..+... ++++++++||+|++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la---~~l~~---~~g---~~~~~~-~~~eav~~aDIVi~  189 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEIL---ERIGR---RCG---VPARMA-APADIAAQADIVVT  189 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHH---HHHHH---HHT---SCEEEC-CHHHHHHHCSEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHH---HHHHH---hcC---CeEEEe-CHHHHHhhCCEEEE
Confidence            45789999999999999998754344 589999999222221   11100   012   112234 89999999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      |+|.+   ..++..   ..+|+|+.+++++.-
T Consensus       190 aT~s~---~pvl~~---~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          190 ATRST---TPLFAG---QALRAGAFVGAIGSS  215 (313)
T ss_dssp             CCCCS---SCSSCG---GGCCTTCEEEECCCS
T ss_pred             ccCCC---CcccCH---HHcCCCcEEEECCCC
Confidence            99963   345543   468999999999764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.89  E-value=9.1e-05  Score=61.62  Aligned_cols=96  Identities=13%  Similarity=0.178  Sum_probs=58.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH---H-hhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---V-LREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e---l-l~~aDiV  240 (398)
                      +++++|+|+|.+|+.+|+.| ...|.+|+++|+++... +...+.       .+.... .....+.+.   . +.++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~~-------~~~~~~-~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAE-------IDALVI-NGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHH-------CSSEEE-ESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHh-------cCcEEE-EcCCCCHHHHHHcCcccCCEE
Confidence            57899999999999999998 57899999999976532 221111       011000 001122222   2 5789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      ++++|....+  ..-......++++.+++-+.
T Consensus        74 i~~~~~~~~~--~~~~~~~~~~~~~~ii~~~~  103 (140)
T 1lss_A           74 IAVTGKEEVN--LMSSLLAKSYGINKTIARIS  103 (140)
T ss_dssp             EECCSCHHHH--HHHHHHHHHTTCCCEEEECS
T ss_pred             EEeeCCchHH--HHHHHHHHHcCCCEEEEEec
Confidence            9999864322  22234455677776665443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.87  E-value=4.4e-06  Score=79.35  Aligned_cols=90  Identities=11%  Similarity=0.129  Sum_probs=55.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|||||+|+||+.+|+.++ .. .+| .+||++.... +...+.       .+.      ...++++++++||+|++++
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~-~~v~~v~~~~~~~~-~~~~~~-------~g~------~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLK-DR-YEIGYILSRSIDRA-RNLAEV-------YGG------KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC------CCCEECSSHHHH-HHHHHH-------TCC------CCCSSCCCCC---CEEECS
T ss_pred             ceEEEEeCCHHHHHHHHHHH-Hc-CcEEEEEeCCHHHH-HHHHHH-------cCC------ccCCHHHHHhcCCEEEEeC
Confidence            47999999999999999874 44 788 4899987542 221111       121      2245677788999999999


Q ss_pred             CCChhhhhhccHHHHhcC-CCCcEEEEcCCCchh
Q 015895          245 VLDKTTYHLINKERLATM-KKEAILVNCSRGPVI  277 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~m-k~gailIN~aRG~~v  277 (398)
                      |... ..     +.+..+ +++.++||++-+...
T Consensus        67 ~~~~-~~-----~v~~~l~~~~~ivi~~s~~~~~   94 (276)
T 2i76_A           67 PDRY-IK-----TVANHLNLGDAVLVHCSGFLSS   94 (276)
T ss_dssp             CTTT-HH-----HHHTTTCCSSCCEEECCSSSCG
T ss_pred             ChHH-HH-----HHHHHhccCCCEEEECCCCCcH
Confidence            9642 23     333444 688999999865433

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.86  E-value=0.00013  Score=62.84  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=62.5

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcCCCCccccccCC---HHHH-
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASS---MDEV-  233 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s---l~el-  233 (398)
                      +.....+++|.|+|+|.+|+.+|+.| +..|.+|+++|+++... +.        +. ..+.... .....+   +.+. 
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L-~~~g~~V~vid~~~~~~-~~--------~~~~~g~~~~-~~d~~~~~~l~~~~   81 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLA-SSSGHSVVVVDKNEYAF-HR--------LNSEFSGFTV-VGDAAEFETLKECG   81 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGG-GG--------SCTTCCSEEE-ESCTTSHHHHHTTT
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HH--------HHhcCCCcEE-EecCCCHHHHHHcC
Confidence            34567889999999999999999998 68899999999986542 11        11 1111100 001112   2222 


Q ss_pred             hhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       234 l~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +..+|+|++++|....+..  -......+.+...+|-..++.
T Consensus        82 ~~~ad~Vi~~~~~~~~~~~--~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           82 MEKADMVFAFTNDDSTNFF--ISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GGGCSEEEECSSCHHHHHH--HHHHHHHTSCCSEEEEECSSG
T ss_pred             cccCCEEEEEeCCcHHHHH--HHHHHHHHCCCCeEEEEECCH
Confidence            5789999999996332222  233444455566666666654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.78  E-value=7.4e-05  Score=63.36  Aligned_cols=95  Identities=14%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV~  241 (398)
                      .++.|+|+|.+|+.+|+.| +..|.+|+++|+++... +.        ++..+... ......+   +.++ +.++|+|+
T Consensus         8 ~~viIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~-~~--------~~~~g~~~-i~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKL-LASDIPLVVIETSRTRV-DE--------LRERGVRA-VLGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHH-HH--------HHHTTCEE-EESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCEEEECcCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HH--------HHHcCCCE-EECCCCCHHHHHhcCcccCCEEE
Confidence            4799999999999999998 68999999999987642 21        11122111 0111122   2222 46899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +++|...++..++  ..+..+.++..+|--++
T Consensus        77 ~~~~~~~~n~~~~--~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           77 LTIPNGYEAGEIV--ASARAKNPDIEIIARAH  106 (140)
T ss_dssp             ECCSCHHHHHHHH--HHHHHHCSSSEEEEEES
T ss_pred             EECCChHHHHHHH--HHHHHHCCCCeEEEEEC
Confidence            9999755554333  34555666667765444

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.77  E-value=8.4e-05  Score=73.98  Aligned_cols=131  Identities=15%  Similarity=0.221  Sum_probs=90.9

Q ss_pred             CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 015895          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (398)
Q Consensus       109 gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f  188 (398)
                      .|.+.|+-   -..+|=.+++.++...|                     ..|..+.+.+|.|+|.|.+|..+|+.+ .+.
T Consensus       160 ~Ipvf~DD---iqGTasV~lAal~~A~~---------------------i~g~~l~~~kVVv~GAGaAG~~iAkll-~~~  214 (388)
T 1vl6_A          160 NIPVFHDD---QQGTAVVVSAAFLNALK---------------------LTEKKIEEVKVVVNGIGAAGYNIVKFL-LDL  214 (388)
T ss_dssp             SSCEEEHH---HHHHHHHHHHHHHHHHH---------------------HHTCCTTTCEEEEECCSHHHHHHHHHH-HHH
T ss_pred             Ccceeccc---cccHHHHHHHHHHHHHH---------------------HhCCCCCCcEEEEECCCHHHHHHHHHH-HhC
Confidence            68888842   23344444555544444                     123468999999999999999999997 688


Q ss_pred             Cc-EEEEEcCC----hhhH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHh
Q 015895          189 KM-NLIYYDLY----QATR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (398)
Q Consensus       189 G~-~V~~~d~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~  260 (398)
                      |. +|+.+|++    ....   +..+.+.|...   ..  .  .....+|+|.++.+|+++-+.-     .++|.++.++
T Consensus       215 G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~---~~--~--~~~~~~L~eav~~ADVlIG~Sa-----p~l~t~emVk  282 (388)
T 1vl6_A          215 GVKNVVAVDRKGILNENDPETCLNEYHLEIARI---TN--P--ERLSGDLETALEGADFFIGVSR-----GNILKPEWIK  282 (388)
T ss_dssp             TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT---SC--T--TCCCSCHHHHHTTCSEEEECSC-----SSCSCHHHHT
T ss_pred             CCCeEEEEECCCcccCCCcccccCHHHHHHHHh---hh--c--cCchhhHHHHHccCCEEEEeCC-----CCccCHHHHH
Confidence            98 89999998    3221   22222222211   11  1  1123579999999999987742     3899999999


Q ss_pred             cCCCCcEEEEcCCCch
Q 015895          261 TMKKEAILVNCSRGPV  276 (398)
Q Consensus       261 ~mk~gailIN~aRG~~  276 (398)
                      .|+++++++.+|+...
T Consensus       283 ~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          283 KMSRKPVIFALANPVP  298 (388)
T ss_dssp             TSCSSCEEEECCSSSC
T ss_pred             hcCCCCEEEEcCCCCC
Confidence            9999999999998653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.74  E-value=8e-05  Score=72.07  Aligned_cols=120  Identities=16%  Similarity=0.126  Sum_probs=76.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh--cCCCCc-cccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPV-TWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~sl~ell~~aDiV~l  242 (398)
                      ++|+|||.|.||..+|..|+ ..|.+|.+|+|.......+.    +-....  .+.... ......+++++.+.+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~~~i~~~----Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLA-KTGHCVSVVSRSDYETVKAK----GIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HTTCEEEEECSTTHHHHHHH----CEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCChHHHHHhC----CcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            58999999999999999984 67899999999753222110    000000  111000 01122466776668999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      ++|.. .+...+ ++.-..++++.++|.+.-| +-.++.|.+.+...++.+
T Consensus        78 avK~~-~~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl~  125 (320)
T 3i83_A           78 CIKVV-EGADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVIS  125 (320)
T ss_dssp             CCCCC-TTCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEEE
T ss_pred             ecCCC-ChHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEEE
Confidence            99964 445444 3445567889999998876 333566777776555443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.73  E-value=0.0001  Score=71.76  Aligned_cols=94  Identities=15%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..++++|||.|.+|+.+++.++...+ -+|.+|||++... +.+.+.+.    ..+   .... +.++++++ ++|+|++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a-~~la~~~~----~~~---~~~~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSYCE----DRG---ISAS-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHH----HTT---CCEE-ECCHHHHT-SSSEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHHH----hcC---ceEE-ECCHHHHh-CCCEEEE
Confidence            45789999999999999998754343 5899999987542 33322221    111   1123 56899999 9999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ++|..   ..++..   +.+++|..+++++.
T Consensus       194 aTp~~---~pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          194 TTPSR---KPVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             CCCCS---SCCBCG---GGCCTTCEEEECSC
T ss_pred             eeCCC---CceecH---HHcCCCeEEEECCC
Confidence            99963   344542   46889999999853

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.72  E-value=0.00012  Score=59.03  Aligned_cols=95  Identities=17%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc--ccccCCHHHHhhcCCEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVI  240 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sl~ell~~aDiV  240 (398)
                      .+++|+|+|.|.||+.+++.| ...| .+|+++|+++.... ..        ...+.....  .....++.++++.+|+|
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l-~~~g~~~v~~~~r~~~~~~-~~--------~~~~~~~~~~d~~~~~~~~~~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALL-KTSSNYSVTVADHDLAALA-VL--------NRMGVATKQVDAKDEAGLAKALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHH-HHCSSEEEEEEESCHHHHH-HH--------HTTTCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHH-HhCCCceEEEEeCCHHHHH-HH--------HhCCCcEEEecCCCHHHHHHHHcCCCEE
Confidence            457899999999999999998 5788 89999999875421 11        111110000  11113466778899999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +.++|.. .+..++.    ...+.|...++.+.
T Consensus        74 i~~~~~~-~~~~~~~----~~~~~g~~~~~~~~  101 (118)
T 3ic5_A           74 ISAAPFF-LTPIIAK----AAKAAGAHYFDLTE  101 (118)
T ss_dssp             EECSCGG-GHHHHHH----HHHHTTCEEECCCS
T ss_pred             EECCCch-hhHHHHH----HHHHhCCCEEEecC
Confidence            9999843 2222221    12356777887753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.70  E-value=3.6e-05  Score=75.05  Aligned_cols=122  Identities=12%  Similarity=0.108  Sum_probs=74.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .++|+|||.|.||..+|..| ...|.+|.+|++..  ..+...+ .+-..... +..........++++ ++.+|+|+++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L-~~~g~~V~~~~r~~--~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARL-ALAGEAINVLARGA--TLQALQT-AGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHH-HHTTCCEEEECCHH--HHHHHHH-TCEEEEETTEEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEChH--HHHHHHH-CCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            36899999999999999998 46788999999842  2222111 00000000 000001112246776 5899999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCc------------------hhcHHHHHHHHhcCCccE
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP------------------VIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~------------------~vde~aL~~aL~~g~i~g  293 (398)
                      +|. .+++.++. +....+++++++|.+.-|=                  +-.++.+.+.+...++.+
T Consensus        78 vk~-~~~~~~~~-~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~  143 (335)
T 3ghy_A           78 VKA-PALESVAA-GIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLG  143 (335)
T ss_dssp             CCH-HHHHHHHG-GGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEE
T ss_pred             CCc-hhHHHHHH-HHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEE
Confidence            995 45555442 2334567899999998882                  223445777776555443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.69  E-value=0.00012  Score=72.98  Aligned_cols=103  Identities=13%  Similarity=0.025  Sum_probs=62.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEc---CChhhHHHHHHhhhhhhhh--hcCC--C--Ccccc-ccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD---LYQATRLEKFVTAYGQFLK--ANGE--Q--PVTWK-RASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d---~~~~~~~~~~~~~~~~~~~--~~~~--~--~~~~~-~~~sl~ell~  235 (398)
                      ++|+|||.|.||..+|..|++.-|.+|.+||   ++... .+......+-.+.  ..+.  .  ..... ...++++.++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   81 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAER-WTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS   81 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHH-HHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHH-HHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence            4899999999999999998422489999999   54322 1211110000000  0000  0  00011 2357888889


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      .||+|++++|.. ..+.++ ++....+++++++|+.
T Consensus        82 ~aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           82 GADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999953 345444 3444567889999985

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.69  E-value=5.9e-05  Score=71.81  Aligned_cols=106  Identities=16%  Similarity=0.017  Sum_probs=67.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      |+++.|||.|.+|+.++..| ...|.+|.+++|+.++.. .+. .+       +.   ..   .+++++ +++|+|+.++
T Consensus       118 ~k~vlvlGaGGaaraia~~L-~~~G~~v~V~nRt~~ka~-~la-~~-------~~---~~---~~~~~l-~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACEL-KKQGLQVSVLNRSSRGLD-FFQ-RL-------GC---DC---FMEPPK-SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCTTHH-HHH-HH-------TC---EE---ESSCCS-SCCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHH-HC-------CC---eE---ecHHHh-ccCCEEEEcc
Confidence            88999999999999999998 578899999999876532 211 11       11   01   122332 3899999999


Q ss_pred             CCChhhhhhccHHHHh-cCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          245 VLDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       245 Plt~~T~~li~~~~~~-~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      |..-.....++.+.+. .++++.+++|+...+  .+.-+.+|-+.|
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P--~T~ll~~A~~~G  224 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGKLAYDLAYGF--LTPFLSLAKELK  224 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS--CCHHHHHHHHTT
T ss_pred             cCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC--chHHHHHHHHCc
Confidence            9753222235544332 456777777777765  444333343333

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.65  E-value=0.00011  Score=71.03  Aligned_cols=117  Identities=18%  Similarity=0.270  Sum_probs=70.9

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      -..++|+|||.|.||..+|..|+ ..|.+|..| ++... .+...+. +-.....+ ..........++++ ++.+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~-~~G~~V~l~-~~~~~-~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLA-RAGHEVILI-ARPQH-VQAIEAT-GLRLETQSFDEQVKVSASSDPSA-VQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHH-HTTCEEEEE-CCHHH-HHHHHHH-CEEEECSSCEEEECCEEESCGGG-GTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHH-HCCCeEEEE-EcHhH-HHHHHhC-CeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEE
Confidence            44578999999999999999984 678999999 65532 2221110 00000000 00001111245554 58999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      +++|.. +++.++ ++....+++++++|.+.-|= -.++.+.+.+.
T Consensus        92 lavk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~  134 (318)
T 3hwr_A           92 FCVKST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE  134 (318)
T ss_dssp             ECCCGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred             EEcccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence            999964 566555 34455678999999997763 22356666664

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.63  E-value=0.0002  Score=72.17  Aligned_cols=99  Identities=21%  Similarity=0.286  Sum_probs=70.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh-H-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      -|+||||+|||+|.=|.+=|..| +..|.+|++=-|..+. + ...+     ......|     +. +.+.+|++++||+
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNL-RDSGv~V~Vglr~~s~~e~~~S~-----~~A~~~G-----f~-v~~~~eA~~~ADv  101 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASW-----RKATENG-----FK-VGTYEELIPQADL  101 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHH-HHTTCEEEEEECHHHHHTTCHHH-----HHHHHTT-----CE-EEEHHHHGGGCSE
T ss_pred             HHcCCEEEEeCCChHhHHHHhHH-HhcCCcEEEEeCCCCcccccchH-----HHHHHCC-----CE-ecCHHHHHHhCCE
Confidence            48999999999999999999998 7889998876442210 0 0000     0011122     32 3579999999999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      |.+.+|...+ ..+. ++....||+|+.|. .|+|=
T Consensus       102 V~~L~PD~~q-~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          102 VINLTPDKQH-SDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             EEECSCGGGH-HHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             EEEeCChhhH-HHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            9999996433 3444 56999999999887 67774

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.63  E-value=0.00035  Score=67.30  Aligned_cols=120  Identities=12%  Similarity=0.130  Sum_probs=74.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCc-cccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV-TWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||.|.||..+|..|+ ..|.+|.+|+|.......+    .+-..... +.... ......+.++ ++.+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~~~i~~----~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQ-RSGEDVHFLLRRDYEAIAG----NGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHH-HTSCCEEEECSTTHHHHHH----TCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEEcCcHHHHHh----CCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEe
Confidence            57999999999999999984 6788999999875221111    00000000 10000 0111245555 5799999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEE
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA  294 (398)
                      +|.. .++..+ ++.-..+++++++|.+.-| +-.++.|.+.+...++.++
T Consensus        77 vk~~-~~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           77 LKTF-ANSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             CCGG-GGGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             cCCC-CcHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            9953 445544 3444567899999999876 2235667777766555444

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.62  E-value=4e-05  Score=76.61  Aligned_cols=83  Identities=29%  Similarity=0.462  Sum_probs=68.2

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ..-+|.|||. |+.|+..++.+ +++|+   .|.++|.+....               +.         .+++ +.++|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a-~~lGa~~~~V~v~D~~~~~~---------------g~---------~~~~-i~~aDi  266 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLL-HKVGIPDANILKWDIKETSR---------------GG---------PFDE-IPQADI  266 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHH-HHTTCCGGGEEEECHHHHTT---------------CS---------CCTH-HHHSSE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHH-HhCCCCcCceEEeecccccc---------------CC---------chhh-HhhCCE
Confidence            3567999999 99999999986 89998   899999865211               10         1233 569999


Q ss_pred             EEEccCCChhhhhhccHHHHhcC-CCCcEEEEcC
Q 015895          240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~m-k~gailIN~a  272 (398)
                      |+.++......-.+|.++.++.| |+|+++||+|
T Consensus       267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            99999987777789999999999 9999999996

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.62  E-value=0.00028  Score=71.64  Aligned_cols=146  Identities=16%  Similarity=0.136  Sum_probs=83.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh----h----hhhhh---hcCCCCccccccCCHHH
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----Y----GQFLK---ANGEQPVTWKRASSMDE  232 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~----~----~~~~~---~~~~~~~~~~~~~sl~e  232 (398)
                      +-++|+|||+|-+|..+|..++ ..|.+|++||.+.... +.+...    +    ...+.   ..+    ......+.++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A-~~G~~V~g~Did~~kV-~~ln~G~~pi~Epgl~ell~~~~~~g----~l~~tt~~~~   93 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFA-LLGHRVVGYDVNPSIV-ERLRAGRPHIYEPGLEEALGRALSSG----RLSFAESAEE   93 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHHHTT----CEEECSSHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHH-hCCCcEEEEECCHHHH-HHHHCCCCCCCCCCHHHHHHHHHHcC----CeeEEcCHHH
Confidence            3468999999999999999884 6799999999987542 221110    0    00000   011    0112357888


Q ss_pred             HhhcCCEEEEccCCChh------hhhhcc--HHHHhcC---CCCcEEEEcCCCchhcHHHHHH-HHhcCCccEEEecc-C
Q 015895          233 VLREADVISLHPVLDKT------TYHLIN--KERLATM---KKEAILVNCSRGPVIDEVALVE-HLKQNPMFRVGLDV-F  299 (398)
Q Consensus       233 ll~~aDiV~l~~Plt~~------T~~li~--~~~~~~m---k~gailIN~aRG~~vde~aL~~-aL~~g~i~gAalDV-~  299 (398)
                      .++.||++++|+|....      ...+..  +..-..+   .+|.++|.-|+-.+--.+.+.. .+.+. -.+.-.+| |
T Consensus        94 ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~-~~~~~f~v~~  172 (444)
T 3vtf_A           94 AVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEE-AGGVKFSVAS  172 (444)
T ss_dssp             HHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTT-TTTCCCEEEE
T ss_pred             HHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHh-CCCCCceeec
Confidence            89999999999984211      112221  1222334   4688999999976655555443 33332 12222222 4


Q ss_pred             CCCCCCC-C---CCCCCCceE
Q 015895          300 EDEPYMK-P---GLSEMKNAI  316 (398)
Q Consensus       300 ~~EP~~~-~---~L~~~~nvi  316 (398)
                      .+|-+.. +   .+...++|+
T Consensus       173 ~PErl~eG~a~~d~~~~~riV  193 (444)
T 3vtf_A          173 NPEFLREGSALEDFFKPDRIV  193 (444)
T ss_dssp             CCCCCCTTSHHHHHHSCSCEE
T ss_pred             CcccccCCccccccccCCcEE
Confidence            5664421 1   345556665

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.61  E-value=0.00026  Score=59.54  Aligned_cols=95  Identities=14%  Similarity=0.112  Sum_probs=56.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhcCCE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADV  239 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el----l~~aDi  239 (398)
                      .++++.|+|+|.+|+.+|+.| ...|.+|+++|+++... +.        +...+.. .......+.+.+    +.++|+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L-~~~g~~V~~id~~~~~~-~~--------~~~~~~~-~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVREL-TAAGKKVLAVDKSKEKI-EL--------LEDEGFD-AVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHH-HH--------HHHTTCE-EEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HH--------HHHCCCc-EEECCCCCHHHHHhCCcccCCE
Confidence            457899999999999999998 67899999999987542 21        1111211 001112232222    468999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      |++++|. .+ ..+.-......+....++.-+
T Consensus        74 vi~~~~~-~~-~n~~~~~~a~~~~~~~iia~~  103 (141)
T 3llv_A           74 VLITGSD-DE-FNLKILKALRSVSDVYAIVRV  103 (141)
T ss_dssp             EEECCSC-HH-HHHHHHHHHHHHCCCCEEEEE
T ss_pred             EEEecCC-HH-HHHHHHHHHHHhCCceEEEEE
Confidence            9999994 22 333333444445533344433

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.60  E-value=0.00016  Score=69.41  Aligned_cols=108  Identities=18%  Similarity=0.290  Sum_probs=68.1

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .++||||+|.||+. .++.+++.-+.+++ ++|+++... +.+.+.+       +     ...+.+++++++++|+|+++
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------~-----~~~~~~~~~ll~~~D~V~i~   73 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKR-EKICSDY-------R-----IMPFDSIESLAKKCDCIFLH   73 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHH-HHHHHHH-------T-----CCBCSCHHHHHTTCSEEEEC
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------C-----CCCcCCHHHHHhcCCEEEEe
Confidence            58999999999996 88877433467877 789887542 2222221       2     11257899999999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCc-EEEE-cCCCchhcHHHHHHHHhcCCc
Q 015895          244 PVLDKTTYHLINKERLATMKKEA-ILVN-CSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~ga-ilIN-~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +|.......     ....++.|. +++. ..--.+-+.++|.++.++..+
T Consensus        74 tp~~~h~~~-----~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~  118 (308)
T 3uuw_A           74 SSTETHYEI-----IKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNL  118 (308)
T ss_dssp             CCGGGHHHH-----HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred             CCcHhHHHH-----HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            995432221     122233443 4443 233455666778887776543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.57  E-value=0.00037  Score=58.03  Aligned_cols=100  Identities=11%  Similarity=0.177  Sum_probs=59.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH---HH-hhcCC
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREAD  238 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~---el-l~~aD  238 (398)
                      +.++++.|+|+|.+|+.+++.| ...|++|+++|++.... +.        +...+.. .......+.+   ++ +.++|
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l-~~~g~~v~~~d~~~~~~-~~--------~~~~~~~-~~~~d~~~~~~l~~~~~~~~d   72 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NA--------YASYATH-AVIANATEENELLSLGIRNFE   72 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HT--------TTTTCSE-EEECCTTCHHHHHTTTGGGCS
T ss_pred             CcCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHhCCE-EEEeCCCCHHHHHhcCCCCCC
Confidence            5678899999999999999998 67899999999876432 11        1111110 0000112222   32 57899


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +|++++|...++. +.-......+.+. .+|-.+.+.
T Consensus        73 ~vi~~~~~~~~~~-~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           73 YVIVAIGANIQAS-TLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             EEEECCCSCHHHH-HHHHHHHHHTTCS-EEEEECCSH
T ss_pred             EEEECCCCchHHH-HHHHHHHHHcCCC-eEEEEeCCH
Confidence            9999998642322 2223444556666 555555543

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.54  E-value=0.00045  Score=67.21  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=65.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      .+|||||+|.||+..++.+++.-+.+++ ++|+++... +.+.+.       .+     ...+.+++++++  ++|+|++
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~-------~g-----~~~~~~~~~~l~~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGA-QRLAEA-------NG-----AEAVASPDEVFARDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHT-------TT-----CEEESSHHHHTTCSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHH-------cC-----CceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999988433378876 689887542 221111       12     233578999998  8999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhcCCc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~i  291 (398)
                      ++|........  ...+   +.|. +++.- ---.+-+.++|.++.++..+
T Consensus        72 ~tp~~~h~~~~--~~al---~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~  117 (344)
T 3euw_A           72 GSPTSTHVDLI--TRAV---ERGIPALCEKPIDLDIEMVRACKEKIGDGAS  117 (344)
T ss_dssp             CSCGGGHHHHH--HHHH---HTTCCEEECSCSCSCHHHHHHHHHHHGGGGG
T ss_pred             eCCchhhHHHH--HHHH---HcCCcEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            99954332221  2222   2232 33332 12334455556666665443

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.51  E-value=0.00043  Score=66.99  Aligned_cols=107  Identities=18%  Similarity=0.244  Sum_probs=64.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      .+|||||+|.||+..++.+.+.-+.+++ ++|+++... +.+.+.       .+     .. +.+++++++  ++|+|++
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~-------~~-----~~-~~~~~~~l~~~~~D~V~i   69 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAA-EAIAGA-------YG-----CE-VRTIDAIEAAADIDAVVI   69 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHH-------TT-----CE-ECCHHHHHHCTTCCEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHH-HHHHHH-------hC-----CC-cCCHHHHhcCCCCCEEEE
Confidence            4799999999999999988433478877 689887542 222111       12     22 478999998  8999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCc-EEEE-cCCCchhcHHHHHHHHhcCCc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEA-ILVN-CSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~ga-ilIN-~aRG~~vde~aL~~aL~~g~i  291 (398)
                      ++|........  ...   ++.|. +++. .---.+-+.++|.++.++..+
T Consensus        70 ~tp~~~h~~~~--~~a---l~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~  115 (331)
T 4hkt_A           70 CTPTDTHADLI--ERF---ARAGKAIFCEKPIDLDAERVRACLKVVSDTKA  115 (331)
T ss_dssp             CSCGGGHHHHH--HHH---HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred             eCCchhHHHHH--HHH---HHcCCcEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence            99954332221  222   23333 3332 222334455556666665443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.50  E-value=0.00018  Score=68.21  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=50.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aDiV  240 (398)
                      ++.|++++|+|.|.+|+.+|..| ...|.+|.+++|+.... +.+.+.+.    ..+  .  .. ..+++++.+ ++|+|
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L-~~~G~~v~v~~R~~~~a-~~l~~~~~----~~~--~--~~-~~~~~~~~~~~~Div  184 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPL-LQAQQNIVLANRTFSKT-KELAERFQ----PYG--N--IQ-AVSMDSIPLQTYDLV  184 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHH-HHTTCEEEEEESSHHHH-HHHHHHHG----GGS--C--EE-EEEGGGCCCSCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHHHcc----ccC--C--eE-EeeHHHhccCCCCEE
Confidence            57899999999999999999998 57889999999987542 22222211    000  0  10 123344333 89999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      +.++|..
T Consensus       185 In~t~~~  191 (272)
T 1p77_A          185 INATSAG  191 (272)
T ss_dssp             EECCCC-
T ss_pred             EECCCCC
Confidence            9999964

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.47  E-value=0.00019  Score=68.59  Aligned_cols=100  Identities=19%  Similarity=0.201  Sum_probs=62.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+.... +.+.+.+.    ..+  .  . ...+++++.+++|+
T Consensus       122 ~~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a-~~la~~~~----~~~--~--~-~~~~~~~l~~~aDi  190 (281)
T 3o8q_A          122 VLLKGATILLIGAGGAARGVLKPL-LDQQPASITVTNRTFAKA-EQLAELVA----AYG--E--V-KAQAFEQLKQSYDV  190 (281)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HTTCCSEEEEEESSHHHH-HHHHHHHG----GGS--C--E-EEEEGGGCCSCEEE
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HhcCCCeEEEEECCHHHH-HHHHHHhh----ccC--C--e-eEeeHHHhcCCCCE
Confidence            368999999999999999999998 57896 999999987542 22222211    111  0  1 11245555578999


Q ss_pred             EEEccCCChhhh-hhccHHHHhcCCCCcEEEEcCCC
Q 015895          240 ISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       240 V~l~~Plt~~T~-~li~~~~~~~mk~gailIN~aRG  274 (398)
                      |+.++|..-... ..+.   .+.++++.+++|+.-.
T Consensus       191 IInaTp~gm~~~~~~l~---~~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          191 IINSTSASLDGELPAID---PVIFSSRSVCYDMMYG  223 (281)
T ss_dssp             EEECSCCCC----CSCC---GGGEEEEEEEEESCCC
T ss_pred             EEEcCcCCCCCCCCCCC---HHHhCcCCEEEEecCC
Confidence            999999753211 1122   1234556666666544

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.47  E-value=0.00055  Score=66.22  Aligned_cols=118  Identities=12%  Similarity=0.180  Sum_probs=67.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .++|+|||.|.||..+|..++ ..|. +|..||+..........+.. ....... .........++ +.++.||+|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la-~~g~~~V~l~D~~~~~~~~~~~~l~-~~~~~~~-~~~~i~~t~d~-~a~~~aDiVi~a   79 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVG-KDNLADVVLFDIAEGIPQGKALDIT-HSMVMFG-STSKVIGTDDY-ADISGSDVVIIT   79 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHHHH-HHHHHHT-CCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCCchHHHHHHHHHH-hhhhhcC-CCcEEEECCCH-HHhCCCCEEEEe
Confidence            468999999999999999985 4576 89999998643211111100 0000000 01112222456 678999999999


Q ss_pred             cCCCh-----------hhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895          244 PVLDK-----------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (398)
Q Consensus       244 ~Plt~-----------~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL  286 (398)
                      ++...           ++..++-  -+.+....+++++|+++-..-+....+.+..
T Consensus        80 vg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           80 ASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             CCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            84211           1112111  1122333569999999876555555555544

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.42  E-value=0.00052  Score=64.93  Aligned_cols=99  Identities=16%  Similarity=0.151  Sum_probs=62.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV  240 (398)
                      ++.|+++.|+|.|.+|+.+|+.| ...|.+|++++|+.... +.+.+.++    ..+  .  . ...+++++. ..+|+|
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L-~~~G~~V~v~~R~~~~~-~~la~~~~----~~~--~--~-~~~~~~~~~~~~~Div  184 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLFA----HTG--S--I-QALSMDELEGHEFDLI  184 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHTG----GGS--S--E-EECCSGGGTTCCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEECCHHHH-HHHHHHhh----ccC--C--e-eEecHHHhccCCCCEE
Confidence            57899999999999999999998 57889999999987542 22222111    000  0  1 012333433 589999


Q ss_pred             EEccCCChhhhhh--ccHHHHhcCCCCcEEEEcCCCc
Q 015895          241 SLHPVLDKTTYHL--INKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       241 ~l~~Plt~~T~~l--i~~~~~~~mk~gailIN~aRG~  275 (398)
                      +.++|.... ..+  +..   ..++++.+++|+....
T Consensus       185 Vn~t~~~~~-~~~~~i~~---~~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          185 INATSSGIS-GDIPAIPS---SLIHPGIYCYDMFYQK  217 (271)
T ss_dssp             EECCSCGGG-TCCCCCCG---GGCCTTCEEEESCCCS
T ss_pred             EECCCCCCC-CCCCCCCH---HHcCCCCEEEEeccCC
Confidence            999996432 111  221   2246677777776653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.42  E-value=0.00039  Score=69.31  Aligned_cols=190  Identities=16%  Similarity=0.189  Sum_probs=117.1

Q ss_pred             CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 015895          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (398)
Q Consensus       109 gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f  188 (398)
                      .|++.|+   --..+|=-+++-++...|                     ..|..+...+|.|+|.|..|..+|+.+ .++
T Consensus       156 ~ipvf~D---DiqGTa~V~lAall~al~---------------------l~g~~l~d~kVVi~GAGaAG~~iA~ll-~~~  210 (398)
T 2a9f_A          156 HIPVFHD---DQHGTAIVVLAAIFNSLK---------------------LLKKSLDEVSIVVNGGGSAGLSITRKL-LAA  210 (398)
T ss_dssp             SSCEEEH---HHHHHHHHHHHHHHHHHH---------------------TTTCCTTSCEEEEECCSHHHHHHHHHH-HHH
T ss_pred             Ccceecc---hhhhHHHHHHHHHHHHHH---------------------HhCCCCCccEEEEECCCHHHHHHHHHH-HHc
Confidence            5999994   234556666776766666                     134578999999999999999999997 688


Q ss_pred             Cc-EEEEEcCCh-----h-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhc
Q 015895          189 KM-NLIYYDLYQ-----A-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (398)
Q Consensus       189 G~-~V~~~d~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~  261 (398)
                      |. +|+.+|+..     . ..+..+.+.|.....     .  .....+|+|.++.+|+++-.-     +.+++.++.++.
T Consensus       211 Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~-----~--~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~  278 (398)
T 2a9f_A          211 GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN-----R--EFKSGTLEDALEGADIFIGVS-----APGVLKAEWISK  278 (398)
T ss_dssp             TCCEEEEEETTEECCTTCCCSCCC---CHHHHHS-----C--TTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHT
T ss_pred             CCCeEEEEECCCcccCCccccchHHHHHHhhccC-----c--ccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHh
Confidence            99 999999873     0 111111112211100     0  111347999999999988662     368999999999


Q ss_pred             CCCCcEEEEcCCCchhcHHHHHHHHhcCC-ccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHH-----HHHHHH
Q 015895          262 MKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR-----EGMATL  335 (398)
Q Consensus       262 mk~gailIN~aRG~~vde~aL~~aL~~g~-i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~-----~~~~~~  335 (398)
                      |+++++++.+|+...  |-.=.++.+.|+ |.+-+   -...|      -+-.|+++-|=++-....++     +.|-..
T Consensus       279 Ma~~pIIfalsNPt~--E~~pe~a~~~g~~i~atG---rs~~p------~Q~NN~~~FPgi~~Gal~~~a~~I~d~m~~a  347 (398)
T 2a9f_A          279 MAARPVIFAMANPIP--EIYPDEALEAGAYIVGTG---RSDFP------NQINNVLAFPGIFRGALDARAKTITVEMQIA  347 (398)
T ss_dssp             SCSSCEEEECCSSSC--SSCHHHHHTTTCSEEEES---CTTSS------SBCCGGGTHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             hCCCCEEEECCCCCc--cCCHHHHHHhCCeEEEeC---CCCCC------CcCCceeEcchHHHHHHHcCCcCCCHHHHHH
Confidence            999999999999653  222223333355 33333   12222      23457777776543221111     344445


Q ss_pred             HHHHHHHHHcC
Q 015895          336 AALNVLGKIKG  346 (398)
Q Consensus       336 ~~~ni~~~l~g  346 (398)
                      +++.|.....-
T Consensus       348 Aa~alA~~~~~  358 (398)
T 2a9f_A          348 AAKGIASLVPD  358 (398)
T ss_dssp             HHHHHHHTCSS
T ss_pred             HHHHHHhcCCc
Confidence            55555554433

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.41  E-value=0.00062  Score=65.73  Aligned_cols=124  Identities=16%  Similarity=0.219  Sum_probs=69.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|..+|..++.. +|.+|..||+..... +.....+........ .........++++ ++.||+|++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~t~d~~~-l~~aDvViiav   77 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIP-QGKALDMYESGPVGL-FDTKVTGSNDYAD-TANSDIVIITA   77 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCEEEEESCGGG-GTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHH-HHHHHhHHhhhhccc-CCcEEEECCCHHH-HCCCCEEEEeC
Confidence            4799999999999999988643 689999999986432 211100000000000 1111222246666 89999999999


Q ss_pred             CCChhhh-----hhc--c----H---HHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEEE
Q 015895          245 VLDKTTY-----HLI--N----K---ERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRVG  295 (398)
Q Consensus       245 Plt~~T~-----~li--~----~---~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gAa  295 (398)
                      |.. ...     .++  |    +   +.+....+++++|+++-  .+|.-+  +.+.  +...++.|.+
T Consensus        78 ~~p-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN--P~~~~~~~~~~~~~~~~~rviG~g  143 (310)
T 1guz_A           78 GLP-RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIMTHVAWVRSGLPKERVIGMA  143 (310)
T ss_dssp             SCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHHHHHHHHHHCSCGGGEEEEC
T ss_pred             CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC--chHHHHHHHHHhcCCChHHEEECC
Confidence            743 211     121  1    1   12222357889998844  444432  2222  3344566653

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.39  E-value=0.00065  Score=65.33  Aligned_cols=109  Identities=15%  Similarity=0.174  Sum_probs=68.1

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|||||+|.||+. +++.+++.-+++++ ++|+++... +.+.+.+       +.     ....+++++..++|+|+++
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~~~~~-------g~-----~~~~~~~~l~~~~D~V~i~   72 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW-------RI-----PYADSLSSLAASCDAVFVH   72 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH-------TC-----CBCSSHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------CC-----CccCcHHHhhcCCCEEEEe
Confidence            47999999999997 88877433477876 889887542 2211111       21     1235777776789999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhcCCcc
Q 015895          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~i~  292 (398)
                      +|......     -....++.|. +++.- .--.+-+.++|.++.++..+.
T Consensus        73 tp~~~h~~-----~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           73 SSTASHFD-----VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             SCTTHHHH-----HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCchhHHH-----HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            99533222     1223345565 55542 333455667788888776544

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.39  E-value=0.00046  Score=65.64  Aligned_cols=75  Identities=12%  Similarity=0.064  Sum_probs=51.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCC
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READ  238 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aD  238 (398)
                      .++.||++.|+|.|.+|+.++..| ...|. +|.+++|+.... +.+.+.+       +.....   ..+++++- .++|
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~-------~~~~~~---~~~~~~l~~~~~D  183 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPF-LQAGPSELVIANRDMAKA-LALRNEL-------DHSRLR---ISRYEALEGQSFD  183 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTCCSEEEEECSCHHHH-HHHHHHH-------CCTTEE---EECSGGGTTCCCS
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHh-------ccCCee---EeeHHHhcccCCC
Confidence            468999999999999999999998 57896 999999987542 2222221       100011   12333432 7899


Q ss_pred             EEEEccCCC
Q 015895          239 VISLHPVLD  247 (398)
Q Consensus       239 iV~l~~Plt  247 (398)
                      +|+.++|..
T Consensus       184 ivInaTp~g  192 (272)
T 3pwz_A          184 IVVNATSAS  192 (272)
T ss_dssp             EEEECSSGG
T ss_pred             EEEECCCCC
Confidence            999999953

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.39  E-value=0.00077  Score=65.37  Aligned_cols=110  Identities=15%  Similarity=0.120  Sum_probs=66.9

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~  241 (398)
                      .+|||||+|.||+..++.++ +.-++++ .++|+++... +.+.+.       .+..    ..+.+++++++  ++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~-~~~a~~-------~g~~----~~~~~~~~~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQL-EWAKNE-------LGVE----TTYTNYKDMIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHH-HHHHHT-------TCCS----EEESCHHHHHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHH-HHHHHH-------hCCC----cccCCHHHHhcCCCCCEEE
Confidence            48999999999999999874 2347875 5689887542 221111       1210    22468999986  699999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcE-EEEc-CCCchhcHHHHHHHHhcC-Ccc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAI-LVNC-SRGPVIDEVALVEHLKQN-PMF  292 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gai-lIN~-aRG~~vde~aL~~aL~~g-~i~  292 (398)
                      +++|.....     +-....++.|.. ++.- .--.+-+.++|.++.++. .+.
T Consensus        77 i~tp~~~h~-----~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           77 IVAPTPFHP-----EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ECSCGGGHH-----HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             EeCChHhHH-----HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence            999953221     122333455653 3431 122344555688887766 543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.36  E-value=0.00048  Score=66.20  Aligned_cols=106  Identities=17%  Similarity=0.147  Sum_probs=65.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      .+|||||+|.||+..++.+++.-+.++ .++|+++... +.        +   ...   ...+.+++++++  ++|+|++
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~-~~--------~---~~~---~~~~~~~~~~l~~~~~D~V~i   75 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNL-AL--------V---PPG---CVIESDWRSVVSAPEVEAVII   75 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHH-TT--------C---CTT---CEEESSTHHHHTCTTCCEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HH--------H---Hhh---CcccCCHHHHhhCCCCCEEEE
Confidence            479999999999999998843236775 4889876532 11        0   000   123468899985  7999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCc-EEEE-cCCCchhcHHHHHHHHhcCCc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEA-ILVN-CSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~ga-ilIN-~aRG~~vde~aL~~aL~~g~i  291 (398)
                      ++|..... .    -....++.|. +++. ..--.+-+.++|.++.++..+
T Consensus        76 ~tp~~~h~-~----~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~  121 (315)
T 3c1a_A           76 ATPPATHA-E----ITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV  121 (315)
T ss_dssp             ESCGGGHH-H----HHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC
T ss_pred             eCChHHHH-H----HHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCC
Confidence            99943221 1    1223345564 5555 222344555668777765443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.35  E-value=0.0014  Score=62.63  Aligned_cols=80  Identities=21%  Similarity=0.253  Sum_probs=55.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      +++||++.|+|.|.+|+.++..| ...|+ +|.+++|+.... +.+.+.+....   ...........++++.++++|+|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~~~~---~~~~i~~~~~~~l~~~l~~~DiV  198 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVINNAV---GREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSSHHHH-HHHHHHHHHHH---TSCCEEEECSTTHHHHHHHSSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEECCHHHH-HHHHHHHHhhc---CCceEEEcCHHHHHHHHhcCCEE
Confidence            58899999999999999999998 57898 799999987542 22222211100   00011111124788889999999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      +.++|.
T Consensus       199 InaTp~  204 (283)
T 3jyo_A          199 VNATPM  204 (283)
T ss_dssp             EECSST
T ss_pred             EECCCC
Confidence            999995

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.34  E-value=0.001  Score=64.17  Aligned_cols=107  Identities=16%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             eEEEEecChhHHHH-HHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          167 TVGVIGAGRIGSAY-ARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       167 tvGIIGlG~IG~~v-A~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      +|||||+|.||+.+ ++.+++ -+.+++ ++|+++... +.+.+.       .+..    ..+.+++++++  ++|+|++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~-~~~~~~-------~g~~----~~~~~~~~~l~~~~~D~V~i   68 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERG-AAYATE-------NGIG----KSVTSVEELVGDPDVDAVYV   68 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHH-HHHHHH-------TTCS----CCBSCHHHHHTCTTCCEEEE
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHH-HHHHHH-------cCCC----cccCCHHHHhcCCCCCEEEE
Confidence            79999999999998 777754 778865 789887542 222111       1211    12468999987  4999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhcCCc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~i  291 (398)
                      ++|.....     +-....++.|. +++.- .....-+.++|.++.++..+
T Consensus        69 ~tp~~~h~-----~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~  114 (332)
T 2glx_A           69 STTNELHR-----EQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV  114 (332)
T ss_dssp             CSCGGGHH-----HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred             eCChhHhH-----HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence            99943221     11223344554 44432 22244445566666665443

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.31  E-value=0.0007  Score=65.10  Aligned_cols=167  Identities=17%  Similarity=0.175  Sum_probs=102.6

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHHhhccCCceEEEeeccccccCchH
Q 015895           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDVNA  104 (398)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~eel~~~~~-----~~~d~vi~~~~--~~~~~~-~l~~~~~l~~k~i~~~g~G~d~iD~~~  104 (398)
                      -++.|++.+....++ ..+++|+++.+.     ++.|+|++..+  ..++++ +++...-.  |=|-    |+..+.+..
T Consensus        78 c~~vGi~s~~~~lp~-~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDVD----G~hp~N~G~  150 (303)
T 4b4u_A           78 CRRVGMDSLKIELPQ-ETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISLA--KDVD----GVTCLGFGR  150 (303)
T ss_dssp             HHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--GCTT----CCCHHHHHH
T ss_pred             HHHcCCeEEEEecCc-cCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCcc--cccC----ccCcchHHH
Confidence            445687776555444 368888887654     24789999864  345544 34443221  2110    111111111


Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~  183 (398)
                      ..      .+.++ ....++.-++-+    ++                     ..+.++.||++.|||-++ +|+.+|..
T Consensus       151 L~------~g~~~-~~PcTp~gv~~l----L~---------------------~~~i~l~Gk~vvViGRS~iVGkPla~L  198 (303)
T 4b4u_A          151 MA------MGEAA-YGSATPAGIMTI----LK---------------------ENNIEIAGKHAVVVGRSAILGKPMAMM  198 (303)
T ss_dssp             HH------TTCCC-CCCHHHHHHHHH----HH---------------------HTTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             hc------CCCCc-ccCccHHHHHHH----HH---------------------HHCCCCCCCEEEEEeccccccchHHHH
Confidence            11      11222 233333322222    12                     123589999999999865 59999998


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       184 la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                      | ..-++.|..+..+.                            .++.+..++||+|+.++..    .++|..+   ..|
T Consensus       199 L-~~~~ATVTi~Hs~T----------------------------~dl~~~~~~ADIvV~A~G~----p~~i~~d---~vk  242 (303)
T 4b4u_A          199 L-LQANATVTICHSRT----------------------------QNLPELVKQADIIVGAVGK----AELIQKD---WIK  242 (303)
T ss_dssp             H-HHTTCEEEEECTTC----------------------------SSHHHHHHTCSEEEECSCS----TTCBCGG---GSC
T ss_pred             H-HhcCCEEEEecCCC----------------------------CCHHHHhhcCCeEEeccCC----CCccccc---ccc
Confidence            7 57899998775421                            4688999999999999864    4566654   468


Q ss_pred             CCcEEEEcCCC
Q 015895          264 KEAILVNCSRG  274 (398)
Q Consensus       264 ~gailIN~aRG  274 (398)
                      +|+++||++--
T Consensus       243 ~GavVIDVGin  253 (303)
T 4b4u_A          243 QGAVVVDAGFH  253 (303)
T ss_dssp             TTCEEEECCCB
T ss_pred             CCCEEEEecee
Confidence            99999999753

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.31  E-value=0.00097  Score=65.14  Aligned_cols=69  Identities=22%  Similarity=0.304  Sum_probs=49.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~  241 (398)
                      .+|||||+|.||+..++.+++. -+.+++ ++|+++... +.+.+.+       +     ...+.+++++++  ++|+|+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V~   80 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAAL-KAAVERT-------G-----ARGHASLTDMLAQTDADIVI   80 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHH-------C-----CEEESCHHHHHHHCCCSEEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCCCEEE
Confidence            5799999999999999987433 378865 789887542 2221111       2     223578999997  799999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      +++|..
T Consensus        81 i~tp~~   86 (354)
T 3q2i_A           81 LTTPSG   86 (354)
T ss_dssp             ECSCGG
T ss_pred             ECCCcH
Confidence            999953

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.31  E-value=0.0013  Score=56.14  Aligned_cols=100  Identities=8%  Similarity=-0.000  Sum_probs=59.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC---CHHHH-hhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEV-LREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---sl~el-l~~aDiV  240 (398)
                      .+++.|+|+|.+|+.+++.| ...|.+|++.|+++....+...+.+     ..+.. .......   .+.+. +.++|.|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L-~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~-~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRL-----GDNAD-VIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHH-----CTTCE-EEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCCEEEEECCChHHHHHHHHhh-----cCCCe-EEEcCCCCHHHHHHcChhhCCEE
Confidence            46799999999999999998 6789999999997432221111100     01110 0000111   24444 7899999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +++++...  ..+.-......+.+...+|...+
T Consensus        76 i~~~~~d~--~n~~~~~~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           76 LALSDNDA--DNAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EECSSCHH--HHHHHHHHHHHHTSSSCEEEECS
T ss_pred             EEecCChH--HHHHHHHHHHHHCCCCEEEEEEC
Confidence            99998643  33333445555644445554444

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.30  E-value=0.00064  Score=65.45  Aligned_cols=104  Identities=13%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      .+|||||+|+||+.+++.+++.-++++. ++|+++... +           ..+.   .+....++.+. .++|+|++|+
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~-~-----------~~g~---~~~~~~~l~~~-~~~DvViiat   73 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEV-P-----------FELQ---PFRVVSDIEQL-ESVDVALVCS   73 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------------------CCT---TSCEESSGGGS-SSCCEEEECS
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHH-H-----------HcCC---CcCCHHHHHhC-CCCCEEEECC
Confidence            4899999999999999987444578887 688876431 1           1121   12223455555 7899999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCC--C-chhcHHHHHHHHhcCC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSR--G-PVIDEVALVEHLKQNP  290 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aR--G-~~vde~aL~~aL~~g~  290 (398)
                      |.....     +.....++.|.-+++..-  + .+.+.+.|.++.++..
T Consensus        74 p~~~h~-----~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           74 PSREVE-----RTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             CHHHHH-----HHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CchhhH-----HHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            942221     223345566777776532  2 3344456777777644

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.30  E-value=0.0013  Score=63.22  Aligned_cols=77  Identities=17%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||.|.||..+|..|+ ..|  .+|..||+..... +.....+.......+ ...... ..++ +.++.||+|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~-~~g~~~~V~l~d~~~~~~-~~~~~~l~~~~~~~~-~~~~~~-~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLI-AQGVADDYVFIDANEAKV-KADQIDFQDAMANLE-AHGNIV-INDW-AALADADVVIST   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGGGSS-SCCEEE-ESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEcCCHHHH-HHHHHHHHhhhhhcC-CCeEEE-eCCH-HHhCCCCEEEEe
Confidence            58999999999999999885 445  6999999986432 221111110000000 011111 2456 668999999999


Q ss_pred             cCCC
Q 015895          244 PVLD  247 (398)
Q Consensus       244 ~Plt  247 (398)
                      +|..
T Consensus        77 v~~~   80 (309)
T 1hyh_A           77 LGNI   80 (309)
T ss_dssp             CSCG
T ss_pred             cCCc
Confidence            9863

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.30  E-value=0.00062  Score=58.18  Aligned_cols=104  Identities=13%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             CCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGl----G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      +-++|+|||.    |++|..+++.| +..|.+|+..+|.....                 .-.+...+.+++|+-...|+
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l-~~~G~~v~~vnp~~~~~-----------------~i~G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHH-HHCCCEEEEeCCCcccC-----------------cCCCEEecCCHHHCCCCCCE
Confidence            3468999999    89999999998 68888877766642010                 00122334678888888999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      +++++|. +....+++ +..+ ...+.++++.+..    ++++.+..++..+.
T Consensus        74 avi~vp~-~~~~~v~~-~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           74 LDVFRPP-SALMDHLP-EVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             EEECSCH-HHHTTTHH-HHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             EEEEeCH-HHHHHHHH-HHHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            9999996 56666664 3333 3334566654332    57777777776554

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.28  E-value=0.0022  Score=62.54  Aligned_cols=106  Identities=14%  Similarity=0.242  Sum_probs=62.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .++|+|||.|.+|..+|..|+ ..|. +|..||+..... +.............. .+.......++++.++.||+|+++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la-~~g~~~V~L~D~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~t~d~~ea~~~aDiVi~a   85 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMP-EGKALDLSHVTSVVD-TNVSVRAEYSYEAALTGADCVIVT   85 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHH-HHHHHHHHHHHHHTT-CCCCEEEECSHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECChhHH-HHHHHHHHhhhhccC-CCCEEEEeCCHHHHhCCCCEEEEc
Confidence            368999999999999999985 4565 899999986432 111010000111111 111222236788889999999999


Q ss_pred             c--CCChhh------hh-hc------cH---HHHhcCCCCcEEEEcCC
Q 015895          244 P--VLDKTT------YH-LI------NK---ERLATMKKEAILVNCSR  273 (398)
Q Consensus       244 ~--Plt~~T------~~-li------~~---~~~~~mk~gailIN~aR  273 (398)
                      +  |..+.-      +- ++      -+   +.+....|.+++|+.+-
T Consensus        86 ~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  133 (331)
T 1pzg_A           86 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  133 (331)
T ss_dssp             CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            8  654321      11 10      01   12333357899998855

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.26  E-value=0.0008  Score=57.70  Aligned_cols=101  Identities=9%  Similarity=0.111  Sum_probs=69.0

Q ss_pred             CCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       165 gktvGIIGl----G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      -++|+|||.    |++|..+++.| +..|.+|+..+|.... .                  .+...+.+++|+....|++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l-~~~G~~v~~Vnp~~~~-i------------------~G~~~y~sl~~l~~~vDlv   81 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-V------------------LGRKCYPSVLDIPDKIEVV   81 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-E------------------TTEECBSSGGGCSSCCSEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHH-HHCCCEEEEECCCCCe-E------------------CCeeccCCHHHcCCCCCEE
Confidence            578999999    79999999998 6788887777665321 0                  1222346788888889999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++++|. +....++. +..+ ...+.++++.  |.  .++++.+.+++..+.
T Consensus        82 vi~vp~-~~~~~vv~-~~~~-~gi~~i~~~~--g~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A           82 DLFVKP-KLTMEYVE-QAIK-KGAKVVWFQY--NT--YNREASKKADEAGLI  126 (144)
T ss_dssp             EECSCH-HHHHHHHH-HHHH-HTCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             EEEeCH-HHHHHHHH-HHHH-cCCCEEEECC--Cc--hHHHHHHHHHHcCCE
Confidence            999996 55566663 3333 2334555543  22  367788888876554

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.26  E-value=0.002  Score=62.93  Aligned_cols=70  Identities=26%  Similarity=0.396  Sum_probs=50.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh--hcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell--~~aDiV~  241 (398)
                      .+|||||+|.||+..++.+ +.. +.+++ ++|+++... +.+.+.+       +     ...+.++++++  .+.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~lvav~d~~~~~~-~~~~~~~-------g-----~~~~~~~~~~l~~~~~D~V~   71 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAY-TKSEKLKLVTCYSRTEDKR-EKFGKRY-------N-----CAGDATMEALLAREDVEMVI   71 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEECSSHHHH-HHHHHHH-------T-----CCCCSSHHHHHHCSSCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHH-HhCCCcEEEEEECCCHHHH-HHHHHHc-------C-----CCCcCCHHHHhcCCCCCEEE
Confidence            4799999999999999987 555 78865 779887542 2221211       2     12257899999  5699999


Q ss_pred             EccCCChh
Q 015895          242 LHPVLDKT  249 (398)
Q Consensus       242 l~~Plt~~  249 (398)
                      +++|....
T Consensus        72 i~tp~~~h   79 (354)
T 3db2_A           72 ITVPNDKH   79 (354)
T ss_dssp             ECSCTTSH
T ss_pred             EeCChHHH
Confidence            99996443

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.25  E-value=0.0018  Score=62.64  Aligned_cols=71  Identities=11%  Similarity=0.129  Sum_probs=50.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      .+|||||+|.||+..++.+++.-+.+++ ++|+++... +.+.+.+       +..    ..+.+++++++  ++|+|++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~~~----~~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENA-QKMAKEL-------AIP----VAYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHH-HHHHHHT-------TCC----CCBSSHHHHHHCTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHHc-------CCC----ceeCCHHHHhcCCCCCEEEE
Confidence            5799999999999999998433477876 678876542 2222211       211    13468999998  8999999


Q ss_pred             ccCCCh
Q 015895          243 HPVLDK  248 (398)
Q Consensus       243 ~~Plt~  248 (398)
                      ++|...
T Consensus        74 ~tp~~~   79 (330)
T 3e9m_A           74 PTYNQG   79 (330)
T ss_dssp             CCCGGG
T ss_pred             cCCCHH
Confidence            999543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.23  E-value=0.0008  Score=62.20  Aligned_cols=97  Identities=21%  Similarity=0.186  Sum_probs=64.2

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhcC
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREA  237 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~sl~ell~~a  237 (398)
                      ...++.|+++.|||.|.+|..-++.| ...|++|.+++|...+.+..+.+.        +.  ..+. ..-. ++.+..+
T Consensus        25 ifl~L~gk~VLVVGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~l~~~--------~~--i~~i~~~~~-~~dL~~a   92 (223)
T 3dfz_A           25 VMLDLKGRSVLVVGGGTIATRRIKGF-LQEGAAITVVAPTVSAEINEWEAK--------GQ--LRVKRKKVG-EEDLLNV   92 (223)
T ss_dssp             EEECCTTCCEEEECCSHHHHHHHHHH-GGGCCCEEEECSSCCHHHHHHHHT--------TS--CEEECSCCC-GGGSSSC
T ss_pred             cEEEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHc--------CC--cEEEECCCC-HhHhCCC
Confidence            34589999999999999999999998 688999999999876655443221        11  1111 1112 2446789


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|+.++.. ++.    |......++ -.++||++.
T Consensus        93 dLVIaAT~d-~~~----N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A           93 FFIVVATND-QAV----NKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             SEEEECCCC-THH----HHHHHHHSC-TTCEEEC--
T ss_pred             CEEEECCCC-HHH----HHHHHHHHh-CCCEEEEeC
Confidence            999987653 332    444444456 557788755

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.23  E-value=0.0022  Score=62.92  Aligned_cols=67  Identities=21%  Similarity=0.351  Sum_probs=49.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~  241 (398)
                      .+|||||+|.||+..++.+ +.. +.++. ++|+++... +. .+       ..+     ...+.+++++++  +.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~l~av~d~~~~~~-~~-a~-------~~g-----~~~~~~~~~ll~~~~~D~V~   70 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLA-SAADNLEVHGVFDILAEKR-EA-AA-------QKG-----LKIYESYEAVLADEKVDAVL   70 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HTSTTEEEEEEECSSHHHH-HH-HH-------TTT-----CCBCSCHHHHHHCTTCCEEE
T ss_pred             CcEEEECcCHHHHHHHHHH-HhCCCcEEEEEEcCCHHHH-HH-HH-------hcC-----CceeCCHHHHhcCCCCCEEE
Confidence            4799999999999999987 455 78876 578876542 11 11       112     233578999998  789999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      +++|..
T Consensus        71 i~tp~~   76 (359)
T 3e18_A           71 IATPND   76 (359)
T ss_dssp             ECSCGG
T ss_pred             EcCCcH
Confidence            999953

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.21  E-value=0.0018  Score=62.58  Aligned_cols=69  Identities=12%  Similarity=0.193  Sum_probs=47.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccc-cccCCHHHHhh--cCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLR--EADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sl~ell~--~aDiV~  241 (398)
                      .++||||+|.||+..++.+++.-+.+++ ++|+++... +.+.       +.     .+. ..+.+++++++  +.|+|+
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~-~~~a-------~~-----~~~~~~~~~~~~ll~~~~~D~V~   72 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESA-QAFA-------NK-----YHLPKAYDKLEDMLADESIDVIY   72 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTT-CC----------C-----CCCSCEESCHHHHHTCTTCCEEE
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHH-------HH-----cCCCcccCCHHHHhcCCCCCEEE
Confidence            4799999999999999887433366655 678876532 1110       01     112 13478999998  799999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      +++|..
T Consensus        73 i~tp~~   78 (329)
T 3evn_A           73 VATINQ   78 (329)
T ss_dssp             ECSCGG
T ss_pred             ECCCcH
Confidence            999953

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.20  E-value=0.001  Score=64.72  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=49.5

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV~  241 (398)
                      .+|||||+|.||+..++.++ +.-+.+++ ++|+++... +.+.+.+       +.   ....+.+++++++.  .|+|+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~-~~~~~~~-------g~---~~~~~~~~~~ll~~~~~D~V~   71 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAA-QKVVEQY-------QL---NATVYPNDDSLLADENVDAVL   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHH-HHHHHHT-------TC---CCEEESSHHHHHHCTTCCEEE
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEEE
Confidence            47999999999999999874 23477866 688876542 2222211       21   12235789999986  99999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      +++|..
T Consensus        72 i~tp~~   77 (344)
T 3mz0_A           72 VTSWGP   77 (344)
T ss_dssp             ECSCGG
T ss_pred             ECCCch
Confidence            999953

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.17  E-value=0.00096  Score=63.79  Aligned_cols=70  Identities=13%  Similarity=0.095  Sum_probs=49.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|+.... +.+.+            ........++++ + ++|+
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L-~~~G~~~v~v~nRt~~ka-~~La~------------~~~~~~~~~l~~-l-~~Di  181 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYL-KDNFAKDIYVVTRNPEKT-SEIYG------------EFKVISYDELSN-L-KGDV  181 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHH-HHTTCSEEEEEESCHHHH-HHHCT------------TSEEEEHHHHTT-C-CCSE
T ss_pred             CCccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHH------------hcCcccHHHHHh-c-cCCE
Confidence            358899999999999999999998 57898 999999987542 22111            011111123334 4 8999


Q ss_pred             EEEccCC
Q 015895          240 ISLHPVL  246 (398)
Q Consensus       240 V~l~~Pl  246 (398)
                      |+.++|.
T Consensus       182 vInaTp~  188 (282)
T 3fbt_A          182 IINCTPK  188 (282)
T ss_dssp             EEECSST
T ss_pred             EEECCcc
Confidence            9999986

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.17  E-value=0.0038  Score=67.30  Aligned_cols=147  Identities=18%  Similarity=0.175  Sum_probs=92.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HH----HhhhhhhhhhcCC--CCccccccCCHHHHhhcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KF----VTAYGQFLKANGE--QPVTWKRASSMDEVLREA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~--~~----~~~~~~~~~~~~~--~~~~~~~~~sl~ell~~a  237 (398)
                      ++|||||.|.||+.+|..++ ..|++|+.+|+.+.....  ..    .+...........  .........++++ +++|
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a-~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~a  394 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LSTV  394 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGSC
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-HhhC
Confidence            68999999999999999974 789999999998764211  11    1111111111111  1111122334544 6899


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEE
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIV  317 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvil  317 (398)
                      |+|+=++|-+-+.+.-+-++.=+.++++++|-..+.+=  .-..|.++++. .=.-+++=-|.+  .+.-||.+   ||-
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl--~i~~ia~~~~~-p~r~ig~HFfnP--~~~m~LVE---vi~  466 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDR-PQLVIGTHFFSP--AHVMRLLE---VIP  466 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEECCSS--TTTCCEEE---EEE
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcC--ChHHHHhhcCC-ccccccccccCC--CCCCceEE---Eec
Confidence            99999999888887777777778899999997766553  34556666543 334566655542  22233443   677


Q ss_pred             cCCCC
Q 015895          318 VPHIA  322 (398)
Q Consensus       318 TPHia  322 (398)
                      +|+.+
T Consensus       467 g~~Ts  471 (742)
T 3zwc_A          467 SRYSS  471 (742)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            77655

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.17  E-value=0.002  Score=61.98  Aligned_cols=121  Identities=16%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|+|||.|.||..+|..++ ..|.  +|..||+..... +.....    +.+...  ....... .+. +.++.||+|+
T Consensus         1 mkI~VIGaG~vG~~la~~la-~~g~~~eV~L~D~~~~~~-~~~~~~----l~~~~~~~~~~~i~~-~~~-~a~~~aDvVI   72 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALV-LRGSCSELVLVDRDEDRA-QAEAED----IAHAAPVSHGTRVWH-GGH-SELADAQVVI   72 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHH-HHHHHH----HTTSCCTTSCCEEEE-ECG-GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCCHHHH-HHHHHh----hhhhhhhcCCeEEEE-CCH-HHhCCCCEEE
Confidence            47999999999999999874 5677  999999986432 211111    111100  0111111 243 5689999999


Q ss_pred             EccCCChh-----------hhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEE
Q 015895          242 LHPVLDKT-----------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (398)
Q Consensus       242 l~~Plt~~-----------T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA  294 (398)
                      ++++....           +..++.  .+.+....+++++|+++-+.=+....+.+.....++.|.
T Consensus        73 i~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           73 LTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             ECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             EcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            99953221           111111  123333468899999766544444445555555566554

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.14  E-value=0.0022  Score=61.76  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV~l~  243 (398)
                      .+|||||+|.||+. +++.+++.-+.+++++|+++... +.+.+.+       +...    ...+..+++ .++|+|+++
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~-~~~a~~~-------g~~~----~~~~~~~~l~~~~D~V~i~   70 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVSA----TCTDYRDVLQYGVDAVMIH   70 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCCC----CCSSTTGGGGGCCSEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHc-------CCCc----cccCHHHHhhcCCCEEEEE
Confidence            37999999999994 88887322377888999987542 2222211       2110    012333444 789999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhcCCcc
Q 015895          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~i~  292 (398)
                      +|.... ..+    ..+.++.|. +++.- .--.+-+.++|.++.++..+.
T Consensus        71 tp~~~h-~~~----~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           71 AATDVH-STL----AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             SCGGGH-HHH----HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCchhH-HHH----HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            994222 111    223344453 55552 222445566688888776554

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.14  E-value=0.0031  Score=61.98  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=62.9

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV  240 (398)
                      .+|||||+|.||+. .++.+ +.. +++|. ++|+++....+.           .+    +...+.+++++++  +.|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~~~-----------~~----~~~~~~~~~~ll~~~~~D~V   71 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLI-RSVPGLNLAFVASRDEEKVKRD-----------LP----DVTVIASPEAAVQHPDVDLV   71 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHHHHH-----------CT----TSEEESCHHHHHTCTTCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHHhh-----------CC----CCcEECCHHHHhcCCCCCEE
Confidence            47999999999997 67766 444 78875 778877542211           11    1223578999998  78999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcC--CCchhcHHHHHHHHhcCCc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~a--RG~~vde~aL~~aL~~g~i  291 (398)
                      ++++|.......     ....++.|.-++.-.  --.+-+.++|.++.++..+
T Consensus        72 ~i~tp~~~H~~~-----~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  119 (364)
T 3e82_A           72 VIASPNATHAPL-----ARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQR  119 (364)
T ss_dssp             EECSCGGGHHHH-----HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred             EEeCChHHHHHH-----HHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCC
Confidence            999995332221     222334444443322  2234445556666655443

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.13  E-value=0.003  Score=61.31  Aligned_cols=80  Identities=13%  Similarity=0.117  Sum_probs=53.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHHHHhhhhhhhhhcCCCCccccccC---CHHHH
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEV  233 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---sl~el  233 (398)
                      .+++||++.|+|.|.+|+.+|..| ...|+ +|.+++|+   ... .+.+.+.+.    .............   ++.+.
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L-~~~Ga~~V~i~nR~~~~~~~-a~~la~~~~----~~~~~~~~~~~~~~~~~l~~~  223 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQA-ALDGVKEISIFNRKDDFYAN-AEKTVEKIN----SKTDCKAQLFDIEDHEQLRKE  223 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHH-HHHHHHHHH----HHSSCEEEEEETTCHHHHHHH
T ss_pred             CCccCCEEEEECCChHHHHHHHHH-HHCCCCEEEEEECCCchHHH-HHHHHHHhh----hhcCCceEEeccchHHHHHhh
Confidence            468999999999999999999998 58998 89999998   432 222222211    1110011111122   25567


Q ss_pred             hhcCCEEEEccCC
Q 015895          234 LREADVISLHPVL  246 (398)
Q Consensus       234 l~~aDiV~l~~Pl  246 (398)
                      ++++|+|+.++|.
T Consensus       224 l~~aDiIINaTp~  236 (315)
T 3tnl_A          224 IAESVIFTNATGV  236 (315)
T ss_dssp             HHTCSEEEECSST
T ss_pred             hcCCCEEEECccC
Confidence            7899999999995

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.12  E-value=0.0035  Score=60.90  Aligned_cols=70  Identities=21%  Similarity=0.239  Sum_probs=49.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      .+|||||+|.||+..++.+++.-+.+++ ++|+++... +.+.+.+       +.    ...+.+++++++  .+|+|++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~~----~~~~~~~~~ll~~~~~D~V~i   70 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRL-REMKEKL-------GV----EKAYKDPHELIEDPNVDAVLV   70 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHH-HHHHHHH-------TC----SEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHh-------CC----CceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433377876 689887542 2222211       11    113478999998  8999999


Q ss_pred             ccCCC
Q 015895          243 HPVLD  247 (398)
Q Consensus       243 ~~Plt  247 (398)
                      ++|..
T Consensus        71 ~tp~~   75 (344)
T 3ezy_A           71 CSSTN   75 (344)
T ss_dssp             CSCGG
T ss_pred             cCCCc
Confidence            99953

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.12  E-value=0.0014  Score=64.13  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             CCeEEEEecChhHH-HHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 015895          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~-~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV  240 (398)
                      -.+|||||+|.||+ ..++.+.+.-+.+++ ++|+++... +.+.+.+       +     ...+.+++++++  +.|+|
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~~ll~~~~~D~V   93 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRA-KRFTERF-------G-----GEPVEGYPALLERDDVDAV   93 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHH-HHHHHHH-------C-----SEEEESHHHHHTCTTCSEE
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHH-HHHHHHc-------C-----CCCcCCHHHHhcCCCCCEE
Confidence            45899999999999 788887433378875 778876542 2222221       2     222468999997  58999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      ++++|..
T Consensus        94 ~i~tp~~  100 (350)
T 3rc1_A           94 YVPLPAV  100 (350)
T ss_dssp             EECCCGG
T ss_pred             EECCCcH
Confidence            9999954

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.10  E-value=0.0016  Score=63.91  Aligned_cols=72  Identities=15%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             CCeEEEEecChhHHHHHHHHH-hcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la-~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV  240 (398)
                      -.+|||||+|.||+..++.++ +.-+++++ ++|+++... +.+.+.+       +.   ....+.+++++++  +.|+|
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~---~~~~~~~~~~ll~~~~~D~V   91 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRA-QAALDKY-------AI---EAKDYNDYHDLINDKDVEVV   91 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHH-HHHHHHH-------TC---CCEEESSHHHHHHCTTCCEE
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEE
Confidence            358999999999999999874 23478866 689887542 2222221       11   1223578999997  48999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      ++++|..
T Consensus        92 ~i~tp~~   98 (357)
T 3ec7_A           92 IITASNE   98 (357)
T ss_dssp             EECSCGG
T ss_pred             EEcCCcH
Confidence            9999954

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.08  E-value=0.0046  Score=59.82  Aligned_cols=123  Identities=15%  Similarity=0.185  Sum_probs=66.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||.|.||..+|..|+ ..|.  +|..||+..... +.....+..... .. ....... .+. +.++.||+|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~-~~g~~~~V~l~D~~~~~~-~~~~~~l~~~~~-~~-~~~~i~~-~d~-~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALL-MKGFAREMVLIDVDKKRA-EGDALDLIHGTP-FT-RRANIYA-GDY-ADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGG-GS-CCCEEEE-CCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHH-HHHHHHHHhhhh-hc-CCcEEEe-CCH-HHhCCCCEEEEc
Confidence            47999999999999999874 5566  999999986432 211111100000 00 0111111 243 457899999999


Q ss_pred             cCCChh---hh-hhc------cHHH---HhcCCCCcEEEEcCCCchhcHHHHHHHH--hcCCccEE
Q 015895          244 PVLDKT---TY-HLI------NKER---LATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRV  294 (398)
Q Consensus       244 ~Plt~~---T~-~li------~~~~---~~~mk~gailIN~aRG~~vde~aL~~aL--~~g~i~gA  294 (398)
                      +|....   ++ .++      -++.   +....+++++|+++-+.=+.+..+.+..  ...++.|.
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            986331   11 111      1222   2222578899888664433223332322  33455554

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.08  E-value=0.0018  Score=58.64  Aligned_cols=96  Identities=16%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV~  241 (398)
                      ++|.|+|+|.+|+.+|+.| ...|.+|+++|+++... +.+.+.       .+.. .......+   ++++ +.+||+|+
T Consensus         1 M~iiIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~-~~l~~~-------~~~~-~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSM-LSRKYGVVIINKDRELC-EEFAKK-------LKAT-IIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHH-HHTTCCEEEEESCHHHH-HHHHHH-------SSSE-EEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHH-------cCCe-EEEcCCCCHHHHHhcCcccCCEEE
Confidence            4799999999999999998 67899999999987542 211110       1110 00011122   4443 67899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +++|....  .++-......+.+...+|-..+
T Consensus        71 ~~~~~d~~--n~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           71 ILTPRDEV--NLFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             ECCSCHHH--HHHHHHHHHHTSCCCEEEECCC
T ss_pred             EecCCcHH--HHHHHHHHHHHcCCCeEEEEEe
Confidence            99996433  3333344444444555554444

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.0017  Score=64.89  Aligned_cols=107  Identities=15%  Similarity=0.219  Sum_probs=66.7

Q ss_pred             eEEEEecChhHHHHHHHHHhc-------CCcEEEEEcCChhhHHHHHHhhhhh-----hhhhcCCCCccccccCCHHHHh
Q 015895          167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIYYDLYQATRLEKFVTAYGQ-----FLKANGEQPVTWKRASSMDEVL  234 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~-------fG~~V~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~sl~ell  234 (398)
                      +|+|||.|.-|.++|+.|++.       |+.+|..|.+.+....+...+....     ..-+.-..+.......++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            799999999999999988642       2346888876543110000000000     0000001111223346899999


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +.||+|++++|. ...+.++ ++.-..++++..+|+++-|=
T Consensus       116 ~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEecccc
Confidence            999999999994 4445544 44556778999999999873

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.02  E-value=0.0017  Score=62.93  Aligned_cols=81  Identities=16%  Similarity=0.179  Sum_probs=53.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHHHHhhhhhhhhhcCCCCccccccCCH---HHH
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV  233 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl---~el  233 (398)
                      .+++||++.|+|.|.+|+.++..| ...|+ +|.+++|+   ... .+.+.+.+..   ..+ .........++   .+.
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L-~~~G~~~v~v~nRt~~~~~~-a~~la~~~~~---~~~-~~v~~~~~~~l~~~~~~  217 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQA-AIEGIKEIKLFNRKDDFFEK-AVAFAKRVNE---NTD-CVVTVTDLADQHAFTEA  217 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTHHHH-HHHHHHHHHH---HSS-CEEEEEETTCHHHHHHH
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHH-HHcCCCEEEEEECCCchHHH-HHHHHHHhhh---ccC-cceEEechHhhhhhHhh
Confidence            368999999999999999999998 57898 89999998   432 2222222111   001 00111122344   566


Q ss_pred             hhcCCEEEEccCCC
Q 015895          234 LREADVISLHPVLD  247 (398)
Q Consensus       234 l~~aDiV~l~~Plt  247 (398)
                      +.++|+|+.++|..
T Consensus       218 l~~~DiIINaTp~G  231 (312)
T 3t4e_A          218 LASADILTNGTKVG  231 (312)
T ss_dssp             HHHCSEEEECSSTT
T ss_pred             ccCceEEEECCcCC
Confidence            88999999999963

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.02  E-value=0.0066  Score=59.36  Aligned_cols=114  Identities=15%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      .+|||||+|.||+.+++.+.+.-++++ .++|+++... +.+.+.+       +..+ ....+.+++++++  ++|+|++
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~-~~~a~~~-------~~~~-~~~~~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATAN-------NYPE-STKIHGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT-------TCCT-TCEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CCCC-CCeeeCCHHHHhcCCCCCEEEE
Confidence            479999999999999998743336776 4788876542 2222221       2100 1123468999986  5999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEc--CCCchhcHHHHHHHHhcCCccE
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNC--SRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~--aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      ++|.... .    +-....++.|.-++.-  ---.+-+.++|.++.++..+.-
T Consensus        78 ~tp~~~h-~----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~  125 (362)
T 1ydw_A           78 PLPTSLH-V----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  125 (362)
T ss_dssp             CCCGGGH-H----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             cCChHHH-H----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEE
Confidence            9994322 1    2223345666544432  1223445567888887765543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.02  E-value=0.0012  Score=62.92  Aligned_cols=105  Identities=15%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++.||++.|+|.|.||+++|+.| ...| +|++++++... .+...+.+.....  ....... ...++.+.+.++|+|+
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L-~~~G-~V~v~~r~~~~-~~~l~~~~~~~~~--~~~~~~~-d~~~~~~~~~~~DilV  198 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEK-AEALAKEIAEKLN--KKFGEEV-KFSGLDVDLDGVDIII  198 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHH-HHHHHHHHHHHHT--CCHHHHE-EEECTTCCCTTCCEEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHCC-CEEEEECCHHH-HHHHHHHHhhhcc--cccceeE-EEeeHHHhhCCCCEEE
Confidence            57899999999999999999998 5889 99999998653 2222221110000  0000000 1112345567899999


Q ss_pred             EccCCChhhh---hhccHHHHhcCCCCcEEEEcCCC
Q 015895          242 LHPVLDKTTY---HLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       242 l~~Plt~~T~---~li~~~~~~~mk~gailIN~aRG  274 (398)
                      .++|......   ..+.  ..+.++++.+++|+...
T Consensus       199 n~ag~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~  232 (287)
T 1nvt_A          199 NATPIGMYPNIDVEPIV--KAEKLREDMVVMDLIYN  232 (287)
T ss_dssp             ECSCTTCTTCCSSCCSS--CSTTCCSSSEEEECCCS
T ss_pred             ECCCCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeC
Confidence            9998643210   0120  13467888888888764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.01  E-value=0.0053  Score=59.74  Aligned_cols=104  Identities=16%  Similarity=0.319  Sum_probs=59.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|..+|..++ ..|. +|..||+..... +.............. .+.......++ +.+++||+|++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la-~~g~~~V~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLG-QKDLGDVYMFDIIEGVP-QGKALDLNHCMALIG-SPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECCHHHH-HHHHHHHHhHhhccC-CCCEEEECCCH-HHHCCCCEEEEcC
Confidence            68999999999999999885 5576 899999986432 211100000011111 11112222466 6789999999998


Q ss_pred             --CCChh---------hhhhcc--HHHHhcCCCCcEEEEcCC
Q 015895          245 --VLDKT---------TYHLIN--KERLATMKKEAILVNCSR  273 (398)
Q Consensus       245 --Plt~~---------T~~li~--~~~~~~mk~gailIN~aR  273 (398)
                        |..+.         +..++-  .+.+....|++++|+++-
T Consensus        91 g~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           91 GVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             SCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              43221         111111  112222347889988754

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=96.98  E-value=0.0011  Score=67.14  Aligned_cols=117  Identities=18%  Similarity=0.163  Sum_probs=78.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc---EEEEEc----CC----hhhH---HHHHHhhhhhhhhhcCCCCccccc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYD----LY----QATR---LEKFVTAYGQFLKANGEQPVTWKR  226 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~---~V~~~d----~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  226 (398)
                      ..+.++++.|+|.|..|+.+++.| ...|.   +|+++|    |+    ....   +..+...+    ...  ... ...
T Consensus       182 ~~l~~~rvlvlGAGgAg~aia~~L-~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~----a~~--~~~-~~~  253 (439)
T 2dvm_A          182 KKISEITLALFGAGAAGFATLRIL-TEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWL----LKK--TNG-ENI  253 (439)
T ss_dssp             CCTTTCCEEEECCSHHHHHHHHHH-HHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHH----HTT--SCT-TCC
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHH----hhc--ccc-ccc
Confidence            468899999999999999999998 68897   799999    76    2211   11100011    000  000 001


Q ss_pred             cCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       227 ~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      ..++.+.++.+|+|+.+.|..+   +++.++.++.|+++.++.+++...  .|.-+.+|.+.|.
T Consensus       254 ~~~L~e~l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          254 EGGPQEALKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             CSSHHHHHTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             cccHHHHhccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            3468899999999999998522   456667788999999999996543  3444555555554

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.002  Score=65.79  Aligned_cols=102  Identities=16%  Similarity=0.207  Sum_probs=59.4

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhc
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLRE  236 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sl~ell~~  236 (398)
                      .+..+.+++|+|+|.|.+|+.+++.|++.-|.+|.+++|+.... +.+.+.       .+...  .......++.++++.
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka-~~la~~-------~~~~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANA-QALAKP-------SGSKAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHH-HHHHGG-------GTCEEEECCTTCHHHHHHHHHT
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHh-------cCCcEEEEecCCHHHHHHHHcC
Confidence            45678999999999999999999998533378999999987542 221110       01100  001111246677889


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|+|+.++|..-. .. +..   +.++.|..+++++-
T Consensus        89 ~DvVIn~tp~~~~-~~-v~~---a~l~~g~~vvd~~~  120 (467)
T 2axq_A           89 NDVVISLIPYTFH-PN-VVK---SAIRTKTDVVTSSY  120 (467)
T ss_dssp             SSEEEECSCGGGH-HH-HHH---HHHHHTCEEEECSC
T ss_pred             CCEEEECCchhhh-HH-HHH---HHHhcCCEEEEeec
Confidence            9999999995321 11 212   22345667777653

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.94  E-value=0.0013  Score=63.23  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|+|||.|.||..+|..| . -|.+|.+++|+.... +...+ .+-.....+.. . ......-++....+|+|++++|
T Consensus         3 mkI~IiGaGa~G~~~a~~L-~-~g~~V~~~~r~~~~~-~~l~~-~G~~~~~~~~~-~-~~~~~~~~~~~~~~D~vilavK   76 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYL-S-LYHDVTVVTRRQEQA-AAIQS-EGIRLYKGGEE-F-RADCSADTSINSDFDLLVVTVK   76 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHH-HHHHH-HCEEEEETTEE-E-EECCEEESSCCSCCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHH-h-cCCceEEEECCHHHH-HHHHh-CCceEecCCCe-e-cccccccccccCCCCEEEEEeC
Confidence            6899999999999999998 5 789999999986431 11111 00000000000 0 0000000234678999999998


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      . .++...+  +.++.+.++. +|.+.-|= -.++.|.+.+...++.+
T Consensus        77 ~-~~~~~~l--~~l~~~~~~~-ivs~~nGi-~~~e~l~~~~~~~~vl~  119 (307)
T 3ego_A           77 Q-HQLQSVF--SSLERIGKTN-ILFLQNGM-GHIHDLKDWHVGHSIYV  119 (307)
T ss_dssp             G-GGHHHHH--HHTTSSCCCE-EEECCSSS-HHHHHHHTCCCSCEEEE
T ss_pred             H-HHHHHHH--HHhhcCCCCe-EEEecCCc-cHHHHHHHhCCCCcEEE
Confidence            5 3455544  3445556666 88887763 22344555444444433

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.92  E-value=0.0021  Score=62.22  Aligned_cols=102  Identities=14%  Similarity=0.150  Sum_probs=65.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|||||+|+||+.+++.+ ... ++++ .++|++....           +   .   .+.....++++++.++|+|+++
T Consensus         4 irV~IiG~G~mG~~~~~~l-~~~~~~elvav~d~~~~~~-----------~---~---~gv~~~~d~~~ll~~~DvViia   65 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLI-AKQPDMDLVGIFSRRATLD-----------T---K---TPVFDVADVDKHADDVDVLFLC   65 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEEESSSCCS-----------S---S---SCEEEGGGGGGTTTTCSEEEEC
T ss_pred             CEEEEEeecHHHHHHHHHH-hcCCCCEEEEEEcCCHHHh-----------h---c---CCCceeCCHHHHhcCCCEEEEc
Confidence            3799999999999999987 444 6775 4778764321           0   0   1222235677877889999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCc--hhcH-HHHHHHHhcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP--VIDE-VALVEHLKQNP  290 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~--~vde-~aL~~aL~~g~  290 (398)
                      +|.....     +.....++.|.-+|...-..  +-+. +.|.++.+++.
T Consensus        66 tp~~~h~-----~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           66 MGSATDI-----PEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             SCTTTHH-----HHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHH-----HHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            9853221     23345566677777655433  2233 45677766554

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.91  E-value=0.0026  Score=59.51  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE-Ec
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS-LH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~-l~  243 (398)
                      ++|+|+|+|+||+.+++.+ ...+.++.+ +|+.....                   .++....++++++ ++|+|+ ++
T Consensus         4 mkI~ViGaGrMG~~i~~~l-~~~~~eLva~~d~~~~~~-------------------~gv~v~~dl~~l~-~~DVvIDft   62 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLA-EEKGHEIVGVIENTPKAT-------------------TPYQQYQHIADVK-GADVAIDFS   62 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCC---------------------CCSCBCSCTTTCT-TCSEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHH-HhCCCEEEEEEecCcccc-------------------CCCceeCCHHHHh-CCCEEEEeC
Confidence            5799999999999999987 444436554 78765321                   1222346788888 999987 44


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      .|  ..+..     .+. ++.|.-+|..+.|-
T Consensus        63 ~p--~a~~~-----~~~-l~~g~~vVigTTG~   86 (243)
T 3qy9_A           63 NP--NLLFP-----LLD-EDFHLPLVVATTGE   86 (243)
T ss_dssp             CH--HHHHH-----HHT-SCCCCCEEECCCSS
T ss_pred             Ch--HHHHH-----HHH-HhcCCceEeCCCCC
Confidence            44  22322     333 78888888777773

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.90  E-value=0.0046  Score=60.60  Aligned_cols=68  Identities=10%  Similarity=0.123  Sum_probs=47.5

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC--CEE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a--DiV  240 (398)
                      .+|||||+|.||+. .++.+ ... +.+++ ++|+++... +.+.+       ..+    +...+.++++++++.  |+|
T Consensus         6 ~rigiIG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~-~~~a~-------~~~----~~~~~~~~~~ll~~~~vD~V   72 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSL-LQMQDIRIVAACDSDLERA-RRVHR-------FIS----DIPVLDNVPAMLNQVPLDAV   72 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTCTTEEEEEEECSSHHHH-GGGGG-------TSC----SCCEESSHHHHHHHSCCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-HhCCCcEEEEEEcCCHHHH-HHHHH-------hcC----CCcccCCHHHHhcCCCCCEE
Confidence            58999999999995 88887 454 78876 789887542 11111       111    122357899999865  999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      ++++|.
T Consensus        73 ~i~tp~   78 (359)
T 3m2t_A           73 VMAGPP   78 (359)
T ss_dssp             EECSCH
T ss_pred             EEcCCc
Confidence            999994

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.89  E-value=0.0092  Score=57.90  Aligned_cols=75  Identities=15%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|..+|..++ ..|. +|..||...... +.............. .........++ +.++.||+|++++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la-~~g~~~v~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIV-QKNLGDVVLFDIVKNMP-HGKALDTSHTNVMAY-SNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHH-HHHHHHHHTHHHHHT-CCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCHHHH-HHHHHHHHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEeC
Confidence            58999999999999999885 4566 899999876432 111111101111111 11112222466 6789999999998

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.87  E-value=0.0085  Score=57.86  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=47.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC---cEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK---MNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG---~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDi  239 (398)
                      .++||||+|.||+..++.+ +..+   +++ .++|+++.. .+.+.+.+       +..    ..+.+++++++  +.|+
T Consensus         3 ~rigiiG~G~ig~~~~~~l-~~~~~~~~~l~av~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVL-QTLPRSEHQVVAVAARDLSR-AKEFAQKH-------DIP----KAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTSCTTTEEEEEEECSSHHH-HHHHHHHH-------TCS----CEESSHHHHHHCTTCCE
T ss_pred             cEEEEECchHHHHHHHHHH-HhCCCCCeEEEEEEcCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            4799999999999999987 4443   454 467887654 22222222       211    12468999997  6999


Q ss_pred             EEEccCCC
Q 015895          240 ISLHPVLD  247 (398)
Q Consensus       240 V~l~~Plt  247 (398)
                      |++++|..
T Consensus        70 V~i~tp~~   77 (334)
T 3ohs_X           70 AYVGTQHP   77 (334)
T ss_dssp             EEECCCGG
T ss_pred             EEECCCcH
Confidence            99999954

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.85  E-value=0.0023  Score=63.22  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=35.2

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .-+.||||+|||.|.+|+.+++.+ +.+|++|+++|+++.
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa-~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAA-KEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCC
Confidence            357999999999999999999996 799999999998764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.84  E-value=0.0017  Score=63.81  Aligned_cols=95  Identities=21%  Similarity=0.174  Sum_probs=55.9

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      -+.++|+|+|.|.+|+.+|+.|+  -..+|.+.|+..... +...+    .....   ........++.++++++|+|+.
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~--~~~~v~~~~~~~~~~-~~~~~----~~~~~---~~d~~d~~~l~~~~~~~DvVi~   83 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLK--DEFDVYIGDVNNENL-EKVKE----FATPL---KVDASNFDKLVEVMKEFELVIG   83 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHT--TTSEEEEEESCHHHH-HHHTT----TSEEE---ECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCHHHHHHHHHHh--cCCCeEEEEcCHHHH-HHHhc----cCCcE---EEecCCHHHHHHHHhCCCEEEE
Confidence            34457999999999999999974  346888899876542 21100    00000   0011122357788999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      ++|..- ...+    .-+.++.|.-+++++
T Consensus        84 ~~p~~~-~~~v----~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           84 ALPGFL-GFKS----IKAAIKSKVDMVDVS  108 (365)
T ss_dssp             CCCGGG-HHHH----HHHHHHHTCEEEECC
T ss_pred             ecCCcc-cchH----HHHHHhcCcceEeee
Confidence            999531 1111    112334566666655

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.84  E-value=0.0056  Score=59.19  Aligned_cols=111  Identities=16%  Similarity=0.243  Sum_probs=61.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      -++|+|||.|.||.++|..++. ++.-+|..||+.... .+.....+.......+ ......  .+..+.+++||+|+++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~-~~~~~~dl~~~~~~~~-~~~~i~--~~~~~al~~aDvViia   81 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK-AIGDAMDFNHGKVFAP-KPVDIW--HGDYDDCRDADLVVIC   81 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH-HHHHHHHHHHHTTSSS-SCCEEE--ECCGGGTTTCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcch-HHHHHhhHHHHhhhcC-CCeEEE--cCcHHHhCCCCEEEEc
Confidence            3689999999999999988743 333489999998642 2211111100000000 011111  1234568999999999


Q ss_pred             cCCChh-----------hhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          244 PVLDKT-----------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       244 ~Plt~~-----------T~~li~--~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      .|....           +..++.  .+.+....|++++++++-  ++|.-+
T Consensus        82 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~~~  130 (316)
T 1ldn_A           82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDILT  130 (316)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHHH
T ss_pred             CCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHHHH
Confidence            765321           111110  112333357888999855  455444

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.83  E-value=0.0003  Score=67.17  Aligned_cols=98  Identities=13%  Similarity=0.059  Sum_probs=62.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV~l~~  244 (398)
                      ++|+|||.|.||..+|..|+ ..|.+|.+|+|+.... +.        ....+..+...  ..+..+.+ ..+|+|++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~-~~g~~V~~~~r~~~~~-~~--------~~~~g~~~~~~--~~~~~~~~~~~~D~vilav   70 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQ-QSLPHTTLIGRHAKTI-TY--------YTVPHAPAQDI--VVKGYEDVTNTFDVIIIAV   70 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HHCTTCEEEESSCEEE-EE--------ESSTTSCCEEE--EEEEGGGCCSCEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeccCcE-EE--------EecCCeeccce--ecCchHhcCCCCCEEEEeC
Confidence            57999999999999999984 5578899999875321 10        00112111111  11233433 7899999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v  277 (398)
                      |.. ++...+. +.-..++++.++|.+.-|=-.
T Consensus        71 k~~-~~~~~l~-~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           71 KTH-QLDAVIP-HLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             CGG-GHHHHGG-GHHHHEEEEEEEEECCSSCCC
T ss_pred             Ccc-CHHHHHH-HHHHhhCCCCEEEEeccCccc
Confidence            953 5555542 233446788899999887433

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.81  E-value=0.0037  Score=58.76  Aligned_cols=99  Identities=19%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      -+.++|+++|+|+||+.+++.   . ++++ .+|+   .+               .+..  +.....+++++++++|+|+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~---~k---------------~gel--gv~a~~d~d~lla~pD~VV   65 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL---G-NFEKIYAYD---RI---------------SKDI--PGVVRLDEFQVPSDVSTVV   65 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH---S-CCSEEEEEC---SS---------------CCCC--SSSEECSSCCCCTTCCEEE
T ss_pred             cccceEEEECcCHHHHHHHhc---C-CcEEEEEEe---cc---------------cccc--CceeeCCHHHHhhCCCEEE
Confidence            456799999999999999986   2 5654 5566   11               0111  2223467888888999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde---~aL~~aL~~g~  290 (398)
                      =|.+.     .-+.+.....++.|.-+|-+|-|.+.|.   +.|.++.+.|.
T Consensus        66 e~A~~-----~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg  112 (253)
T 1j5p_A           66 ECASP-----EAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP  112 (253)
T ss_dssp             ECSCH-----HHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred             ECCCH-----HHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence            88752     2333446777899999999999988887   44666666554

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.80  E-value=0.0051  Score=62.50  Aligned_cols=124  Identities=12%  Similarity=0.145  Sum_probs=74.4

Q ss_pred             CCCeEEEEecChh--HHHHHHHHHh--c-CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          164 KGQTVGVIGAGRI--GSAYARMMVE--G-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       164 ~gktvGIIGlG~I--G~~vA~~la~--~-fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      +.++|+|||.|.+  |..++..+++  . .| +|..||+..... +.. ......+..   .+..+....++++.++.||
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~l-e~~-~~~~~~l~~---~~~~I~~TtD~~eAl~dAD   77 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAA-QKN-EVIGNHSGN---GRWRYEAVSTLKKALSAAD   77 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHH-HHH-HHHHTTSTT---SCEEEEEESSHHHHHTTCS
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHH-HHH-HHHHHHHhc---cCCeEEEECCHHHHhcCCC
Confidence            4568999999998  5788877643  2 36 999999987532 111 111111111   2223344468999999999


Q ss_pred             EEEEccCCC-----------hhhhhhccH------------------------HHHhcCCCCcEEEEcCCCchhcHHHHH
Q 015895          239 VISLHPVLD-----------KTTYHLINK------------------------ERLATMKKEAILVNCSRGPVIDEVALV  283 (398)
Q Consensus       239 iV~l~~Plt-----------~~T~~li~~------------------------~~~~~mk~gailIN~aRG~~vde~aL~  283 (398)
                      +|+++++-.           |.-.++...                        +.+....|++++||.+-.-=+-+.++.
T Consensus        78 fVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~  157 (450)
T 3fef_A           78 IVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLY  157 (450)
T ss_dssp             EEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHH
T ss_pred             EEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHH
Confidence            999999632           222333111                        234444689999999886544455555


Q ss_pred             HHHhcCCccE
Q 015895          284 EHLKQNPMFR  293 (398)
Q Consensus       284 ~aL~~g~i~g  293 (398)
                      +.+-..++.|
T Consensus       158 k~~p~~rviG  167 (450)
T 3fef_A          158 KVFPGIKAIG  167 (450)
T ss_dssp             HHCTTCEEEE
T ss_pred             HHCCCCCEEE
Confidence            4433334433

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.80  E-value=0.0039  Score=62.90  Aligned_cols=111  Identities=12%  Similarity=0.142  Sum_probs=64.1

Q ss_pred             CeEEEEecChhHH-HHHHHHHhcC-CcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 015895          166 QTVGVIGAGRIGS-AYARMMVEGF-KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~-~vA~~la~~f-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV  240 (398)
                      .+|||||+|.||+ .+++.+ ... +.++ .++|++.... +.+.+.+       +........+.+++++++  +.|+|
T Consensus        84 irigiIG~G~~g~~~~~~~l-~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~~~~~~~~~~~~~~ll~~~~vD~V  154 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGNAEKA-KIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAV  154 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHT-TTCSSEEEEEEECSCHHHH-HHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEE
T ss_pred             eEEEEECCcHHHHHHHHHHH-hhCCCcEEEEEEcCCHHHH-HHHHHHh-------CCCcccccccCCHHHHhcCCCCCEE
Confidence            4799999999997 898887 444 6775 5788876542 2222221       211100112467889987  79999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~  290 (398)
                      ++++|......     -....++.|. +++.- ---.+-+.++|.++.++..
T Consensus       155 ~iatp~~~h~~-----~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g  201 (433)
T 1h6d_A          155 YIILPNSLHAE-----FAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAAN  201 (433)
T ss_dssp             EECSCGGGHHH-----HHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHT
T ss_pred             EEcCCchhHHH-----HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhC
Confidence            99999532221     2223344554 44432 1223444556777666543

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.77  E-value=0.0021  Score=62.53  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=45.8

Q ss_pred             CeEEEEecChhHHH-HHH-HHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEE
Q 015895          166 QTVGVIGAGRIGSA-YAR-MMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~-~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV  240 (398)
                      .+|||||+|.||+. .++ .+...-++++. ++|+++... +. .       ....    +...+.+++++++.  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~-~-------~~~~----~~~~~~~~~~ll~~~~~D~V   69 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQ-A-------PIYS----HIHFTSDLDEVLNDPDVKLV   69 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG-GG-S-------GGGT----TCEEESCTHHHHTCTTEEEE
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH-HH-H-------HhcC----CCceECCHHHHhcCCCCCEE
Confidence            47999999999996 455 33223477876 788876542 11 0       0111    12235789999986  8999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      ++++|..
T Consensus        70 ~i~tp~~   76 (345)
T 3f4l_A           70 VVCTHAD   76 (345)
T ss_dssp             EECSCGG
T ss_pred             EEcCChH
Confidence            9999954

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.76  E-value=0.0042  Score=63.65  Aligned_cols=128  Identities=11%  Similarity=0.229  Sum_probs=75.8

Q ss_pred             CCeEEEEecChhH--HHHHHHHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          165 GQTVGVIGAGRIG--SAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       165 gktvGIIGlG~IG--~~vA~~la~--~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .++|+|||.|.+|  .++|..+++  ++ +.+|..||+..... +...+.....+...+ .+.......++++.++.||+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l-~~~~~~~~~~l~~~~-~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERL-DAILTIAKKYVEEVG-ADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHH-HHHHHHHHHHHHHTT-CCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHH-HHHHHHHHHHhccCC-CCcEEEEECCHHHHhCCCCE
Confidence            4689999999974  655666642  44 78999999987542 111111000011111 22233334678888999999


Q ss_pred             EEEccCCC---------------------hhh----------------hhhcc--HHHHhcCCCCcEEEEcCCCchhcHH
Q 015895          240 ISLHPVLD---------------------KTT----------------YHLIN--KERLATMKKEAILVNCSRGPVIDEV  280 (398)
Q Consensus       240 V~l~~Plt---------------------~~T----------------~~li~--~~~~~~mk~gailIN~aRG~~vde~  280 (398)
                      |++++|..                     .+|                ..++-  .+.+....|++++||.+-.--+-+.
T Consensus        81 VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~  160 (480)
T 1obb_A           81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTT  160 (480)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHH
T ss_pred             EEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Confidence            99999741                     111                01110  1344445689999999886545555


Q ss_pred             HHHHHHhcCCccEEE
Q 015895          281 ALVEHLKQNPMFRVG  295 (398)
Q Consensus       281 aL~~aL~~g~i~gAa  295 (398)
                      ++.+ +...++.|.+
T Consensus       161 ~~~k-~p~~rviG~c  174 (480)
T 1obb_A          161 LVTR-TVPIKAVGFC  174 (480)
T ss_dssp             HHHH-HSCSEEEEEC
T ss_pred             HHHH-CCCCcEEecC
Confidence            5555 5556676653

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.73  E-value=0.017  Score=55.41  Aligned_cols=126  Identities=17%  Similarity=0.238  Sum_probs=73.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||.|.+|..+|..|+ ..|.  +|..||+..........+.... ..... .+.......+ .+.++.||+|+++
T Consensus         1 MkI~ViGaG~vG~~la~~l~-~~~~~~~v~L~D~~~~~~~g~~~dl~~~-~~~~~-~~~~i~~t~d-~~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCL-LNLDVDEIALVDIAEDLAVGEAMDLAHA-AAGID-KYPKIVGGAD-YSLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHSCCSEEEEECSSHHHHHHHHHHHHHH-HHTTT-CCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECChHHHHHHHHHHHhh-hhhcC-CCCEEEEeCC-HHHhCCCCEEEEC
Confidence            47999999999999999874 4455  9999999875421111110000 00001 1112222235 7788999999998


Q ss_pred             cCCC--h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHHHh----cCCccEEE--ec
Q 015895          244 PVLD--K-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALVEHLK----QNPMFRVG--LD  297 (398)
Q Consensus       244 ~Plt--~-~T~-~li--~~-------~~~~~mk~gailIN~aRG~~vde~aL~~aL~----~g~i~gAa--lD  297 (398)
                      .+..  + .++ .++  |.       +.+....|++++++++  .++|.-..+-.-.    ..++.|.+  ||
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            7542  1 122 222  21       2455568899999998  4566555332222    34666764  66

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.72  E-value=0.0047  Score=62.06  Aligned_cols=96  Identities=20%  Similarity=0.231  Sum_probs=62.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV  240 (398)
                      +.+|.|+|+|++|+.+|+.| ...|.+|++.|.++... +.        ++..+.. ..+....+   |+++ +.+||+|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L-~~~g~~vvvId~d~~~v-~~--------~~~~g~~-vi~GDat~~~~L~~agi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLL-LSSGVKMVVLDHDPDHI-ET--------LRKFGMK-VFYGDATRMDLLESAGAAKAEVL   72 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEECCHHHH-HH--------HHHTTCC-CEESCTTCHHHHHHTTTTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HH--------HHhCCCe-EEEcCCCCHHHHHhcCCCccCEE
Confidence            45799999999999999998 68999999999987642 21        1122221 11112223   3333 6789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +++++....  .+.-......+.+...+|--++
T Consensus        73 iv~~~~~~~--n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           73 INAIDDPQT--NLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             EECCSSHHH--HHHHHHHHHHHCTTCEEEEEES
T ss_pred             EECCCChHH--HHHHHHHHHHhCCCCeEEEEEC
Confidence            999996433  3333456666777766665444

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.66  E-value=0.0086  Score=57.19  Aligned_cols=104  Identities=11%  Similarity=0.089  Sum_probs=65.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~  241 (398)
                      .+|+|+|+ |++|+.+++.+ +..|.+++ ..||....                 ....+...+.+++|+..  ..|+++
T Consensus         8 ~rVaViG~sG~~G~~~~~~l-~~~g~~~V~~V~p~~~g-----------------~~~~G~~vy~sl~el~~~~~~D~vi   69 (288)
T 2nu8_A            8 TKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGG-----------------TTHLGLPVFNTVREAVAATGATASV   69 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHHCCCEEE
T ss_pred             CEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCccc-----------------ceeCCeeccCCHHHHhhcCCCCEEE
Confidence            57999999 99999999987 55688743 56664210                 00112233568999988  899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc-hhcHHHHHHHHhcCCc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPM  291 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~-~vde~aL~~aL~~g~i  291 (398)
                      +++|. +.....+. +.++ .... .+|..+.|- .-+.+.|.++.++..+
T Consensus        70 I~tP~-~~~~~~~~-ea~~-~Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv  116 (288)
T 2nu8_A           70 IYVPA-PFCKDSIL-EAID-AGIK-LIITITEGIPTLDMLTVKVKLDEAGV  116 (288)
T ss_dssp             ECCCG-GGHHHHHH-HHHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EecCH-HHHHHHHH-HHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            99995 33333332 2222 2222 344455553 3345578888877554

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.65  E-value=0.0098  Score=57.91  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=48.0

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV  240 (398)
                      .+|||||+|.||+. .++.+ +.. +.++. ++|+++....+.           .    .+...+.+++++++.  .|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~-~~~~~~~l~av~d~~~~~~~~~-----------~----~~~~~~~~~~~ll~~~~vD~V   71 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLI-MGTPGLELAGVSSSDASKVHAD-----------W----PAIPVVSDPQMLFNDPSIDLI   71 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHHHTT-----------C----SSCCEESCHHHHHHCSSCCEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCcEEEEEECCCHHHHHhh-----------C----CCCceECCHHHHhcCCCCCEE
Confidence            47999999999997 77776 444 77865 778876542110           0    112235789999976  8999


Q ss_pred             EEccCCChh
Q 015895          241 SLHPVLDKT  249 (398)
Q Consensus       241 ~l~~Plt~~  249 (398)
                      ++++|....
T Consensus        72 ~i~tp~~~H   80 (352)
T 3kux_A           72 VIPTPNDTH   80 (352)
T ss_dssp             EECSCTTTH
T ss_pred             EEeCChHHH
Confidence            999996443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.64  E-value=0.0021  Score=60.01  Aligned_cols=101  Identities=19%  Similarity=0.208  Sum_probs=64.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh-------------------hhHHHHHHhhhhhhhhhcCC-
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-------------------ATRLEKFVTAYGQFLKANGE-  219 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~~-  219 (398)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|+..                   .+. +...+    .+..... 
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La-~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka-~~~~~----~l~~~np~  100 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKV-ESARD----ALTRINPH  100 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHH-HHHHH----HHHHHCTT
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHH-HcCCCeEEEEcCCCcccccCCcccccChhhcCcHHH-HHHHH----HHHHHCCC
Confidence            4589999999999999999999984 6776 899999876                   221 11111    1111100 


Q ss_pred             CCccc-c-cc--CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          220 QPVTW-K-RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       220 ~~~~~-~-~~--~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      ..... . ..  .+++++++++|+|+.+++ +.+++.++++.....   +..+|+.
T Consensus       101 ~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B          101 IAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             SEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             cEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence            00000 0 01  135678899999999997 578888888766553   3445654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.62  E-value=0.0065  Score=55.50  Aligned_cols=94  Identities=10%  Similarity=0.159  Sum_probs=58.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV  240 (398)
                      .+++.|+|+|.+|+.+|+.| ...|. |++.|+++... +.        +. .+. ........+   ++++ +.+||.|
T Consensus         9 ~~~viI~G~G~~G~~la~~L-~~~g~-v~vid~~~~~~-~~--------~~-~~~-~~i~gd~~~~~~l~~a~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRK-KV--------LR-SGA-NFVHGDPTRVSDLEKANVRGARAV   75 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHS-TTSEE-EEEESCGGGHH-HH--------HH-TTC-EEEESCTTCHHHHHHTTCTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHH-HhCCe-EEEEECCHHHH-HH--------Hh-cCC-eEEEcCCCCHHHHHhcCcchhcEE
Confidence            45799999999999999997 68888 99999886542 11        11 111 110111222   3333 6789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ++++|..  ..++.-......+.++..+|--.+
T Consensus        76 i~~~~~d--~~n~~~~~~a~~~~~~~~iia~~~  106 (234)
T 2aef_A           76 IVDLESD--SETIHCILGIRKIDESVRIIAEAE  106 (234)
T ss_dssp             EECCSCH--HHHHHHHHHHHHHCSSSEEEEECS
T ss_pred             EEcCCCc--HHHHHHHHHHHHHCCCCeEEEEEC
Confidence            9999863  333444455666777745544333

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.58  E-value=0.018  Score=55.05  Aligned_cols=108  Identities=17%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ...++|+|||.|.||..+|..|+ ..|.  +|..+|+..........+.... ..-.+  ........+. +.++.||+|
T Consensus         5 ~~~mkI~IiGaG~vG~~~a~~l~-~~g~~~~V~l~d~~~~~~~~~~~~~~~~-~~~~~--~~~v~~~~~~-~~~~~aD~V   79 (319)
T 1lld_A            5 VKPTKLAVIGAGAVGSTLAFAAA-QRGIAREIVLEDIAKERVEAEVLDMQHG-SSFYP--TVSIDGSDDP-EICRDADMV   79 (319)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHHHHHHHHHHHT-GGGST--TCEEEEESCG-GGGTTCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChhHHHHHHHHHHhh-hhhcC--CeEEEeCCCH-HHhCCCCEE
Confidence            34468999999999999999884 5677  9999999864321000000000 00000  1111111233 457899999


Q ss_pred             EEccCCC--h-hhh--------hhcc--HHHHhcCCCCcEEEEcCCCc
Q 015895          241 SLHPVLD--K-TTY--------HLIN--KERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       241 ~l~~Plt--~-~T~--------~li~--~~~~~~mk~gailIN~aRG~  275 (398)
                      +++++..  + +++        .++.  .+.+....+++++|+++-|-
T Consensus        80 ii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           80 VITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            9999532  1 111        1110  11222236788999987654

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.55  E-value=0.38  Score=46.64  Aligned_cols=107  Identities=19%  Similarity=0.237  Sum_probs=68.7

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-.-.+.+.+......+..|   ..+....+++|.++++|+
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  239 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADV  239 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSE
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHHccCCE
Confidence            4889999999996  9999999987 589999999987532100111000000001122   123345789999999999


Q ss_pred             EEEccCC-------Chh-----hhhhccHHHHhcC-CCCcEEEEcC
Q 015895          240 ISLHPVL-------DKT-----TYHLINKERLATM-KKEAILVNCS  272 (398)
Q Consensus       240 V~l~~Pl-------t~~-----T~~li~~~~~~~m-k~gailIN~a  272 (398)
                      |..-.=.       .++     ..--++++.++.+ |++++|.-|.
T Consensus       240 vyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          240 VYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             EEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             EEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            9763220       011     1233588999999 9999998884

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.53  E-value=0.4  Score=46.25  Aligned_cols=104  Identities=13%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.|.+|+++|= +++..+.+..+ ..||++|.+..|..-   +......+..   .+..|   ..+....+++|.++++
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~---a~~~g---~~~~~~~d~~eav~~a  224 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQN---AAESG---GSFELLHDPVKAVKDA  224 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHH---HHHHT---CEEEEESCHHHHTTTC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHH---HHHcC---CeEEEEeCHHHHhCCC
Confidence            488999999997 89999999987 589999999987531   1111101100   01112   1133357899999999


Q ss_pred             CEEEEccCC-------Chhh-----hhhccHHHHhcCCCCcEEEEcC
Q 015895          238 DVISLHPVL-------DKTT-----YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       238 DiV~l~~Pl-------t~~T-----~~li~~~~~~~mk~gailIN~a  272 (398)
                      |+|..-.=.       .++-     .--++.+.++.+|+++++.-|.
T Consensus       225 Dvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          225 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             CEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            999763210       1111     1336889999999999999884

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.53  E-value=0.01  Score=58.00  Aligned_cols=67  Identities=10%  Similarity=0.161  Sum_probs=47.2

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV  240 (398)
                      .+|||||+|.||+. .++.+ +.. +++|. ++|+++....+.           .+    +...+.+++++++  +.|+|
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~~~-----------~~----~~~~~~~~~~ll~~~~vD~V   69 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLL-DVLDEYQISKIMTSRTEEVKRD-----------FP----DAEVVHELEEITNDPAIELV   69 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECSCHHHHHHH-----------CT----TSEEESSTHHHHTCTTCCEE
T ss_pred             ceEEEEccCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHHhh-----------CC----CCceECCHHHHhcCCCCCEE
Confidence            47999999999997 67766 455 77765 678876442111           11    1223578999997  78999


Q ss_pred             EEccCCCh
Q 015895          241 SLHPVLDK  248 (398)
Q Consensus       241 ~l~~Plt~  248 (398)
                      ++++|...
T Consensus        70 ~i~tp~~~   77 (358)
T 3gdo_A           70 IVTTPSGL   77 (358)
T ss_dssp             EECSCTTT
T ss_pred             EEcCCcHH
Confidence            99999643

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.51  E-value=0.011  Score=57.22  Aligned_cols=110  Identities=16%  Similarity=0.234  Sum_probs=62.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||.|.||+.+|..++ ..|.  +|..+|...........+.... ....+ ....... .+..+.+++||+|+++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~~g~a~DL~~~-~~~~~-~~~~v~~-~~~~~a~~~aDvVii~   76 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVA-RQDVAKEVVMVDIKDGMPQGKALDMRES-SPIHG-FDTRVTG-TNDYGPTEDSDVCIIT   76 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCSSEEEEECSSTTHHHHHHHHHHHH-HHHHT-CCCEEEE-ESSSGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCchHHHHHHHHHHhcc-ccccC-CCcEEEE-CCCHHHhCCCCEEEEC
Confidence            57999999999999998874 3344  9999999875321111110000 00000 0011111 1345678999999998


Q ss_pred             cCCCh---hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          244 PVLDK---TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       244 ~Plt~---~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      .+...   .+| .++  |       .+.+....|++++++++-  ++|.-.
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN--Pvd~~t  125 (314)
T 3nep_X           77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN--PLDVMT  125 (314)
T ss_dssp             CCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS--SHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC--chhHHH
Confidence            76431   121 122  1       124455578999999985  444444

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.47  E-value=0.0099  Score=57.37  Aligned_cols=108  Identities=12%  Similarity=0.110  Sum_probs=64.7

Q ss_pred             CeEEEEecChhHH-HHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEE
Q 015895          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~-~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~  241 (398)
                      .+|||||+|.+|. .+++.+ +.-+.++ .++|+++... +.+.+.+       +.    ...+.+++++++  +.|+|+
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l-~~~~~~lvav~d~~~~~~-~~~a~~~-------~~----~~~~~~~~~ll~~~~~D~V~   71 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQL-IDAGAELAGVFESDSDNR-AKFTSLF-------PS----VPFAASAEQLITDASIDLIA   71 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHH-HHTTCEEEEEECSCTTSC-HHHHHHS-------TT----CCBCSCHHHHHTCTTCCEEE
T ss_pred             cEEEEECCChHHHHHhhhhh-cCCCcEEEEEeCCCHHHH-HHHHHhc-------CC----CcccCCHHHHhhCCCCCEEE
Confidence            4799999999996 677776 4558885 5788876542 2211111       11    123578999997  689999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhcCCc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~i  291 (398)
                      +++|.....     +-..+.++.|. +++.- ---.+-+.++|.++.++.++
T Consensus        72 i~tp~~~h~-----~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~  118 (336)
T 2p2s_A           72 CAVIPCDRA-----ELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGR  118 (336)
T ss_dssp             ECSCGGGHH-----HHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCC
T ss_pred             EeCChhhHH-----HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence            999953222     22233344554 44442 22234455567776665443

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.47  E-value=0.0086  Score=58.60  Aligned_cols=67  Identities=15%  Similarity=0.156  Sum_probs=46.4

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV~  241 (398)
                      .+|||||+|.||+. .++.+++.-++++. ++|+++....+.           .+    +...+.+++++++.  .|+|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-----------~~----~~~~~~~~~~ll~~~~vD~V~   70 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKER-----------YP----QASIVRSFKELTEDPEIDLIV   70 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTT-----------CT----TSEEESCSHHHHTCTTCCEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHh-----------CC----CCceECCHHHHhcCCCCCEEE
Confidence            47999999999997 67766333377775 678876431110           11    12335789999987  89999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      +++|..
T Consensus        71 i~tp~~   76 (362)
T 3fhl_A           71 VNTPDN   76 (362)
T ss_dssp             ECSCGG
T ss_pred             EeCChH
Confidence            999953

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.42  E-value=0.0066  Score=59.24  Aligned_cols=111  Identities=8%  Similarity=0.062  Sum_probs=64.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ..++|+|||.|.||+.+|..++ ..|.  +|..+|...........+.......  . .........+.++ +++||+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la-~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~--~-~~~~i~~t~d~~~-~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVL-MKDLADEVALVDVMEDKLKGEMMDLEHGSLF--L-HTAKIVSGKDYSV-SAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHH-HHCCCSEEEEECSCHHHHHHHHHHHHHHGGG--S-CCSEEEEESSSCS-CSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHHhhhhhhc--c-cCCeEEEcCCHHH-hCCCCEEE
Confidence            5689999999999999998874 4454  8999999765321111111110000  0 0111122245655 89999999


Q ss_pred             EccCCCh---hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          242 LHPVLDK---TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       242 l~~Plt~---~T~-~li--~~-------~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      ++.....   +|| .++  |.       +.+....|++++++++-  ++|.-.
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN--Pvdi~t  145 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE--LGTDKN  145 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC--ccHHHH
Confidence            8854321   122 122  11       23444578999999984  444433

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.42  E-value=0.01  Score=57.76  Aligned_cols=111  Identities=19%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      -.+++|+|||.|.||+.+|..++ ..|.  ++..||...........+     +.+............+..+.+++||+|
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~~g~a~D-----L~~~~~~~~~~~i~~~~~~a~~~aDiV   80 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMV-LQGIAQEIGIVDIFKDKTKGDAID-----LEDALPFTSPKKIYSAEYSDAKDADLV   80 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHH-----HHTTGGGSCCCEEEECCGGGGTTCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHHHHHHhh-----HhhhhhhcCCcEEEECcHHHhcCCCEE
Confidence            35678999999999999998874 3444  899999976432111111     111000000111112335668999999


Q ss_pred             EEccCCC--h-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          241 SLHPVLD--K-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       241 ~l~~Plt--~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      +++....  + +|+ .++  |       .+.+....|++++++++-  ++|.-+
T Consensus        81 vi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN--Pvdi~t  132 (326)
T 3vku_A           81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN--PVDILT  132 (326)
T ss_dssp             EECCCCC----------------CHHHHHHHHHTTTCCSEEEECSS--SHHHHH
T ss_pred             EECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC--chHHHH
Confidence            9986532  1 122 222  1       124455568899999974  455444

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.42  E-value=0.0076  Score=58.35  Aligned_cols=121  Identities=17%  Similarity=0.218  Sum_probs=65.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|+|||.|.+|..+|..++ ..|.  +|..||...... +.....    +.+...  ...... ..+ .+.++.||+|+
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~-~~~~~~ev~L~Di~~~~~-~g~~~d----l~~~~~~~~~~~i~-~~~-~~a~~~aDvVi   79 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMA-LRQTANELVLIDVFKEKA-IGEAMD----INHGLPFMGQMSLY-AGD-YSDVKDCDVIV   79 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HTTCSSEEEEECCC---C-CHHHHH----HTTSCCCTTCEEEC---C-GGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChHHH-HHHHHH----HHHhHHhcCCeEEE-ECC-HHHhCCCCEEE
Confidence            58999999999999998874 4455  999999875331 110000    111100  011111 123 45689999999


Q ss_pred             EccCCChhhhhh-----c--c-------HHHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEE--Eec
Q 015895          242 LHPVLDKTTYHL-----I--N-------KERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV--GLD  297 (398)
Q Consensus       242 l~~Plt~~T~~l-----i--~-------~~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gA--alD  297 (398)
                      ++.+.. ...+.     +  |       .+.+....|++++|+++-  ++|.-.  +.+.  +...++.|.  .||
T Consensus        80 i~~g~p-~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           80 VTAGAN-RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN--PVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             ECCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS--SHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             EcCCCC-CCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecC--cHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            998753 21121     1  1       122333368999999743  444444  3333  334466665  356

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.39  E-value=0.011  Score=59.87  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=71.4

Q ss_pred             ccccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       160 g~~l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      +..+.|++|+|+|+.          .-...+++.| ...|++|.+|||........   .|       .    +.....+
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~-------~----~~~~~~~  381 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAAL-QDAGATVKAYDPEGVEQASK---ML-------T----DVEFVEN  381 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHH-HHTSCEEEEECSSCHHHHGG---GC-------S----SCCBCSC
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCCHhHHH---hc-------C----CceEecC
Confidence            456899999999997          6788999998 78999999999987542211   00       0    1223467


Q ss_pred             HHHHhhcCCEEEEccCCChhhhhhccHHHH-hcCCCCcEEEEcCCCchhcHHHH
Q 015895          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVAL  282 (398)
Q Consensus       230 l~ell~~aDiV~l~~Plt~~T~~li~~~~~-~~mk~gailIN~aRG~~vde~aL  282 (398)
                      +++.++.||.|+++++- ++-+. ++-+.+ +.|+ +.+++|+ |+ +.|.+.+
T Consensus       382 ~~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          382 PYAAADGADALVIVTEW-DAFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             HHHHHTTBSEEEECSCC-TTTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             hhHHhcCCCEEEEeeCC-HHhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            89999999999999974 23233 454444 4465 4678885 54 4555543

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.38  E-value=0.38  Score=46.81  Aligned_cols=107  Identities=13%  Similarity=0.102  Sum_probs=69.3

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-.-.+.+.+.........|   ..+....+++|.++++|+
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  227 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRALAQQNG---GNITLTEDVAKGVEGADF  227 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT---CEEEEESCHHHHHTTCSE
T ss_pred             CCCCcEEEEECCCccchHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhCCCCE
Confidence            5889999999986  9999999987 578999999987532100111100000011222   123335789999999999


Q ss_pred             EEEccC----CC----hh-----hhhhccHHHHhcC-CCCcEEEEcC
Q 015895          240 ISLHPV----LD----KT-----TYHLINKERLATM-KKEAILVNCS  272 (398)
Q Consensus       240 V~l~~P----lt----~~-----T~~li~~~~~~~m-k~gailIN~a  272 (398)
                      |..-.=    ..    .+     ..--++.+.++.+ |++++|.-|.
T Consensus       228 vytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          228 IYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             EEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             EEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence            976322    10    11     1124689999999 9999999884

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.37  E-value=0.36  Score=46.31  Aligned_cols=104  Identities=12%  Similarity=0.066  Sum_probs=70.2

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.|.+|+++|= +++..+.+..+ ..||++|.+..|..-.-.+...+       ..     .+....+++|.++++|+|
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~-------~~-----~~~~~~d~~eav~~aDvv  217 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVA-PLAGLKVRVATPKGYEPDPGLLK-------RA-----NAFFTHDPKEAALGAHAL  217 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHH-------HH-----TCEEESCHHHHHTTCSEE
T ss_pred             CcCCcEEEEECCCchhHHHHHHHH-HHcCCEEEEECCchhcCCHHHHh-------hc-----eeEEECCHHHHhcCCCEE
Confidence            488999999998 89999999887 57899999988753210001100       00     023346899999999999


Q ss_pred             EEccC----CC--hhh------hhhccHHHHhcCCCCcEEEEcC---CCchhc
Q 015895          241 SLHPV----LD--KTT------YHLINKERLATMKKEAILVNCS---RGPVID  278 (398)
Q Consensus       241 ~l~~P----lt--~~T------~~li~~~~~~~mk~gailIN~a---RG~~vd  278 (398)
                      ..-.=    ..  ...      .--++++.++.+|+++++.-|.   ||.=|+
T Consensus       218 y~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~  270 (301)
T 2ef0_A          218 YTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETT  270 (301)
T ss_dssp             EECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBC
T ss_pred             EecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccC
Confidence            76321    10  111      1235899999999999999986   554343

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.36  E-value=0.014  Score=56.24  Aligned_cols=109  Identities=17%  Similarity=0.274  Sum_probs=60.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.||..+|..++ ..|. +|..+|...... +.....+........ .........+. +.++.||+|+++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la-~~g~~~v~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~a~   78 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLA-AKELGDIVLLDIVEGVP-QGKALDLYEASPIEG-FDVRVTGTNNY-ADTANSDVIVVTS   78 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCCeEEEEeCCccHH-HHHHHhHHHhHhhcC-CCeEEEECCCH-HHHCCCCEEEEcC
Confidence            58999999999999999874 5565 899999876432 111111100000001 11112222456 6689999999998


Q ss_pred             CCChhhhhh-----c--c----HH---HHhcCCCCcEEEEcCCCchhcHHH
Q 015895          245 VLDKTTYHL-----I--N----KE---RLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       245 Plt~~T~~l-----i--~----~~---~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      +. +...+.     +  |    ++   .+....+++++++++-  ++|.-+
T Consensus        79 g~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN--Pv~~~t  126 (309)
T 1ur5_A           79 GA-PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN--PLDAMT  126 (309)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS--SHHHHH
T ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC--chHHHH
Confidence            53 221111     0  1    12   2333458899999754  455443

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.36  E-value=0.017  Score=55.83  Aligned_cols=124  Identities=19%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .++|+|||.|.+|..+|..++. ++.-+|..||...........+ +.......+ .+.....  +..+.++.||+|+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~d-l~~~~~~~~-~~~~v~~--~~~~a~~~aDvVvi~   81 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMD-LKHATPYSP-TTVRVKA--GEYSDCHDADLVVIC   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHH-HHHHGGGSS-SCCEEEE--CCGGGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhh-HHhhhhhcC-CCeEEEe--CCHHHhCCCCEEEEC
Confidence            4689999999999999988753 2335899999875422111111 100011110 1111211  335668999999999


Q ss_pred             cCCChh---hh--------hhcc--HHHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEE
Q 015895          244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV  294 (398)
Q Consensus       244 ~Plt~~---T~--------~li~--~~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gA  294 (398)
                      .+....   ++        .++-  .+.+....|++++|+++  .++|.-.  +.+.  +...++.|.
T Consensus        82 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           82 AGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEec
Confidence            865321   11        1111  12333447899999976  4444433  3333  333456565

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.34  E-value=0.0077  Score=57.99  Aligned_cols=99  Identities=12%  Similarity=0.174  Sum_probs=56.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      .++|+|||.|.||..+|..++ ..|.  +|..+|.... ......+.     .......  .....++ +.++.||+|++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~-~~g~~~ev~L~Di~~~-~~g~a~dl-----~~~~~~~--i~~t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAIS-AKGIADRLVLLDLSEG-TKGATMDL-----EIFNLPN--VEISKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECCC------CHHHH-----HHHTCTT--EEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEcCCcc-hHHHHHHH-----hhhcCCC--eEEeCCH-HHHCCCCEEEE
Confidence            378999999999999998874 3455  9999999764 21111111     0111111  2222466 55899999999


Q ss_pred             ccCCC----------hhhhhhcc--HHHHhcCCCCcEEEEcCC
Q 015895          243 HPVLD----------KTTYHLIN--KERLATMKKEAILVNCSR  273 (398)
Q Consensus       243 ~~Plt----------~~T~~li~--~~~~~~mk~gailIN~aR  273 (398)
                      +....          .++..++-  .+.+....+.+++|+++-
T Consensus        84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            87321          01111110  112222348899999876

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.33  E-value=0.025  Score=55.13  Aligned_cols=69  Identities=20%  Similarity=0.326  Sum_probs=43.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC--------CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF--------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f--------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-  235 (398)
                      -+|||||+|.||+.-++.+ +.+        +++|+ ++|+++... +.+.+.|       +..    ..+.+++++++ 
T Consensus        26 irvgiIG~G~ig~~H~~a~-~~~~~~~~~~~~~~lvav~d~~~~~a-~~~a~~~-------g~~----~~y~d~~ell~~   92 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAW-NAVKTVFGDVERPRLVHLAEANAGLA-EARAGEF-------GFE----KATADWRALIAD   92 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTHHHHHCSSCCCEEEEEECC--TTH-HHHHHHH-------TCS----EEESCHHHHHHC
T ss_pred             ccEEEEcCCHHHHHHHHHH-HhhhhhhccCCCcEEEEEECCCHHHH-HHHHHHh-------CCC----eecCCHHHHhcC
Confidence            4799999999999877654 322        45654 668876542 2222222       211    13478999996 


Q ss_pred             -cCCEEEEccCCC
Q 015895          236 -EADVISLHPVLD  247 (398)
Q Consensus       236 -~aDiV~l~~Plt  247 (398)
                       +.|+|++++|..
T Consensus        93 ~~iDaV~IatP~~  105 (393)
T 4fb5_A           93 PEVDVVSVTTPNQ  105 (393)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCcEEEECCChH
Confidence             479999999953

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.32  E-value=0.018  Score=58.90  Aligned_cols=128  Identities=14%  Similarity=0.247  Sum_probs=74.2

Q ss_pred             CCeEEEEecChh-HHHHHHHHHh---cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       165 gktvGIIGlG~I-G~~vA~~la~---~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .++|+|||.|.. |.++|..|++   ++ +.+|..||+..... +...+.-...+...+ .+.......++++.++.||+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~-~~~~~~~~~~l~~~~-~~~~I~~t~D~~eal~~AD~  105 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQ-DRIAGACDVFIREKA-PDIEFAATTDPEEAFTDVDF  105 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHH-HHHHHHHHHHHHHHC-TTSEEEEESCHHHHHSSCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHH-HHHHHHHHHHhccCC-CCCEEEEECCHHHHHcCCCE
Confidence            468999999998 6667755543   45 67899999987542 111111000011111 12223333578888999999


Q ss_pred             EEEccCCChh---hh----------------------------hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 015895          240 ISLHPVLDKT---TY----------------------------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (398)
Q Consensus       240 V~l~~Plt~~---T~----------------------------~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL  286 (398)
                      |++++|....   ++                            .++-  .+.+....|++++||.+-.-=+-+.++.+..
T Consensus       106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~  185 (472)
T 1u8x_X          106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR  185 (472)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHS
T ss_pred             EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            9999986221   11                            0110  1234445689999999876544445555544


Q ss_pred             hcCCccEE
Q 015895          287 KQNPMFRV  294 (398)
Q Consensus       287 ~~g~i~gA  294 (398)
                      ...++.|.
T Consensus       186 p~~rViG~  193 (472)
T 1u8x_X          186 PNSKILNI  193 (472)
T ss_dssp             TTCCEEEC
T ss_pred             CCCCEEEe
Confidence            34456664

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.32  E-value=0.015  Score=56.55  Aligned_cols=110  Identities=20%  Similarity=0.292  Sum_probs=62.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      .++|+|||.|.||+.+|..++ ..|.  +|..+|...........+.-.. ....+ .....  ..+..+.+++||+|++
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~-~~~~~~~l~l~D~~~~k~~g~a~DL~~~-~~~~~-~~v~i--~~~~~~a~~~aDvVvi   79 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALI-NQGITDELVVIDVNKEKAMGDVMDLNHG-KAFAP-QPVKT--SYGTYEDCKDADIVCI   79 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHHHHHT-GGGSS-SCCEE--EEECGGGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEecchHHHHHHHHHHHhc-ccccc-CCeEE--EeCcHHHhCCCCEEEE
Confidence            568999999999999999874 4454  8999999764321111110000 00000 01111  1122356899999999


Q ss_pred             ccCCC--h-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          243 HPVLD--K-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       243 ~~Plt--~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      +.+..  + +++ .++  |       .+.+....|++++++++-  ++|.-+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN--Pvd~~t  129 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN--PVDILT  129 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC--hHHHHH
Confidence            87532  2 122 122  1       123444567899999984  455444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.31  E-value=0.012  Score=53.42  Aligned_cols=77  Identities=13%  Similarity=0.160  Sum_probs=50.7

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC-CCccccccCCHHHHhhcCC
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sl~ell~~aD  238 (398)
                      ..+.||+|.|.|. |.||+.+++.| ...|.+|++.+|+.....+ .        ...+. .........++.+.+..+|
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~-~--------~~~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSEL-KNKGHEPVAMVRNEEQGPE-L--------RERGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSGGGHHH-H--------HHTTCSEEEECCTTSCCGGGGTTCS
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHH-HhCCCeEEEEECChHHHHH-H--------HhCCCceEEEcccHHHHHHHHcCCC
Confidence            4689999999998 99999999998 5789999999998764221 1        11111 0000000045678889999


Q ss_pred             EEEEccCCC
Q 015895          239 VISLHPVLD  247 (398)
Q Consensus       239 iV~l~~Plt  247 (398)
                      +|+.+....
T Consensus        87 ~vi~~ag~~   95 (236)
T 3e8x_A           87 AVVFAAGSG   95 (236)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999887654

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.30  E-value=0.14  Score=49.26  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-   +......+..   ....|.   .+....+++|.+++
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~---a~~~G~---~~~~~~d~~eav~~  217 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGG-VTAGIHVTVAAPEGFLPDPSVRAAAERR---AQDTGA---SVTVTADAHAAAAG  217 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEECCTTSCCCHHHHHHHHHH---HHHHTC---CEEEESCHHHHHTT
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHH---HHHcCC---eEEEEECHHHHhcC
Confidence            4889999999986  9999999987 589999999987531   1111100100   111221   13335789999999


Q ss_pred             CCEEEEccC----C---Chh-----hhhhccHHHHhcCCCCcEEEEcC
Q 015895          237 ADVISLHPV----L---DKT-----TYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       237 aDiV~l~~P----l---t~~-----T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|+|..-.=    .   .++     ..--++++.++.+|++++|.-|.
T Consensus       218 aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          218 ADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             CCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            999976321    0   011     12336889999999999998884

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.30  E-value=0.016  Score=57.31  Aligned_cols=69  Identities=19%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEE
Q 015895          166 QTVGVIGAG-RIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (398)
Q Consensus       166 ktvGIIGlG-~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV~  241 (398)
                      .+|||||+| .+|+..++.+.+.-+.+++ ++|+++... +.+.+.+       +     ...+.+++|+++.  .|+|+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~ell~~~~vD~V~   69 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVR-ERFGKEY-------G-----IPVFATLAEMMQHVQMDAVY   69 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHH-HHHHHHH-------T-----CCEESSHHHHHHHSCCSEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHH-HHHHHHc-------C-----CCeECCHHHHHcCCCCCEEE
Confidence            479999999 9999999887433367765 678876542 2222211       2     2235789999975  99999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      +++|..
T Consensus        70 i~tp~~   75 (387)
T 3moi_A           70 IASPHQ   75 (387)
T ss_dssp             ECSCGG
T ss_pred             EcCCcH
Confidence            999953

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.29  E-value=0.021  Score=55.27  Aligned_cols=112  Identities=21%  Similarity=0.276  Sum_probs=63.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh-hhHHHHH-HhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKF-VTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..++|+|||.|.||..+|..++ ..|. +|..||+.+ ....+.. .+.... ..... .........+ .+.+++||+|
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~-~~g~~~v~l~D~~~~~~~~~g~a~dl~~~-~~~~~-~~~~i~~t~d-~~a~~~aDvV   82 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLA-QKELADVVLVDIPQLENPTKGKALDMLEA-SPVQG-FDANIIGTSD-YADTADSDVV   82 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHHHHHH-HHHHT-CCCCEEEESC-GGGGTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeccchHHHHHHhhhhHHHh-hhhcc-CCCEEEEcCC-HHHhCCCCEE
Confidence            4578999999999999999874 5677 999999984 2222211 111110 00000 0111111123 3568999999


Q ss_pred             EEccCC--Ch-hhh-hhc--c----H---HHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          241 SLHPVL--DK-TTY-HLI--N----K---ERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       241 ~l~~Pl--t~-~T~-~li--~----~---~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      +++...  .+ .|+ .++  |    +   +.+....|++++++++-  ++|.-.
T Consensus        83 Iiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN--Pvd~~t  134 (315)
T 3tl2_A           83 VITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN--PVDAMT  134 (315)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHHHH
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC--hHHHHH
Confidence            998642  22 122 222  1    1   23333468899999984  444444

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.29  E-value=0.0083  Score=60.91  Aligned_cols=75  Identities=9%  Similarity=0.133  Sum_probs=49.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-Cc--cccccCCHHHHhhcCCEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PV--TWKRASSMDEVLREADVI  240 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~sl~ell~~aDiV  240 (398)
                      .+++|+|+|.|.||+.+|+.| ...|.+|.++|++.... +...+.       .+.. ..  ......+++++++.+|+|
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L-~~~G~~V~v~~R~~~~a-~~la~~-------~~~~~~~~~Dv~d~~~l~~~l~~~DvV   72 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVL-TDSGIKVTVACRTLESA-KKLSAG-------VQHSTPISLDVNDDAALDAEVAKHDLV   72 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHH-HTTTCEEEEEESSHHHH-HHTTTT-------CTTEEEEECCTTCHHHHHHHHTTSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEECCHHHH-HHHHHh-------cCCceEEEeecCCHHHHHHHHcCCcEE
Confidence            468999999999999999998 47889999999986532 211100       0000 00  011112456778899999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      +.++|..
T Consensus        73 In~a~~~   79 (450)
T 1ff9_A           73 ISLIPYT   79 (450)
T ss_dssp             EECCC--
T ss_pred             EECCccc
Confidence            9999964

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.27  E-value=0.011  Score=57.37  Aligned_cols=121  Identities=15%  Similarity=0.215  Sum_probs=66.1

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|.+++..++. ++.-++..||...........+ +.... ... .+....  .+..+.++.||+|+++.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~d-l~~~~-~~~-~~~~v~--~~~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD-LEDAQ-AFT-APKKIY--SGEYSDCKDADLVVITA   80 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHGGG-GGS-CCCEEE--ECCGGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHH-HHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEECC
Confidence            689999999999999988743 3334899999976432111111 10000 001 111111  13356689999999998


Q ss_pred             CCChhhhh------------hcc--HHHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEE
Q 015895          245 VLDKTTYH------------LIN--KERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV  294 (398)
Q Consensus       245 Plt~~T~~------------li~--~~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gA  294 (398)
                      +... ..+            ++-  .+.+....|++++|+++-  ++|.-.  +.+.  +...++.|.
T Consensus        81 g~~~-~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           81 GAPQ-KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN--PVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC--cHHHHHHHHHHHcCCCHHHEEec
Confidence            6532 221            111  123334478999999844  444433  3333  333456565

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.24  E-value=0.0026  Score=62.77  Aligned_cols=38  Identities=26%  Similarity=0.503  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+.+++|||+|.|.+|+.+++.+ +.+|++|+++|+++.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa-~~lG~~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSA-QKMGYKVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCC
Confidence            46899999999999999999996 799999999998764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.23  E-value=0.012  Score=55.81  Aligned_cols=97  Identities=19%  Similarity=0.229  Sum_probs=58.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|+|+| +|+||+.+++.+...-++++.+ +|+..+.....  + .   ..-.+... ++....++++++.++|+|+-+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~--d-~---gel~g~~~-gv~v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ--D-A---GAFLGKQT-GVALTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTS--B-T---TTTTTCCC-SCBCBCCHHHHHHHCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccc--c-H---HHHhCCCC-CceecCCHHHHhcCCCEEEEc
Confidence            5899999 9999999999875556888776 68764321000  0 0   00011111 333357899999999999988


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      .+- ..+...+    -..++.|.-+|-.+.|
T Consensus        81 T~p-~a~~~~~----~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           81 TLP-EGTLVHL----DAALRHDVKLVIGTTG  106 (272)
T ss_dssp             SCH-HHHHHHH----HHHHHHTCEEEECCCC
T ss_pred             CCH-HHHHHHH----HHHHHcCCCEEEECCC
Confidence            752 2222222    2224556667766666

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.22  E-value=0.0073  Score=61.43  Aligned_cols=45  Identities=16%  Similarity=0.168  Sum_probs=38.7

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~  205 (398)
                      ..+++|++|.|||.|.+|...++.| ...|++|.++|+...+....
T Consensus         7 ~~~l~~~~vlVvGgG~va~~k~~~L-~~~ga~V~vi~~~~~~~~~~   51 (457)
T 1pjq_A            7 FCQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTV   51 (457)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHH
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEcCCCCHHHHH
Confidence            3578999999999999999999998 68999999999976654443

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.19  E-value=0.024  Score=55.06  Aligned_cols=69  Identities=14%  Similarity=0.265  Sum_probs=45.4

Q ss_pred             CeEEEEecChhHH-HHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEE
Q 015895          166 QTVGVIGAGRIGS-AYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~-~vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV  240 (398)
                      .+|||||+|.||+ ..++.+ +.. +++|. ++|++......   +.+       +..  +...+.+++++++.  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~a---~~~-------~~~--~~~~~~~~~~ll~~~~~D~V   69 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYV-MIRETLEVKTIFDLHVNEKAA---APF-------KEK--GVNFTADLNELLTDPEIELI   69 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECTTCCHHHH---HHH-------HTT--TCEEESCTHHHHSCTTCCEE
T ss_pred             eEEEEEccCHHHHHHHHHHH-hhCCCeEEEEEECCCHHHHHH---Hhh-------CCC--CCeEECCHHHHhcCCCCCEE
Confidence            3799999999999 566666 444 77875 77877222221   111       000  12235789999976  8999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      ++++|..
T Consensus        70 ~i~tp~~   76 (349)
T 3i23_A           70 TICTPAH   76 (349)
T ss_dssp             EECSCGG
T ss_pred             EEeCCcH
Confidence            9999953

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.19  E-value=0.015  Score=55.55  Aligned_cols=104  Identities=16%  Similarity=0.103  Sum_probs=66.3

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV  240 (398)
                      .++|.|+|. |++|+.+++.+ +..|.+++ ..+|....                 ....+...+.+++|+.+  ..|++
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l-~~~g~~~v~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~~~Dv~   68 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQM-LTYGTKIVAGVTPGKGG-----------------MEVLGVPVYDTVKEAVAHHEVDAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHSCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHH-HHcCCeEEEEECCCCCC-----------------ceECCEEeeCCHHHHhhcCCCCEE
Confidence            357999999 99999999987 56788743 56664310                 00112333568999988  89999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcE-EEEcCCCc-hhcHHHHHHHHhcCCc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAI-LVNCSRGP-VIDEVALVEHLKQNPM  291 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gai-lIN~aRG~-~vde~aL~~aL~~g~i  291 (398)
                      ++++|. +.+...+.+ ..+   .|.- +|..+.|= .-+++.|.++.++..+
T Consensus        69 Ii~vp~-~~~~~~~~e-a~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi  116 (288)
T 1oi7_A           69 IIFVPA-PAAADAALE-AAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGS  116 (288)
T ss_dssp             EECCCH-HHHHHHHHH-HHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecCH-HHHHHHHHH-HHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            999994 334444432 222   2322 55566552 3345678888876554

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.17  E-value=0.012  Score=57.12  Aligned_cols=122  Identities=17%  Similarity=0.223  Sum_probs=66.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .++|+|||.|.+|..++..++. .+.-++..||...........+ +.... ... .+....  .+..+.++.||+|+++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~d-l~~~~-~~~-~~~~i~--~~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAID-LSNAL-PFT-SPKKIY--SAEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-HHTTG-GGS-CCCEEE--ECCGGGGGGCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHH-HHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEEc
Confidence            3689999999999999988742 3334899999976432111111 10000 001 111111  1345668999999999


Q ss_pred             cCCChhhhhh-----c--cH-------HHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEE
Q 015895          244 PVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV  294 (398)
Q Consensus       244 ~Plt~~T~~l-----i--~~-------~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gA  294 (398)
                      .+... ..++     +  |.       +.+....|++++|+++  .++|.-.  +.+.  +...++.|.
T Consensus        84 ag~~~-k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           84 AGAPQ-KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CcHHHHHHHHHHHcCCCHHHEEEc
Confidence            86432 2211     1  11       1233336899999984  4454433  3333  333356555

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.16  E-value=0.018  Score=57.02  Aligned_cols=73  Identities=12%  Similarity=0.146  Sum_probs=49.0

Q ss_pred             CCeEEEEecCh---hHHHHHHHHHhcCCcEEE--EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---
Q 015895          165 GQTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---  236 (398)
Q Consensus       165 gktvGIIGlG~---IG~~vA~~la~~fG~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---  236 (398)
                      -.+|||||+|.   ||+.-+..++..-+.+++  ++|+++... +.+.+.       .+...  ...+.+++++++.   
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~-------~g~~~--~~~~~~~~~ll~~~~~   81 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRG-SAFGEQ-------LGVDS--ERCYADYLSMFEQEAR   81 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHH-HHHHHH-------TTCCG--GGBCSSHHHHHHHHTT
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHH-HHHHHH-------hCCCc--ceeeCCHHHHHhcccc
Confidence            35899999999   999988876333347776  479887542 222222       12110  1235789999975   


Q ss_pred             ----CCEEEEccCCC
Q 015895          237 ----ADVISLHPVLD  247 (398)
Q Consensus       237 ----aDiV~l~~Plt  247 (398)
                          .|+|++++|..
T Consensus        82 ~~~~vD~V~i~tp~~   96 (398)
T 3dty_A           82 RADGIQAVSIATPNG   96 (398)
T ss_dssp             CTTCCSEEEEESCGG
T ss_pred             cCCCCCEEEECCCcH
Confidence                99999999954

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.14  E-value=0.022  Score=55.70  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhh-hhhhh--cC--CCCccccccCCHHHHhhcCCEE
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYG-QFLKA--NG--EQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      +|||+|+|+||+.+++.+...-++++.+ .|+++... .......+ .....  ..  ....+.....+++++++++|+|
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~-~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE-AFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH-HHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHH-HHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            7999999999999999874333677654 45543221 11111000 00000  00  0000011123566777889999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999954

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.13  E-value=0.036  Score=53.86  Aligned_cols=107  Identities=17%  Similarity=0.284  Sum_probs=60.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ...++|+|||.|.+|..+|..++ ..|. +|..||...........+.... ....+ .+.......+. +.++.||+|+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~-~~~~~~v~L~Di~~~~~~g~~~dl~~~-~~~~~-~~~~v~~t~d~-~a~~~aDiVI   80 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAG-LKELGDVVLFDIAEGTPQGKGLDIAES-SPVDG-FDAKFTGANDY-AAIEGADVVI   80 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHHHHHH-HHHHT-CCCCEEEESSG-GGGTTCSEEE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCchhHHHHHHHHhch-hhhcC-CCCEEEEeCCH-HHHCCCCEEE
Confidence            34678999999999999999874 4555 9999999875321111110000 00000 01112212344 6789999999


Q ss_pred             EccCCC--h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCC
Q 015895          242 LHPVLD--K-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Plt--~-~T~-~li--~~-------~~~~~mk~gailIN~aR  273 (398)
                      ++.+..  + .|+ .++  |.       +.+....|++++++++-
T Consensus        81 iaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           81 VTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             ECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            987532  1 121 122  11       12333458899999985

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.13  E-value=0.034  Score=53.91  Aligned_cols=112  Identities=16%  Similarity=0.253  Sum_probs=62.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..++|+|||.|.||..+|..++ ..|. +|..+|...........+... .....+ .........+ .+.++.||+|++
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~-~~~~~~v~l~Di~~~~~~g~a~dL~~-~~~~~~-~~~~v~~t~d-~~a~~~aDvVIi   79 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLAL-IKQLGDVVLFDIAQGMPNGKALDLLQ-TCPIEG-VDFKVRGTND-YKDLENSDVVIV   79 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHHHHT-THHHHT-CCCCEEEESC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCChHHHHHHHHHHHh-hhhhcC-CCcEEEEcCC-HHHHCCCCEEEE
Confidence            3578999999999999999874 3444 999999987532111111000 000000 0111211133 467899999999


Q ss_pred             ccCCC--h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          243 HPVLD--K-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       243 ~~Plt--~-~T~-~li--~~-------~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      +.+..  + .|+ .++  |.       +.+....|++++++++  .++|.-.
T Consensus        80 ~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t  129 (321)
T 3p7m_A           80 TAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMV  129 (321)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             cCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHH
Confidence            86532  1 121 122  11       1233345889999995  4555544

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.12  E-value=0.01  Score=57.92  Aligned_cols=103  Identities=20%  Similarity=0.186  Sum_probs=55.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEE-cC-ChhhHHHHHHhhhhhhhhhc-CC------------CCccccccCCH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL-YQATRLEKFVTAYGQFLKAN-GE------------QPVTWKRASSM  230 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~-~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~sl  230 (398)
                      .+|||+|+|+||+.++|.+...-+++|.+. |+ ........ ...|.+..... +.            ....+....++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~-l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~   82 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVY-MFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   82 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHH-HHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH-HhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence            379999999999999998744446787655 43 22222221 11111100000 00            00001112356


Q ss_pred             HHH-h--hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          231 DEV-L--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       231 ~el-l--~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      +++ +  ..+|+|+.|+|.... +    +..-..++.|+..|.++-.
T Consensus        83 ~~l~~~~~~vDvV~eatg~~~~-~----e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           83 SKIKWGDAGAEYVVESTGVFTT-M----EKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GGCCTTTTTCCEEEECSSSCCS-H----HHHGGGGGGTCSEEEESSC
T ss_pred             HHCccccCCCCEEEECCCchhh-H----HHHHHHHhCCCeEEEeccC
Confidence            665 2  579999999995322 2    1233445678777776654

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.12  E-value=0.25  Score=47.46  Aligned_cols=93  Identities=23%  Similarity=0.314  Sum_probs=65.9

Q ss_pred             ccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+.|++|+++|=|   ++..+.+..+ ..||++|.+..|..-.              . .....+  ...+++|.++++|
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~--------------~-~~~~~g--~~~d~~eav~~aD  205 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQ--------------D-EENTFG--TYVSMDEAVESSD  205 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGS--------------C-TTCSSC--EECCHHHHHHHCS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHH-HHcCCEEEEECCCccC--------------c-chhhcC--ccCCHHHHhCCCC
Confidence            4889999999975   6999999987 5899999998874211              0 001111  2358999999999


Q ss_pred             EEEEccCCCh---------h--hhhhccHHHHhcCCCCcEEEEcC
Q 015895          239 VISLHPVLDK---------T--TYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       239 iV~l~~Plt~---------~--T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|..-.-..+         +  ..--++.+.++.+|++++|.-|.
T Consensus       206 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          206 VVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             EEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             EEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence            9976421111         1  11236889999999999998884

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.12  E-value=0.023  Score=55.62  Aligned_cols=114  Identities=21%  Similarity=0.248  Sum_probs=64.6

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      +.+++|+|||. |.||+.+|..+ ..+|  .+|..+|...........+     +.+............+..+.+++||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l-~~~g~~~evvLiDi~~~k~~g~a~D-----L~~~~~~~~~i~~t~d~~~al~dADv   79 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTA-AMMRLTPNLCLYDPFAVGLEGVAEE-----IRHCGFEGLNLTFTSDIKEALTDAKY   79 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHH-HHTTCCSCEEEECSCHHHHHHHHHH-----HHHHCCTTCCCEEESCHHHHHTTEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHH-HhcCCCCEEEEEeCCchhHHHHHHh-----hhhCcCCCCceEEcCCHHHHhCCCCE
Confidence            45789999998 99999999776 3555  4899999876432111111     11111111112223578888999999


Q ss_pred             EEEccCC--Ch-hhh-hhc--cH-------HHHhcCCCCc-EEEEcCCCchhcHHHHHH
Q 015895          240 ISLHPVL--DK-TTY-HLI--NK-------ERLATMKKEA-ILVNCSRGPVIDEVALVE  284 (398)
Q Consensus       240 V~l~~Pl--t~-~T~-~li--~~-------~~~~~mk~ga-ilIN~aRG~~vde~aL~~  284 (398)
                      |+++...  .+ +++ .++  |.       +.+....+++ ++++++  .++|.-..+.
T Consensus        80 VvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i~  136 (343)
T 3fi9_A           80 IVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLVT  136 (343)
T ss_dssp             EEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHHH
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHHH
Confidence            9998632  11 112 112  11       1233334677 488886  4566655443

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.10  E-value=0.025  Score=54.68  Aligned_cols=69  Identities=12%  Similarity=0.168  Sum_probs=46.5

Q ss_pred             eEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEEEE
Q 015895          167 TVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (398)
Q Consensus       167 tvGIIGlG~IG~~-vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV~l  242 (398)
                      ++||||+|.||+. .+..+...-+.+|. ++|+++.. .+.+.+.|       +..    ..+.+++|+++.  .|+|++
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~-------g~~----~~y~d~~ell~~~~iDaV~I   92 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTR-AREMADRF-------SVP----HAFGSYEEMLASDVIDAVYI   92 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHH-HHHHHHHH-------TCS----EEESSHHHHHHCSSCSEEEE
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHc-------CCC----eeeCCHHHHhcCCCCCEEEE
Confidence            7999999999986 46665333477876 67887654 23332222       211    134789999964  799999


Q ss_pred             ccCCC
Q 015895          243 HPVLD  247 (398)
Q Consensus       243 ~~Plt  247 (398)
                      ++|..
T Consensus        93 ~tP~~   97 (350)
T 4had_A           93 PLPTS   97 (350)
T ss_dssp             CSCGG
T ss_pred             eCCCc
Confidence            99953

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.09  E-value=0.034  Score=56.48  Aligned_cols=127  Identities=14%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             CCeEEEEecChh-HHHHHHHHHh---cC-CcEEEEEcCCh--hhHHHHHHhhhhhhh-hhcCCCCccccccCCHHHHhhc
Q 015895          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQ--ATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       165 gktvGIIGlG~I-G~~vA~~la~---~f-G~~V~~~d~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      .++|+|||.|.. |..++..|++   .+ +.+|..||+..  ... +...+ ....+ ...+ .+..+....++.+.++.
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~-~~~~~-~~~~~~~~~~-~~~~i~~t~D~~eal~g   83 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKL-EIVGA-LAKRMVEKAG-VPIEIHLTLDRRRALDG   83 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHH-HHHHH-HHHHHHHHTT-CCCEEEEESCHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHH-HHHHH-HHHHHHhhcC-CCcEEEEeCCHHHHhCC
Confidence            358999999999 8887665543   45 66899999987  431 11111 11111 1111 12223333578888999


Q ss_pred             CCEEEEccCCChh---hh----------------------------hhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHH
Q 015895          237 ADVISLHPVLDKT---TY----------------------------HLIN--KERLATMKKEAILVNCSRGPVIDEVALV  283 (398)
Q Consensus       237 aDiV~l~~Plt~~---T~----------------------------~li~--~~~~~~mk~gailIN~aRG~~vde~aL~  283 (398)
                      ||+|++++|....   ++                            .++-  .+.+....|++++||.+-.-=+-+.++.
T Consensus        84 AD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~  163 (450)
T 1s6y_A           84 ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVL  163 (450)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHH
T ss_pred             CCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Confidence            9999999995321   11                            0110  1234445689999999876545555555


Q ss_pred             HHHhcCCccEE
Q 015895          284 EHLKQNPMFRV  294 (398)
Q Consensus       284 ~aL~~g~i~gA  294 (398)
                      +.....++.|.
T Consensus       164 k~~p~~rViG~  174 (450)
T 1s6y_A          164 RYTKQEKVVGL  174 (450)
T ss_dssp             HHCCCCCEEEC
T ss_pred             HhCCCCCEEEe
Confidence            54433355554

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.09  E-value=0.58  Score=45.28  Aligned_cols=104  Identities=14%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.|++|++||= +++..+.+..+ ..+|++|.+..|..   ++......+..   .+..|   ..+....+++|.++++
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~---a~~~g---~~v~~~~d~~eav~~a  226 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGC-AKVGMSIAVATPEGFTPDPAVSARASEI---AGRTG---AEVQILRDPFEAARGA  226 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHH---HHHHT---CCEEEESCHHHHHTTC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHH---HHHcC---CeEEEECCHHHHhcCC
Confidence            488999999996 67888888776 57899999987743   11111100000   01112   1233456899999999


Q ss_pred             CEEEEccCCC----h---hh-----hhhccHHHHhcCCCCcEEEEcC
Q 015895          238 DVISLHPVLD----K---TT-----YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       238 DiV~l~~Plt----~---~T-----~~li~~~~~~~mk~gailIN~a  272 (398)
                      |+|..-.=..    .   +-     .--++.+.++.+|++++|.-|.
T Consensus       227 Dvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          227 HILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             SEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             CEEEEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            9996543111    0   00     1236889999999999998874

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.08  E-value=0.18  Score=49.64  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=90.1

Q ss_pred             ceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (398)
Q Consensus        88 k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt  167 (398)
                      ..|...+-+-..+. +.+.--+|+|.|.-+...-++  .+++=++.+.++                     .| .+.|++
T Consensus       128 D~IviR~~~~~~~~-~lA~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~---------------------~G-~l~glk  182 (365)
T 4amu_A          128 DGIEFRGFAQSDVD-ALVKYSGVPVWNGLTDDEHPT--QIIADFMTMKEK---------------------FG-NLKNKK  182 (365)
T ss_dssp             SEEEEECSCHHHHH-HHHHHHCSCEEEEECSSCCHH--HHHHHHHHHHHH---------------------HS-SCTTCE
T ss_pred             cEEEEecCChhHHH-HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHH---------------------hC-CCCCCE
Confidence            45555543332232 334556899999865332222  222222232221                     11 388999


Q ss_pred             EEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhH--HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          168 VGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       168 vGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      |+++|=|  ++..+.+..+ ..||++|.+..|..-.-  .+.+.+.........|   ..+....+++|.+++||+|..-
T Consensus       183 va~vGD~~nnva~Sl~~~~-~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g---~~i~~~~d~~eav~~aDVVytd  258 (365)
T 4amu_A          183 IVFIGDYKNNVGVSTMIGA-AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG---GSLRFSTDKILAAQDADVIYTD  258 (365)
T ss_dssp             EEEESSTTSHHHHHHHHHH-HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS---CEEEEESCHHHHTTTCSEEEEC
T ss_pred             EEEECCCCcchHHHHHHHH-HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC---CEEEEECCHHHHhcCCCEEEec
Confidence            9999988  7888888886 58999999998743110  0111110000011112   1233456899999999999863


Q ss_pred             ----cCCChh---hh------hhccHHHHhcCCCCcEEEEcC
Q 015895          244 ----PVLDKT---TY------HLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       244 ----~Plt~~---T~------~li~~~~~~~mk~gailIN~a  272 (398)
                          +....+   .+      --++.+.++.+|++++|.-|.
T Consensus       259 ~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          259 VWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             CSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             ccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence                221111   01      226889999999999998874

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.07  E-value=0.13  Score=50.09  Aligned_cols=153  Identities=16%  Similarity=0.106  Sum_probs=88.4

Q ss_pred             ceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (398)
Q Consensus        88 k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt  167 (398)
                      .+|+.+.-.-..+. +.+..-+|+|.|.-+...-++  .+++=++.+.+++                     | .+.|++
T Consensus       127 D~IviR~~~~~~~~-~lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~---------------------G-~l~glk  181 (340)
T 4ep1_A          127 DGIMIRTFSHADVE-ELAKESSIPVINGLTDDHHPC--QALADLMTIYEET---------------------N-TFKGIK  181 (340)
T ss_dssp             SEEEEECSCHHHHH-HHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCE
T ss_pred             CEEEEecCChhHHH-HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------------------C-CCCCCE
Confidence            45555543322222 334556799999765432221  2333233333311                     1 388999


Q ss_pred             EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       168 vGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      |++||= +++..+.+..+ ..||++|.+..|..   ++......+.+   .+..|   ..+....+++|.+++||+|..-
T Consensus       182 va~vGD~~nva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~---a~~~G---~~v~~~~d~~eav~~aDVvyt~  254 (340)
T 4ep1_A          182 LAYVGDGNNVCHSLLLAS-AKVGMHMTVATPVGYRPNEEIVKKALAI---AKETG---AEIEILHNPELAVNEADFIYTD  254 (340)
T ss_dssp             EEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHH---HHHHC---CCEEEESCHHHHHTTCSEEEEC
T ss_pred             EEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHH---HHHcC---CeEEEECCHHHHhCCCCEEEec
Confidence            999996 57778888776 57899999987742   11111101000   01112   1133456899999999999654


Q ss_pred             cCCC----h--hh-----hhhccHHHHhcCCCCcEEEEcC
Q 015895          244 PVLD----K--TT-----YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       244 ~Plt----~--~T-----~~li~~~~~~~mk~gailIN~a  272 (398)
                      .=..    .  +.     .--++.+.++.+|++++|.-|.
T Consensus       255 ~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          255 VWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             CC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             CccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            3211    0  10     1236889999999999999886

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.03  E-value=0.014  Score=57.08  Aligned_cols=127  Identities=16%  Similarity=0.180  Sum_probs=76.6

Q ss_pred             chHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (398)
Q Consensus       121 ~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~  199 (398)
                      ...||.++-+=|-+.|             |..|...  ....|++++|.|||+|.+|..+|+.|+ ..|. ++..+|+..
T Consensus         5 ~~~~~~~~~lnl~lm~-------------wRll~~~--g~~kL~~~~VlIvGaGGlGs~va~~La-~aGVg~ItlvD~D~   68 (340)
T 3rui_A            5 LKIADQSVDLNLKLMK-------------WRILPDL--NLDIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGT   68 (340)
T ss_dssp             HHHHHHHHHHHHHHHH-------------HHTCTTC--CHHHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCCB
T ss_pred             HHHHHHHHHHHHHHHH-------------Hhhcchh--hHHHHhCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEecCCE
Confidence            4567777766665555             2223211  124689999999999999999999985 6675 788888743


Q ss_pred             h------------------hHHHHHHhhhhhhhhhcCCCCccccc---------------------cCCHHHHhhcCCEE
Q 015895          200 A------------------TRLEKFVTAYGQFLKANGEQPVTWKR---------------------ASSMDEVLREADVI  240 (398)
Q Consensus       200 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~sl~ell~~aDiV  240 (398)
                      -                  .+.+..    ...+..... ...+..                     ...+.++++++|+|
T Consensus        69 Ve~SNL~RQ~l~~~~diG~~Ka~aa----a~~L~~inP-~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlV  143 (340)
T 3rui_A           69 VSYSNPVRQALYNFEDCGKPKAELA----AASLKRIFP-LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDII  143 (340)
T ss_dssp             CCTTSTTTSTTCCGGGTTSBHHHHH----HHHHHHHCT-TCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEE
T ss_pred             eccccccccccCChhhcChHHHHHH----HHHHHHhCC-CCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEE
Confidence            0                  011100    011111110 000100                     11356788999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +.++- +.+++.++++.....   +..+|+.+
T Consensus       144 vd~tD-n~~tR~lin~~c~~~---~~plI~aa  171 (340)
T 3rui_A          144 FLLVD-SRESRWLPSLLSNIE---NKTVINAA  171 (340)
T ss_dssp             EECCS-STGGGHHHHHHHHHT---TCEEEEEE
T ss_pred             EecCC-CHHHHHHHHHHHHHc---CCcEEEee
Confidence            99886 567899888766653   44677754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.03  E-value=0.012  Score=54.89  Aligned_cols=103  Identities=21%  Similarity=0.204  Sum_probs=64.2

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChh------------------hHHHHHHhhhhhhhhhcCC-C
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGE-Q  220 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~-~  220 (398)
                      ..|++++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-                  .+.+...    ..+.+... .
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La-~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~----~~l~~~np~~   98 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLA-GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ----QRLTQLNPDI   98 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHH-HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHH----HHHHHHCTTS
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHH-HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHH----HHHHHHCCCC
Confidence            4689999999999999999999984 6775 7888876531                  0111000    11111110 0


Q ss_pred             Ccccc----ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          221 PVTWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       221 ~~~~~----~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      .....    ...+++++++++|+|+.++. +.+++.++++.....   +..+|..+
T Consensus        99 ~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1           99 QLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             EEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             EEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence            00000    01235678899999999987 678888888876653   33456543

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.02  E-value=0.028  Score=56.87  Aligned_cols=117  Identities=17%  Similarity=0.274  Sum_probs=69.8

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCC---------hhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      |.++.|++|.|.|+|++|+.+|+.| ...|++|+ +.|.+         ....+..+.+..+ .+.   ..+ +. ...+
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L-~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g-~i~---~y~-~a-~~i~  302 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAF-HDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFG-GVR---GYP-KA-EPLP  302 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTS-SST---TCT-TS-EECC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHH-HHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcC-Ccc---cCC-Cc-eEcC
Confidence            3479999999999999999999998 68999998 44442         1122222211111 000   000 01 1224


Q ss_pred             HHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       230 l~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      .++++ ..||+++-|..     .+.|+.+....++ -.+++-.+-+.+- .++ .+.|.+..+
T Consensus       303 ~~ei~~~~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI  357 (440)
T 3aog_A          303 AADFWGLPVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGV  357 (440)
T ss_dssp             HHHHTTCCCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTC
T ss_pred             chhhhcCCCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCC
Confidence            56665 47999998865     3456666666663 5577777877764 333 234444443

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.02  E-value=0.011  Score=57.84  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=24.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhc--CCcEEEEEcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--fG~~V~~~d~  197 (398)
                      .+|||+|+|+||+.+.|.|...  =+++|.+.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            3799999999999999987433  3578776644

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.02  E-value=0.05  Score=52.63  Aligned_cols=68  Identities=16%  Similarity=0.256  Sum_probs=47.9

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhcC--CcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCE
Q 015895          166 QTVGVIGAG-RIGSAYARMMVEGF--KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (398)
Q Consensus       166 ktvGIIGlG-~IG~~vA~~la~~f--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDi  239 (398)
                      .+|||||+| .+|+..++.+ +..  +.++ .++|+++... +.+.+.+       +.    ...+.+++++++  +.|+
T Consensus        19 irvgiIG~G~~~g~~~~~~l-~~~~~~~~lvav~d~~~~~~-~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~   85 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMV-------GN----PAVFDSYEELLESGLVDA   85 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHH-------SS----CEEESCHHHHHHSSCCSE
T ss_pred             eeEEEEecCHHHHHHHHHHH-HhCCCceEEEEEEcCCHHHH-HHHHHHh-------CC----CcccCCHHHHhcCCCCCE
Confidence            479999999 8999999887 455  5776 5788876542 2222222       21    123578999986  5899


Q ss_pred             EEEccCC
Q 015895          240 ISLHPVL  246 (398)
Q Consensus       240 V~l~~Pl  246 (398)
                      |++++|.
T Consensus        86 V~i~tp~   92 (340)
T 1zh8_A           86 VDLTLPV   92 (340)
T ss_dssp             EEECCCG
T ss_pred             EEEeCCc
Confidence            9999995

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.01  E-value=0.0041  Score=57.08  Aligned_cols=68  Identities=15%  Similarity=0.245  Sum_probs=42.4

Q ss_pred             CeEEEEecChhHHHHHHH-HHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~-la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++++|||.|++|+.+|+. .....|+++. ++|.++...-.           ..  ...++....++++++++.|+++++
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~-----------~i--~gv~V~~~~dl~eli~~~D~ViIA  152 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGT-----------EV--GGVPVYNLDDLEQHVKDESVAILT  152 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTC-----------EE--TTEEEEEGGGHHHHCSSCCEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHh-----------Hh--cCCeeechhhHHHHHHhCCEEEEe
Confidence            369999999999999993 2135577655 66776643110           00  112222346789998777999999


Q ss_pred             cCC
Q 015895          244 PVL  246 (398)
Q Consensus       244 ~Pl  246 (398)
                      +|.
T Consensus       153 vPs  155 (215)
T 2vt3_A          153 VPA  155 (215)
T ss_dssp             SCH
T ss_pred             cCc
Confidence            994

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.01  E-value=0.15  Score=49.69  Aligned_cols=107  Identities=13%  Similarity=0.171  Sum_probs=69.5

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-.-.+.+.+......+..|   ..+....+++|.++++|+
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  227 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF  227 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CcCCeEEEEecCCccchHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCE
Confidence            5899999999996  9999999987 589999999987532100111100000001122   113335789999999999


Q ss_pred             EEEccC----CC----hh-----hhhhccHHHHhcC-CCCcEEEEcC
Q 015895          240 ISLHPV----LD----KT-----TYHLINKERLATM-KKEAILVNCS  272 (398)
Q Consensus       240 V~l~~P----lt----~~-----T~~li~~~~~~~m-k~gailIN~a  272 (398)
                      |..-.=    ..    .+     ..--++.+.++.+ |++++|.-|.
T Consensus       228 vytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          228 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence            976322    10    11     1124689999999 9999999884

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=95.99  E-value=0.2  Score=48.11  Aligned_cols=100  Identities=16%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.|++|+++|=   |++..+.+..+ ..| |++|.+..|..-.-.+..       ++..|   ..+....+++|.++++
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~-------~~~~g---~~~~~~~d~~eav~~a  214 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEI-------LDELN---YPVKEVENPFEVINEV  214 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHH-------HTTCC---SCEEEESCGGGTGGGC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCchhcCCHHH-------HHHcC---CeEEEeCCHHHHhcCC
Confidence            488999999998   59999999986 688 999999987432100110       11112   1233346899999999


Q ss_pred             CEEEEccCCCh-----hh------hhhccHHHHhcCCCCcEEEEcC
Q 015895          238 DVISLHPVLDK-----TT------YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       238 DiV~l~~Plt~-----~T------~~li~~~~~~~mk~gailIN~a  272 (398)
                      |+|..-.=..+     +.      .--++++.++.+|++++|.-|.
T Consensus       215 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          215 DVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             SEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             CEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence            99965433221     11      1235888999999999998874

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.96  E-value=0.031  Score=55.89  Aligned_cols=73  Identities=15%  Similarity=0.160  Sum_probs=47.8

Q ss_pred             CeEEEEecCh---hHHHHHHHHHhcCCcEEE--EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc----
Q 015895          166 QTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----  236 (398)
Q Consensus       166 ktvGIIGlG~---IG~~vA~~la~~fG~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~----  236 (398)
                      .+|||||+|.   ||+..+..+...-+.+++  ++|+++... +.+.+.+       +...  ...+.+++++++.    
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~~  107 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKA-EASGREL-------GLDP--SRVYSDFKEMAIREAKL  107 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHH-HHHHHHH-------TCCG--GGBCSCHHHHHHHHHHC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHH-HHHHHHc-------CCCc--ccccCCHHHHHhccccc
Confidence            4899999999   999988876333346765  568887542 2222222       2110  1235789999976    


Q ss_pred             ---CCEEEEccCCCh
Q 015895          237 ---ADVISLHPVLDK  248 (398)
Q Consensus       237 ---aDiV~l~~Plt~  248 (398)
                         .|+|++++|...
T Consensus       108 ~~~vD~V~I~tp~~~  122 (417)
T 3v5n_A          108 KNGIEAVAIVTPNHV  122 (417)
T ss_dssp             TTCCSEEEECSCTTS
T ss_pred             CCCCcEEEECCCcHH
Confidence               999999999643

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.96  E-value=0.49  Score=45.90  Aligned_cols=144  Identities=14%  Similarity=0.088  Sum_probs=84.8

Q ss_pred             hhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC--hhHHHHHH
Q 015895          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (398)
Q Consensus       105 ~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~  182 (398)
                      +..-+|+|.|.-.....++  .+++=++.+.+++..      .+    +     .+..+.|++|+++|=|  ++..+.+.
T Consensus       118 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~g~------~~----~-----~~~~l~gl~va~vGD~~~~va~Sl~~  180 (328)
T 3grf_A          118 AQHASVPCINALDDFGHPL--QMVCDFMTIKEKFTA------AG----E-----FSNGFKGIKFAYCGDSMNNVTYDLMR  180 (328)
T ss_dssp             HHHCSSCEEESSCSSCCHH--HHHHHHHHHHHHHHH------TT----C-----CTTTGGGCCEEEESCCSSHHHHHHHH
T ss_pred             HHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhCC------cc----c-----cccccCCcEEEEeCCCCcchHHHHHH
Confidence            4456799999866533222  233333343333210      00    1     1135899999999986  88888888


Q ss_pred             HHHhcCCcEEEEEcCChhh-----HHHHHHhhhhhhhhh--cCCCCccccccCCHHHHhhcCCEEEEc----cC-CCh--
Q 015895          183 MMVEGFKMNLIYYDLYQAT-----RLEKFVTAYGQFLKA--NGEQPVTWKRASSMDEVLREADVISLH----PV-LDK--  248 (398)
Q Consensus       183 ~la~~fG~~V~~~d~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~sl~ell~~aDiV~l~----~P-lt~--  248 (398)
                      .+ ..||++|.+..|..-.     ......+.+   ...  .|   ..+....+++|.++++|+|..-    +. ..+  
T Consensus       181 ~~-~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~---~~~~~~g---~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~  253 (328)
T 3grf_A          181 GC-ALLGMECHVCCPDHKDFKPIKEVIDECEEI---IAKHGTG---GSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQK  253 (328)
T ss_dssp             HH-HHHTCEEEEECCSSGGGSCCHHHHHHHHHH---HHHHTCC---CEEEEESSHHHHHTTCSEEEECCCC--------C
T ss_pred             HH-HHcCCEEEEECChHhhhCCCHHHHHHHHHH---HhhccCC---CeEEEEcCHHHHhcCCCEEEecCccccCCcHHHH
Confidence            76 5789999998875321     111101110   011  12   2233457899999999999752    22 111  


Q ss_pred             -h-----hhhhccHHHHhcCCCCcEEEEcC
Q 015895          249 -T-----TYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       249 -~-----T~~li~~~~~~~mk~gailIN~a  272 (398)
                       +     ..--++++.++.+|++++|.-|.
T Consensus       254 ~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          254 EARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             CTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             HHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence             1     01236889999999999999884

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.94  E-value=0.02  Score=57.70  Aligned_cols=70  Identities=11%  Similarity=0.108  Sum_probs=48.6

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhcC--CcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--c
Q 015895          166 QTVGVIGA----GRIGSAYARMMVEGF--KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  236 (398)
Q Consensus       166 ktvGIIGl----G~IG~~vA~~la~~f--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~  236 (398)
                      .+|||||+    |.||+..++.+ +..  ++++ .++|+++... +.+.+.+       +...  ...+.+++++++  +
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l-~~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~   89 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAI-LQLSSQFQITALYSPKIETS-IATIQRL-------KLSN--ATAFPTLESFASSST   89 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHH-HHTTTTEEEEEEECSSHHHH-HHHHHHT-------TCTT--CEEESSHHHHHHCSS
T ss_pred             CEEEEEcccCCCChHHHHHHHHH-HhcCCCeEEEEEEeCCHHHH-HHHHHHc-------CCCc--ceeeCCHHHHhcCCC
Confidence            57999999    99999999988 455  7776 5788876542 2222221       2110  123468999997  6


Q ss_pred             CCEEEEccCC
Q 015895          237 ADVISLHPVL  246 (398)
Q Consensus       237 aDiV~l~~Pl  246 (398)
                      .|+|++++|.
T Consensus        90 vD~V~i~tp~   99 (438)
T 3btv_A           90 IDMIVIAIQV   99 (438)
T ss_dssp             CSEEEECSCH
T ss_pred             CCEEEEeCCc
Confidence            8999999994

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=95.89  E-value=0.77  Score=44.98  Aligned_cols=103  Identities=11%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.|++|++||= +++..+.+..+ ..||++|.+..|..-   +......+.+   ....|   ..+....+++ .++++
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~---a~~~G---~~v~~~~d~~-av~~a  221 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKN---CEVSG---GSFLVTDDAS-SVEGA  221 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHH---HHHHS---CEEEEECCGG-GGTTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHH---HHHcC---CeEEEECCHH-HHcCC
Confidence            588999999996 67888888876 589999999887431   1111100000   01112   1233346888 99999


Q ss_pred             CEEEEcc----CCC----hhh------hhhccHHHHhcCCCCcEEEEcC
Q 015895          238 DVISLHP----VLD----KTT------YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       238 DiV~l~~----Plt----~~T------~~li~~~~~~~mk~gailIN~a  272 (398)
                      |+|..-+    ...    .+-      .--++.+.++.+|++++|.-|.
T Consensus       222 DVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          222 DFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             SEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             CEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            9998632    110    110      1235788888888898888874

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.87  E-value=0.013  Score=59.38  Aligned_cols=117  Identities=19%  Similarity=0.149  Sum_probs=70.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc-C
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-A  237 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~-a  237 (398)
                      ++.||+|.|||+|..|.++|+.| ...|++|.++|....   +..+.        ++..|.   .+..-...++++.. +
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l-~~~G~~V~~~D~~~~~~~~~~~~--------L~~~gi---~~~~g~~~~~~~~~~~   73 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLL-AKLGAIVTVNDGKPFDENPTAQS--------LLEEGI---KVVCGSHPLELLDEDF   73 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHH-HHTTCEEEEEESSCGGGCHHHHH--------HHHTTC---EEEESCCCGGGGGSCE
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEeCCcccCChHHHH--------HHhCCC---EEEECCChHHhhcCCC
Confidence            57899999999999999999987 689999999998642   11111        222332   12111223456666 8


Q ss_pred             CEEEEccCCChhhhh----------hccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          238 DVISLHPVLDKTTYH----------LINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       238 DiV~l~~Plt~~T~~----------li~~-~~~~~-mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      |+|++..-..++...          ++.+ +.+.. ++...+-|-=+.|..--..=+...|+...
T Consensus        74 d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           74 CYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             EEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            999876332222111          3333 33433 34334445556787776666677776543

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.86  E-value=0.047  Score=55.76  Aligned_cols=109  Identities=10%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhcC--CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--c
Q 015895          166 QTVGVIGA----GRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  236 (398)
Q Consensus       166 ktvGIIGl----G~IG~~vA~~la~~f--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~  236 (398)
                      .+|||||+    |.||+..++.+ +..  +.+++ ++|+++... +.+.+.+       +...  ...+.+++++++  +
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l-~~~~~~~~lvav~d~~~~~a-~~~a~~~-------g~~~--~~~~~d~~ell~~~~  108 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAI-QQLSSQFQIVALYNPTLKSS-LQTIEQL-------QLKH--ATGFDSLESFAQYKD  108 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHH-HHTTTTEEEEEEECSCHHHH-HHHHHHT-------TCTT--CEEESCHHHHHHCTT
T ss_pred             CEEEEEcccCCCCHHHHHHHHHH-HhcCCCeEEEEEEeCCHHHH-HHHHHHc-------CCCc--ceeeCCHHHHhcCCC
Confidence            57999999    99999999988 454  77764 788876532 2222221       2110  123578999996  6


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCC-------cEEEEc-CCCchhcHHHHHHHHhcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKE-------AILVNC-SRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~g-------ailIN~-aRG~~vde~aL~~aL~~g~  290 (398)
                      .|+|++++|....  .   +-..+.++.|       .+++.- ---.+-+.++|+++.++..
T Consensus       109 vD~V~I~tp~~~H--~---~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g  165 (479)
T 2nvw_A          109 IDMIVVSVKVPEH--Y---EVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA  165 (479)
T ss_dssp             CSEEEECSCHHHH--H---HHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred             CCEEEEcCCcHHH--H---HHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence            8999999994322  1   1122233334       356553 1223445556666666543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.85  E-value=0.014  Score=57.15  Aligned_cols=95  Identities=14%  Similarity=0.185  Sum_probs=63.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHHhhcCCEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~ell~~aDiV  240 (398)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++..... ...       +..|.... . ...+   +.++....|+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~-~~~-------~~lGa~~v-~-~~~~~~~~~~~~~~~D~v  255 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVISTSPSKKE-EAL-------KNFGADSF-L-VSRDQEQMQAAAGTLDGI  255 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGHH-HHH-------HTSCCSEE-E-ETTCHHHHHHTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHH-------HhcCCceE-E-eccCHHHHHHhhCCCCEE
Confidence            688999999999999999985 899999999998765421 100       12232111 1 1112   33344568999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      +-++.....     -...+..|+++..+|+++..
T Consensus       256 id~~g~~~~-----~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          256 IDTVSAVHP-----LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             EECCSSCCC-----SHHHHHHEEEEEEEEECCCC
T ss_pred             EECCCcHHH-----HHHHHHHHhcCCEEEEEccC
Confidence            988875322     24567788899999998753

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=95.84  E-value=0.017  Score=54.61  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      .++++.|||.|.+|+.++..| ...|. +|.+++|+.... +.+.+.+       +.   .+.  .++.  +.++|+|+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L-~~~G~~~i~v~nRt~~ka-~~la~~~-------~~---~~~--~~~~--~~~~DivIn  181 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKTG-QYLAALY-------GY---AYI--NSLE--NQQADILVN  181 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHHH-HHHHHHH-------TC---EEE--SCCT--TCCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CC---ccc--hhhh--cccCCEEEE
Confidence            467899999999999999998 57897 799999987542 2222211       10   111  1222  468999999


Q ss_pred             ccCCC
Q 015895          243 HPVLD  247 (398)
Q Consensus       243 ~~Plt  247 (398)
                      ++|..
T Consensus       182 aTp~g  186 (271)
T 1npy_A          182 VTSIG  186 (271)
T ss_dssp             CSSTT
T ss_pred             CCCCC
Confidence            99964

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=95.83  E-value=0.045  Score=52.65  Aligned_cols=109  Identities=15%  Similarity=0.087  Sum_probs=70.2

Q ss_pred             ccCCCeEEEE-ec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--c
Q 015895          162 LLKGQTVGVI-GA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  236 (398)
Q Consensus       162 ~l~gktvGII-Gl-G~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~  236 (398)
                      -+..+++.|| |. |+.|+.+++.+ +.+|.+++ ..+|.....                 .-.+...+.+++|+.+  .
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l-~~~G~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~   71 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQA-LEYGTNLVGGTTPGKGGK-----------------THLGLPVFNTVKEAKEQTG   71 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHHC
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHH-HHCCCcEEEEeCCCcCcc-----------------eECCeeeechHHHhhhcCC
Confidence            4667889999 99 99999999998 67888843 556643110                 0012333468999988  8


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcC-Ccc
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN-PMF  292 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g-~i~  292 (398)
                      .|++++++|. +.....+.+-.=...   ..+|+.+-|-. -|+..+.+..++. .+.
T Consensus        72 vD~avI~vP~-~~~~~~~~e~i~~Gi---~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           72 ATASVIYVPP-PFAAAAINEAIDAEV---PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             CCEEEECCCH-HHHHHHHHHHHHTTC---SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             CCEEEEecCH-HHHHHHHHHHHHCCC---CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            9999999994 333444433222222   24567777643 3445788888876 443

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.82  E-value=0.067  Score=53.83  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC----CHHHHhh--cC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS----SMDEVLR--EA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----sl~ell~--~a  237 (398)
                      .+|||||+|.||+..++.+ ... ++++ .++|+++... +.+.+.    +...+...  ...+.    +++++++  +.
T Consensus        21 ~rvgiIG~G~~g~~h~~~l-~~~~~~~lvav~d~~~~~~-~~~a~~----~~~~g~~~--~~~~~~~~~~~~~ll~~~~v   92 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENM-ARRDDVEIVAFADPDPYMV-GRAQEI----LKKNGKKP--AKVFGNGNDDYKNMLKDKNI   92 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HTCTTEEEEEEECSCHHHH-HHHHHH----HHHTTCCC--CEEECSSTTTHHHHTTCTTC
T ss_pred             ceEEEEecCHHHHHHHHHH-HhCCCcEEEEEEeCCHHHH-HHHHHH----HHhcCCCC--CceeccCCCCHHHHhcCCCC
Confidence            4799999999999999887 444 6775 4778876542 221111    11112110  11234    8999997  58


Q ss_pred             CEEEEccCCC
Q 015895          238 DVISLHPVLD  247 (398)
Q Consensus       238 DiV~l~~Plt  247 (398)
                      |+|++++|..
T Consensus        93 D~V~i~tp~~  102 (444)
T 2ixa_A           93 DAVFVSSPWE  102 (444)
T ss_dssp             CEEEECCCGG
T ss_pred             CEEEEcCCcH
Confidence            9999999953

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=95.82  E-value=0.18  Score=48.82  Aligned_cols=104  Identities=18%  Similarity=0.188  Sum_probs=65.8

Q ss_pred             ccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.|.+|+++|=|+ +..+.+..+ ..||++|.+..|..-   +......+..   ....|   ..+....+++|.++++
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~---a~~~G---~~~~~~~d~~eav~~a  224 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQY---AKENG---TKLLLTNDPLEAAHGG  224 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHH---HHHHT---CCEEEESCHHHHHTTC
T ss_pred             CcCCcEEEEECCchhhHHHHHHHH-HHcCCeEEEECCccccCCHHHHHHHHHH---HHHcC---CeEEEEECHHHHhccC
Confidence            48999999999854 777777665 578999999887532   1111111100   01112   1233457899999999


Q ss_pred             CEEEEcc----CCChhh----h----hhccHHHHhcCCCCcEEEEcC
Q 015895          238 DVISLHP----VLDKTT----Y----HLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       238 DiV~l~~----Plt~~T----~----~li~~~~~~~mk~gailIN~a  272 (398)
                      |+|..-+    ....+.    +    --++++.++.+|++++|.-|.
T Consensus       225 Dvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          225 NVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             SEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             CEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence            9998733    211111    0    235888888899999888873

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.81  E-value=0.034  Score=53.16  Aligned_cols=98  Identities=12%  Similarity=0.078  Sum_probs=59.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|+|+| +|+||+.+++.+...-++++. ++|+..+.....  + .   ..-.+..+.++....++++++.++|+|+-.
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~--d-~---gel~G~~~~gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDK--D-A---SILIGSDFLGVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTS--B-G---GGGTTCSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--c-h---HHhhccCcCCceeeCCHHHHhcCCCEEEEc
Confidence            4799999 999999999987445578865 457754321000  0 0   001122223344457899999999999876


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      .+  ++..   .+..-..++.|.-+|-.+.|
T Consensus        96 T~--p~a~---~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A           96 SQ--PQAS---VLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             SC--HHHH---HHHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHH---HHHHHHHHHcCCCEEEECCC
Confidence            64  2221   12222334567777777777

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.81  E-value=0.019  Score=60.17  Aligned_cols=104  Identities=17%  Similarity=0.221  Sum_probs=64.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChh------------------hHHHHHHhhhhhhhhhcCC-C
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGE-Q  220 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~-~  220 (398)
                      ..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|...-                  ...+...    ..+.+... .
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa----~~L~~iNP~v  397 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA----ASLKRIFPLM  397 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-TTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHH----HHHHHHCTTC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHH----HHHHhHCCCc
Confidence            5699999999999999999999985 6776 7888876520                  0111100    11111110 0


Q ss_pred             Ccccc-------------------ccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          221 PVTWK-------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       221 ~~~~~-------------------~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .....                   ....++++++++|+|+.++. +.+++.+++......   +..+|+.+-
T Consensus       398 ~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa~  465 (598)
T 3vh1_A          398 DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAAL  465 (598)
T ss_dssp             EEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEEE
T ss_pred             EEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEEE
Confidence            00000                   01235678899999999986 567898888765553   446666543

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.80  E-value=0.076  Score=53.28  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=70.3

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCC---------hhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~-fG~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (398)
                      |.++.|+++.|.|+|++|+..|+.| .. .|++|+ +.|.+         ....+..+.+..+ ++.   ..+ +. ...
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L-~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g-~l~---~y~-~a-~~~  276 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLI-SQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG-TVV---TYP-KG-ERI  276 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSS-CST---TCS-SS-EEE
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHH-HHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhC-Ccc---cCC-Cc-eEc
Confidence            4579999999999999999999987 56 899998 44432         1112222211110 000   000 01 112


Q ss_pred             CHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          229 SMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       229 sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +.++++ ..||+++-|..     .+.|+.+....++ ..+++-.+-+.+- .++- +.|.+..+
T Consensus       277 ~~~eil~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a~-~~l~~~Gi  332 (415)
T 2tmg_A          277 TNEELLELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEAD-EILSRRGI  332 (415)
T ss_dssp             CHHHHTTCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHHH-HHHHHTTC
T ss_pred             CchhhhcCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHHH-HHHHHCCC
Confidence            456665 58999998875     4456777777774 5577777777764 3332 33444443

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=95.79  E-value=0.026  Score=53.71  Aligned_cols=102  Identities=22%  Similarity=0.194  Sum_probs=61.1

Q ss_pred             CeEEEEecChhHHHHHHHHHh---cCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCE
Q 015895          166 QTVGVIGAGRIGSAYARMMVE---GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~---~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDi  239 (398)
                      .+|||||+|.||+..++.+..   .-+.+++ ++|++...             +.     .+.. ..+++++++  +.|+
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a-------------~~-----~g~~-~~~~~ell~~~~vD~   68 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-------------SL-----DEVR-QISLEDALRSQEIDV   68 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-------------EE-----TTEE-BCCHHHHHHCSSEEE
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH-------------HH-----cCCC-CCCHHHHhcCCCCCE
Confidence            479999999999999988732   2356665 56654211             00     1111 368999997  6899


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHHHhcCCc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~ga-ilIN~-aRG~~vde~aL~~aL~~g~i  291 (398)
                      |++++|....  .   +...+.++.|. +++.- ---.+-+.++|.++.++..+
T Consensus        69 V~i~tp~~~H--~---~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  117 (294)
T 1lc0_A           69 AYICSESSSH--E---DYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR  117 (294)
T ss_dssp             EEECSCGGGH--H---HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             EEEeCCcHhH--H---HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            9999995322  2   12223344454 55542 12234555678777765443

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.78  E-value=0.034  Score=53.52  Aligned_cols=109  Identities=23%  Similarity=0.263  Sum_probs=60.8

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|.+++..++. ...-++..+|..... .+.....+.... ... .+..... .+ .+.++.||+|+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k-~~g~a~dl~~~~-~~~-~~~~v~~-~~-~~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKL-AQAHAEDILHAT-PFA-HPVWVWA-GS-YGDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHH-HHHHHHHHHTTG-GGS-CCCEEEE-CC-GGGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhH-HHHHHHHHHHhH-hhc-CCeEEEE-CC-HHHhCCCCEEEECC
Confidence            479999999999999988743 233589999998643 221111110000 000 1111221 23 56689999999987


Q ss_pred             CCChh---hh-hh--ccH-------HHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          245 VLDKT---TY-HL--INK-------ERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       245 Plt~~---T~-~l--i~~-------~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      +....   ++ .+  .|.       +.+....|.+++|+++-  ++|.-.
T Consensus        76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~~t  123 (310)
T 2xxj_A           76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN--PVDVMT  123 (310)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHHHH
T ss_pred             CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC--chHHHH
Confidence            64322   11 11  111       12333378899999844  444443

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=95.78  E-value=0.031  Score=55.60  Aligned_cols=141  Identities=16%  Similarity=0.118  Sum_probs=88.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      -.++-|+|.|.+|+.+|+.+ +.+|++|.++|+++...                          + .+-+..+|-++...
T Consensus       204 ~~rL~IfGAGhva~ala~~a-~~lg~~V~v~D~R~~~~--------------------------~-~~~fp~a~~~~~~~  255 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQG-AFLGYRVTVCDARPVFA--------------------------T-TARFPTADEVVVDW  255 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHH-HHTTCEEEEEESCTTTS--------------------------C-TTTCSSSSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCchhhc--------------------------c-cccCCCceEEEeCC
Confidence            45899999999999999986 79999999999876310                          0 11235666555555


Q ss_pred             CCChhhhhhccHHHHh---cCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEe--------ccCC---CCCCCC---C
Q 015895          245 VLDKTTYHLINKERLA---TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL--------DVFE---DEPYMK---P  307 (398)
Q Consensus       245 Plt~~T~~li~~~~~~---~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAal--------DV~~---~EP~~~---~  307 (398)
                      |.  +   .+..  +.   .+.+++.+|=++++.-.|...|..+|+++.....++        ++.+   .+=..+   .
T Consensus       256 p~--~---~~~~--~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG~iGSrrk~~~~~~rL~~~G~~~~~l~  328 (386)
T 2we8_A          256 PH--R---YLAA--QAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLTEEELA  328 (386)
T ss_dssp             HH--H---HHHH--HHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEEECCCHHHHHHHHHHHHHTTCCHHHHT
T ss_pred             hH--H---HHHh--hccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEEEecChhHHHHHHHHHHhCCCChHHhc
Confidence            41  1   1111  11   267889999999999999999999999873444443        0000   000000   1


Q ss_pred             CCCCCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 015895          308 GLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGY  347 (398)
Q Consensus       308 ~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~g~  347 (398)
                      .|. -|  |=. .||+.|.+   ..+.-++.+|.+..+|.
T Consensus       329 Rl~-~P--IGL-dIGa~tPe---EIAvSI~AEiia~~~~~  361 (386)
T 2we8_A          329 RLS-SP--IGL-DLGGRTPE---ETAVSIAAEIIAKRWGG  361 (386)
T ss_dssp             TCB-CS--CSC-CCCCCSHH---HHHHHHHHHHHHHHTC-
T ss_pred             cEE-cC--CCC-CCCCCCHH---HHHHHHHHHHHHHHhcC
Confidence            111 12  112 38888885   55666677788877664

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.77  E-value=0.79  Score=44.97  Aligned_cols=105  Identities=12%  Similarity=0.118  Sum_probs=66.4

Q ss_pred             cccCCCeEEEEec--ChhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 015895          161 NLLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (398)
Q Consensus       161 ~~l~gktvGIIGl--G~IG~~vA~~la~~fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~  235 (398)
                      ..+.|++|+++|=  +++..+.+..+ ..||++|.+..|..   ++..-...+.   .....|   ..+....+++|.++
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~---~~~~~g---~~v~~~~d~~eav~  249 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGA-AKMGMDIRLVGPQAYWPDEELVAACQA---IAKQTG---GKITLTENVAEGVQ  249 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHH-HHHTCEEEEESCGGGSCCHHHHHHHHH---HHHHHT---CEEEEESCHHHHHT
T ss_pred             CCcCceEEEecCCCCcccchHHHHHH-HhcCceEEEeCCcccCCCHHHHHHHHH---HHHHcC---CcceeccCHHHHhc
Confidence            4689999999995  48999999886 68999999998743   1111110000   011112   12334568999999


Q ss_pred             cCCEEEEccC----CChhh---------hhhccHHHHhc-CCCCcEEEEcC
Q 015895          236 EADVISLHPV----LDKTT---------YHLINKERLAT-MKKEAILVNCS  272 (398)
Q Consensus       236 ~aDiV~l~~P----lt~~T---------~~li~~~~~~~-mk~gailIN~a  272 (398)
                      .||+|..-.=    ..++.         .--++.+.++. .|++++|.-|.
T Consensus       250 ~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          250 GCDFLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             TCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             cCcEEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            9999974221    11111         11257888876 47889988874

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.76  E-value=0.064  Score=52.44  Aligned_cols=69  Identities=14%  Similarity=0.194  Sum_probs=46.8

Q ss_pred             CCeEEEEecChhHH-HHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEE
Q 015895          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~-~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV  240 (398)
                      -.+|||||+|.+|. ..+..+ +.-+.++ .++|+++... +.+.+.+       +.    ...+.+++++++.  .|+|
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~-~~~~~~lvav~d~~~~~a-~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~V   92 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCL-LRAGARLAGFHEKDDALA-AEFSAVY-------AD----ARRIATAEEILEDENIGLI   92 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHH-HHTTCEEEEEECSCHHHH-HHHHHHS-------SS----CCEESCHHHHHTCTTCCEE
T ss_pred             CcEEEEECcCHHHHHHHHHHh-hcCCcEEEEEEcCCHHHH-HHHHHHc-------CC----CcccCCHHHHhcCCCCCEE
Confidence            35899999999995 466665 4567885 4678876542 2222221       11    1235789999975  8999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      ++++|.
T Consensus        93 ~I~tp~   98 (361)
T 3u3x_A           93 VSAAVS   98 (361)
T ss_dssp             EECCCH
T ss_pred             EEeCCh
Confidence            999994

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.76  E-value=0.022  Score=53.86  Aligned_cols=39  Identities=18%  Similarity=0.295  Sum_probs=34.4

Q ss_pred             ccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ++.||++.|+| .|.||+.+++.| ...|++|++++|+...
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L-~~~G~~V~i~~R~~~~  155 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDK  155 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEECCHHH
Confidence            57889999999 999999999998 5789999999997643

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.76  E-value=0.036  Score=52.34  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=34.9

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .++.||++.|.|. |-||+++|++| ...|++|++.+++...
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAF-AKEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCchH
Confidence            4689999999997 88999999998 4789999999987654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.75  E-value=0.049  Score=55.23  Aligned_cols=97  Identities=14%  Similarity=0.164  Sum_probs=66.8

Q ss_pred             ccccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       160 g~~l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      +..+.|++|+|+|+-          .=...+++.| ...|++|.+|||...+....   .|+          .......+
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~----------~~~~~~~~  378 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKL-LEVGCRVRVYDPVAMKEAQK---RLG----------DKVEYTTD  378 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSCHHHHHH---HHG----------GGSEECSS
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCcHHHHH---hcC----------ccceecCC
Confidence            456899999999984          3468899998 68999999999998543221   110          01223467


Q ss_pred             HHHHhhcCCEEEEccCCChhhhhhccHHHH-hcCCCCcEEEEcCCC
Q 015895          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRG  274 (398)
Q Consensus       230 l~ell~~aDiV~l~~Plt~~T~~li~~~~~-~~mk~gailIN~aRG  274 (398)
                      +++.++.||.|+++++- ++-+. ++-+.+ +.|+ +.+++|+ |+
T Consensus       379 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~  420 (450)
T 3gg2_A          379 MYDAVRGAEALFHVTEW-KEFRM-PDWSALSQAMA-ASLVIDG-RN  420 (450)
T ss_dssp             HHHHTTTCSCEEECSCC-GGGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred             HHHHhcCCCEEEEccCC-HHHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence            88999999999999974 33333 344444 4466 5688885 54

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.75  E-value=0.06  Score=47.86  Aligned_cols=97  Identities=11%  Similarity=0.035  Sum_probs=57.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc--ccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sl~ell~~aDiV~l  242 (398)
                      |+|.|.|. |.||+.+++.| ...|.+|++.+|+.....+.         ...+.....  ... .+. +.+..+|+|+.
T Consensus         1 MkilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~~D~~d-~~~-~~~~~~d~vi~   68 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEA-RRRGHEVLAVVRDPQKAADR---------LGATVATLVKEPLV-LTE-ADLDSVDAVVD   68 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHH---------TCTTSEEEECCGGG-CCH-HHHTTCSEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHH-HHCCCEEEEEEecccccccc---------cCCCceEEeccccc-ccH-hhcccCCEEEE
Confidence            46899997 99999999998 57799999999987542211         001110000  111 112 67889999998


Q ss_pred             ccCCC--h---hhhhhccHHHHhcCC-CCcEEEEcCCC
Q 015895          243 HPVLD--K---TTYHLINKERLATMK-KEAILVNCSRG  274 (398)
Q Consensus       243 ~~Plt--~---~T~~li~~~~~~~mk-~gailIN~aRG  274 (398)
                      +....  +   .+.-......+..|+ .|..+|++|..
T Consensus        69 ~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           69 ALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             CCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             CCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            87652  1   111111234555553 34677777653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.72  E-value=0.023  Score=58.21  Aligned_cols=98  Identities=15%  Similarity=0.244  Sum_probs=68.8

Q ss_pred             cccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       161 ~~l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      ..+.|++|+|+|+-          .=...+++.| ...|++|.+|||.....               .  .  .....++
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L-~~~g~~V~~~DP~~~~~---------------~--~--~~~~~~~  408 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLC-LKAGASVMVHDPYVVNY---------------P--G--VEISDNL  408 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHH-HHHTCEEEEECSSCCCB---------------T--T--BCEESCH
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHH-HHCCCEEEEECCCcccc---------------c--C--cceecCH
Confidence            46899999999974          3368899998 68999999999976420               0  0  1123588


Q ss_pred             HHHhhcCCEEEEccCCChhhhhhccHH-HHhcCC-CCcEEEEcCCCchhcHHHH
Q 015895          231 DEVLREADVISLHPVLDKTTYHLINKE-RLATMK-KEAILVNCSRGPVIDEVAL  282 (398)
Q Consensus       231 ~ell~~aDiV~l~~Plt~~T~~li~~~-~~~~mk-~gailIN~aRG~~vde~aL  282 (398)
                      ++.++.||.|+++++- ++-+. ++-+ ..+.|+ ++.+++|+ |+ +.|.+.+
T Consensus       409 ~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~  458 (478)
T 3g79_A          409 EEVVRNADAIVVLAGH-SAYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF  458 (478)
T ss_dssp             HHHHTTCSEEEECSCC-HHHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHhcCCEEEEecCC-HHHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            9999999999999974 33333 4444 445677 47899994 64 4554433

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.70  E-value=0.023  Score=55.32  Aligned_cols=79  Identities=20%  Similarity=0.195  Sum_probs=45.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCc--------cccccCCHHHHhhc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPV--------TWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~sl~ell~~  236 (398)
                      .+|||+|+|.||+.+++.+...-++++.+ +|+++.. ...+.+.++ . ...+..+.        ......+.++++.+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~-~~~~~~~~g-~-~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~   79 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF-EAYRAKELG-I-PVYAASEEFIPRFEKEGFEVAGTLNDLLEK   79 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH-HHHHHHHTT-C-CEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHH-HHHHHHhcC-c-cccccccccceeccCCceEEcCcHHHhccC
Confidence            37999999999999999874323567654 5654322 222111110 0 00000000        00122478899889


Q ss_pred             CCEEEEccCCC
Q 015895          237 ADVISLHPVLD  247 (398)
Q Consensus       237 aDiV~l~~Plt  247 (398)
                      +|+|+.|+|..
T Consensus        80 vDvV~~aTp~~   90 (334)
T 2czc_A           80 VDIIVDATPGG   90 (334)
T ss_dssp             CSEEEECCSTT
T ss_pred             CCEEEECCCcc
Confidence            99999999954

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.67  E-value=0.02  Score=50.63  Aligned_cols=95  Identities=18%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHh-----hc
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL-----RE  236 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl-~ell-----~~  236 (398)
                      .|++|.|+| .|.||+.+++.+ +..|++|++.+++.... +.        .+..+..........+. +++.     ..
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~~--------~~~~g~~~~~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKR-EM--------LSRLGVEYVGDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH-HH--------HHTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH--------HHHcCCCEEeeCCcHHHHHHHHHHhCCCC
Confidence            578999999 699999999986 68899999999876432 11        11112111000001122 2221     13


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      .|+|+.+..  .++    -...+..|+++..+|+++..
T Consensus       108 ~D~vi~~~g--~~~----~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          108 VDVVLNSLA--GEA----IQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             EEEEEECCC--THH----HHHHHHTEEEEEEEEECSCG
T ss_pred             CeEEEECCc--hHH----HHHHHHHhccCCEEEEEcCC
Confidence            678777663  121    24567778888888887653

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=95.63  E-value=0.016  Score=56.01  Aligned_cols=62  Identities=13%  Similarity=0.172  Sum_probs=44.9

Q ss_pred             CCeEEEEecChhHH-HHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc---CCE
Q 015895          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADV  239 (398)
Q Consensus       165 gktvGIIGlG~IG~-~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~---aDi  239 (398)
                      -.+|||||+|.||+ ..++.+++.-+.+|+ ++|++...                    .+...+.+++++++.   .|+
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~--------------------~g~~~~~~~~~ll~~~~~vD~   84 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV--------------------EGVNSYTTIEAMLDAEPSIDA   84 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC--------------------TTSEEESSHHHHHHHCTTCCE
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh--------------------cCCCccCCHHHHHhCCCCCCE
Confidence            35899999999999 688877433377765 56776421                    112235789999876   899


Q ss_pred             EEEccCC
Q 015895          240 ISLHPVL  246 (398)
Q Consensus       240 V~l~~Pl  246 (398)
                      |++++|.
T Consensus        85 V~i~tp~   91 (330)
T 4ew6_A           85 VSLCMPP   91 (330)
T ss_dssp             EEECSCH
T ss_pred             EEEeCCc
Confidence            9999994

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.63  E-value=0.017  Score=56.45  Aligned_cols=76  Identities=20%  Similarity=0.288  Sum_probs=44.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHh-----hhhh------hhhhcCCCCccccccCCHHHH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVT-----AYGQ------FLKANGEQPVTWKRASSMDEV  233 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~sl~el  233 (398)
                      .+|||+|+|.||+.+++.+...-++++.+. |+.+.. ......     .|+.      .+...+   ..+  ..+.+++
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~-~~~~~~~~g~~~~~~~~~~v~~~~~~~---l~v--~~~~~~~   75 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDF-EARMALKKGYDLYVAIPERVKLFEKAG---IEV--AGTVDDM   75 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSH-HHHHHHHTTCCEEESSGGGHHHHHHTT---CCC--CEEHHHH
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhH-HHHhcCCcchhhccccccceeeecCCc---eEE--cCCHHHH
Confidence            379999999999999998743356787554 544221 111110     0000      000000   000  1256788


Q ss_pred             hhcCCEEEEccCCC
Q 015895          234 LREADVISLHPVLD  247 (398)
Q Consensus       234 l~~aDiV~l~~Plt  247 (398)
                      +.++|+|+.|+|..
T Consensus        76 ~~~vDvV~~atp~~   89 (337)
T 1cf2_P           76 LDEADIVIDCTPEG   89 (337)
T ss_dssp             HHTCSEEEECCSTT
T ss_pred             hcCCCEEEECCCch
Confidence            88999999999953

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.62  E-value=0.015  Score=56.84  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=24.7

Q ss_pred             eEEEEecChhHHHHHHHHHhcC-CcEEEEEcCC
Q 015895          167 TVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLY  198 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~f-G~~V~~~d~~  198 (398)
                      +|||+|+|+||+.+.|.+ ... .++|.+.+..
T Consensus         3 kVgI~G~G~iGr~l~R~l-~~~~~veivain~~   34 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAA-LKNPDIEVVAVNDL   34 (334)
T ss_dssp             EEEEESCSHHHHHHHHHH-TTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHH-hCCCCeEEEEEeCC
Confidence            799999999999999987 444 6787766543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.62  E-value=0.019  Score=55.69  Aligned_cols=95  Identities=17%  Similarity=0.116  Sum_probs=59.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh------c
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~------~  236 (398)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++.... + +.       ++.+..........++.+.+.      .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~-~-~~-------~~~Ga~~~~~~~~~~~~~~v~~~~~g~g  236 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVA-KASGAYPVIVSEPSDFRR-E-LA-------KKVGADYVINPFEEDVVKEVMDITDGNG  236 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHH-H-HH-------HHHTCSEEECTTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-H-HH-------HHhCCCEEECCCCcCHHHHHHHHcCCCC
Confidence            788999999999999999985 79999 999999876432 1 11       111221110011123333221      4


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .|+|+-+++..+ +    -...+..++++..++.++.
T Consensus       237 ~D~vid~~g~~~-~----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          237 VDVFLEFSGAPK-A----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEEEECSCCHH-H----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCCHH-H----HHHHHHHHhcCCEEEEEcc
Confidence            788888876321 1    1445677788888887754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.61  E-value=0.065  Score=53.07  Aligned_cols=101  Identities=16%  Similarity=0.171  Sum_probs=60.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------h
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  235 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell------~  235 (398)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.... + +..       +.|..........++.+.+      .
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~-~-~~~-------~lGa~~vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEPSEVRR-N-LAK-------ELGADHVIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHH-H-HHH-------HHTCSEEECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-H-HHH-------HcCCCEEEcCCCCCHHHHHHHHhCCC
Confidence            4678999999999999999985 89999 999999876542 1 111       2232211111112332222      1


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ..|+|+-++.....+...+.+-.+..++++..++.++-
T Consensus       282 g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          282 GAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            48999988875322222221212233488888888864

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.59  E-value=0.012  Score=52.76  Aligned_cols=100  Identities=11%  Similarity=0.240  Sum_probs=59.4

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV~l  242 (398)
                      |++.|.| .|.||+.+++.|++.-|++|++.+++.....+.+..      ...+....  ......+++++++.+|+|+.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII------DHERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH------TSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc------CCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            6799999 599999999998426899999999987511111100      00000000  01112346678899999998


Q ss_pred             ccCCChhhhhhccHHHHhcCCC-C-cEEEEcCCCc
Q 015895          243 HPVLDKTTYHLINKERLATMKK-E-AILVNCSRGP  275 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~-g-ailIN~aRG~  275 (398)
                      +.....- .   .+..+..|++ | ..||++|...
T Consensus        80 ~ag~~n~-~---~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           80 GAMESGS-D---MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             SCCCCHH-H---HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             cCCCCCh-h---HHHHHHHHHhcCCCeEEEEeece
Confidence            8875311 1   3344444432 2 3688876643

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.58  E-value=0.0082  Score=57.07  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=36.2

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ..++.||+|.|||.|.+|...++.| ...|++|.++++...
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~L-l~~Ga~VtViap~~~   47 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLH   47 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEEC
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHH-HhCCCEEEEEcCCCC
Confidence            3579999999999999999999998 699999999998764

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.58  E-value=0.013  Score=57.26  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=62.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHh---
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVL---  234 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl-~ell---  234 (398)
                      .+.|++|.|+|.|.||..+++.+ +.+|++|++.+++.   ...  ++...+       +.... . .. ++ +++.   
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~--~~~~~~-------ga~~v-~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLF-RTYGLEVWMANRREPTEVEQ--TVIEET-------KTNYY-N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHH-HHHTCEEEEEESSCCCHHHH--HHHHHH-------TCEEE-E-CT-TCSHHHHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCccchHHH--HHHHHh-------CCcee-c-hH-HHHHHHHHhC
Confidence            57799999999999999999986 78999999999876   432  111111       22111 0 00 11 1221   


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ...|+|+-++......   + +..+..|+++..+|+++-
T Consensus       245 ~~~d~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          245 GKFDVIIDATGADVNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CCEEEEEECCCCCTHH---H-HHHGGGEEEEEEEEECSC
T ss_pred             CCCCEEEECCCChHHH---H-HHHHHHHhcCCEEEEEec
Confidence            3589999888753221   1 456788899999998865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.58  E-value=0.03  Score=54.04  Aligned_cols=96  Identities=14%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh----hcCCE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----READV  239 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell----~~aDi  239 (398)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++.... +.        +++.+..........++.+.+    ...|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~--------~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~  233 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKL-EL--------AKELGADLVVNPLKEDAAKFMKEKVGGVHA  233 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HH--------HHHTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH--------HHHCCCCEEecCCCccHHHHHHHHhCCCCE
Confidence            477999999999999999985 78999999999876542 11        112222111000112332222    45799


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      |+-++...+ +    -+..+..++++..++.++..
T Consensus       234 vid~~g~~~-~----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          234 AVVTAVSKP-A----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             EEESSCCHH-H----HHHHHHHEEEEEEEEECCCC
T ss_pred             EEECCCCHH-H----HHHHHHHhhcCCEEEEeccc
Confidence            988876322 1    24567788888899888753

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.54  E-value=0.066  Score=52.15  Aligned_cols=111  Identities=13%  Similarity=0.200  Sum_probs=64.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcC--CCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANG--EQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sl~ell~~a  237 (398)
                      ....++|+|||.|.||..+|..++ ..|.  ++..+|...........+     +.+..  ..........+.+ .+++|
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~L~Di~~~~~~g~a~D-----L~~~~~~~~~~~i~~~~d~~-~~~~a   88 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISIL-MKDLADELALVDVIEDKLKGEMMD-----LQHGSLFLKTPKIVSSKDYS-VTANS   88 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSCHHHHHHHHHH-----HHHTGGGCSCCEEEECSSGG-GGTTE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEeCChHHHHHHHHh-----hhhhhhccCCCeEEEcCCHH-HhCCC
Confidence            456789999999999999998874 3454  899999976432111111     11100  0001111123555 48999


Q ss_pred             CEEEEccCCC--h-hhh-hhcc---------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          238 DVISLHPVLD--K-TTY-HLIN---------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       238 DiV~l~~Plt--~-~T~-~li~---------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      |+|+++....  + +|| .++.         .+.+....|++++++++-  ++|.-.
T Consensus        89 DiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN--Pvdi~t  143 (331)
T 4aj2_A           89 KLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN--PVDILT  143 (331)
T ss_dssp             EEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHHHH
T ss_pred             CEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC--hHHHHH
Confidence            9999885432  1 233 2221         123444578999999985  445443

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=95.53  E-value=0.23  Score=48.81  Aligned_cols=157  Identities=15%  Similarity=0.134  Sum_probs=91.3

Q ss_pred             ceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (398)
Q Consensus        88 k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt  167 (398)
                      .+|+..+-.-..+. +.+.--+|+|.|.-+...-+  -.+++=++.+.+++                     | .+.|.+
T Consensus       124 D~IviR~~~~~~~~-~lA~~s~vPVINa~~~~~HP--tQaLaDl~Ti~E~~---------------------g-~l~gl~  178 (359)
T 2w37_A          124 DGIEFRGFKQSDAE-ILARDSGVPVWNGLTDEWHP--TQMLADFMTVKENF---------------------G-KLQGLT  178 (359)
T ss_dssp             SEEEEESSCHHHHH-HHHHHSSSCEEEEECSSCCH--HHHHHHHHHHHHHH---------------------S-CCTTCE
T ss_pred             CEEEEecCChHHHH-HHHHhCCCCEEcCCCCCCCc--cHHHHHHHHHHHHh---------------------C-CcCCeE
Confidence            45555543333332 33445679999976533222  22333333333311                     1 488999


Q ss_pred             EEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          168 VGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       168 vGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      |+++|=|  ++..+.+..+ ..||++|.+..|..-.-.+.+.+.........|.   .+....+++|.+++||+|..-.=
T Consensus       179 va~vGD~~~rva~Sl~~~~-~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~---~v~~~~d~~eav~~aDvvytd~w  254 (359)
T 2w37_A          179 LTFMGDGRNNVANSLLVTG-AILGVNIHIVAPKALFPTEETQNIAKGFAEKSGA---KLVITDDLDEGLKGSNVVYTDVW  254 (359)
T ss_dssp             EEEESCTTSHHHHHHHHHH-HHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTC---CEEEESCHHHHHTTCSEEEECCS
T ss_pred             EEEECCCccchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcCC---eEEEEeCHHHHhcCCCEEEEccc
Confidence            9999996  9999999987 5789999999875321001111000000011221   13335789999999999976322


Q ss_pred             ----CC--hh-----hhhhccHHHHhcCC---CCcEEEEcCC
Q 015895          246 ----LD--KT-----TYHLINKERLATMK---KEAILVNCSR  273 (398)
Q Consensus       246 ----lt--~~-----T~~li~~~~~~~mk---~gailIN~aR  273 (398)
                          ..  .+     ..--++.+.++.+|   ++++|.-|.=
T Consensus       255 ~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          255 VSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             CCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred             ccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence                10  11     11335888999999   9999988843

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.52  E-value=0.098  Score=45.53  Aligned_cols=73  Identities=11%  Similarity=0.052  Sum_probs=47.7

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEE
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV~  241 (398)
                      +|+|.|.|. |.||+.+++.| ...|.+|++.+|+......         ....+....  ......++.++++.+|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l-~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HHCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            478999998 99999999998 5679999999987653110         000010000  0011124667788999998


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      .+....
T Consensus        73 ~~a~~~   78 (206)
T 1hdo_A           73 VLLGTR   78 (206)
T ss_dssp             ECCCCT
T ss_pred             ECccCC
Confidence            887643

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.51  E-value=0.025  Score=56.22  Aligned_cols=70  Identities=24%  Similarity=0.346  Sum_probs=46.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhc--------CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG--------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--------fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-  235 (398)
                      .+|||||+|.||+.-++.+++.        -+.+|+ ++|+++.. .+.+.+.|       +..    ..+.+++++++ 
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~-a~~~a~~~-------~~~----~~y~d~~~ll~~   94 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAM-AERHAAKL-------GAE----KAYGDWRELVND   94 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHH-HHHHHHHH-------TCS----EEESSHHHHHHC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHH-HHHHHHHc-------CCC----eEECCHHHHhcC
Confidence            3899999999999888776321        145655 56887754 23322222       211    13468999996 


Q ss_pred             -cCCEEEEccCCC
Q 015895          236 -EADVISLHPVLD  247 (398)
Q Consensus       236 -~aDiV~l~~Plt  247 (398)
                       +.|+|++++|..
T Consensus        95 ~~vD~V~I~tp~~  107 (412)
T 4gqa_A           95 PQVDVVDITSPNH  107 (412)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCCEEEECCCcH
Confidence             579999999953

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.46  E-value=0.06  Score=47.60  Aligned_cols=96  Identities=10%  Similarity=0.081  Sum_probs=58.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc--ccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sl~ell~~aDiV~l  242 (398)
                      |+|.|.| .|.||+.+++.| ...|.+|++.+|+.....+.         . .+.....  .... +. +.+..+|+|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~---------~-~~~~~~~~D~~d~-~~-~~~~~~d~vi~   67 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEA-KNRGHEVTAIVRNAGKITQT---------H-KDINILQKDIFDL-TL-SDLSDQNVVVD   67 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCSHHHHHH---------C-SSSEEEECCGGGC-CH-HHHTTCSEEEE
T ss_pred             CeEEEEcCCchhHHHHHHHH-HhCCCEEEEEEcCchhhhhc---------c-CCCeEEeccccCh-hh-hhhcCCCEEEE
Confidence            4799999 599999999998 57899999999987542210         0 0100000  1111 12 67889999998


Q ss_pred             ccCCChhhhh---hccHHHHhcCCC--CcEEEEcCCC
Q 015895          243 HPVLDKTTYH---LINKERLATMKK--EAILVNCSRG  274 (398)
Q Consensus       243 ~~Plt~~T~~---li~~~~~~~mk~--gailIN~aRG  274 (398)
                      +...+.....   ......+..|++  ...+|.+|..
T Consensus        68 ~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           68 AYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            8865433211   112334445543  3567777654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.45  E-value=0.037  Score=55.90  Aligned_cols=86  Identities=13%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             ccCCCeEEEEecC----------hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       162 ~l~gktvGIIGlG----------~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      .+.|++|+|+|+-          .-...+++.| ... |++|.+|||.....                      ....++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L-~~~~g~~V~~~DP~~~~~----------------------~~~~~~  368 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELL-NQEPDIEVCAYDPHVELD----------------------FVEHDM  368 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHH-HHSTTCEEEEECSSCCCT----------------------TBCSTT
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHH-HhhcCCEEEEECCCcccc----------------------cccCCH
Confidence            4789999999984          3468899998 677 99999999976431                      123578


Q ss_pred             HHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       231 ~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      ++.++.||.|+++++- ++-+. ++-+.+..|+ +.+++|. |+
T Consensus       369 ~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~-~~~i~D~-r~  408 (431)
T 3ojo_A          369 SHAVKDASLVLILSDH-SEFKN-LSDSHFDKMK-HKVIFDT-KN  408 (431)
T ss_dssp             HHHHTTCSEEEECSCC-GGGTS-CCGGGGTTCS-SCEEEES-SC
T ss_pred             HHHHhCCCEEEEecCC-HHHhc-cCHHHHHhCC-CCEEEEC-CC
Confidence            8999999999999974 33333 3444456676 6788885 54

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.43  E-value=0.012  Score=57.78  Aligned_cols=100  Identities=13%  Similarity=0.196  Sum_probs=52.3

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhh----cCCCCccccccCCHHHHhh-cCC
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKA----NGEQPVTWKRASSMDEVLR-EAD  238 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sl~ell~-~aD  238 (398)
                      .+|||+| +|.||+.+++.| ... +++|.+..+++......+.+.+. +...    .+.....+.. .+++++++ .+|
T Consensus         9 ~kV~IiGAtG~iG~~llr~L-~~~p~~ev~~i~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D   85 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLL-ADHPMFELTALAASERSAGKKYKDACY-WFQDRDIPENIKDMVVIP-TDPKHEEFEDVD   85 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-TTCSSEEEEEEEECTTTTTSBHHHHSC-CCCSSCCCHHHHTCBCEE-SCTTSGGGTTCC
T ss_pred             ceEEEECcCCHHHHHHHHHH-hcCCCCEEEEEEcccccccccHHHhcc-cccccccccCceeeEEEe-CCHHHHhcCCCC
Confidence            4899999 999999999997 444 46876663221111000100000 0000    0000011111 24455556 899


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|++|+|.. .+..+. ...   .+.|+.+|+.+-
T Consensus        86 vV~~atp~~-~~~~~a-~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           86 IVFSALPSD-LAKKFE-PEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             EEEECCCHH-HHHHHH-HHH---HHTTCEEEECCS
T ss_pred             EEEECCCch-HHHHHH-HHH---HHCCCEEEECCc
Confidence            999999942 222221 222   346888998864

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=95.41  E-value=0.047  Score=53.10  Aligned_cols=117  Identities=16%  Similarity=0.239  Sum_probs=68.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhc--------CCcEEEE-EcCChhhH----HHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG--------FKMNLIY-YDLYQATR----LEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--------fG~~V~~-~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e  232 (398)
                      .+|||||+|.||+.+++.+...        .+.+|.+ +|++....    ...+...    .....  .  +....++++
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~----~~~~~--~--~~~~~d~~~   74 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRM----KRETG--M--LRDDAKAIE   74 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHH----HHHHS--S--CSBCCCHHH
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhh----hccCc--c--ccCCCCHHH
Confidence            3799999999999999987433        5777654 46553211    0110000    00000  0  000238899


Q ss_pred             Hhh--cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhcCCc
Q 015895          233 VLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (398)
Q Consensus       233 ll~--~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v-de~aL~~aL~~g~i  291 (398)
                      ++.  ..|+|+.++|....+.. .-+-....++.|.-+|...-+.+. +-+.|.++.++.+.
T Consensus        75 ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~  135 (327)
T 3do5_A           75 VVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV  135 (327)
T ss_dssp             HHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence            885  48999999996433222 123346667888888887665553 45667777776654

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.40  E-value=0.057  Score=56.64  Aligned_cols=142  Identities=14%  Similarity=0.174  Sum_probs=84.4

Q ss_pred             CceEEecCCC-CCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccc-cccCCCeEEEEecChhHHHHHHHHHh
Q 015895          109 GIAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVE  186 (398)
Q Consensus       109 gI~V~n~p~~-~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~la~  186 (398)
                      +-..++-... +....||.+.-+-|-+.|             |.-|..   .| ..|++++|.|||+|.+|..+|+.|+ 
T Consensus       284 ~~~~~~l~~~~dp~~la~~~~~Lnlklm~-------------wRllp~---~g~ekL~~arVLIVGaGGLGs~vA~~La-  346 (615)
T 4gsl_A          284 APRVVDLSSLLDPLKIADQSVDLNLKLMK-------------WRILPD---LNLDIIKNTKVLLLGAGTLGCYVSRALI-  346 (615)
T ss_dssp             CCEEEECHHHHCHHHHHHHHHHHHHHHHH-------------HHTCTT---CCHHHHHTCEEEEECCSHHHHHHHHHHH-
T ss_pred             ceeEEeccccCCHHHHHhhhhhhhhHHHH-------------Hhhcch---hhHHHHhCCeEEEECCCHHHHHHHHHHH-
Confidence            3555665443 666778888777666665             211211   22 3689999999999999999999985 


Q ss_pred             cCCc-EEEEEcCChhhH---HHH-----------HHhhhhhhhhhcCCCCccccc---------------------cCCH
Q 015895          187 GFKM-NLIYYDLYQATR---LEK-----------FVTAYGQFLKANGEQPVTWKR---------------------ASSM  230 (398)
Q Consensus       187 ~fG~-~V~~~d~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~sl  230 (398)
                      ..|. ++..+|...-..   -++           ..+.....+.+.... +.+..                     ...+
T Consensus       347 ~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~-V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l  425 (615)
T 4gsl_A          347 AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL-MDATGVKLSIPMIGHKLVNEEAQHKDFDRL  425 (615)
T ss_dssp             HTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTT-CEEEEECCCCCCTTCCCSCHHHHHHHHHHH
T ss_pred             HcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCC-cEEEEeeccccccCccccchhhhcCCHHHH
Confidence            5665 788888754100   000           000000111111100 00100                     1135


Q ss_pred             HHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       231 ~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +++++++|+|+.++- +.+++.++++.....   +..+|+.+
T Consensus       426 ~~ll~~~DlVvd~tD-n~~tR~~ln~~c~~~---~~PlI~aa  463 (615)
T 4gsl_A          426 RALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  463 (615)
T ss_dssp             HHHHHHCSEEEECCS-SGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             HHHhhcCCEEEecCC-CHHHHHHHHHHHHHc---CCeEEEEE
Confidence            678899999998885 578899888766553   44577764

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.37  E-value=0.29  Score=47.11  Aligned_cols=101  Identities=14%  Similarity=0.235  Sum_probs=65.5

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.|++|+++|= +++..+.+..+ ..||++|.+..|..-.-.+.+       +..  .....+....+++|.++++|+|
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~-------~~~--~~g~~v~~~~d~~eav~~aDvv  220 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAA-RILDFKLQLSTPPGYALDAKL-------VDA--ESAPFYQVFDDPNEACKGADLV  220 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCGGGCCCGGG-------SCG--GGGGGEEECSSHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHH-HHcCCEEEEECCcccCCCHHH-------HHH--HcCCeEEEEcCHHHHhcCCCEE
Confidence            488999999996 57777887776 578999999887431100000       000  0011233457899999999999


Q ss_pred             EEcc----CCCh---h-----hhhhccHHHHhcCCCCcEEEEcC
Q 015895          241 SLHP----VLDK---T-----TYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       241 ~l~~----Plt~---~-----T~~li~~~~~~~mk~gailIN~a  272 (398)
                      ..-.    ....   +     ..--++.+.++.+|++++|.-|.
T Consensus       221 yt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          221 TTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             EECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence            7643    1100   0     12336899999999999999884

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.36  E-value=0.082  Score=50.92  Aligned_cols=105  Identities=22%  Similarity=0.314  Sum_probs=62.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhcCCE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~sl~ell~~aDi  239 (398)
                      ++|+|||. |.+|+.++..|+ ..|  .+|..+|.........  +     +.+. ..+.....   ..++++.++.||+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~-~~~~~~ev~L~Di~~~~~~a~--d-----L~~~-~~~~~l~~~~~t~d~~~a~~~aDv   71 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPGVAA--D-----LSHI-ETRATVKGYLGPEQLPDCLKGCDV   71 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHHHHH--H-----HTTS-SSSCEEEEEESGGGHHHHHTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCcEEEEEeCCccHHHHH--H-----Hhcc-CcCceEEEecCCCCHHHHhCCCCE
Confidence            47999998 999999999874 445  6899999876221110  1     1111 11111211   1368888999999


Q ss_pred             EEEccCCCh---hhh-hhc--c----H---HHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          240 ISLHPVLDK---TTY-HLI--N----K---ERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       240 V~l~~Plt~---~T~-~li--~----~---~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      |+++.+...   +++ .++  |    .   +.+....+++++|+++  .++|.-.
T Consensus        72 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~~  124 (314)
T 1mld_A           72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNSTI  124 (314)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred             EEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchhH
Confidence            999875322   111 111  1    1   1233335788999974  4566554

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.36  E-value=0.015  Score=58.30  Aligned_cols=39  Identities=21%  Similarity=0.452  Sum_probs=34.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      -+.|++|+|+|-|.+|+.+++.+ +.+|.+|+++|+++..
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa-~~lG~~v~v~d~~~~~   70 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAA-QSMGYRVAVLDPDPAS   70 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCcC
Confidence            46899999999999999999986 8999999999987643

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.34  E-value=0.037  Score=53.35  Aligned_cols=96  Identities=14%  Similarity=0.168  Sum_probs=60.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh----cCC
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EAD  238 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~----~aD  238 (398)
                      -.|.+|.|+|.|.||...++.+ +.+|++|++.+++.... + +       +++.|..........++.+.+.    ..|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~-~-------~~~lGa~~~i~~~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYA-RAMGLRVAAVDIDDAKL-N-L-------ARRLGAEVAVNARDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHH-HHTTCEEEEEESCHHHH-H-H-------HHHTTCSEEEETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-H-H-------HHHcCCCEEEeCCCcCHHHHHHHhCCCCC
Confidence            3578999999999999999985 89999999999876542 1 1       1222322111111123333222    578


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|+.+... +++    -...+..++++..++.++-
T Consensus       235 ~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          235 GVLVTAVS-PKA----FSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             EEEESSCC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred             EEEEeCCC-HHH----HHHHHHHhccCCEEEEeCC
Confidence            88877653 221    2456677888888888753

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=95.32  E-value=0.0096  Score=54.38  Aligned_cols=67  Identities=15%  Similarity=0.187  Sum_probs=44.2

Q ss_pred             CeEEEEecChhHHHHHHHH-HhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMM-VEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~l-a~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aDiV~l  242 (398)
                      ++++|||.|++|+.+++.+ ... |++++ ++|.++...-.           ...  ..++....+++++++ +.|+|++
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~-----------~i~--gv~V~~~~dl~ell~~~ID~ViI  146 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGR-----------PVR--GGVIEHVDLLPQRVPGRIEIALL  146 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTC-----------EET--TEEEEEGGGHHHHSTTTCCEEEE
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhh-----------hhc--CCeeecHHhHHHHHHcCCCEEEE
Confidence            4799999999999999852 134 78765 55766543100           001  122223467888886 5899999


Q ss_pred             ccCC
Q 015895          243 HPVL  246 (398)
Q Consensus       243 ~~Pl  246 (398)
                      ++|.
T Consensus       147 A~Ps  150 (211)
T 2dt5_A          147 TVPR  150 (211)
T ss_dssp             CSCH
T ss_pred             eCCc
Confidence            9994

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.30  E-value=0.1  Score=50.86  Aligned_cols=95  Identities=19%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhh-----
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~sl~ell~-----  235 (398)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +       +++.|........  ..++.+.+.     
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~--~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~~  261 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDKFE--K-------AKVFGATDFVNPNDHSEPISQVLSKMTNG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--H-------HHHTTCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--H-------HHHhCCceEEeccccchhHHHHHHHHhCC
Confidence            578999999999999999985 89999 8999998765421  1       1122322111001  023444332     


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~g-ailIN~aR  273 (398)
                      ..|+|+-++... ++    -...+..++++ ..++.++-
T Consensus       262 g~D~vid~~g~~-~~----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          262 GVDFSLECVGNV-GV----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CBSEEEECSCCH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCCH-HH----HHHHHHHhhcCCcEEEEEcC
Confidence            479999888642 21    24667888988 88888764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.28  E-value=0.11  Score=52.95  Aligned_cols=109  Identities=13%  Similarity=0.098  Sum_probs=69.2

Q ss_pred             ccccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhh---hhhhcCCCCccccc
Q 015895          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ---FLKANGEQPVTWKR  226 (398)
Q Consensus       160 g~~l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  226 (398)
                      +..+.|++|+|+|+-          .=...+++.| ...|++|.+|||........   .|+.   .+.... .  ....
T Consensus       323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~-~--~~~~  395 (478)
T 2y0c_A          323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAEL-LSRGARIAAYDPVAQEEARR---VIALDLADHPSWL-E--RLSF  395 (478)
T ss_dssp             CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECTTTHHHHHH---HHHHHTTTCHHHH-T--TEEE
T ss_pred             cccCCCCEEEEEecccCCCCCccccChHHHHHHHH-HHCCCEEEEECCCccHHHHH---hhccccccccccc-c--ceee
Confidence            346899999999984          3567889998 68999999999986543221   1110   000000 0  0223


Q ss_pred             cCCHHHHhhcCCEEEEccCCChhhhhhccHHHH-hcCCCCcEEEEcCCCchhcHH
Q 015895          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEV  280 (398)
Q Consensus       227 ~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~-~~mk~gailIN~aRG~~vde~  280 (398)
                      ..++++.++.||.|++++.- ++-+. ++-+.+ ..|+ +.+++|+ |+ +.|.+
T Consensus       396 ~~~~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          396 VDDEAQAARDADALVIVTEW-KIFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             CSSHHHHTTTCSEEEECSCC-GGGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             cCCHHHHHhCCCEEEEecCC-hHhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            45788999999999999985 33333 354444 4555 4788887 53 45544

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.28  E-value=0.08  Score=51.86  Aligned_cols=71  Identities=13%  Similarity=0.143  Sum_probs=45.6

Q ss_pred             CeEEEEe-cChhHHH-HH----HHHHhcCCcEE----------EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895          166 QTVGVIG-AGRIGSA-YA----RMMVEGFKMNL----------IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       166 ktvGIIG-lG~IG~~-vA----~~la~~fG~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      .+||||| +|.||+. .+    +.+...-+..+          .++|+++... +.+.+.+       +..    ..+.+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a-~~~a~~~-------~~~----~~~~~   74 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKV-EALAKRF-------NIA----RWTTD   74 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHH-HHHHHHT-------TCC----CEESC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHH-HHHHHHh-------CCC----cccCC
Confidence            4799999 9999998 66    55532323332          4888887542 2222211       211    12478


Q ss_pred             HHHHhhc--CCEEEEccCCCh
Q 015895          230 MDEVLRE--ADVISLHPVLDK  248 (398)
Q Consensus       230 l~ell~~--aDiV~l~~Plt~  248 (398)
                      +++++++  .|+|++++|...
T Consensus        75 ~~~ll~~~~iD~V~i~tp~~~   95 (383)
T 3oqb_A           75 LDAALADKNDTMFFDAATTQA   95 (383)
T ss_dssp             HHHHHHCSSCCEEEECSCSSS
T ss_pred             HHHHhcCCCCCEEEECCCchH
Confidence            9999976  899999999643

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.28  E-value=0.078  Score=48.01  Aligned_cols=101  Identities=11%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCC
Q 015895          163 LKGQTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREAD  238 (398)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aD  238 (398)
                      ...|+|.|.| .|.||+.+++.| ...| ++|++++|......+.         ...+....  ......+++++++.+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L-~~~G~~~V~~~~R~~~~~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQL-ADKQTIKQTLFARQPAKIHKP---------YPTNSQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHH-TTCTTEEEEEEESSGGGSCSS---------CCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHH-HhCCCceEEEEEcChhhhccc---------ccCCcEEEEecCCCHHHHHHHhcCCC
Confidence            4467999999 699999999998 5788 8999999886542110         00000000  0111234667889999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCC--CcEEEEcCCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKK--EAILVNCSRGP  275 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~--gailIN~aRG~  275 (398)
                      +|+.+.......  ...+..+..|++  ...||++|...
T Consensus        91 ~vv~~a~~~~~~--~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           91 IVYANLTGEDLD--IQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             EEEEECCSTTHH--HHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             EEEEcCCCCchh--HHHHHHHHHHHHcCCCEEEEEecce
Confidence            999877643221  112334444432  24788887744

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=95.26  E-value=0.08  Score=53.21  Aligned_cols=115  Identities=18%  Similarity=0.256  Sum_probs=71.1

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCCh---------hhHHHHHHhhhhhhhhhcCCCCccc-cccC
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTW-KRAS  228 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  228 (398)
                      |.++.|+||.|-|+|++|+..|+.| ...|++|+ +.|.+.         ...+.++.+       ..+. -..+ ....
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l-~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~-------~~g~-i~~~~a~~~  286 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFM-HDAGAKVIGISDANGGLYNPDGLDIPYLLDKRD-------SFGM-VTNLFTDVI  286 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHH-HHHTCEEEEEECSSCEEECTTCCCHHHHHHHCC-------SSSC-CGGGCSCCB
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHHHHH-------HhCC-CCCCCcEEe
Confidence            3579999999999999999999997 67899986 455541         111211111       1110 0000 1112


Q ss_pred             CHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          229 SMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       229 sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +-++++ ..||+++-|..     .+.|+.+....++ -.+++-.+-+.+- . +-.+.|.+..|
T Consensus       287 ~~~~i~~~~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~t-~-eA~~iL~~rGI  342 (424)
T 3k92_A          287 TNEELLEKDCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPTT-I-DATKILNERGV  342 (424)
T ss_dssp             CHHHHHHSCCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCBC-H-HHHHHHHHTTC
T ss_pred             cCccceeccccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCCC-H-HHHHHHHHCCC
Confidence            445654 57999987765     4667777777774 5577777888753 3 33455666555

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.24  E-value=0.029  Score=54.84  Aligned_cols=29  Identities=31%  Similarity=0.509  Sum_probs=23.9

Q ss_pred             eEEEEecChhHHHHHHHHHhcC-CcEEEEEc
Q 015895          167 TVGVIGAGRIGSAYARMMVEGF-KMNLIYYD  196 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~f-G~~V~~~d  196 (398)
                      +|||+|+|+||+.++|.+ ... +++|.+..
T Consensus         5 kVgI~G~GrIGr~l~R~l-~~~p~vevvaI~   34 (337)
T 3e5r_O            5 KIGINGFGRIGRLVARVA-LQSEDVELVAVN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHH-HTCSSEEEEEEE
T ss_pred             EEEEECcCHHHHHHHHHH-hCCCCeEEEEEE
Confidence            799999999999999987 444 67776654

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.23  E-value=0.056  Score=53.20  Aligned_cols=96  Identities=14%  Similarity=0.245  Sum_probs=54.8

Q ss_pred             CCeEEEEe-cChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          165 GQTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       165 gktvGIIG-lG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..+|+|+| +|.||+.+++.|. .. .+++.+.....+.. ..+.+.+ +++...-.....   ..+ ++.+..+|+|++
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~-~~p~~elvai~~~~~~g-~~~~~~~-~~~~~~v~~dl~---~~~-~~~~~~vDvVf~   88 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLA-NHPHFQVTLMTADRKAG-QSMESVF-PHLRAQKLPTLV---SVK-DADFSTVDAVFC   88 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHH-TCSSEEEEEEBCSTTTT-SCHHHHC-GGGTTSCCCCCB---CGG-GCCGGGCSEEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHH-cCCCcEEEEEeCchhcC-CCHHHhC-chhcCcccccce---ecc-hhHhcCCCEEEE
Confidence            46899999 9999999999984 44 45877775543221 1111111 111100000111   112 445678999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|... +.     +.....+.|+.+|+.+-
T Consensus        89 atp~~~-s~-----~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           89 CLPHGT-TQ-----EIIKELPTALKIVDLSA  113 (359)
T ss_dssp             CCCTTT-HH-----HHHHTSCTTCEEEECSS
T ss_pred             cCCchh-HH-----HHHHHHhCCCEEEECCc
Confidence            999532 22     22222277999999875

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.21  E-value=0.13  Score=49.84  Aligned_cols=95  Identities=16%  Similarity=0.092  Sum_probs=60.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHH---h----
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEV---L----  234 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~sl~el---l----  234 (398)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++.... + +       +++.|........  ....+++   .    
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~-~-------~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRL-E-V-------AKNCGADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-H-H-------HHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEcCCHHHH-H-H-------HHHhCCCEEEcCcccccHHHHHHHHhcccc
Confidence            478999999999999999985 89999999999876542 1 1       1122322110001  1112222   2    


Q ss_pred             -hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       235 -~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                       ...|+|+-++... .+    -...+..++++..++.++.
T Consensus       238 g~g~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          238 GDLPNVTIDCSGNE-KC----ITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SSCCSEEEECSCCH-HH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCCCCEEEECCCCH-HH----HHHHHHHHhcCCEEEEEec
Confidence             2589999888642 11    1456778899999988864

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.20  E-value=0.061  Score=50.26  Aligned_cols=40  Identities=25%  Similarity=0.170  Sum_probs=33.6

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ..+.||++.|.|. |-||+++|++|+ ..|++|++.+++...
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~   67 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLA-LEGAAVALTYVNAAE   67 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHH
Confidence            4689999999997 789999999984 789999988665543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.18  E-value=0.044  Score=52.73  Aligned_cols=109  Identities=17%  Similarity=0.287  Sum_probs=59.7

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      +|+|||.|.||..+|..++. .|. +|..+|...... +.....+.......+ .........+. +.++.||+|+++.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~-~~l~el~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMM-RGYDDLLLIARTPGKP-QGEALDLAHAAAELG-VDIRISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HTCSCEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECcCHHHHHHHHHHHh-CCCCEEEEEcCChhhH-HHHHHHHHHhhhhcC-CCeEEEECCCH-HHhCCCCEEEEeCC
Confidence            58999999999999988743 244 799999976432 211111100000011 11112222355 56899999999966


Q ss_pred             CChh-----------hhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          246 LDKT-----------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       246 lt~~-----------T~~li~--~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      ....           +..++-  .+.+....|++++|+++-  ++|.-+
T Consensus        77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~~t  123 (308)
T 2d4a_B           77 IGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDAMT  123 (308)
T ss_dssp             CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHHHH
Confidence            4321           111110  112333358899999854  455444

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.18  E-value=0.041  Score=53.83  Aligned_cols=94  Identities=16%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|||+| .|.||+.+.+.|. .. ..++.+.....+.. ..+.+.+ ..+.  +.....   ..++++ +..+|+|++|
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~-~~p~~elv~v~s~~~~g-~~~~~~~-~~~~--g~~~~~---~~~~~~-~~~vDvV~~a   75 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLAL-SHPYLEVKQVTSRRFAG-EPVHFVH-PNLR--GRTNLK---FVPPEK-LEPADILVLA   75 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH-TCTTEEEEEEBCSTTTT-SBGGGTC-GGGT--TTCCCB---CBCGGG-CCCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-cCCCcEEEEEECchhhC-chhHHhC-chhc--Cccccc---ccchhH-hcCCCEEEEc
Confidence            5799999 8999999999984 44 45777665432221 0110000 0010  101111   123444 4789999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|... +..+. .   ..++.|+.+|+.+-
T Consensus        76 ~g~~~-s~~~a-~---~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           76 LPHGV-FAREF-D---RYSALAPVLVDLSA  100 (345)
T ss_dssp             CCTTH-HHHTH-H---HHHTTCSEEEECSS
T ss_pred             CCcHH-HHHHH-H---HHHHCCCEEEEcCc
Confidence            99643 22222 1   22367888999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.15  E-value=0.11  Score=50.67  Aligned_cols=95  Identities=18%  Similarity=0.124  Sum_probs=60.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhh-----
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~sl~ell~-----  235 (398)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++.... + +       +++.|........  ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~-~-~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDKF-A-K-------AKEVGATECVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH-H-H-------HHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHH-H-H-------HHHhCCceEecccccchhHHHHHHHHhCC
Confidence            578999999999999999985 89999 899999876542 1 1       1122321110001  023433332     


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~g-ailIN~aR  273 (398)
                      ..|+|+-++.. +++    -...++.++++ ..++.++-
T Consensus       261 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          261 GVDFSFEVIGR-LDT----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHHBCTTTCEEEECSC
T ss_pred             CCcEEEECCCC-HHH----HHHHHHHhhcCCcEEEEecc
Confidence            47888888763 222    14567778888 88887753

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=95.14  E-value=0.44  Score=46.45  Aligned_cols=155  Identities=12%  Similarity=0.094  Sum_probs=86.7

Q ss_pred             ceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 015895           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (398)
Q Consensus        88 k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gkt  167 (398)
                      .+|+..+-.-..+. +.+..-+|+|.|.-+...-++  .+++=++.+.++++                   .|..+.|++
T Consensus       120 D~IviR~~~~~~~~-~lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~~-------------------~G~~l~glk  177 (339)
T 4a8t_A          120 DILMARVERHHSIV-DLANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP-------------------EGKKLEDCK  177 (339)
T ss_dssp             SEEEEECSSHHHHH-HHHHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC-------------------TTCCGGGCE
T ss_pred             CEEEEecCcHHHHH-HHHHhCCCCEEECCCCCcCcH--HHHHHHHHHHHHhh-------------------cCCCCCCCE
Confidence            45555543322222 334556799999865332221  23333333333110                   022589999


Q ss_pred             EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       168 vGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      |++||= +++..+.+..+ ..||++|.+..|..-   +......+.+   ....|   ..+....+++ .++++|+|..-
T Consensus       178 va~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~---a~~~g---~~v~~~~d~~-av~~aDvvytd  249 (339)
T 4a8t_A          178 VVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKN---CEVSG---GSFLVTDDAS-SVEGADFLYTD  249 (339)
T ss_dssp             EEEESSCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHH---HHHHC---CEEEEECCGG-GGTTCSEEEEC
T ss_pred             EEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHH---HHHcC---CEEEEECChh-HHcCCCEEEec
Confidence            999996 67888888876 589999999887431   1111100000   01112   1233346888 99999999863


Q ss_pred             c--CC--Ch----h----h--hhhccHHHHhcCCCCcEEEEcC
Q 015895          244 P--VL--DK----T----T--YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       244 ~--Pl--t~----~----T--~~li~~~~~~~mk~gailIN~a  272 (398)
                      +  +.  ..    +    -  .--++.+.++.+|++++|.-|.
T Consensus       250 ~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          250 VWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             CSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             CcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            2  11  11    1    0  1235788888888888888874

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.13  E-value=0.12  Score=52.19  Aligned_cols=120  Identities=14%  Similarity=0.109  Sum_probs=68.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEc--------CChh--hHHHHHHhhhh---hh----hhhcCCCCcc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQA--TRLEKFVTAYG---QF----LKANGEQPVT  223 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d--------~~~~--~~~~~~~~~~~---~~----~~~~~~~~~~  223 (398)
                      .++.|+|+.|=|+|++|+..|+.| ...|++|++.+        +..-  ..+..+.+.-.   .+    ....+.   .
T Consensus       231 ~~l~Gk~vaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~---~  306 (450)
T 4fcc_A          231 MGFEGMRVSVSGSGNVAQYAIEKA-MEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGL---V  306 (450)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTC---E
T ss_pred             CCcCCCEEEEeCCChHHHHHHHHH-HhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCc---E
Confidence            469999999999999999999998 68999998653        3211  11111111000   00    000010   0


Q ss_pred             ccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCC--cEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE--AILVNCSRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       224 ~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~g--ailIN~aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      +....++  +-..||+.+-|.     +.+.|+.+....++.+  .++++.+-+.+-.+ + .+.|.+..|.-
T Consensus       307 ~~~~~~i--~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl~  369 (450)
T 4fcc_A          307 YLEGQQP--WSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVLF  369 (450)
T ss_dssp             EEETCCG--GGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCEE
T ss_pred             EecCccc--ccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCEE
Confidence            0001111  124799887664     3567888888877654  47777777765433 3 24555555433

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.12  E-value=0.057  Score=53.26  Aligned_cols=134  Identities=12%  Similarity=0.145  Sum_probs=88.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      -.++-|+|.|.+|+.+|+.+ +.+|++|.++|+++...                          + .+-+..+|-++...
T Consensus       199 ~~~L~I~GaGhva~aLa~la-~~lgf~V~v~D~R~~~~--------------------------~-~~~fp~a~~v~~~~  250 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFA-SNVGFYTVVTDWRPNQC--------------------------E-KHFFPDADEIIVDF  250 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHH-HHHTEEEEEEESCGGGG--------------------------C-GGGCTTCSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCeEEEECCCcccc--------------------------c-cccCCCceEEecCC
Confidence            34799999999999999985 79999999999976421                          0 01134566555444


Q ss_pred             CCChhhhhhccHHHHhc--CCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEe--------ccCCCCCCCCCCCCCCCc
Q 015895          245 VLDKTTYHLINKERLAT--MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL--------DVFEDEPYMKPGLSEMKN  314 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~--mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAal--------DV~~~EP~~~~~L~~~~n  314 (398)
                      |          .+.+..  +.+++.+|=++++.-.|...|..+|++. ....++        -.....-.       ..+
T Consensus       251 p----------~~~~~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~~-~~YiG~iGSr~R~~rl~~~g~~-------~~r  312 (362)
T 3on5_A          251 P----------ADFLRKFLIRPDDFVLIMTHHFQKDQEILHFLLEKE-LRYIGILGSKERTRRLLQNRKP-------PDH  312 (362)
T ss_dssp             H----------HHHHHHSCCCTTCEEEECCSCHHHHHHHHHHHSSSC-CSEEEESSCHHHHHHHHTSCCC-------CTT
T ss_pred             H----------HHHHhhcCCCCCeEEEEEeCCchhhHHHHHHHhcCC-CCEEEEeCCHHHHHHHHhcCCc-------Hhh
Confidence            4          122333  5778888888898889988888888873 444443        11111100       112


Q ss_pred             eEEcC---CCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 015895          315 AIVVP---HIASASKWTREGMATLAALNVLGKIKGYP  348 (398)
Q Consensus       315 vilTP---Hia~~T~ea~~~~~~~~~~ni~~~l~g~~  348 (398)
                       +-+|   -|++.|.+   ..+.-++.+|.+..+|++
T Consensus       313 -i~~PIGL~Iga~tP~---EIAvSI~AEiia~~~~~~  345 (362)
T 3on5_A          313 -LYSPVGLSIDAQGPE---EIAISIVAQLIQLIRSRK  345 (362)
T ss_dssp             -EESSCSCCSCCCSHH---HHHHHHHHHHHHHHHHSC
T ss_pred             -eECCCCCCCCCCCHH---HHHHHHHHHHHHHHhCCC
Confidence             4444   26788874   566777788888888874

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.10  E-value=0.034  Score=54.19  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=25.3

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      +|||+|+|+||+.+.|.+...-.++|.+.+..
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~   34 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            79999999999999998743346787766544

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.09  E-value=0.082  Score=51.88  Aligned_cols=102  Identities=15%  Similarity=0.202  Sum_probs=57.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCC------cEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFK------MNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG------~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      ++|+|+| .|.+|+.+.+.| ...+      .++..+....+  .....   .+ +.+.  +.....+.. .+.++ +..
T Consensus        10 ~kVaIvGATG~vG~~llr~L-~~~~~~~~~~~ei~~l~s~~~agk~~~~---~~-~~l~--~~~~~~~~~-~~~~~-~~~   80 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLL-LGHPAYADGRLRIGALTAATSAGSTLGE---HH-PHLT--PLAHRVVEP-TEAAV-LGG   80 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-HTCHHHHTTSEEEEEEEESSCTTSBGGG---TC-TTCG--GGTTCBCEE-CCHHH-HTT
T ss_pred             CEEEEECCCCHHHHHHHHHH-HcCCCCCCccEEEEEEECCCcCCCchhh---hc-cccc--ccceeeecc-CCHHH-hcC
Confidence            6899999 999999999997 4554      46666643221  11110   00 0000  000111111 23334 568


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHH
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL  282 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL  282 (398)
                      +|+|++|+|...      .++....++.|+.+|+.|.---.+..+.
T Consensus        81 ~DvVf~alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~  120 (352)
T 2nqt_A           81 HDAVFLALPHGH------SAVLAQQLSPETLIIDCGADFRLTDAAV  120 (352)
T ss_dssp             CSEEEECCTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHH
T ss_pred             CCEEEECCCCcc------hHHHHHHHhCCCEEEEECCCccCCcchh
Confidence            999999999642      2333444467899999976544444343

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.08  E-value=0.046  Score=53.10  Aligned_cols=70  Identities=13%  Similarity=0.189  Sum_probs=44.9

Q ss_pred             CeEEEEecChhHHHHHHHHHh--c-----CCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--
Q 015895          166 QTVGVIGAGRIGSAYARMMVE--G-----FKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~--~-----fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--  235 (398)
                      -+|||||+|.||+.-++.++.  .     .+++| .++|+++... +.+.+.|       +..    ..+.+++++++  
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a-~~~a~~~-------g~~----~~~~d~~~ll~~~   74 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAV-RAAAGKL-------GWS----TTETDWRTLLERD   74 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHH-HHHHHHH-------TCS----EEESCHHHHTTCT
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHH-HHHHHHc-------CCC----cccCCHHHHhcCC
Confidence            379999999999987766521  1     12354 4678876542 2222222       211    23468999985  


Q ss_pred             cCCEEEEccCCC
Q 015895          236 EADVISLHPVLD  247 (398)
Q Consensus       236 ~aDiV~l~~Plt  247 (398)
                      +.|+|++++|..
T Consensus        75 ~iDaV~I~tP~~   86 (390)
T 4h3v_A           75 DVQLVDVCTPGD   86 (390)
T ss_dssp             TCSEEEECSCGG
T ss_pred             CCCEEEEeCChH
Confidence            479999999953

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.07  E-value=0.059  Score=52.99  Aligned_cols=101  Identities=17%  Similarity=0.269  Sum_probs=54.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEEEEc-CChhhH-HHHHHhhhhhh---hhh----cC------CCCccccccCC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYD-LYQATR-LEKFVTAYGQF---LKA----NG------EQPVTWKRASS  229 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~~V~~~d-~~~~~~-~~~~~~~~~~~---~~~----~~------~~~~~~~~~~s  229 (398)
                      .+|||+|+|+||+.+.|.| ... +++|.+.+ |..... ....+ .|.+.   +..    .+      ..........+
T Consensus        18 ikVgI~G~G~iGr~llR~l-~~~p~veivaindp~~~~~~~a~ll-~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~d   95 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRAC-MERNDITVVAINDPFMDVEYMAYLL-KYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKD   95 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTCSSCEEEEEECTTSCHHHHHHHH-HCCTTTCSCSSCEEECC-CEEETTEEEEEECCSC
T ss_pred             eEEEEECCCHHHHHHHHHH-HcCCCeEEEEecCCCCChhHhhhhh-cccccCCCCCCcEEEeCCEEEECCeEEEEEecCC
Confidence            3899999999999999987 444 67877665 333221 11110 11100   000    00      00111111224


Q ss_pred             HHHH-h--hcCCEEEEccCCChhhhhhccHHHHhcCCCCc--EEEEcCC
Q 015895          230 MDEV-L--READVISLHPVLDKTTYHLINKERLATMKKEA--ILVNCSR  273 (398)
Q Consensus       230 l~el-l--~~aDiV~l~~Plt~~T~~li~~~~~~~mk~ga--ilIN~aR  273 (398)
                      ++++ +  ..+|+|+.|+|.... +    +..-..++.|+  ++|+.+-
T Consensus        96 p~~i~w~~~~vDvV~eatg~~~s-~----e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           96 PAEIPWGASGAQIVCESTGVFTT-E----EKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCCS-H----HHHGGGGTTTCSEEEESSCC
T ss_pred             hHHCCcccCCCCEEEECCCchhh-H----HHHHHHHHcCCcEEEEeCCC
Confidence            5554 2  579999999995322 2    12234467788  8998864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.07  E-value=0.032  Score=49.87  Aligned_cols=73  Identities=16%  Similarity=0.072  Sum_probs=47.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      |+|.|.| .|.||+.+++.| ...|.+|++.+|+....... ..    ....   .........++.++++.+|+|+.+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~-~~----~~~~---~~~Dl~d~~~~~~~~~~~d~vi~~a   75 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKIE-NE----HLKV---KKADVSSLDEVCEVCKGADAVISAF   75 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHH-HTTTCEEEEECSCGGGCCCC-CT----TEEE---ECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCchHHHHHHHHH-HHCCCEEEEEEcCcccchhc-cC----ceEE---EEecCCCHHHHHHHhcCCCEEEEeC
Confidence            6899999 599999999998 57899999999986542100 00    0000   0000111234677889999998877


Q ss_pred             CCC
Q 015895          245 VLD  247 (398)
Q Consensus       245 Plt  247 (398)
                      ...
T Consensus        76 ~~~   78 (227)
T 3dhn_A           76 NPG   78 (227)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.03  E-value=0.054  Score=52.27  Aligned_cols=113  Identities=15%  Similarity=0.050  Sum_probs=68.0

Q ss_pred             CCeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhh-HHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCEEE
Q 015895          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS  241 (398)
Q Consensus       165 gktvGIIGlG~IG~~-vA~~la~~fG~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDiV~  241 (398)
                      .|+|.|||.|.+|.+ +|+.| +..|++|.++|....+ ..+.        ++..|.   .+..-.+.+++. ..+|+|+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L-~~~G~~V~~~D~~~~~~~~~~--------L~~~gi---~v~~g~~~~~l~~~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIA-KEAGFEVSGCDAKMYPPMSTQ--------LEALGI---DVYEGFDAAQLDEFKADVYV   71 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHH-HHTTCEEEEEESSCCTTHHHH--------HHHTTC---EEEESCCGGGGGSCCCSEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHH-HhCCCEEEEEcCCCCcHHHHH--------HHhCCC---EEECCCCHHHcCCCCCCEEE
Confidence            478999999999996 89887 7899999999987532 1111        222232   111112344555 5799998


Q ss_pred             Ecc--C-CChhhh-----h--hccH-HHHhc--CCC-CcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          242 LHP--V-LDKTTY-----H--LINK-ERLAT--MKK-EAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       242 l~~--P-lt~~T~-----~--li~~-~~~~~--mk~-gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      ...  | .+|+-.     +  ++.+ +.|..  ++. ..+-|-=+.|+.--..-+...|+..
T Consensus        72 ~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           72 IGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             ECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             ECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            863  3 223221     1  3333 34443  333 2455666778877666677777754

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=95.03  E-value=0.026  Score=55.25  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=29.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT  201 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~-~d~~~~~  201 (398)
                      .+|||.|||+||+.++|++ ..+|++|++ +||+...
T Consensus         8 ~kvgInGFGRIGrlv~R~~-~~~~veivainDp~~d~   43 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRAC-MEKGVKVVAVNDPFIDP   43 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECTTCCH
T ss_pred             eEEEEECCChHHHHHHHHH-HhCCCEEEEEeCCCCCh
Confidence            4799999999999999986 688999887 7876543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.01  E-value=0.028  Score=54.70  Aligned_cols=97  Identities=18%  Similarity=0.110  Sum_probs=62.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC-CHHH-HhhcCCEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDE-VLREADVIS  241 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sl~e-ll~~aDiV~  241 (398)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++.....  +       +++.|.......... ++.+ +....|+|+
T Consensus       179 ~g~~VlV~GaG~vG~~~~qla-k~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~v~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKRE--D-------AMKMGADHYIATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTHH--H-------HHHHTCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHH--H-------HHHcCCCEEEcCcCchHHHHHhhcCCCEEE
Confidence            478999999999999999985 789999999998765421  1       111232211111111 3322 224689999


Q ss_pred             EccCCC-hhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          242 LHPVLD-KTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       242 l~~Plt-~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      -+++.+ +++    -...++.++++..++.++..
T Consensus       249 d~~g~~~~~~----~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          249 VCASSLTDID----FNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             ECCSCSTTCC----TTTGGGGEEEEEEEEECCCC
T ss_pred             ECCCCCcHHH----HHHHHHHhcCCCEEEEecCC
Confidence            888752 111    13456778899999988653

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.01  E-value=0.13  Score=52.10  Aligned_cols=106  Identities=12%  Similarity=0.089  Sum_probs=66.8

Q ss_pred             ccCCCeEEEEecCh----------hHHHHHHHHHhcCCcEEEEEcCChhhH-HHHHHhhhhhhhhhcCCC-CccccccCC
Q 015895          162 LLKGQTVGVIGAGR----------IGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQ-PVTWKRASS  229 (398)
Q Consensus       162 ~l~gktvGIIGlG~----------IG~~vA~~la~~fG~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~s  229 (398)
                      .+.|++|+|+|+.-          -...+++.| ...|++|.+|||..... .......+  .. ..+.. ........+
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~  401 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYL-MDEGAHLHIYDPKVPREQIVVDLSHP--GV-SEDDQVSRLVTISKD  401 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHHHHHHCC---------CHHHHHEEECSS
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHH-HHCCCEEEEEcCccCHHHHhhhhccc--cc-cccccccCceeecCC
Confidence            48899999999863          778899998 68999999999985432 11100000  00 00000 001222357


Q ss_pred             HHHHhhcCCEEEEccCCChhhhhhccHHH-HhcCCCCcEEEEcCCC
Q 015895          230 MDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRG  274 (398)
Q Consensus       230 l~ell~~aDiV~l~~Plt~~T~~li~~~~-~~~mk~gailIN~aRG  274 (398)
                      +.+.++.||.|++++.- ++-+. ++-+. ...|+...+++|. |+
T Consensus       402 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~  444 (467)
T 2q3e_A          402 PYEACDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RR  444 (467)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SC
T ss_pred             HHHHHhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CC
Confidence            88899999999999985 34333 35444 4567776668886 54

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=94.99  E-value=0.038  Score=53.46  Aligned_cols=92  Identities=17%  Similarity=0.148  Sum_probs=62.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++.....  +       +++.|.... +   .+.+++.+..|+|+-+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~v-~---~~~~~~~~~~D~vid~  241 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARNEHKKQ--D-------ALSMGVKHF-Y---TDPKQCKEELDFIIST  241 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSSSTTHH--H-------HHHTTCSEE-E---SSGGGCCSCEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHH--H-------HHhcCCCee-c---CCHHHHhcCCCEEEEC
Confidence            578999999999999999985 899999999998765421  1       122232211 1   2223333378999888


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      +....     .-...+..++++..++.++..
T Consensus       242 ~g~~~-----~~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          242 IPTHY-----DLKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             CCSCC-----CHHHHHTTEEEEEEEEECCCC
T ss_pred             CCcHH-----HHHHHHHHHhcCCEEEEECCC
Confidence            77431     124677888999999988653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.98  E-value=0.099  Score=49.36  Aligned_cols=39  Identities=23%  Similarity=0.123  Sum_probs=34.0

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ..+.||++.|.|. |-||+++|++| ...|++|++.++...
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~   84 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAY-AREGADVAINYLPAE   84 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECCGGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            4689999999997 78999999998 478999999988743

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.98  E-value=0.14  Score=49.95  Aligned_cols=95  Identities=17%  Similarity=0.056  Sum_probs=60.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc--CCHHHHhh-----
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLR-----  235 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~sl~ell~-----  235 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +       +++.|.........  .++.+.+.     
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~v~~~~~~  264 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKFP--K-------AKALGATDCLNPRELDKPVQDVITELTAG  264 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--H-------HHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--H-------HHHhCCcEEEccccccchHHHHHHHHhCC
Confidence            578999999999999999985 89999 8999998765421  1       11223221110010  23433332     


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~g-ailIN~aR  273 (398)
                      ..|+|+-++.. +++    -...+..++++ ..++.++-
T Consensus       265 g~Dvvid~~G~-~~~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          265 GVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CccEEEECCCC-HHH----HHHHHHHhhcCCCEEEEECC
Confidence            47999888763 221    24567888888 88887754

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.98  E-value=0.056  Score=50.26  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=34.1

Q ss_pred             ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       160 g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ...+.||++.|.|. |.||+++|++| ...|++|++.+++...
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l-~~~G~~V~~~~~~~~~   54 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHL-GRLGAKVVVNYANSTK   54 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCCHH
Confidence            35699999999997 68999999998 4789999987765444

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=94.98  E-value=0.046  Score=55.03  Aligned_cols=105  Identities=19%  Similarity=0.266  Sum_probs=59.6

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCCh--------------hhHHHHHHhhhhhhhhhcCCCCccc
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ--------------ATRLEKFVTAYGQFLKANGEQPVTW  224 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~  224 (398)
                      |.++.|++|.|.|+|++|+.+|+.| ..+|++|+ +.|.+.              ...+.++.+..+ .+..   .+ +.
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L-~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g-~i~~---~~-~a  280 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNI-ERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANK-TLIG---FP-GA  280 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHH-HHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHC-C-----------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcC-Cccc---CC-Cc
Confidence            3479999999999999999999998 68999998 455552              012222211110 0000   00 00


Q ss_pred             cccCCHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh
Q 015895          225 KRASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (398)
Q Consensus       225 ~~~~sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v  277 (398)
                      . ..+.++++ ..||+++-|.+     .+.|+.+....++ ..+++-.+-+.+-
T Consensus       281 ~-~i~~~~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t  327 (421)
T 2yfq_A          281 E-RITDEEFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT  327 (421)
T ss_dssp             ---------------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC
T ss_pred             e-EeCccchhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC
Confidence            1 11223333 47999988765     4557788777773 6688888888764

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=94.97  E-value=0.038  Score=52.99  Aligned_cols=67  Identities=10%  Similarity=0.005  Sum_probs=46.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---------
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell---------  234 (398)
                      .++||||+ |.||+..++.+ +..+.++ .++|+++...  ..        .+.  . .....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~--------~~~--~-~~~~~~~~~~~ll~~~~~l~~~   69 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAI-KEVGGVLVASLDPATNVG--LV--------DSF--F-PEAEFFTEPEAFEAYLEDLRDR   69 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GG--------GGT--C-TTCEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCChHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HH--------Hhh--C-CCCceeCCHHHHHHHhhhhccc
Confidence            58999999 78999999987 5668765 4678776532  10        000  0 0122346888887         


Q ss_pred             -hcCCEEEEccCC
Q 015895          235 -READVISLHPVL  246 (398)
Q Consensus       235 -~~aDiV~l~~Pl  246 (398)
                       .+.|+|++++|.
T Consensus        70 ~~~vD~V~I~tP~   82 (312)
T 3o9z_A           70 GEGVDYLSIASPN   82 (312)
T ss_dssp             TCCCSEEEECSCG
T ss_pred             CCCCcEEEECCCc
Confidence             678999999995

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=94.97  E-value=0.045  Score=52.33  Aligned_cols=102  Identities=15%  Similarity=0.087  Sum_probs=63.2

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEE
Q 015895          167 TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (398)
Q Consensus       167 tvGIIGl-G~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l  242 (398)
                      ++.|+|. |++|+.+++.+ ...|.+ |...+|....                 ....+...+.+++|+.+  ..|++++
T Consensus        15 ~v~V~Gasg~~G~~~~~~l-~~~g~~~V~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~~~Dv~ii   76 (294)
T 2yv1_A           15 KAIVQGITGRQGSFHTKKM-LECGTKIVGGVTPGKGG-----------------QNVHGVPVFDTVKEAVKETDANASVI   76 (294)
T ss_dssp             CEEEETTTSHHHHHHHHHH-HHTTCCEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHHCCCEEEE
T ss_pred             EEEEECCCCCHHHHHHHHH-HhCCCeEEEEeCCCCCC-----------------ceECCEeeeCCHHHHhhcCCCCEEEE
Confidence            4788899 99999999997 567776 3355553210                 00012333568999988  8999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcE-EEEcCCC-chhcHHHHHHHHhcCCc
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAI-LVNCSRG-PVIDEVALVEHLKQNPM  291 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gai-lIN~aRG-~~vde~aL~~aL~~g~i  291 (398)
                      ++|. +.+...+ .+..+   .|.- +|..+.| ..-+++.|.++.++..+
T Consensus        77 ~vp~-~~~~~~v-~ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi  122 (294)
T 2yv1_A           77 FVPA-PFAKDAV-FEAID---AGIELIVVITEHIPVHDTMEFVNYAEDVGV  122 (294)
T ss_dssp             CCCH-HHHHHHH-HHHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             ccCH-HHHHHHH-HHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9994 3334433 22232   2332 4555555 23456678888887554

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.95  E-value=0.12  Score=50.29  Aligned_cols=95  Identities=15%  Similarity=0.024  Sum_probs=61.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc--CCHHHHhh-----
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLR-----  235 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~sl~ell~-----  235 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.... + +       +++.|.........  .++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~-~-~-------a~~lGa~~vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDKF-P-K-------AIELGATECLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGH-H-H-------HHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHH-H-H-------HHHcCCcEEEecccccchHHHHHHHHhCC
Confidence            578999999999999999985 88999 899999876542 1 1       12223221110010  23433332     


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~g-ailIN~aR  273 (398)
                      ..|+|+-++.. +++    -...+..++++ ..++.++-
T Consensus       261 g~Dvvid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          261 GVDYAVECAGR-IET----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHHhcCCCEEEEEcc
Confidence            47999988863 222    24667888888 88888764

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.95  E-value=0.082  Score=51.30  Aligned_cols=95  Identities=18%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCH-HHHh----
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSM-DEVL----  234 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~sl-~ell----  234 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.... + +       +++.|........   ..++ +++.    
T Consensus       171 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~-~-~-------a~~lGa~~vi~~~~~~~~~~~~~i~~~~~  240 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRL-S-K-------AKEIGADLVLQISKESPQEIARKVEGQLG  240 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHH-H-H-------HHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-H-H-------HHHhCCCEEEcCcccccchHHHHHHHHhC
Confidence            478999999999999999985 89999 999999876542 1 1       1222322110000   0111 1222    


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ...|+|+-++... .+    -...+..++++..++.++-
T Consensus       241 ~g~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          241 CKPEVTIECTGAE-AS----IQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             SCCSEEEECSCCH-HH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCCh-HH----HHHHHHHhcCCCEEEEEec
Confidence            2589999888642 11    1456788899999988864

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.95  E-value=0.028  Score=53.26  Aligned_cols=73  Identities=21%  Similarity=0.155  Sum_probs=44.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|+|+ |+||+.+++.++..-|+++. ++|+........   ..   ....+....++....++++++..+|+|+-+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~---d~---~~~~g~~~~~v~~~~dl~~~l~~~DvVIDf   79 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DA---GELAGAGKTGVTVQSSLDAVKDDFDVFIDF   79 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CT---TCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhh---hH---HHHcCCCcCCceecCCHHHHhcCCCEEEEc
Confidence            58999998 99999999986445678876 677654321000   00   000011111222235678888899999944


Q ss_pred             c
Q 015895          244 P  244 (398)
Q Consensus       244 ~  244 (398)
                      +
T Consensus        80 t   80 (273)
T 1dih_A           80 T   80 (273)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=94.94  E-value=0.53  Score=45.23  Aligned_cols=104  Identities=14%  Similarity=0.215  Sum_probs=66.9

Q ss_pred             ccC-CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          162 LLK-GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       162 ~l~-gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      .+. |++|+++|= +++..+.+..+ ..||++|.+..|..   ++......+.+   ....|   ..+....+++|.+++
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~---a~~~g---~~~~~~~d~~eav~~  214 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITA-AILGFEISIAMPKNYKISPEIWEFAMKQ---ALISG---AKISLGYDKFEALKD  214 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHH---HHHHT---CEEEEESCHHHHHTT
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHH---HHHcC---CeEEEEcCHHHHhcC
Confidence            478 999999996 57778888776 57899999987742   11111111100   01112   123345689999999


Q ss_pred             CCEEEEcc--CCCh--h--------hhhhccHHHHhcCCCCcEEEEcC
Q 015895          237 ADVISLHP--VLDK--T--------TYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       237 aDiV~l~~--Plt~--~--------T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|+|..-.  ....  +        ..--++.+.++.+|++++|.-|.
T Consensus       215 aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l  262 (307)
T 3tpf_A          215 KDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCL  262 (307)
T ss_dssp             CSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             CCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            99997644  1111  1        01236889999999999999885

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.94  E-value=0.055  Score=52.99  Aligned_cols=95  Identities=19%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-------
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-------  235 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-------  235 (398)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++.... + +.       ++.|..........++.+.+.       
T Consensus       182 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~-~-~a-------~~lGa~~vi~~~~~~~~~~i~~~~~~~~  251 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLA-RLAGATTVILSTRQATKR-R-LA-------EEVGATATVDPSAGDVVEAIAGPVGLVP  251 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHH-H-HH-------HHHTCSEEECTTSSCHHHHHHSTTSSST
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-H-HH-------HHcCCCEEECCCCcCHHHHHHhhhhccC
Confidence            478999999999999999985 89999 899998876542 1 11       122322111111234444433       


Q ss_pred             -cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          236 -EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       236 -~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                       ..|+|+-++.. +++    -...+..++++..++.++-
T Consensus       252 gg~Dvvid~~G~-~~~----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          252 GGVDVVIECAGV-AET----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEECCCC-HHH----HHHHHHHhccCCEEEEEec
Confidence             37888877753 221    2456777888888888764

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=94.94  E-value=0.13  Score=49.67  Aligned_cols=108  Identities=16%  Similarity=0.158  Sum_probs=61.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCC----hhhHHHHHHhhhhhhhhhcC-CCCccccccCCHHH
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLY----QATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDE  232 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~-------~V~~~d~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~e  232 (398)
                      ++|.|+|. |.||+.++..|+ ..|+       +|..+|+.    .. ..+.....    +.+.. ..........++.+
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~-~~~~~~~~~~~ev~l~Di~~~~~~~-~~~g~~~d----l~~~~~~~~~~i~~~~~~~~   79 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIA-NGDMLGKDQPVILQLLEIPNEKAQK-ALQGVMME----IDDCAFPLLAGMTAHADPMT   79 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHH-TTTTTCTTCCEEEEEECCSCHHHHH-HHHHHHHH----HHTTTCTTEEEEEEESSHHH
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCcCCCCCCEEEEEcCCCccccc-cchhhHHH----HhhhcccccCcEEEecCcHH
Confidence            58999997 999999999874 4554       89999987    32 11110000    11100 01111222357889


Q ss_pred             HhhcCCEEEEccCCCh---hhhh-hc--c----H---HHHhcC-CCCcEEEEcCCCchhcHHH
Q 015895          233 VLREADVISLHPVLDK---TTYH-LI--N----K---ERLATM-KKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       233 ll~~aDiV~l~~Plt~---~T~~-li--~----~---~~~~~m-k~gailIN~aRG~~vde~a  281 (398)
                      .++.||+|+++.....   .++. ++  |    .   +.+... ++.+++|+++  .++|.-.
T Consensus        80 al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S--NPv~~~t  140 (329)
T 1b8p_A           80 AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG--NPANTNA  140 (329)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHH
T ss_pred             HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc--CchHHHH
Confidence            9999999988764322   1111 11  1    1   123333 4788999998  3444443

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=94.93  E-value=0.092  Score=50.79  Aligned_cols=104  Identities=25%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             CCeEEEEe-cChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhcCC
Q 015895          165 GQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREAD  238 (398)
Q Consensus       165 gktvGIIG-lG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~sl~ell~~aD  238 (398)
                      .++|+|+| .|.+|+.++..|+ ..|  .+|..+|........  .+     +.... .+.....   ..++.+.++.||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~-~~g~~~ev~l~Di~~~~~~~--~d-----L~~~~-~~~~v~~~~~t~d~~~al~gaD   78 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMK-MNPLVSVLHLYDVVNAPGVT--AD-----ISHMD-TGAVVRGFLGQQQLEAALTGMD   78 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHH-HCTTEEEEEEEESSSHHHHH--HH-----HHTSC-SSCEEEEEESHHHHHHHHTTCS
T ss_pred             CCEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEeCCCcHhHH--HH-----hhccc-ccceEEEEeCCCCHHHHcCCCC
Confidence            36899999 8999999999874 456  789999976542110  00     11111 1111111   125678899999


Q ss_pred             EEEEccCCChh---hh-hh--cc----H---HHHhcCCCCcEEEEcCCCchhcH
Q 015895          239 VISLHPVLDKT---TY-HL--IN----K---ERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       239 iV~l~~Plt~~---T~-~l--i~----~---~~~~~mk~gailIN~aRG~~vde  279 (398)
                      +|+++.+....   ++ .+  .|    +   +.+....+.+++++.+  .++|.
T Consensus        79 vVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           79 LIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             EEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             EEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            99999764321   11 01  11    1   1222335778999875  45665

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.92  E-value=0.11  Score=50.57  Aligned_cols=95  Identities=18%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc-ccc-cCCHHHHhh-----
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKR-ASSMDEVLR-----  235 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~sl~ell~-----  235 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +.       ++.|..... ... ..++.+.+.     
T Consensus       190 ~g~~VlV~GaG~vG~~avqla-~~~Ga~~Vi~~~~~~~~~~--~~-------~~lGa~~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDKFA--RA-------KEFGATECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGHH--HH-------HHHTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--HH-------HHcCCceEeccccccccHHHHHHHHhCC
Confidence            578999999999999999985 78999 8999998765421  11       112221110 010 023433332     


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~g-ailIN~aR  273 (398)
                      ..|+|+-++... ++    -...+..++++ ..++.++-
T Consensus       260 g~D~vid~~g~~-~~----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          260 GVDYSFECIGNV-KV----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CBSEEEECSCCH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCcH-HH----HHHHHHhhccCCcEEEEEec
Confidence            479998888642 22    24667888888 88888764

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.91  E-value=0.14  Score=49.44  Aligned_cols=109  Identities=23%  Similarity=0.251  Sum_probs=64.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc--CCHHHHhhcCCEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~--~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~sl~ell~~aDiV  240 (398)
                      ++|+||| .|.||+++|..|+.  .+.-++..+|...... ....+     +.+. .........  .+..+.+++||+|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~-G~a~D-----l~~~-~~~~~v~~~~~~~~~~~~~~aDiv   73 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTP-GVAVD-----LSHI-PTAVKIKGFSGEDATPALEGADVV   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHH-HHHHH-----HHTS-CSSEEEEEECSSCCHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCch-hHHHH-----hhCC-CCCceEEEecCCCcHHHhCCCCEE
Confidence            4799999 89999999998754  3667999999875211 11111     1111 111111111  2456778999999


Q ss_pred             EEccCCC--h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHHHHH
Q 015895          241 SLHPVLD--K-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  283 (398)
Q Consensus       241 ~l~~Plt--~-~T~-~li--~~-------~~~~~mk~gailIN~aRG~~vde~aL~  283 (398)
                      +++.+..  + .|| .++  |.       +.+....|.+++++++  .++|.-..+
T Consensus        74 ii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           74 LISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             EECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            9987532  2 122 222  11       1233346788999996  566666544

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.86  E-value=0.092  Score=50.59  Aligned_cols=69  Identities=13%  Similarity=0.198  Sum_probs=43.8

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cCC
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-----~aD  238 (398)
                      .+|||||+|.||+.+++.+.+ .-++++ .++|+++......+.+.       .+..    ....+.+++++     ..|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~-------~g~~----~~~~~~e~ll~~~~~~~iD   73 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQR-------MGVT----TTYAGVEGLIKLPEFADID   73 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHH-------TTCC----EESSHHHHHHHSGGGGGEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHH-------cCCC----cccCCHHHHHhccCCCCCc
Confidence            479999999999999998744 346654 46777754311111111       1211    01245677764     579


Q ss_pred             EEEEccC
Q 015895          239 VISLHPV  245 (398)
Q Consensus       239 iV~l~~P  245 (398)
                      +|+.++|
T Consensus        74 vV~~atp   80 (312)
T 1nvm_B           74 FVFDATS   80 (312)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999999

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.85  E-value=0.033  Score=49.75  Aligned_cols=71  Identities=14%  Similarity=0.123  Sum_probs=47.3

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccc-cCCHHHHhhcCCEEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKR-ASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~sl~ell~~aDiV~  241 (398)
                      ++|.|.| .|.||+.+++.| ...|.+|++.+|+.......           .+....  .... ..++.++++++|+|+
T Consensus         1 M~ilItGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~-----------~~~~~~~~D~~d~~~~~~~~~~~~d~vi   68 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSL-STTDYQIYAGARKVEQVPQY-----------NNVKAVHFDVDWTPEEMAKQLHGMDAII   68 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHH-TTSSCEEEEEESSGGGSCCC-----------TTEEEEECCTTSCHHHHHTTTTTCSEEE
T ss_pred             CeEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCccchhhc-----------CCceEEEecccCCHHHHHHHHcCCCEEE
Confidence            4789999 799999999998 57899999999987542100           000000  0111 124566788899999


Q ss_pred             EccCCCh
Q 015895          242 LHPVLDK  248 (398)
Q Consensus       242 l~~Plt~  248 (398)
                      .+.....
T Consensus        69 ~~ag~~~   75 (219)
T 3dqp_A           69 NVSGSGG   75 (219)
T ss_dssp             ECCCCTT
T ss_pred             ECCcCCC
Confidence            8887543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.85  E-value=0.062  Score=51.92  Aligned_cols=95  Identities=14%  Similarity=0.152  Sum_probs=61.5

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhh-----c
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLR-----E  236 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sl~ell~-----~  236 (398)
                      .|+++.|+|. |.||+.+++.+ +..|++|++.+++.... +. .       +..+.... ......++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~V~~~~~~~~~~-~~-~-------~~~g~~~~~d~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYA-KAMGYRVLGIDGGEGKE-EL-F-------RSIGGEVFIDFTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSTTHH-HH-H-------HHTTCCEEEETTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCcEEEEcCCHHHH-HH-H-------HHcCCceEEecCccHhHHHHHHHHhCCC
Confidence            5789999999 89999999986 78999999999876442 11 1       11222111 0111134444433     4


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .|+|+.+....+     .-+..+..|+++..+|+++.
T Consensus       239 ~D~vi~~~g~~~-----~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          239 AHGVINVSVSEA-----AIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             EEEEEECSSCHH-----HHHHHTTSEEEEEEEEECCC
T ss_pred             CCEEEECCCcHH-----HHHHHHHHHhcCCEEEEEeC
Confidence            788888776321     12456778888888988865

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.76  E-value=0.038  Score=52.34  Aligned_cols=93  Identities=15%  Similarity=0.087  Sum_probs=57.9

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHhhcCCEEE
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLREADVIS  241 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sl~ell~~aDiV~  241 (398)
                      .|++|.|+|. |.||+..++.+ +.+|++|++.+++..... .        .++.+......... .++.+.+...|+|+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~-~--------~~~~ga~~~~~~~~~~~~~~~~~~~d~vi  194 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLA-L--------PLALGAEEAATYAEVPERAKAWGGLDLVL  194 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSH-H--------HHHTTCSEEEEGGGHHHHHHHTTSEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHhcCCCEEEECCcchhHHHHhcCceEEE
Confidence            4789999998 99999999985 789999999998764421 1        11122211100000 12223335678888


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      - +..  +    .-...+..++++..++.++-
T Consensus       195 d-~g~--~----~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          195 E-VRG--K----EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             E-CSC--T----THHHHHTTEEEEEEEEEC--
T ss_pred             E-CCH--H----HHHHHHHhhccCCEEEEEeC
Confidence            7 653  1    12566778888888887754

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=94.75  E-value=0.045  Score=52.63  Aligned_cols=67  Identities=19%  Similarity=0.239  Sum_probs=45.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---------
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell---------  234 (398)
                      .++||||+ |.||+..++.+ +..+.++ .++|+++...  ..        ...  .+ ....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~--------~~~--~~-~~~~~~~~~~ll~~~~~l~~~   69 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVG--II--------DSI--SP-QSEFFTEFEFFLDHASNLKRD   69 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GG--------GGT--CT-TCEEESSHHHHHHHHHHHTTS
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HH--------Hhh--CC-CCcEECCHHHHHHhhhhhhhc
Confidence            58999999 79999999987 5668765 4678776431  10        000  00 122346788887         


Q ss_pred             --hcCCEEEEccCC
Q 015895          235 --READVISLHPVL  246 (398)
Q Consensus       235 --~~aDiV~l~~Pl  246 (398)
                        .+.|+|++++|.
T Consensus        70 ~~~~vD~V~I~tP~   83 (318)
T 3oa2_A           70 SATALDYVSICSPN   83 (318)
T ss_dssp             TTTSCCEEEECSCG
T ss_pred             cCCCCcEEEECCCc
Confidence              578999999995

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.74  E-value=0.074  Score=50.97  Aligned_cols=94  Identities=18%  Similarity=0.110  Sum_probs=58.9

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHhh-----c
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLR-----E  236 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~sl~ell~-----~  236 (398)
                      .|+++.|.|. |.||+.+++.+ +..|++|++.+++.... +. .+       ..+......... .++.+.+.     .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~~-~~-------~~g~~~~~d~~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKI-AY-LK-------QIGFDAAFNYKTVNSLEEALKKASPDG  214 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HH-------HTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-HH-------hcCCcEEEecCCHHHHHHHHHHHhCCC
Confidence            5789999998 99999999986 78999999999875432 11 11       112111000011 23333332     3


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .|+++.+...  .+    -...+..++++..++.++-
T Consensus       215 ~d~vi~~~g~--~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          215 YDCYFDNVGG--EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEEESSCH--HH----HHHHHTTEEEEEEEEECCC
T ss_pred             CeEEEECCCh--HH----HHHHHHHHhcCCEEEEEec
Confidence            6888777752  11    2556777888888888764

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=94.71  E-value=0.05  Score=53.13  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=23.1

Q ss_pred             eEEEEecChhHHHHHHHHHhcC---CcEEEEEc
Q 015895          167 TVGVIGAGRIGSAYARMMVEGF---KMNLIYYD  196 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~f---G~~V~~~d  196 (398)
                      +|||+|+|+||+.+.|.|. ..   .++|.+.+
T Consensus         3 kVgInG~G~IGr~llR~l~-~~~~p~~eivaIn   34 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCWH-GRKDSPLDVVVIN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCCCCeEEEEEE
Confidence            7999999999999999874 43   46776544

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.70  E-value=0.087  Score=49.80  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ..+.||++.|.|.+   .||+++|++|+ ..|++|++.+++..
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la-~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVC-AQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHH-HCCCEEEEEeCChH
Confidence            46899999999986   89999999984 78999999998854

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.68  E-value=0.13  Score=47.26  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             ccCCCeEEEEec-Ch--hHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl-G~--IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ++.||++.|.|. |.  ||+++|+.|+ ..|++|+..++...
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~-~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLH-EAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEecCchH
Confidence            688999999997 55  9999999984 78999999988753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.66  E-value=0.043  Score=52.71  Aligned_cols=97  Identities=18%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----c
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-----~  236 (398)
                      -.|++|.|+|. |.||+.+++.+ +.+|++|++.+++.... +. .      .+..+..........++.+.+.     .
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~-~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAGGAEKC-RF-L------VEELGFDGAIDYKNEDLAAGLKRECPKG  218 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH-H------HHTTCCSEEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH-H------HHHcCCCEEEECCCHHHHHHHHHhcCCC
Confidence            35789999999 99999999986 78999999999876542 11 1      0122221111111123333222     3


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      .|+|+-++..  +    .-...+..++++..++.++..
T Consensus       219 ~d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          219 IDVFFDNVGG--E----ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             EEEEEESSCH--H----HHHHHHTTEEEEEEEEECCCG
T ss_pred             ceEEEECCCc--c----hHHHHHHHHhhCCEEEEEeec
Confidence            7888777652  1    235567788888888887653

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.66  E-value=0.034  Score=54.55  Aligned_cols=93  Identities=19%  Similarity=0.289  Sum_probs=60.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHHhhcCCEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~ell~~aDiV  240 (398)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++.....  +.       ++.|.... + ...+   .+++....|+|
T Consensus       194 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~Vi~~~~~~~~~~--~a-------~~lGa~~v-i-~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKRE--AA-------KALGADEV-V-NSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--HH-------HHHTCSEE-E-ETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HH-------HHcCCcEE-e-ccccHHHHHHhhcCCCEE
Confidence            478999999999999999985 899999999998765421  11       11222111 0 1111   22233467999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +-++.....     -...++.++++..++.++.
T Consensus       262 id~~g~~~~-----~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          262 LNTVAAPHN-----LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EECCSSCCC-----HHHHHTTEEEEEEEEECCC
T ss_pred             EECCCCHHH-----HHHHHHHhccCCEEEEecc
Confidence            888764211     1456778888888888865

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.66  E-value=0.056  Score=52.16  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=58.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-----~a  237 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.... +.        +++. ..........++.+.+.     ..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~-~~--------~~~l-a~~v~~~~~~~~~~~~~~~~~~g~  232 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVV-RASGAGPILVSDPNPYRL-AF--------ARPY-ADRLVNPLEEDLLEVVRRVTGSGV  232 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHH-GG--------GTTT-CSEEECTTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HH--------HHHh-HHhccCcCccCHHHHHHHhcCCCC
Confidence            788999999999999999985 89999 999999876432 10        1111 10000001123333332     47


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|+-++... ++    -+..+..++++..++.++.
T Consensus       233 D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          233 EVLLEFSGNE-AA----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEEECSCCH-HH----HHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCCH-HH----HHHHHHHHhcCCEEEEEec
Confidence            8888777631 11    1456677777778887754

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.65  E-value=0.11  Score=48.57  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+.||++.|.|.   |.||+++|+.|+ ..|++|++.++...
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   58 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFH-REGAQLAFTYATPK   58 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            488999999998   599999999984 78999999998763

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.63  E-value=0.052  Score=52.73  Aligned_cols=94  Identities=16%  Similarity=0.167  Sum_probs=59.5

Q ss_pred             CCCeEEEE-ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 015895          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (398)
Q Consensus       164 ~gktvGII-GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-----~a  237 (398)
                      .|++|.|+ |.|.||..+++.+ +..|++|++.+++.... + +.       ++.+..........++.+.+.     ..
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~-------~~lGa~~~~~~~~~~~~~~~~~~~~~g~  236 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKC-E-AC-------ERLGAKRGINYRSEDFAAVIKAETGQGV  236 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-H-HH-------HHHTCSEEEETTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-H-HH-------HhcCCCEEEeCCchHHHHHHHHHhCCCc
Confidence            57899999 6899999999986 79999999999877542 1 11       112221111111123333322     47


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|+-++..  +    .-...+..++++..++.++.
T Consensus       237 Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          237 DIILDMIGA--A----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEESCCG--G----GHHHHHHTEEEEEEEEECCC
T ss_pred             eEEEECCCH--H----HHHHHHHHhccCCEEEEEEe
Confidence            888877763  1    12456777888888888764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.56  E-value=0.064  Score=52.28  Aligned_cols=37  Identities=16%  Similarity=0.165  Sum_probs=32.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++...
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~  225 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIA-KATGAEVIVTSSSREK  225 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCchh
Confidence            578999999999999999985 8999999999987654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=94.56  E-value=0.089  Score=48.68  Aligned_cols=96  Identities=14%  Similarity=0.077  Sum_probs=57.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      .++|.|.|.|.||+.+++.| ...|.+|++.+|+...... .        ...+..... ....+++  +.++|+|+.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~-~--------~~~~~~~~~-~D~~d~~--~~~~d~vi~~a   71 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRAL-APQGWRIIGTSRNPDQMEA-I--------RASGAEPLL-WPGEEPS--LDGVTHLLIST   71 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHH-GGGTCEEEEEESCGGGHHH-H--------HHTTEEEEE-SSSSCCC--CTTCCEEEECC
T ss_pred             cCcEEEECCcHHHHHHHHHH-HHCCCEEEEEEcChhhhhh-H--------hhCCCeEEE-ecccccc--cCCCCEEEECC
Confidence            47899999999999999998 5779999999998754211 0        111110000 0122344  78899998887


Q ss_pred             CCChh----hhhhccHHHHhcC-CCCcEEEEcCCCc
Q 015895          245 VLDKT----TYHLINKERLATM-KKEAILVNCSRGP  275 (398)
Q Consensus       245 Plt~~----T~~li~~~~~~~m-k~gailIN~aRG~  275 (398)
                      .....    ++.+++.  +... ..-..+|.+|...
T Consensus        72 ~~~~~~~~~~~~l~~a--~~~~~~~~~~~v~~Ss~~  105 (286)
T 3ius_A           72 APDSGGDPVLAALGDQ--IAARAAQFRWVGYLSTTA  105 (286)
T ss_dssp             CCBTTBCHHHHHHHHH--HHHTGGGCSEEEEEEEGG
T ss_pred             CccccccHHHHHHHHH--HHhhcCCceEEEEeecce
Confidence            65432    3444322  2222 1224677776544

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.55  E-value=0.059  Score=50.19  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+.||++.|.|.   |.||+++|+.| ...|++|+..+++..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l-~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            478999999997   69999999998 478999999998764

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.54  E-value=0.11  Score=48.92  Aligned_cols=39  Identities=21%  Similarity=0.222  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEec-Ch--hHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~--IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ..+.||++.|.|. |.  ||+++|+.| ...|++|++.++...
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~l-a~~G~~V~~~~r~~~   68 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAA-REAGAELAFTYQGDA   68 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHH-HHTTCEEEEEECSHH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHH-HHCCCEEEEEcCCHH
Confidence            3589999999998 45  999999998 478999999998753

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=94.54  E-value=0.38  Score=48.69  Aligned_cols=136  Identities=18%  Similarity=0.177  Sum_probs=94.2

Q ss_pred             CceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 015895          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (398)
Q Consensus       109 gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~f  188 (398)
                      .|+|.|+.   -..+|=-+++-+|+.+|-                     .|+.|...+|.|.|.|.-|-.+|+.+ ...
T Consensus       187 ~ipvFnDD---~qGTA~V~lAgllnAlki---------------------~gk~l~d~riV~~GAGaAGigia~ll-~~~  241 (487)
T 3nv9_A          187 DIPVWHDD---QQGTASVTLAGLLNALKL---------------------VKKDIHECRMVFIGAGSSNTTCLRLI-VTA  241 (487)
T ss_dssp             SSCEEETT---THHHHHHHHHHHHHHHHH---------------------HTCCGGGCCEEEECCSHHHHHHHHHH-HHT
T ss_pred             cCCccccc---cchHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHH-HHc
Confidence            79999985   456788889988888872                     34578899999999999999999998 678


Q ss_pred             Cc---EEEEEcCCh----h-hHHHHHH-hhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHH
Q 015895          189 KM---NLIYYDLYQ----A-TRLEKFV-TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (398)
Q Consensus       189 G~---~V~~~d~~~----~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~  259 (398)
                      |.   +++.+|+..    . ..+..+. ..+...+..... +   ....+|.|+++.+|+++-.--.   ..+.+.++.+
T Consensus       242 G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n-~---~~~~~L~eav~~adVlIG~S~~---~pg~ft~e~V  314 (487)
T 3nv9_A          242 GADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTN-P---SKFGSIAEACVGADVLISLSTP---GPGVVKAEWI  314 (487)
T ss_dssp             TCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSC-T---TCCCSHHHHHTTCSEEEECCCS---SCCCCCHHHH
T ss_pred             CCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcc-c---ccCCCHHHHHhcCCEEEEeccc---CCCCCCHHHH
Confidence            98   899999752    1 1111100 000000000000 0   0235899999999987643310   1478999999


Q ss_pred             hcCCCCcEEEEcCCCch
Q 015895          260 ATMKKEAILVNCSRGPV  276 (398)
Q Consensus       260 ~~mk~gailIN~aRG~~  276 (398)
                      +.|.+..++.=.|....
T Consensus       315 ~~Ma~~PIIFaLSNPtp  331 (487)
T 3nv9_A          315 KSMGEKPIVFCCANPVP  331 (487)
T ss_dssp             HTSCSSCEEEECCSSSC
T ss_pred             HhhcCCCEEEECCCCCc
Confidence            99999999998887653

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=94.54  E-value=0.1  Score=52.77  Aligned_cols=107  Identities=13%  Similarity=0.160  Sum_probs=63.7

Q ss_pred             CeEEEEecChhHHHHHHHHHh---------cCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~---------~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~  235 (398)
                      .+|||||+|.||+.+++.+.+         +.+.+|. ++|++.... +.+.         .+     .....++++++.
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~-~~~~---------~~-----~~~~~d~~ell~   75 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKA-EALA---------GG-----LPLTTNPFDVVD   75 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHH-HHHH---------TT-----CCEESCTHHHHT
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHh-hhhc---------cc-----CcccCCHHHHhc
Confidence            479999999999999876521         2566654 556665432 2110         01     122468899986


Q ss_pred             --cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhcCCc
Q 015895          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (398)
Q Consensus       236 --~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~v-de~aL~~aL~~g~i  291 (398)
                        +.|+|+.++|.+.....+    ..+.++.|.-++..--+-.. +-++|.++.++.++
T Consensus        76 d~diDvVve~tp~~~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv  130 (444)
T 3mtj_A           76 DPEIDIVVELIGGLEPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGV  130 (444)
T ss_dssp             CTTCCEEEECCCSSTTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEcCCCchHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCC
Confidence              579999999953222222    23445666666654333222 23567777776544

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.54  E-value=0.064  Score=51.84  Aligned_cols=94  Identities=24%  Similarity=0.234  Sum_probs=58.3

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh----h--
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--  235 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell----~--  235 (398)
                      -.|++|.|+|. |.||...++.+ +.+|++|++.+++.... + +.       ++.+........ .++.+.+    .  
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~-------~~~ga~~v~~~~-~~~~~~v~~~~~~~  226 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIA-KGMGAKVIAVVNRTAAT-E-FV-------KSVGADIVLPLE-EGWAKAVREATGGA  226 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSGGGH-H-HH-------HHHTCSEEEESS-TTHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-H-HH-------HhcCCcEEecCc-hhHHHHHHHHhCCC
Confidence            35889999998 99999999985 79999999999876542 1 11       112221111111 2332222    1  


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ..|+|+-++...      .-...+..++++..++.++.
T Consensus       227 g~Dvvid~~g~~------~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          227 GVDMVVDPIGGP------AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             CEEEEEESCC--------CHHHHHHTEEEEEEEEEC--
T ss_pred             CceEEEECCchh------HHHHHHHhhcCCCEEEEEEc
Confidence            478888777631      22557777888888888753

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=94.51  E-value=0.15  Score=51.68  Aligned_cols=121  Identities=16%  Similarity=0.122  Sum_probs=65.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhh-hhh-----------hhhcCCCCccccccCCHHH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAY-GQF-----------LKANGEQPVTWKRASSMDE  232 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V-~~~d~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~sl~e  232 (398)
                      .+|||||+|.||+.+++.+.+.-++++ .++|+++... +...+.+ +..           +..... ........++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era-~~~a~~~yG~~~~~~~~~~~~~i~~a~~-~g~~~v~~D~ee  101 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNT-FKAIRTAYGDEENAREATTESAMTRAIE-AGKIAVTDDNDL  101 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHH-HHHHHHHHSSSTTEEECSSHHHHHHHHH-TTCEEEESCHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHhcCCccccccccchhhhhhhhc-cCCceEECCHHH
Confidence            479999999999999988743447775 4667776542 2221111 100           000000 001223478999


Q ss_pred             Hhh--cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc-hhcHHHHHHHHhcCCcc
Q 015895          233 VLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPMF  292 (398)
Q Consensus       233 ll~--~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~-~vde~aL~~aL~~g~i~  292 (398)
                      +++  ..|+|++++|.. +. |.  +-.+..++.|.-++...-+- ..+-+.|.++.++..+.
T Consensus       102 LL~d~dIDaVviaTp~p-~~-H~--e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          102 ILSNPLIDVIIDATGIP-EV-GA--ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             HHTCTTCCEEEECSCCH-HH-HH--HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HhcCCCCCEEEEcCCCh-HH-HH--HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            997  489999999853 21 11  22344455565555332211 12234566666654443

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=94.51  E-value=0.021  Score=52.24  Aligned_cols=69  Identities=22%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEE-EEcCChh-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCEE
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~-~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDiV  240 (398)
                      ++++|+|.|++|+.+++.+. ...|+++. ++|..+. ..-           . .......+...+++++++++  .|++
T Consensus        85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG-----------~-~~i~GvpV~~~~dL~~~v~~~~Id~v  152 (212)
T 3keo_A           85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVG-----------K-TTEDGIPVYGISTINDHLIDSDIETA  152 (212)
T ss_dssp             EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTT-----------C-BCTTCCBEEEGGGHHHHC-CCSCCEE
T ss_pred             CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccC-----------c-eeECCeEEeCHHHHHHHHHHcCCCEE
Confidence            47999999999999998631 35678866 5576654 310           0 00111223334678888874  8999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      ++++|.
T Consensus       153 IIAvPs  158 (212)
T 3keo_A          153 ILTVPS  158 (212)
T ss_dssp             EECSCG
T ss_pred             EEecCc
Confidence            999995

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.49  E-value=0.13  Score=50.25  Aligned_cols=95  Identities=19%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhh-----
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~sl~ell~-----  235 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++.... + +       +++.|........  ..++.+.+.     
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a-~~~Ga~~Vi~~~~~~~~~-~-~-------a~~lGa~~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGA-KTAGASRIIGIDIDSKKY-E-T-------AKKFGVNEFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHHTCSCEEEECSCTTHH-H-H-------HHTTTCCEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHH-H-H-------HHHcCCcEEEccccCchhHHHHHHHhcCC
Confidence            578999999999999999985 88999 899999876542 1 1       1222322111111  123333332     


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~g-ailIN~aR  273 (398)
                      ..|+|+-++.. +++    -...+..+++| ..++.++-
T Consensus       263 g~D~vid~~g~-~~~----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          263 GVDYSFECIGN-VSV----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHhhccCCEEEEEcc
Confidence            37888888763 221    24567778885 78877753

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.49  E-value=0.048  Score=50.66  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEe---cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIG---lG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+.||++.|.|   .|.||+++|+.| ...|++|++.+++...
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l-~~~G~~V~~~~r~~~~   45 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLR   45 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHH-HHTTCEEEEEECSCHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHH-HHCCCEEEEEecChHH
Confidence            47899999999   599999999998 4789999999987654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=94.47  E-value=0.051  Score=54.22  Aligned_cols=100  Identities=11%  Similarity=0.115  Sum_probs=57.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC---cEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhc--CC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLRE--AD  238 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sl~ell~~--aD  238 (398)
                      ++|+|+|.|.||+.+|+.|+ ..|   .+|.++|++.... +...+.+.... .....  ........++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~-~~g~~~~~V~v~~r~~~~~-~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMA-MNREVFSHITLASRTLSKC-QEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TCTTTCCEEEEEESCHHHH-HHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCceEEEEEECCHHHH-HHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            57999999999999999984 566   4999999987542 22222221100 00000  0001112357778887  89


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|+.++|... ...++ +   +.++.|..+++++-
T Consensus        79 vVin~ag~~~-~~~v~-~---a~l~~g~~vvD~a~  108 (405)
T 4ina_A           79 IVLNIALPYQ-DLTIM-E---ACLRTGVPYLDTAN  108 (405)
T ss_dssp             EEEECSCGGG-HHHHH-H---HHHHHTCCEEESSC
T ss_pred             EEEECCCccc-ChHHH-H---HHHHhCCCEEEecC
Confidence            9999988422 11221 1   22344566666533

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.46  E-value=0.088  Score=49.34  Aligned_cols=40  Identities=18%  Similarity=0.153  Sum_probs=33.9

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ..+.||++.|.|. |-||+++|++| ...|++|++.+++...
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~   65 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARAL-AASGFDIAITGIGDAE   65 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCCHH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHH-HHCCCeEEEEeCCCHH
Confidence            5689999999997 78999999998 4789999999864443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.44  E-value=0.077  Score=53.91  Aligned_cols=72  Identities=21%  Similarity=0.304  Sum_probs=48.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV  240 (398)
                      .|+|-|+|+|++|+.+|+.| ...|.+|++.|..+.. .+...+.+       +.. .-.....+   |+++ +++||++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L-~~~~~~v~vId~d~~~-~~~~~~~~-------~~~-~i~Gd~~~~~~L~~Agi~~ad~~   72 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENL-VGENNDITIVDKDGDR-LRELQDKY-------DLR-VVNGHASHPDVLHEAGAQDADML   72 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHT-CSTTEEEEEEESCHHH-HHHHHHHS-------SCE-EEESCTTCHHHHHHHTTTTCSEE
T ss_pred             cCEEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHH-HHHHHHhc-------CcE-EEEEcCCCHHHHHhcCCCcCCEE
Confidence            57899999999999999998 6889999999998754 22221111       111 00111222   4444 6889999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      +.+++.
T Consensus        73 ia~t~~   78 (461)
T 4g65_A           73 VAVTNT   78 (461)
T ss_dssp             EECCSC
T ss_pred             EEEcCC
Confidence            888875

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.43  E-value=0.17  Score=49.41  Aligned_cols=97  Identities=11%  Similarity=0.043  Sum_probs=51.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEEEE-cCChhhHHHHHHhhhh------h-----hh-hhcCCCCccccccCCHH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY-DLYQATRLEKFVTAYG------Q-----FL-KANGEQPVTWKRASSMD  231 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~~V~~~-d~~~~~~~~~~~~~~~------~-----~~-~~~~~~~~~~~~~~sl~  231 (398)
                      .+|||+|+|+||+.+++.+. .. +++|.+. |..+ .....+. .|.      .     .+ ...+ ....  ...+.+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~-~~~~~evvaV~d~~~-~~~~~l~-~~dg~s~~g~~~~~~~v~~~~~-~~l~--v~~~~~   76 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVS-MQDDMEVIGVTKTKP-DFEARLA-VEKGYKLFVAIPDNERVKLFED-AGIP--VEGTIL   76 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HSSSEEEEEEEESSC-SHHHHHH-HHTTCCEEESSCCHHHHHHHHH-TTCC--CCCBGG
T ss_pred             eEEEEECCCHHHHHHHHHHH-hCCCceEEEEecCCH-HHHHHHH-HhcCCccccccCCCceeecccC-CeEE--ECCchH
Confidence            37999999999999999874 44 5886655 4332 1111111 111      0     00 0000 0000  012355


Q ss_pred             HHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       232 ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +++.++|+|+.|+|.... ....  + -..++.|..+|..+
T Consensus        77 ~~~~~vDiV~eatg~~~s-~~~a--~-~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           77 DIIEDADIVVDGAPKKIG-KQNL--E-NIYKPHKVKAILQG  113 (343)
T ss_dssp             GTGGGCSEEEECCCTTHH-HHHH--H-HTTTTTTCEEEECT
T ss_pred             HhccCCCEEEECCCcccc-HHHH--H-HHHHHCCCEEEECC
Confidence            666799999999985321 1111  1 24566676666543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.43  E-value=0.14  Score=47.60  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=32.9

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      ..+.||++.|.|. |-||+++|+.| ...|++|++.|+.
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKL-AEEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEccc
Confidence            3689999999997 68999999998 4789999999886

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.42  E-value=0.24  Score=49.71  Aligned_cols=112  Identities=21%  Similarity=0.183  Sum_probs=69.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcC----------ChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDL----------YQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      .++.|+++.|.|+|++|+.+|+.| ...|++|+ +.|.          +.. .+.++.+..       +.. .++ .. +
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L-~~~GakVVavsD~~G~i~dp~Gld~~-~l~~~~~~~-------g~v-~~~-~~-~  281 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHA-ERLGMRVVAVATSMGGMYAPEGLDVA-EVLSAYEAT-------GSL-PRL-DL-A  281 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHH-HHHHHHHHH-------SSC-SCC-CB-C
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEcCCCeEECCCCCCHH-HHHHHHHhh-------CCc-cee-ec-c
Confidence            479999999999999999999998 68999998 5555          222 222221111       100 000 01 1


Q ss_pred             HHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       230 l~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      -++++ ..||+++-|..     .+.|+.+....++- .+++..|-+.+- .+| .+.|.+..+.
T Consensus       282 ~~e~~~~~~DVliP~A~-----~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          282 PEEVFGLEAEVLVLAAR-----EGALDGDRARQVQA-QAVVEVANFGLN-PEA-EAYLLGKGAL  337 (419)
T ss_dssp             TTTGGGSSCSEEEECSC-----TTCBCHHHHTTCCC-SEEEECSTTCBC-HHH-HHHHHHHTCE
T ss_pred             chhhhccCceEEEeccc-----ccccccchHhhCCc-eEEEECCCCcCC-HHH-HHHHHHCCCE
Confidence            12332 48999988764     45677777777753 488888888764 333 3445554443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.40  E-value=0.067  Score=52.19  Aligned_cols=95  Identities=12%  Similarity=0.068  Sum_probs=57.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-----~a  237 (398)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++.... + +.       ++.|..........++.+.+.     ..
T Consensus       190 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~~Vi~~~~~~~~~-~-~a-------~~lGa~~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRL-E-LA-------KQLGATHVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH-H-HH-------HHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHH-H-HH-------HHcCCCEEecCCccCHHHHHHHhcCCCC
Confidence            578999999999999999975 78999 799999876542 1 11       112221111011123322222     36


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|+-++.. +++    -...+..++++..++.++-
T Consensus       260 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          260 NFALESTGS-PEI----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEEECSCC-HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             cEEEECCCC-HHH----HHHHHHHHhcCCEEEEeCC
Confidence            888777753 111    1456677788777777754

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.36  E-value=0.31  Score=46.56  Aligned_cols=113  Identities=15%  Similarity=0.226  Sum_probs=62.0

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.||+.+|-.|+ +++--++..||.........-.+.... ........ ......+. +.++.||+|++..
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~-~~~~~~~~-~i~~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHA-AAGIDKYP-KIVGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH-HGGGTCCC-EEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcc-cccCCCCC-eEecCCCH-HHhCCCCEEEEec
Confidence            57999999999999998763 244458999998764321111111100 00011111 11112233 4579999999875


Q ss_pred             --CCCh-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHHHHH
Q 015895          245 --VLDK-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  283 (398)
Q Consensus       245 --Plt~-~T~-~li--~~-------~~~~~mk~gailIN~aRG~~vde~aL~  283 (398)
                        |..| .|| .++  |.       +.+..-.|+++++.++-  ++|.-..+
T Consensus        78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN--Pvd~~t~i  127 (294)
T 2x0j_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMTYI  127 (294)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC--cchhhHHh
Confidence              4333 233 222  22       23444567888888754  45554443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.35  E-value=0.13  Score=52.00  Aligned_cols=90  Identities=17%  Similarity=0.221  Sum_probs=62.6

Q ss_pred             cccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       161 ~~l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      ..++|++|+|+|+.          .=...+++.| +..|++|.+|||...+.....   +       +   .......++
T Consensus       329 ~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L-~~~Ga~V~~~DP~~~~~~~~~---~-------~---~~~~~~~~~  394 (444)
T 3vtf_A          329 GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL-LERGARVYVHDPMAMEKARAV---L-------G---DSVTYVEDP  394 (444)
T ss_dssp             TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECSSTHHHHHHH---H-------G---GGSEECSCH
T ss_pred             cccCCCEEEEEeeecCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChHHHHh---c-------C---CCceecCCH
Confidence            36899999999986          2377889998 799999999999875432211   1       0   112335689


Q ss_pred             HHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       231 ~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      +++++++|.|+++++- ++-+.+ +      + ++.+++|. |+
T Consensus       395 ~~a~~~aDavvi~t~h-~ef~~l-d------~-~~~vv~D~-Rn  428 (444)
T 3vtf_A          395 QALLDQVEGVIIATAW-PQYEGL-D------Y-RGKVVVDG-RY  428 (444)
T ss_dssp             HHHHHHCSEEEECSCC-GGGGGS-C------C-TTCEEEES-SC
T ss_pred             HHHHhCCCEEEEccCC-HHHhCC-C------c-CCCEEEEC-CC
Confidence            9999999999999974 232222 2      2 36788884 53

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.35  E-value=0.14  Score=51.37  Aligned_cols=93  Identities=20%  Similarity=0.178  Sum_probs=60.8

Q ss_pred             CCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHH-----HHHHhhhhhhhhhcCCCCccccccC
Q 015895          164 KGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRL-----EKFVTAYGQFLKANGEQPVTWKRAS  228 (398)
Q Consensus       164 ~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  228 (398)
                      .|++|+|+|+.          .-...+++.| ...|++|.+|||..+...     +.+...   ......     .....
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~  382 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEYIES---KIPHVS-----SLLVS  382 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHHHHH---TSHHHH-----TTBCS
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChhhccchhhhhccc---cccccc-----ccccC
Confidence            68999999997          6788999998 689999999999743211     111000   000000     01235


Q ss_pred             CHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       229 sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      ++.+.++.||.|++++.- ++-+.+ +   .+.|+ +.+++|+
T Consensus       383 ~~~~~~~~~d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~  419 (436)
T 1mv8_A          383 DLDEVVASSDVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL  419 (436)
T ss_dssp             CHHHHHHHCSEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred             CHHHHHhCCcEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence            788899999999999985 333322 2   34565 6788886

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.34  E-value=0.1  Score=49.93  Aligned_cols=78  Identities=21%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh--HHHHHHhhhhhhhhhcCCCCcc--ccccCCHHHHhh--c
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLR--E  236 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~sl~ell~--~  236 (398)
                      ..++|.|.|. |.||+.+++.| ...|.+|++.+|....  ......+.    +...+.....  .....++.++++  +
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~----l~~~~v~~~~~Dl~d~~~l~~~~~~~~   83 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATAS-LDAHRPTYILARPGPRSPSKAKIFKA----LEDKGAIIVYGLINEQEAMEKILKEHE   83 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHHHHHHH----HHHTTCEEEECCTTCHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCcHHHHHHHHHH-HHCCCCEEEEECCCCCChhHHHHHHH----HHhCCcEEEEeecCCHHHHHHHHhhCC
Confidence            4678999998 99999999998 5778999999987621  11110000    1111111100  111234667788  8


Q ss_pred             CCEEEEccCC
Q 015895          237 ADVISLHPVL  246 (398)
Q Consensus       237 aDiV~l~~Pl  246 (398)
                      +|+|+.+...
T Consensus        84 ~d~Vi~~a~~   93 (346)
T 3i6i_A           84 IDIVVSTVGG   93 (346)
T ss_dssp             CCEEEECCCG
T ss_pred             CCEEEECCch
Confidence            9998877764

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.31  E-value=0.24  Score=50.52  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=70.0

Q ss_pred             ccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCCccccccCC
Q 015895          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASS  229 (398)
Q Consensus       162 ~l~gktvGIIGlG----------~IG~~vA~~la~~fG~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s  229 (398)
                      .+.|++|+|+|+-          .-...+++.| ...|++|.+|||......  +.+...++... .    ........+
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~  405 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHL-MEEHAKLSVYDPKVQKSQMLNDLASVTSAQD-V----ERLITVESD  405 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHHHHHHHHHSCHHH-H----HHHEEEESS
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHH-HHCCCEEEEECCCCCchhhHHHHHhhhcccc-c----cCceeecCC
Confidence            5899999999973          5678899998 689999999999864321  11100000000 0    000122357


Q ss_pred             HHHHhhcCCEEEEccCCChhhhhhccHH-HHhcCCCCcEEEEcCCCchhcHHHH
Q 015895          230 MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVAL  282 (398)
Q Consensus       230 l~ell~~aDiV~l~~Plt~~T~~li~~~-~~~~mk~gailIN~aRG~~vde~aL  282 (398)
                      +.+.++.||.|++++.- ++-+. ++-+ ..+.|+...+++|. |+ ++|.+.+
T Consensus       406 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          406 PYAAARGAHAIVVLTEW-DEFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHHcCCCEEEEcCCc-HHhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            78889999999999985 33333 3544 44568877688886 54 4565543

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.30  E-value=0.05  Score=45.27  Aligned_cols=99  Identities=15%  Similarity=0.120  Sum_probs=66.1

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGl----G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|.|||.    |+.|..+.+.| +..|.+|+..+|.....                   .+...+.++.++-. -|+++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~dlp~-vDlav   63 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERL-KSHGHEFIPVGRKKGEV-------------------LGKTIINERPVIEG-VDTVT   63 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHH-HHHTCCEEEESSSCSEE-------------------TTEECBCSCCCCTT-CCEEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHH-HHCCCeEEEECCCCCcC-------------------CCeeccCChHHCCC-CCEEE
Confidence            57999998    67999999998 67788999999865321                   11223456777666 89999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      +++|. +.+..++.+- . .+...+++++.+-    .++++.+.+++..+.
T Consensus        64 i~~p~-~~v~~~v~e~-~-~~g~k~v~~~~G~----~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           64 LYINP-QNQLSEYNYI-L-SLKPKRVIFNPGT----ENEELEEILSENGIE  107 (122)
T ss_dssp             ECSCH-HHHGGGHHHH-H-HHCCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred             EEeCH-HHHHHHHHHH-H-hcCCCEEEECCCC----ChHHHHHHHHHcCCe
Confidence            99994 4555665432 2 2333456665432    356677777766554

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=94.28  E-value=0.055  Score=53.68  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=24.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhc--CCcEEEEEcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~--fG~~V~~~d~  197 (398)
                      .+|||+|+|+||+.++|.|...  -+++|++.+.
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd   36 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN   36 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEec
Confidence            3799999999999999987432  3478776543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.22  E-value=0.075  Score=51.82  Aligned_cols=94  Identities=17%  Similarity=0.107  Sum_probs=58.8

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-----~a  237 (398)
                      .|++|.|+| .|.||...++.+ +.+|++|++.+++.... +.        +++.|..........++.+.+.     ..
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~~~~~~~-~~--------~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKS-AF--------LKSLGCDRPINYKTEPVGTVLKQEYPEGV  232 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHH-HHTTCEEEEEESSHHHH-HH--------HHHTTCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEECCHHHH-HH--------HHHcCCcEEEecCChhHHHHHHHhcCCCC
Confidence            578999999 799999999985 78999999999875432 11        1112221110001123333332     46


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|+-++..  .    .-...+..++++..+|.++.
T Consensus       233 D~vid~~g~--~----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          233 DVVYESVGG--A----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEECSCT--H----HHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCH--H----HHHHHHHHHhcCCEEEEEeC
Confidence            888877763  1    12456677788888887764

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=94.20  E-value=0.064  Score=52.40  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=23.8

Q ss_pred             eEEEEecChhHHHHHHHHHhc--CCcEEEEEc
Q 015895          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  196 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~--fG~~V~~~d  196 (398)
                      +|||+|+|+||+.+.|.|...  -+++|.+.+
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            799999999999999987432  347877654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=94.18  E-value=0.28  Score=46.80  Aligned_cols=121  Identities=17%  Similarity=0.210  Sum_probs=64.2

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCC--cEEEEEcC--ChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG--~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++|+|+| .|.+|+.++..|+ ..|  .++..+|+  .... .+.....+..... .. .+..... .+ .+.++.||+|
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~-~~~~~~el~L~Di~~~~~~-~~~~~~dl~~~~~-~~-~~~~v~~-~~-~~a~~~aDvV   74 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIA-LRDIADEVVFVDIPDKEDD-TVGQAADTNHGIA-YD-SNTRVRQ-GG-YEDTAGSDVV   74 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCCSEEEEECCGGGHHH-HHHHHHHHHHHHT-TT-CCCEEEE-CC-GGGGTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEcCCCChhh-HHHHHHHHHHHHh-hC-CCcEEEe-CC-HHHhCCCCEE
Confidence            4799999 9999999998874 334  37888998  5432 1110000000000 00 1111111 23 5668999999


Q ss_pred             EEccCCChh---hh-hhc--c----H---HHHhcCCCCcEEEEcCCCchhcHHH--HHHH--HhcCCccEE
Q 015895          241 SLHPVLDKT---TY-HLI--N----K---ERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV  294 (398)
Q Consensus       241 ~l~~Plt~~---T~-~li--~----~---~~~~~mk~gailIN~aRG~~vde~a--L~~a--L~~g~i~gA  294 (398)
                      +++......   ++ .++  |    +   +.+....+.+++++.+-  ++|.-.  +.+.  +...++.|.
T Consensus        75 i~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN--Pv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN--PVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS--SHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC--hHHHHHHHHHHHcCCCHHHeeec
Confidence            988754321   11 111  1    1   23344477899999744  444433  3333  333456655

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.16  E-value=0.043  Score=52.93  Aligned_cols=69  Identities=16%  Similarity=0.159  Sum_probs=44.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhh---HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc--CCE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~--aDi  239 (398)
                      .++||||+|.+|+..++.+  .-+.++. ++|+++..   ..++..+       ..+   .+...+.++++++++  .|+
T Consensus         3 ~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~ll~~~~vD~   70 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAIS-------EMN---IKPKKYNNWWEMLEKEKPDI   70 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHH-------TTT---CCCEECSSHHHHHHHHCCSE
T ss_pred             eEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHH-------HcC---CCCcccCCHHHHhcCCCCCE
Confidence            4799999999999766653  4567766 57876531   2222111       112   111235789999975  899


Q ss_pred             EEEccCC
Q 015895          240 ISLHPVL  246 (398)
Q Consensus       240 V~l~~Pl  246 (398)
                      |++++|.
T Consensus        71 V~I~tp~   77 (337)
T 3ip3_A           71 LVINTVF   77 (337)
T ss_dssp             EEECSSH
T ss_pred             EEEeCCc
Confidence            9999994

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.13  E-value=0.11  Score=50.00  Aligned_cols=92  Identities=9%  Similarity=0.132  Sum_probs=59.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV  240 (398)
                      .+++.|+|+|++|+.+|+.| ...|. |++.|+++....  ..        ..+. ........+   ++++ +++||.|
T Consensus       115 ~~~viI~G~G~~g~~l~~~L-~~~g~-v~vid~~~~~~~--~~--------~~~~-~~i~gd~~~~~~L~~a~i~~a~~v  181 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRKK--VL--------RSGA-NFVHGDPTRVSDLEKANVRGARAV  181 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTG-GGSCE-EEEESCGGGHHH--HH--------HTTC-EEEESCTTSHHHHHHTCSTTEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHH-HhCCc-EEEEeCChhhhh--HH--------hCCc-EEEEeCCCCHHHHHhcChhhccEE
Confidence            56899999999999999997 68899 999998875421  11        1111 111111122   3444 6789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      +++++.+  ..++.-....+.+.+...+|--
T Consensus       182 i~~~~~d--~~n~~~~~~ar~~~~~~~iiar  210 (336)
T 1lnq_A          182 IVDLESD--SETIHCILGIRKIDESVRIIAE  210 (336)
T ss_dssp             EECCSSH--HHHHHHHHHHHTTCTTSEEEEE
T ss_pred             EEcCCcc--HHHHHHHHHHHHHCCCCeEEEE
Confidence            9999853  3444445667777777555443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.11  E-value=0.12  Score=49.07  Aligned_cols=109  Identities=13%  Similarity=0.112  Sum_probs=71.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ++|++|.|+|-.......++.| ...|.+|..+......                 ....+.....++.+.++++|+|++
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L-~~~g~~v~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~~d~ii~   66 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKL-TEQQADIYLVGFDQLD-----------------HGFTGAVKCNIDEIPFQQIDSIIL   66 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHH-HHTTCEEEEESCTTSS-----------------CCCTTEEECCGGGSCGGGCSEEEC
T ss_pred             ccCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeccccc-----------------cccccceeccchHHHHhcCCEEEe
Confidence            6788999999999999999998 6789998876321110                 000112223456677899999987


Q ss_pred             ccCCCh----------hhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEE
Q 015895          243 HPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (398)
Q Consensus       243 ~~Plt~----------~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA  294 (398)
                      -.|...          .+...++++.++.++++.+++ +   ++ |..++.+++.+..+.-.
T Consensus        67 ~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~-~---g~-~~~d~~~~~~~~gi~v~  123 (300)
T 2rir_A           67 PVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF-S---GI-SNAYLENIAAQAKRKLV  123 (300)
T ss_dssp             CSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE-E---SS-CCHHHHHHHHHTTCCEE
T ss_pred             ccccccCCcccccccccCCccchHHHHhhcCCCCEEE-E---ec-CCHHHHHHHHHCCCEEE
Confidence            544321          223347889999999998887 2   33 66665566655555443

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=94.10  E-value=0.088  Score=51.39  Aligned_cols=98  Identities=15%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCCh---h--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ---A--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .+|+|+| .|.+|+++.++|..--+.++.....+.   +  .....   .+ .+++  +.....+....+.+++++++|+
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~---~~-p~~~--~~~~~~v~~~~~~~~~~~~~Dv   78 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISD---LH-PQLK--GIVELPLQPMSDISEFSPGVDV   78 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHH---HC-GGGT--TTCCCBEEEESSGGGTCTTCSE
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHH---hC-cccc--CccceeEeccCCHHHHhcCCCE
Confidence            4799999 699999999998432456776664333   1  11111   10 0111  1111111111034555589999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      |++|+|.. .++.+. ...   .+.|+.+|+.|.-
T Consensus        79 vf~a~p~~-~s~~~~-~~~---~~~g~~vIDlSa~  108 (337)
T 3dr3_A           79 VFLATAHE-VSHDLA-PQF---LEAGCVVFDLSGA  108 (337)
T ss_dssp             EEECSCHH-HHHHHH-HHH---HHTTCEEEECSST
T ss_pred             EEECCChH-HHHHHH-HHH---HHCCCEEEEcCCc
Confidence            99999942 223222 222   4679999998753

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.08  E-value=0.083  Score=51.14  Aligned_cols=94  Identities=15%  Similarity=0.136  Sum_probs=57.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-h-----c
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-R-----E  236 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~-----~  236 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++.... + +.       ++.|..........++.+.+ +     .
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~-~-~~-------~~lGa~~vi~~~~~~~~~~v~~~t~g~g  235 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSRKHCC-D-IA-------LEYGATDIINYKNGDIVEQILKATDGKG  235 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCCHHHH-H-HH-------HHHTCCEEECGGGSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHH-H-HH-------HHhCCceEEcCCCcCHHHHHHHHcCCCC
Confidence            578999999999999999985 89999 899999876532 1 11       12232111111112222221 1     3


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      .|+|+-++... ++    -...+..++++..++.++
T Consensus       236 ~D~v~d~~g~~-~~----~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          236 VDKVVIAGGDV-HT----FAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEEECSSCT-TH----HHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCCCh-HH----HHHHHHHHhcCCEEEEec
Confidence            67887776532 11    245666777777777765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.05  E-value=0.099  Score=50.02  Aligned_cols=38  Identities=24%  Similarity=0.521  Sum_probs=32.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~  199 (398)
                      ..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La-~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLT-RCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCc
Confidence            4699999999999999999999985 4553 788888765

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=94.02  E-value=0.11  Score=49.78  Aligned_cols=106  Identities=19%  Similarity=0.146  Sum_probs=63.9

Q ss_pred             cCCC-eEEEEec-ChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--c-
Q 015895          163 LKGQ-TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E-  236 (398)
Q Consensus       163 l~gk-tvGIIGl-G~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~-  236 (398)
                      +.-+ ++.|+|. |++|+.+++.+ ...|.+ |...+|.....                 ...+...+.+++|+..  . 
T Consensus        10 ~~~~~~vvV~Gasg~~G~~~~~~l-~~~g~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~   71 (297)
T 2yv2_A           10 VDSETRVLVQGITGREGSFHAKAM-LEYGTKVVAGVTPGKGGS-----------------EVHGVPVYDSVKEALAEHPE   71 (297)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHCTT
T ss_pred             hCCCCEEEEECCCCCHHHHHHHHH-HhCCCcEEEEeCCCCCCc-----------------eECCEeeeCCHHHHhhcCCC
Confidence            3334 4777798 99999999987 556877 34556542100                 0012333568999887  5 


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcE-EEEcCCC-chhcHHHHHHHHhcCCc
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAI-LVNCSRG-PVIDEVALVEHLKQNPM  291 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gai-lIN~aRG-~~vde~aL~~aL~~g~i  291 (398)
                      .|++++++|- +.+...+. +..+   .|.- +|..+.| ..-+++.|.++.++..+
T Consensus        72 ~DvaIi~vp~-~~~~~~v~-ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi  123 (297)
T 2yv2_A           72 INTSIVFVPA-PFAPDAVY-EAVD---AGIRLVVVITEGIPVHDTMRFVNYARQKGA  123 (297)
T ss_dssp             CCEEEECCCG-GGHHHHHH-HHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEecCH-HHHHHHHH-HHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9999999994 34444442 2222   2332 4445555 22345678888877554

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.01  E-value=0.09  Score=50.44  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=57.8

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------h
Q 015895          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  235 (398)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell------~  235 (398)
                      -.|++|.|+| .|.||...++.+ +.+|++|++.+++.... + +.       ++.+..........++.+.+      .
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~-------~~~ga~~~~~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVASTDEKL-K-IA-------KEYGAEYLINASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH-H-HH-------HHTTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HH-------HHcCCcEEEeCCCchHHHHHHHHhCCC
Confidence            3578999999 899999999985 79999999999876542 1 11       11222111111112222221      1


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ..|+|+-++..  +    .-...+..++++..++.++.
T Consensus       217 g~D~vid~~g~--~----~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          217 GVDASFDSVGK--D----TFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             CEEEEEECCGG--G----GHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEEECCCh--H----HHHHHHHHhccCCEEEEEcC
Confidence            36777777652  1    12456667777777777653

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=93.98  E-value=0.13  Score=49.46  Aligned_cols=103  Identities=17%  Similarity=0.265  Sum_probs=66.2

Q ss_pred             ccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+.|++|+++|=|   ++..+.+..+ ..||++|.+..|..-.-.+...+    ..+..|   ..+....+++|.++++|
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~aD  223 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVE----ELREKG---MKVVETTTLEDVIGKLD  223 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHH----HHHHTT---CCEEEESCTHHHHTTCS
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHH-HHCCCEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHhcCCC
Confidence            4889999999984   8999999986 68999999998753210011111    112222   12333468999999999


Q ss_pred             EEEEccCCCh-----hhh------hhccHHHHhcCCCCcEEEEcC
Q 015895          239 VISLHPVLDK-----TTY------HLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       239 iV~l~~Plt~-----~T~------~li~~~~~~~mk~gailIN~a  272 (398)
                      +|..-.=..+     +.+      --++++.++.+|+++++.-|.
T Consensus       224 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          224 VLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             EEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             EEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            9976432111     111      224677777778888777763

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=93.89  E-value=0.15  Score=49.08  Aligned_cols=103  Identities=17%  Similarity=0.329  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.|++|+++|=   |++..+.+..+ ..| |++|.+..|..-.-.+...+    ..+..|   ..+....+++|.++++
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~a  222 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKG---IAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEECSCGGGTTTTC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCcccccCHHHHH----HHHHcC---CeEEEEcCHHHHhcCC
Confidence            488999999998   59999999987 588 99999998753211011101    112222   1233446899999999


Q ss_pred             CEEEEccCCCh----hh------hhhccHHHHhcCCCCcEEEEcC
Q 015895          238 DVISLHPVLDK----TT------YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       238 DiV~l~~Plt~----~T------~~li~~~~~~~mk~gailIN~a  272 (398)
                      |+|..-.=..+    +.      .--++++.++.+|+++++.-|.
T Consensus       223 Dvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             SEEEECC-----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             CEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            99976532211    11      1234677777778888777763

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=93.88  E-value=0.17  Score=47.23  Aligned_cols=40  Identities=23%  Similarity=0.152  Sum_probs=34.0

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ..+.||++.|.|. |.||+++|++|+ ..|++|++.+++...
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTE   65 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchH
Confidence            4578999999986 899999999984 789999999887643

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.86  E-value=0.19  Score=48.32  Aligned_cols=95  Identities=16%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-H---HHhh--
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-D---EVLR--  235 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl-~---ell~--  235 (398)
                      -.|.+|.|+|.|.+|...++.+ +.+ |.+|++.|++.... + +       +++.|........ .++ +   ++..  
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla-~~~g~~~Vi~~~~~~~~~-~-~-------~~~lGa~~~i~~~-~~~~~~v~~~t~g~  238 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQIL-RAVSAARVIAVDLDDDRL-A-L-------AREVGADAAVKSG-AGAADAIRELTGGQ  238 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESCHHHH-H-H-------HHHTTCSEEEECS-TTHHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHH-H-H-------HHHcCCCEEEcCC-CcHHHHHHHHhCCC
Confidence            3578999999999999999875 677 78999999877542 1 1       1223332211111 122 2   2222  


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ..|+|+-++... ++    -...+..++++..++.++-
T Consensus       239 g~d~v~d~~G~~-~~----~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          239 GATAVFDFVGAQ-ST----IDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             CEEEEEESSCCH-HH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCeEEEECCCCH-HH----HHHHHHHHhcCCEEEEECC
Confidence            689999888742 11    2456777888888888763

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.81  E-value=0.18  Score=47.48  Aligned_cols=82  Identities=15%  Similarity=0.103  Sum_probs=50.2

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC---CccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~sl~ell~~a  237 (398)
                      .+.|++|.|.|. |-||+.+++.| ...|.+|++.++..... +...+.+.... ..+..   ........+++++++.+
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~   84 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQL-LEHGYKVRGTARSASKL-ANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCcccH-HHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCC
Confidence            478899999998 99999999998 57799999999876532 11111000000 00000   00011223566777889


Q ss_pred             CEEEEccCC
Q 015895          238 DVISLHPVL  246 (398)
Q Consensus       238 DiV~l~~Pl  246 (398)
                      |+|+.+...
T Consensus        85 d~vih~A~~   93 (342)
T 1y1p_A           85 AGVAHIASV   93 (342)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeCCC
Confidence            999877643

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=93.79  E-value=1.3  Score=42.46  Aligned_cols=74  Identities=16%  Similarity=0.321  Sum_probs=50.0

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.|++|++||=   |++..+.+..+ ..| |++|.+..|..-.-.+.+.+    ..+..|   ..+....+++|.+++|
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~~G~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~a  219 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYAL-SLFENVEMYFVSPKELRLPKDIIE----DLKAKN---IKFYEKESLDDLDDDI  219 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEEESCGGGCCTTC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHH-HhcCCCEEEEECCcccccCHHHHH----HHHHcC---CEEEEEcCHHHHhcCC
Confidence            488999999998   58999999987 689 99999998753110011110    011222   1233346899999999


Q ss_pred             CEEEEc
Q 015895          238 DVISLH  243 (398)
Q Consensus       238 DiV~l~  243 (398)
                      |+|..-
T Consensus       220 Dvvy~~  225 (306)
T 4ekn_B          220 DVLYVT  225 (306)
T ss_dssp             SEEEEC
T ss_pred             CEEEeC
Confidence            999864

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.79  E-value=0.081  Score=50.60  Aligned_cols=94  Identities=13%  Similarity=0.074  Sum_probs=58.1

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hc
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell------~~  236 (398)
                      .|++|.|+| .|.||...++.+ +..|++|++.+++.... + +..       +.+..........++.+.+      ..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~~-------~~Ga~~~~~~~~~~~~~~~~~~~~~~g  209 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKA-A-HAK-------ALGAWETIDYSHEDVAKRVLELTDGKK  209 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH-H-HHH-------HHTCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHH-------HcCCCEEEeCCCccHHHHHHHHhCCCC
Confidence            578999999 899999999985 78999999999876542 1 111       1121111001112222221      24


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .|+|+-++..  +    .-...+..++++..++.++.
T Consensus       210 ~Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          210 CPVVYDGVGQ--D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             EEEEEESSCG--G----GHHHHHTTEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhcCCCEEEEEec
Confidence            7787777653  1    12456777888888888753

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.79  E-value=0.084  Score=50.40  Aligned_cols=94  Identities=13%  Similarity=0.086  Sum_probs=63.9

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHhhcCCEE
Q 015895          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVI  240 (398)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-l~ell~~aDiV  240 (398)
                      -.|.+|.|+| .|.||...++.+ +.+|++|++.++...  . ++..       +.|..........+ +.+.+...|+|
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~~~~~--~-~~~~-------~lGa~~~i~~~~~~~~~~~~~g~D~v  219 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTASKRN--H-AFLK-------ALGAEQCINYHEEDFLLAISTPVDAV  219 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEECHHH--H-HHHH-------HHTCSEEEETTTSCHHHHCCSCEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeccch--H-HHHH-------HcCCCEEEeCCCcchhhhhccCCCEE
Confidence            3578999997 999999999985 899999998874332  1 2222       22322111111233 66666789999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +-++..    .. + ...++.++++..++.++.
T Consensus       220 ~d~~g~----~~-~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          220 IDLVGG----DV-G-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             EESSCH----HH-H-HHHGGGEEEEEEEEECCS
T ss_pred             EECCCc----HH-H-HHHHHhccCCCEEEEeCC
Confidence            988863    11 2 667889999999999864

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=93.78  E-value=1.6  Score=41.58  Aligned_cols=69  Identities=16%  Similarity=0.092  Sum_probs=50.7

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+.|.+|+++|=   +++.++.+..+ ..||++|.+..|..-. ...        +..     .+.....+++|.++++|
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~-p~~--------~~~-----~g~~~~~d~~eav~~aD  207 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLL-NMFGAKIGVCGPKTLI-PRD--------VEV-----FKVDVFDDVDKGIDWAD  207 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGS-CTT--------GGG-----GCEEEESSHHHHHHHCS
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HHCCCEEEEECCchhC-Cch--------HHH-----CCCEEEcCHHHHhCCCC
Confidence            488999999997   89999999987 5899999998874311 000        011     12333578999999999


Q ss_pred             EEEEccCC
Q 015895          239 VISLHPVL  246 (398)
Q Consensus       239 iV~l~~Pl  246 (398)
                      +|.. +-.
T Consensus       208 vvy~-~~~  214 (291)
T 3d6n_B          208 VVIW-LRL  214 (291)
T ss_dssp             EEEE-CCC
T ss_pred             EEEE-eCc
Confidence            9987 554

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=93.77  E-value=0.056  Score=53.45  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=46.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcC--CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~f--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      -.+|||||.| +|+.-++.+ +..  ++++. ++|+.... .+.+.+.|       +     +..+.++++++++.|+++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~-~~~~~~~elvav~~~~~~~-a~~~a~~~-------g-----v~~~~~~~~l~~~~D~v~   71 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAF-MQPPEGLELVGLLAQGSAR-SRELAHAF-------G-----IPLYTSPEQITGMPDIAC   71 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTT-SSCCTTEEEEEEECCSSHH-HHHHHHHT-------T-----CCEESSGGGCCSCCSEEE
T ss_pred             CCEEEEEehH-HHHHHHHHH-HhCCCCeEEEEEECCCHHH-HHHHHHHh-------C-----CCEECCHHHHhcCCCEEE
Confidence            3579999999 799877765 344  57766 56887653 23322222       2     223578999999999999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      +++|..
T Consensus        72 i~~p~~   77 (372)
T 4gmf_A           72 IVVRST   77 (372)
T ss_dssp             ECCC--
T ss_pred             EECCCc
Confidence            999954

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=93.76  E-value=0.067  Score=49.40  Aligned_cols=38  Identities=18%  Similarity=0.132  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+.||++.|.|.   |.||+++|+.|+ ..|++|++.+++..
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHH-HHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            578999999997   699999999985 67999999998763

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=93.75  E-value=0.083  Score=51.33  Aligned_cols=94  Identities=16%  Similarity=0.201  Sum_probs=60.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHHhhcCCEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~ell~~aDiV  240 (398)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++..... ..       .++.|.....  ...+   +.++....|+|
T Consensus       180 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~~~~~~~~-~~-------~~~lGa~~vi--~~~~~~~~~~~~~g~D~v  248 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSNKKRE-EA-------LQDLGADDYV--IGSDQAKMSELADSLDYV  248 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSTTHHH-HH-------HTTSCCSCEE--ETTCHHHHHHSTTTEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCChHHHH-HH-------HHHcCCceee--ccccHHHHHHhcCCCCEE
Confidence            678999999999999999985 789999999998765421 10       0122322111  1122   22333457888


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +-++.....     -...+..++++..++.++-
T Consensus       249 id~~g~~~~-----~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          249 IDTVPVHHA-----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EECCCSCCC-----SHHHHTTEEEEEEEEECSC
T ss_pred             EECCCChHH-----HHHHHHHhccCCEEEEeCC
Confidence            888764211     2456677888888888864

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=93.74  E-value=0.11  Score=50.78  Aligned_cols=30  Identities=23%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             eEEEEecChhHHHHHHHHHhc---C-CcEEEEEcC
Q 015895          167 TVGVIGAGRIGSAYARMMVEG---F-KMNLIYYDL  197 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~---f-G~~V~~~d~  197 (398)
                      +|||+|+|+||+.+.|.|. .   . +++|.+.+.
T Consensus         4 kVgI~G~G~iGr~l~r~l~-~~~~~~~~eivai~~   37 (339)
T 2x5j_O            4 RVAINGFGRIGRNVVRALY-ESGRRAEITVVAINE   37 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTSGGGTEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHH-cCCCCCCEEEEEEeC
Confidence            7999999999999999874 4   3 678776654

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=93.72  E-value=0.12  Score=50.55  Aligned_cols=98  Identities=15%  Similarity=0.238  Sum_probs=51.0

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcC-CcEEEEEc-CChhhHHHHHHhhhhhhhhh----cCCCCccccccCCHHHHhhcCC
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYD-LYQATRLEKFVTAYGQFLKA----NGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~f-G~~V~~~d-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+|||+| +|.||+.+.+.| ... .+++.+.. ..... ...+.+.+. ++..    .+.....+.. .+.++ +..+|
T Consensus         5 ~kV~IiGAtG~iG~~llr~L-~~~p~~elvai~~s~~~~-g~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~~-~~~vD   79 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKML-AKHPYLELVKVSASPSKI-GKKYKDAVK-WIEQGDIPEEVQDLPIVS-TNYED-HKDVD   79 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHH-TTCSSEEEEEEECCGGGT-TSBHHHHCC-CCSSSSCCHHHHTCBEEC-SSGGG-GTTCS
T ss_pred             cEEEEECcCCHHHHHHHHHH-HhCCCcEEEEEecChhhc-CCCHHHhcC-cccccccccCCceeEEee-CCHHH-hcCCC
Confidence            5799999 899999999987 444 46777663 32211 011111110 0000    0000111111 13344 47899


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|++|+|.. .+..+. ..   .++.|+.+|+.+-
T Consensus        80 vVf~atp~~-~s~~~a-~~---~~~aG~~VId~s~  109 (350)
T 2ep5_A           80 VVLSALPNE-LAESIE-LE---LVKNGKIVVSNAS  109 (350)
T ss_dssp             EEEECCCHH-HHHHHH-HH---HHHTTCEEEECSS
T ss_pred             EEEECCChH-HHHHHH-HH---HHHCCCEEEECCc
Confidence            999999942 222221 22   2356778888764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.69  E-value=0.12  Score=47.81  Aligned_cols=36  Identities=25%  Similarity=0.159  Sum_probs=30.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      .+.||++.|.|. |.||+++|++|+ ..|++|++.++.
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~   41 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFA-QEGANVVLTYNG   41 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence            588999999997 689999999984 789999988443

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.67  E-value=0.1  Score=46.90  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcC--CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcC
Q 015895          163 LKGQTVGVIG-AGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (398)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~f--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~a  237 (398)
                      ..+|+|.|.| .|.||+.+++.|+ ..  |++|++.+++.... +.        + ..+....  ......+++++++.+
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~-~~~~g~~V~~~~r~~~~~-~~--------~-~~~~~~~~~D~~d~~~~~~~~~~~   70 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGK-EK--------I-GGEADVFIGDITDADSINPAFQGI   70 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHH-HTTTTCEEEEEESCHHHH-HH--------T-TCCTTEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHH-hcCCCcEEEEEEcCCCch-hh--------c-CCCeeEEEecCCCHHHHHHHHcCC
Confidence            3578999999 5999999999984 55  89999999976432 11        0 0010000  011123467788899


Q ss_pred             CEEEEccCC
Q 015895          238 DVISLHPVL  246 (398)
Q Consensus       238 DiV~l~~Pl  246 (398)
                      |+|+.+...
T Consensus        71 d~vi~~a~~   79 (253)
T 1xq6_A           71 DALVILTSA   79 (253)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeccc
Confidence            999887653

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=93.66  E-value=0.13  Score=49.86  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=63.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-----C--CcEEE-EEcCChhhHH-----HHHHhhhhhhhhhcCCCCccccccC---C
Q 015895          166 QTVGVIGAGRIGSAYARMMVEG-----F--KMNLI-YYDLYQATRL-----EKFVTAYGQFLKANGEQPVTWKRAS---S  229 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~-----f--G~~V~-~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---s  229 (398)
                      .+|||||+|.||+.+++.+.+.     .  +++|. ++|++.....     +.+.+.+    .. +  ... ....   +
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~----~~-~--~~~-~~~~~~~d   78 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYK----EK-G--SLD-SLEYESIS   78 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHH----HT-T--CGG-GCCSEECC
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhh----cc-C--Ccc-cccCCCCC
Confidence            4799999999999999887431     1  35654 5676653211     0010000    00 0  000 0122   7


Q ss_pred             HHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcCC
Q 015895          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNP  290 (398)
Q Consensus       230 l~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g~  290 (398)
                      +++++ ...|+|+.++|.. .|...--+-..+.++.|.-+|.+.-..+ -+-++|.++.++..
T Consensus        79 ~~~ll~~~iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~g  140 (331)
T 3c8m_A           79 ASEALARDFDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNN  140 (331)
T ss_dssp             HHHHHHSSCSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcC
Confidence            88887 4689999999974 2222212234455667777776544333 23355776665544

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=93.65  E-value=0.059  Score=49.58  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=31.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      .+.||++.|.|. |.||+.+|++| ...|++|++.++.
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l-~~~G~~v~~~~r~   54 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIEL-GRRGASVVVNYGS   54 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCC
Confidence            588999999986 89999999998 4789999999883

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.64  E-value=0.11  Score=49.57  Aligned_cols=37  Identities=14%  Similarity=0.034  Sum_probs=32.4

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|++|.|.| .|.||..+++.+ +..|++|++.+++...
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~V~~~~~~~~~  177 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQK  177 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            578999999 799999999986 7889999999987643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.63  E-value=0.071  Score=51.35  Aligned_cols=95  Identities=15%  Similarity=0.089  Sum_probs=56.9

Q ss_pred             cCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------h
Q 015895          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  235 (398)
Q Consensus       163 l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell------~  235 (398)
                      -.|++|.|+|.| .||...++.+ +.+|++|++.+++.... + +.       ++.+..........++.+.+      .
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~-------~~lga~~~~~~~~~~~~~~~~~~~~~~  212 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHT-E-EL-------LRLGAAYVIDTSTAPLYETVMELTNGI  212 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSSTTH-H-HH-------HHHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH-H-HH-------HhCCCcEEEeCCcccHHHHHHHHhCCC
Confidence            357899999998 9999999985 78999999999876542 1 11       11122111001112232221      1


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ..|+|+-++.. +.+     .+.+..++++..++.++-
T Consensus       213 g~Dvvid~~g~-~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          213 GADAAIDSIGG-PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             CEEEEEESSCH-HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCCC-hhH-----HHHHHHhcCCCEEEEEee
Confidence            46777777652 221     234467788888887754

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=93.61  E-value=0.095  Score=49.61  Aligned_cols=36  Identities=17%  Similarity=0.201  Sum_probs=31.3

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .||+|.|.|. |-||+.+++.| ...|++|++.++...
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L-~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLL-LEKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEECCCc
Confidence            5789999997 99999999998 467999999998764

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=93.56  E-value=0.13  Score=48.20  Aligned_cols=40  Identities=23%  Similarity=0.206  Sum_probs=31.6

Q ss_pred             cccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      ...++.||++.|.|. |.||+++|+.|+ ..|++|++.++..
T Consensus        17 ~~~~l~~k~~lVTGas~gIG~aia~~L~-~~G~~V~~~~r~~   57 (288)
T 2x9g_A           17 RGSHMEAPAAVVTGAAKRIGRAIAVKLH-QTGYRVVIHYHNS   57 (288)
T ss_dssp             -----CCCEEEETTCSSHHHHHHHHHHH-HHTCEEEEEESSC
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCeEEEEeCCc
Confidence            335689999999986 899999999984 7799999999886

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.55  E-value=0.071  Score=51.46  Aligned_cols=37  Identities=11%  Similarity=0.178  Sum_probs=32.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcC--CcEEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~f--G~~V~~~d~~~~~  201 (398)
                      .|.+|.|+|.|.||...++.+ +.+  |++|++.+++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqla-k~~~~Ga~Vi~~~~~~~~  208 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQIL-KALMKNITIVGISRSKKH  208 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHH-HHHCTTCEEEEECSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHhcCCCEEEEEeCCHHH
Confidence            688999999999999999985 788  9999999987654

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.53  E-value=0.037  Score=51.52  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=31.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+|+|.|.|.|-||+.+++.| ...|.+|++.++..+
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRL-TAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHH-HHTTCCEEEEECTTS
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            357899999999999999998 577999999998754

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=93.48  E-value=0.093  Score=48.45  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       162 ~l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      .+.||++.|.|.   |.||+++|++| ...|++|+..+++.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l-~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQND   45 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESST
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEEcCcH
Confidence            478999999997   69999999998 47899999998876

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.48  E-value=0.2  Score=47.30  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=34.2

Q ss_pred             cccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       159 ~g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      +...+.||++.|.|. |.||+++|++|+ ..|++|++.|+.
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~   61 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLA-REGADIIAIDVC   61 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEecc
Confidence            445799999999997 789999999984 789999999886

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.41  E-value=0.14  Score=49.27  Aligned_cols=37  Identities=19%  Similarity=0.166  Sum_probs=32.7

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+++.|+|. |.||+.+++.+ +.+|++|++.+++...
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a-~~~G~~Vi~~~~~~~~  203 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDK  203 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            5789999999 99999999986 7899999999987643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.41  E-value=0.15  Score=49.16  Aligned_cols=37  Identities=27%  Similarity=0.483  Sum_probs=32.8

Q ss_pred             CCCeEEEE-ecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGII-GlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|++|.|+ |.|.||...++.+ +.+|++|++.+++...
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~  187 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIA-KAYGLRVITTASRNET  187 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCSHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            68899999 7999999999985 7999999999987643

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=93.38  E-value=0.12  Score=50.61  Aligned_cols=38  Identities=26%  Similarity=0.409  Sum_probs=31.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~  199 (398)
                      ..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|+..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La-~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILA-TSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-hCCCCeEEEECCCc
Confidence            4589999999999999999999985 5564 788888753

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=93.36  E-value=0.45  Score=46.58  Aligned_cols=94  Identities=13%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CCeEEEEe-cChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          165 GQTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       165 gktvGIIG-lG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      -.+||||| .|.+|+++.|+|. .. ..++.......+.- ..+.+.+ .+++    ....+.. .+.++++.++|+|++
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~-~hP~~el~~l~S~~~aG-~~~~~~~-p~~~----~~l~~~~-~~~~~~~~~~Dvvf~   84 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLK-NHPEAKITYLSSRTYAG-KKLEEIF-PSTL----ENSILSE-FDPEKVSKNCDVLFT   84 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHH-HCTTEEEEEEECSTTTT-SBHHHHC-GGGC----CCCBCBC-CCHHHHHHHCSEEEE
T ss_pred             eeEEEEECCCCHHHHHHHHHHH-cCCCcEEEEEeCccccc-CChHHhC-hhhc----cCceEEe-CCHHHhhcCCCEEEE
Confidence            34799997 5999999999984 44 45666665432210 0111111 1111    1122222 256676688999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|.. .+     ++....+ .|+.+||.|.
T Consensus        85 alp~~-~s-----~~~~~~~-~g~~VIDlSs  108 (351)
T 1vkn_A           85 ALPAG-AS-----YDLVREL-KGVKIIDLGA  108 (351)
T ss_dssp             CCSTT-HH-----HHHHTTC-CSCEEEESSS
T ss_pred             CCCcH-HH-----HHHHHHh-CCCEEEECCh
Confidence            99953 22     3444455 7999999985

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=93.34  E-value=0.079  Score=51.61  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=24.2

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcC
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~  197 (398)
                      +|||+|+|+||+.+.|.+... +++|.+.+.
T Consensus         2 kVgInG~G~IGr~vlr~l~~~-~~evvaind   31 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSR-GVEVALIND   31 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCEEEEEec
Confidence            799999999999999987434 788775443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.34  E-value=0.15  Score=52.03  Aligned_cols=64  Identities=19%  Similarity=0.191  Sum_probs=45.9

Q ss_pred             CCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      +|+|.|.| .|.||+.+++.| ...|.+|++.+++.....                 ...+.....+.+.+.++|+|+.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L-~~~G~~V~~l~R~~~~~~-----------------~v~~d~~~~~~~~l~~~D~Vih~  208 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQL-QTGGHEVIQLVRKEPKPG-----------------KRFWDPLNPASDLLDGADVLVHL  208 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESSSCCTT-----------------CEECCTTSCCTTTTTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCCCcc-----------------ceeecccchhHHhcCCCCEEEEC
Confidence            78999999 699999999998 577999999998764310                 00011112345677899999876


Q ss_pred             cCC
Q 015895          244 PVL  246 (398)
Q Consensus       244 ~Pl  246 (398)
                      ...
T Consensus       209 A~~  211 (516)
T 3oh8_A          209 AGE  211 (516)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.24  E-value=0.15  Score=50.00  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=32.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~  201 (398)
                      .|.+|.|+|.|.||...++.+ +.+| .+|++.+++...
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~  232 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNR  232 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHH-HHcCCceEEEEcCCHHH
Confidence            578999999999999999985 8999 599999987654

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=93.23  E-value=0.066  Score=52.01  Aligned_cols=104  Identities=16%  Similarity=0.155  Sum_probs=60.3

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCc--c-ccccCCHHHHhhcCC
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV--T-WKRASSMDEVLREAD  238 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~sl~ell~~aD  238 (398)
                      .+|+|.|.|. |.||+.+++.| ...|.+|++.++..+......       +... +....  . .....++.++++.+|
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~-------l~~~~~v~~v~~D~l~d~~~l~~~~~~~d   75 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKGLIAEE-------LQAIPNVTLFQGPLLNNVPLMDTLFEGAH   75 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCSHHHHH-------HHTSTTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCChhhHHH-------HhhcCCcEEEECCccCCHHHHHHHHhcCC
Confidence            3678999995 99999999998 467899999988765321110       1100 10000  0 111124677789999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCC-C--cEEEEcCCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKK-E--AILVNCSRGP  275 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~-g--ailIN~aRG~  275 (398)
                      +|+.+...............+..+++ |  ..||++|...
T Consensus        76 ~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           76 LAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            99877654311112223444444432 3  3788887754

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.22  E-value=0.075  Score=52.76  Aligned_cols=41  Identities=22%  Similarity=0.519  Sum_probs=32.6

Q ss_pred             cccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       157 ~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +|++....+++|+|+|-|..|+.+++.+ +.+|.+|+++| +.
T Consensus        16 ~~~~~mm~~~~I~ilGgG~lg~~l~~aa-~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           16 YFQGHMWNSRKVGVLGGGQLGRMLVESA-NRLNIQVNVLD-AD   56 (403)
T ss_dssp             -----CCSCCEEEEECCSHHHHHHHHHH-HHHTCEEEEEE-ST
T ss_pred             eEeccCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEE-CC
Confidence            4555567799999999999999999986 78999999999 54

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=93.22  E-value=0.19  Score=49.09  Aligned_cols=105  Identities=13%  Similarity=0.089  Sum_probs=60.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HH-----------HHhhhhhhhhhcCCCCcccc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EK-----------FVTAYGQFLKANGEQPVTWK  225 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~-~~-----------~~~~~~~~~~~~~~~~~~~~  225 (398)
                      ..|.+++|.|||+|.+|.++|+.|+ ..|. ++..+|...-..  + ++           ..+.....+.+.... +.+.
T Consensus        32 ~~L~~~~VlivG~GGlG~~ia~~La-~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~-v~v~  109 (346)
T 1y8q_A           32 KRLRASRVLLVGLKGLGAEIAKNLI-LAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPM-VDVK  109 (346)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTT-SEEE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCC-eEEE
Confidence            4588999999999999999999985 4565 788898653100  0 00           000111112221110 0011


Q ss_pred             cc-----CCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          226 RA-----SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       226 ~~-----~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      ..     ...+++++++|+|+.+. .+.+++..+++.....   +..+|.+
T Consensus       110 ~~~~~~~~~~~~~~~~~dvVv~~~-d~~~~r~~ln~~~~~~---~ip~i~~  156 (346)
T 1y8q_A          110 VDTEDIEKKPESFFTQFDAVCLTC-CSRDVIVKVDQICHKN---SIKFFTG  156 (346)
T ss_dssp             EECSCGGGCCHHHHTTCSEEEEES-CCHHHHHHHHHHHHHT---TCEEEEE
T ss_pred             EEecccCcchHHHhcCCCEEEEcC-CCHHHHHHHHHHHHHc---CCCEEEE
Confidence            00     12467889999998876 4577888887655443   3444544

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.16  E-value=0.13  Score=49.34  Aligned_cols=94  Identities=18%  Similarity=0.193  Sum_probs=57.3

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcCCCCcc-ccccCCHHHHhh-----
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVT-WKRASSMDEVLR-----  235 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~sl~ell~-----  235 (398)
                      .|++|.|+|. |.||+.+++.+ +..|++|++.+++.... +.        ++ ..+..... .....++.+.+.     
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a-~~~G~~V~~~~~~~~~~-~~--------~~~~~g~~~~~d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLA-KMMGCYVVGSAGSKEKV-DL--------LKTKFGFDDAFNYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH--------HHHTSCCSEEEETTSCSCSHHHHHHHCTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHHcCCceEEecCCHHHHHHHHHHHhCC
Confidence            5789999997 99999999986 78999999999876432 11        11 12221100 001113333322     


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ..|+|+.++..  +    .-...+..++++..++.++-
T Consensus       225 ~~d~vi~~~g~--~----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          225 GIDIYFENVGG--K----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             CEEEEEESSCH--H----HHHHHHTTEEEEEEEEECCC
T ss_pred             CCcEEEECCCH--H----HHHHHHHHHhcCCEEEEEcc
Confidence            46777777652  1    12456677777777777754

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.16  E-value=0.33  Score=46.79  Aligned_cols=92  Identities=13%  Similarity=0.083  Sum_probs=57.3

Q ss_pred             CeEEEE-ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hcCC
Q 015895          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------READ  238 (398)
Q Consensus       166 ktvGII-GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell------~~aD  238 (398)
                      +++.|. |.|.||...++.+ +.+|++|++.+++.... + +.       ++.|..........++.+.+      ...|
T Consensus       166 ~~vli~gg~g~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~-~~-------~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQI-A-LL-------KDIGAAHVLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESCGGGH-H-HH-------HHHTCSEEEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HH-------HHcCCCEEEECCcHHHHHHHHHHhcCCCCc
Confidence            567665 8999999999985 78999999999876542 1 11       11222111111112332222      2589


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|+-++.. +   . + ...+..++++..++.++.
T Consensus       236 ~vid~~g~-~---~-~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          236 IFLDAVTG-P---L-A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEEESSCH-H---H-H-HHHHHHSCTTCEEEECCC
T ss_pred             EEEECCCC-h---h-H-HHHHhhhcCCCEEEEEec
Confidence            99887752 1   1 1 567788899888888764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.11  E-value=0.17  Score=52.22  Aligned_cols=90  Identities=16%  Similarity=0.167  Sum_probs=59.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc-cccCCHHHH-hhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEV-LREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sl~el-l~~aDiV~l~  243 (398)
                      +++.|+|+|++|+.+|+.| ...|.+|++.|..+....+            ....-.+. .....|+++ +++||.++++
T Consensus       349 ~~viIiG~G~~G~~la~~L-~~~g~~v~vid~d~~~~~~------------~~~~i~gD~t~~~~L~~agi~~ad~vi~~  415 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFL-DRKPVPFILIDRQESPVCN------------DHVVVYGDATVGQTLRQAGIDRASGIIVT  415 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCEEEEESSCCSSCC------------SSCEEESCSSSSTHHHHHTTTSCSEEEEC
T ss_pred             CCEEEECCCHHHHHHHHHH-HHCCCCEEEEECChHHHhh------------cCCEEEeCCCCHHHHHhcCccccCEEEEE
Confidence            7899999999999999998 6899999999987753210            01000011 011224444 7899999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                      ++.+  ..+++-....+.+.+...+|-
T Consensus       416 ~~~d--~~ni~~~~~ak~l~~~~~iia  440 (565)
T 4gx0_A          416 TNDD--STNIFLTLACRHLHSHIRIVA  440 (565)
T ss_dssp             CSCH--HHHHHHHHHHHHHCSSSEEEE
T ss_pred             CCCc--hHHHHHHHHHHHHCCCCEEEE
Confidence            9863  344554556666666644443

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=93.07  E-value=0.45  Score=44.20  Aligned_cols=88  Identities=16%  Similarity=0.174  Sum_probs=50.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aDiV~l  242 (398)
                      ++|+|+|+ |+||+.+++.+...-++++.+ +|+.                             .++++++. .+|+|+-
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~-----------------------------~dl~~~~~~~~DvvID   51 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG-----------------------------DPLSLLTDGNTEVVID   51 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT-----------------------------CCTHHHHHTTCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC-----------------------------CCHHHHhccCCcEEEE
Confidence            37999996 999999999863233888764 4431                             24556654 7898884


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHH-HHHHHh
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA-LVEHLK  287 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~a-L~~aL~  287 (398)
                      +.+- +.+...    ....++.|.-+|-.+.|---++.+ |.++.+
T Consensus        52 fT~p-~a~~~~----~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~   92 (245)
T 1p9l_A           52 FTHP-DVVMGN----LEFLIDNGIHAVVGTTGFTAERFQQVESWLV   92 (245)
T ss_dssp             CSCT-TTHHHH----HHHHHHTTCEEEECCCCCCHHHHHHHHHHHH
T ss_pred             ccCh-HHHHHH----HHHHHHcCCCEEEcCCCCCHHHHHHHHHHHH
Confidence            5432 222222    122244566666666663222223 444444

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.04  E-value=0.21  Score=48.26  Aligned_cols=35  Identities=20%  Similarity=0.126  Sum_probs=31.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~-~V~~~d~~~~~  201 (398)
                      ++|.|.|. |.||+.+++.+ +..|+ +|++.+++...
T Consensus       162 ~~vlI~GasggiG~~~~~~a-~~~Ga~~Vi~~~~~~~~  198 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIG-HFLGCSRVVGICGTHEK  198 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             cEEEEECCCcHHHHHHHHHH-HHCCCCeEEEEeCCHHH
Confidence            89999998 99999999986 78999 99999987643

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=92.98  E-value=0.45  Score=48.47  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~---~V~~~d~~~  199 (398)
                      ++|.|||+|.||+.+|+.+++..++   +|+..|+..
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~   50 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEG   50 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence            3599999999999999998776665   577777643

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=92.97  E-value=0.16  Score=48.47  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+.+|+|.|.|. |-||+.+++.| ...|.+|++.++...
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKL-LKLNQVVIGLDNFST   60 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSS
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence            367889999995 99999999998 578999999998654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=92.95  E-value=0.2  Score=49.25  Aligned_cols=100  Identities=21%  Similarity=0.138  Sum_probs=59.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-H---h--hc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-V---L--RE  236 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e-l---l--~~  236 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++.... + +       +++.|..........++.+ +   .  ..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlA-k~~Ga~~Vi~~~~~~~~~-~-~-------a~~lGa~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPARL-A-H-------AKAQGFEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHH-H-H-------HHHTTCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCeEEEEcCCHHHH-H-H-------HHHcCCcEEccCCcchHHHHHHHHhCCCC
Confidence            578999999999999999975 89999 799998876542 1 1       1222332111111112222 2   2  14


Q ss_pred             CCEEEEccCCChhh-----h-----hhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTT-----Y-----HLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T-----~-----~li~~~~~~~mk~gailIN~aR  273 (398)
                      .|+|+-++......     .     .-.-.+.+..++++..++.++-
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            78888887642100     0     0012456777888888887763

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=92.94  E-value=0.23  Score=46.33  Aligned_cols=77  Identities=19%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh----HHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcC
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT----RLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~a  237 (398)
                      .++|.|.|. |.||+.+++.| ...|.+|++.+|....    ........    +...+....  ......++.++++.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~~~----l~~~~v~~v~~D~~d~~~l~~~~~~~   78 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVRESTASSNSEKAQLLES----FKASGANIVHGSIDDHASLVEAVKNV   78 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCCTTTTHHHHHHHHH----HHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HhCCCCEEEEECCcccccCHHHHHHHHH----HHhCCCEEEEeccCCHHHHHHHHcCC
Confidence            468999996 99999999998 5778999999887421    11110000    111111110  011123467778899


Q ss_pred             CEEEEccCC
Q 015895          238 DVISLHPVL  246 (398)
Q Consensus       238 DiV~l~~Pl  246 (398)
                      |+|+.+.+.
T Consensus        79 d~vi~~a~~   87 (308)
T 1qyc_A           79 DVVISTVGS   87 (308)
T ss_dssp             SEEEECCCG
T ss_pred             CEEEECCcc
Confidence            999887764

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=92.92  E-value=0.12  Score=48.02  Aligned_cols=72  Identities=13%  Similarity=0.053  Sum_probs=46.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|.|.|. |.||+.+++.| ... |.+|++.+|++.....         +...+....  ......++.++++.+|+|+
T Consensus         1 M~ilVtGatG~iG~~l~~~L-~~~~g~~V~~~~R~~~~~~~---------~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi   70 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQA-IANHIDHFHIGVRNVEKVPD---------DWRGKVSVRQLDYFNQESMVEAFKGMDTVV   70 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHH-HHTTCTTEEEEESSGGGSCG---------GGBTTBEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CEEEEEcCCchHHHHHHHHH-hhCCCCcEEEEECCHHHHHH---------hhhCCCEEEEcCCCCHHHHHHHHhCCCEEE
Confidence            46899994 99999999998 455 8999999987754211         001111000  0111234677899999999


Q ss_pred             EccCCC
Q 015895          242 LHPVLD  247 (398)
Q Consensus       242 l~~Plt  247 (398)
                      .+.+..
T Consensus        71 ~~a~~~   76 (289)
T 3e48_A           71 FIPSII   76 (289)
T ss_dssp             ECCCCC
T ss_pred             EeCCCC
Confidence            887653

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=92.89  E-value=0.077  Score=49.43  Aligned_cols=47  Identities=21%  Similarity=0.178  Sum_probs=29.3

Q ss_pred             CCCCccc-ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          153 WLPNLFV-GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       153 w~~~~~~-g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      |.++.++ ...+.||++.|.|. |.||+++|+.|+ ..|++|++.+.+..
T Consensus        14 ~~~~~~~~~m~~~~k~~lVTGas~GIG~aia~~la-~~G~~Vv~~~~~~~   62 (267)
T 3u5t_A           14 GTENLYFQSMMETNKVAIVTGASRGIGAAIAARLA-SDGFTVVINYAGKA   62 (267)
T ss_dssp             -------------CCEEEEESCSSHHHHHHHHHHH-HHTCEEEEEESSCS
T ss_pred             ccccccccccccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEcCCCH
Confidence            5444333 23578999999987 789999999984 77999988754433

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=92.89  E-value=0.39  Score=44.69  Aligned_cols=76  Identities=11%  Similarity=0.079  Sum_probs=47.1

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh-----h-hHHHHHHhhhhhhhhhcCCCCcc--ccccCCHHHHhh
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ-----A-TRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLR  235 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sl~ell~  235 (398)
                      +++|.|.|. |.||+.+++.| ...|.+|++.+|..     + ...+.. +.    +...+.....  .....++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~----l~~~~v~~v~~D~~d~~~l~~~~~   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWAS-IKAGNPTYALVRKTITAANPETKEELI-DN----YQSLGVILLEGDINDHETLVKAIK   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHHTCCEEEEECCSCCSSCHHHHHHHH-HH----HHHTTCEEEECCTTCHHHHHHHHT
T ss_pred             CcEEEEECCCchHHHHHHHHH-HhCCCcEEEEECCCcccCChHHHHHHH-HH----HHhCCCEEEEeCCCCHHHHHHHHh
Confidence            578999996 99999999998 46688999998875     1 111110 00    1111111100  111234677788


Q ss_pred             cCCEEEEccCC
Q 015895          236 EADVISLHPVL  246 (398)
Q Consensus       236 ~aDiV~l~~Pl  246 (398)
                      .+|+|+.+.+.
T Consensus        76 ~~d~vi~~a~~   86 (307)
T 2gas_A           76 QVDIVICAAGR   86 (307)
T ss_dssp             TCSEEEECSSS
T ss_pred             CCCEEEECCcc
Confidence            99999888764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=92.87  E-value=0.23  Score=46.49  Aligned_cols=39  Identities=23%  Similarity=0.210  Sum_probs=33.7

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ..+.||++.|.|. |.||+++|++| ...|++|+..+++..
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRV-AADGANVALVAKSAE   44 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHH-HTTTCEEEEEESCCS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECChh
Confidence            3588999999997 78999999998 478999999998764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=92.85  E-value=0.12  Score=50.23  Aligned_cols=102  Identities=14%  Similarity=0.116  Sum_probs=59.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC---------CcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF---------KMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f---------G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~  235 (398)
                      .+|||||+|.||+.+++.+. ..         +++| .++|++.... +             +. +. .....++++++ 
T Consensus         4 irvgIiG~G~VG~~~~~~l~-~~~~~l~~~g~~~~lvaV~d~~~~~~-~-------------~~-~~-~~~~~d~~~ll-   65 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVL-ERAEELSAFGVVPRFLGVLVRDPRKP-R-------------AI-PQ-ELLRAEPFDLL-   65 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HTGGGGGGGTEEEEEEEEECSCTTSC-C-------------SS-CG-GGEESSCCCCT-
T ss_pred             eEEEEEcCCHHHHHHHHHHH-hChhhHhhcCCCEEEEEEEECCHHHh-h-------------cc-Cc-ccccCCHHHHh-
Confidence            37999999999999999873 33         4565 4556654321 0             10 11 11235677888 


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhcC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN  289 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~~aL~~g  289 (398)
                      +.|+|+.|+|........    ..+.++.|.-+|...-..+ -.-++|.++.++.
T Consensus        66 ~iDvVve~t~~~~~a~~~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           66 EADLVVEAMGGVEAPLRL----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             TCSEEEECCCCSHHHHHH----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             CCCEEEECCCCcHHHHHH----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            999999999854221211    2234455555555432222 2445577766665

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=92.83  E-value=0.076  Score=47.85  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=49.6

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~fG~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      +.+|++.|.| .|.||+.+++.| ...|.  +|++.+++.....+...       ..............+++++++.+|+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L-~~~G~~~~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~d~   87 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEI-LEQGLFSKVTLIGRRKLTFDEEAY-------KNVNQEVVDFEKLDDYASAFQGHDV   87 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHH-HHHTCCSEEEEEESSCCCCCSGGG-------GGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHH-HcCCCCCEEEEEEcCCCCcccccc-------CCceEEecCcCCHHHHHHHhcCCCE
Confidence            5678999999 599999999998 46788  99999987643110000       0000000011122356677889999


Q ss_pred             EEEccCCC
Q 015895          240 ISLHPVLD  247 (398)
Q Consensus       240 V~l~~Plt  247 (398)
                      |+.+....
T Consensus        88 vi~~ag~~   95 (242)
T 2bka_A           88 GFCCLGTT   95 (242)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99888654

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=92.82  E-value=0.061  Score=49.43  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      -.||++.|.|. |.||+++|++| ...|++|++.++....
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l-~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFF-KSKSWNTISIDFRENP   58 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCT
T ss_pred             ccCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCccc
Confidence            34789999997 78999999998 5789999999987653

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.80  E-value=0.18  Score=48.86  Aligned_cols=37  Identities=14%  Similarity=0.015  Sum_probs=32.5

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|++|.|+| .|.||..+++.+ +..|++|++.+++...
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~Vi~~~~~~~~  199 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKK  199 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            578999999 799999999986 7899999999987643

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=92.78  E-value=0.41  Score=46.65  Aligned_cols=98  Identities=19%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hcCC
Q 015895          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READ  238 (398)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell---~~aD  238 (398)
                      -.|++|.|+| .|.||...++.+ +.+|++|++.+. ... .+ +.       ++.|..........++.+.+   ...|
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla-~~~Ga~Vi~~~~-~~~-~~-~~-------~~lGa~~v~~~~~~~~~~~~~~~~g~D  250 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVM-KAWDAHVTAVCS-QDA-SE-LV-------RKLGADDVIDYKSGSVEEQLKSLKPFD  250 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEC-GGG-HH-HH-------HHTTCSEEEETTSSCHHHHHHTSCCBS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEeC-hHH-HH-HH-------HHcCCCEEEECCchHHHHHHhhcCCCC
Confidence            3588999999 799999999985 789999998874 322 21 11       22232211111112333322   3589


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      +|+-++.....+    -...+..++++..+|.++...
T Consensus       251 ~vid~~g~~~~~----~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          251 FILDNVGGSTET----WAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             EEEESSCTTHHH----HGGGGBCSSSCCEEEESCCSH
T ss_pred             EEEECCCChhhh----hHHHHHhhcCCcEEEEeCCCc
Confidence            999888743111    134567789999999998643

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.76  E-value=0.13  Score=47.96  Aligned_cols=40  Identities=23%  Similarity=0.083  Sum_probs=34.0

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ..+.||++.|.|. |.||+++|++| ...|++|++.+++...
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~l-a~~G~~V~~~~~~~~~   64 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALEL-AAAGAKVAVNYASSAG   64 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCChH
Confidence            5689999999997 78999999998 4789999998875443

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.75  E-value=0.21  Score=49.17  Aligned_cols=98  Identities=16%  Similarity=0.119  Sum_probs=60.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HH-H---hh--
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DE-V---LR--  235 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl-~e-l---l~--  235 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.... + +       +++.|...... ...++ .+ +   ..  
T Consensus       185 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~-~-~-------a~~lGa~~i~~-~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGA-RLLGAACVIVGDQNPERL-K-L-------LSDAGFETIDL-RNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH-H-H-------HHTTTCEEEET-TSSSCHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHH-H-H-------HHHcCCcEEcC-CCcchHHHHHHHHhCCC
Confidence            578999999999999999975 78999 999999876542 1 1       12223211101 11121 22 2   21  


Q ss_pred             cCCEEEEccCCChh----------hhhhccHHHHhcCCCCcEEEEcCC
Q 015895          236 EADVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       236 ~aDiV~l~~Plt~~----------T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ..|+|+-++.....          .... -.+.+..++++..++.++-
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~-~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETPNGA-LNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCTTHH-HHHHHHHEEEEEEEECCSC
T ss_pred             CCCEEEECCCCccccccccccccccHHH-HHHHHHHHhcCCEEEEecc
Confidence            47899888864210          0001 2456777888888887764

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=92.71  E-value=0.11  Score=50.66  Aligned_cols=91  Identities=10%  Similarity=0.128  Sum_probs=48.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhc--CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~--fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      .+|+|+| +|.||+.+.+.|...  -..++.+.....+.-. .        +.-.+ ....+... +. +.+..+|+|+.
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~-~--------~~~~~-~~i~~~~~-~~-~~~~~vDvVf~   71 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGK-T--------YRFNG-KTVRVQNV-EE-FDWSQVHIALF   71 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTC-E--------EEETT-EEEEEEEG-GG-CCGGGCSEEEE
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCC-c--------eeecC-ceeEEecC-Ch-HHhcCCCEEEE
Confidence            5799999 999999999987432  2466666643221100 0        00000 01111111 11 23478999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|.. .++... ..   ..+.|+.+|+.+-
T Consensus        72 a~g~~-~s~~~a-~~---~~~~G~~vId~s~   97 (336)
T 2r00_A           72 SAGGE-LSAKWA-PI---AAEAGVVVIDNTS   97 (336)
T ss_dssp             CSCHH-HHHHHH-HH---HHHTTCEEEECSS
T ss_pred             CCCch-HHHHHH-HH---HHHcCCEEEEcCC
Confidence            99843 222221 11   2345777877653

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=92.71  E-value=0.19  Score=48.03  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=31.9

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .|+++.|.|. |.||+.+++.+ +..|++|++.+++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~Vi~~~~~~~  181 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWA-RHLGATVIGTVSTEE  181 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHH-HHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            5789999995 99999999986 789999999998764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.62  E-value=0.079  Score=50.43  Aligned_cols=39  Identities=13%  Similarity=0.120  Sum_probs=34.3

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .++.||+|.|.|. |-||+.+++.| ...|++|++.++...
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L-~~~g~~V~~~~r~~~   55 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHW-LPQGHEILVIDNFAT   55 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHH-GGGTCEEEEEECCSS
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCc
Confidence            5789999999997 99999999998 577999999998643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.62  E-value=0.24  Score=47.96  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|++|.|.|. |.||+.+++.+ +..|++|++.+++...
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a-~~~Ga~Vi~~~~~~~~  207 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEG  207 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CcCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChhH
Confidence            5789999998 99999999986 7899999999987643

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.59  E-value=0.29  Score=45.16  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +|+||++.|-|.+   -||+++|++|+ ..|++|+..+++...
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la-~~Ga~Vvi~~r~~~~   44 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLD-QLGAKLVFTYRKERS   44 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHH-HTTCEEEEEESSGGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            6999999999974   59999999984 899999999987643

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=92.59  E-value=0.28  Score=47.21  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=47.4

Q ss_pred             ccCCCeEEEEe-cChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--ccc-ccCCHHHHhhc
Q 015895          162 LLKGQTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWK-RASSMDEVLRE  236 (398)
Q Consensus       162 ~l~gktvGIIG-lG~IG~~vA~~la~~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~sl~ell~~  236 (398)
                      .+.+|+|.|.| .|-||+.+++.|+ .. |.+|++.++........        ....+....  ... ...+++++++.
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~-~~~g~~V~~~~r~~~~~~~~--------~~~~~v~~~~~Dl~~d~~~~~~~~~~   91 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRIL-ETTDWEVFGMDMQTDRLGDL--------VKHERMHFFEGDITINKEWVEYHVKK   91 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHH-HHSSCEEEEEESCCTTTGGG--------GGSTTEEEEECCTTTCHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHH-hCCCCEEEEEeCChhhhhhh--------ccCCCeEEEeCccCCCHHHHHHHhcc
Confidence            47789999999 5999999999984 55 89999999876432110        000010000  000 11236677889


Q ss_pred             CCEEEEccCC
Q 015895          237 ADVISLHPVL  246 (398)
Q Consensus       237 aDiV~l~~Pl  246 (398)
                      +|+|+-+...
T Consensus        92 ~d~Vih~A~~  101 (372)
T 3slg_A           92 CDVILPLVAI  101 (372)
T ss_dssp             CSEEEECBCC
T ss_pred             CCEEEEcCcc
Confidence            9999876543

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=92.57  E-value=0.12  Score=51.85  Aligned_cols=122  Identities=17%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcC-------C--hhhHHHHHHhhhhh--hhhhcCCCCcccccc
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDL-------Y--QATRLEKFVTAYGQ--FLKANGEQPVTWKRA  227 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~-------~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  227 (398)
                      |.++.|+++.|.|+|++|+.+|+.| ..+|++|+ +.|.       .  ....+..+.+..+.  ...-.+...  ....
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L-~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~--~~~~  281 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDN--AEFV  281 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSC--CCCC
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccC--ceEe
Confidence            3579999999999999999999997 68999998 4444       1  11122221111100  000000000  0011


Q ss_pred             CCHHHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          228 SSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       228 ~sl~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      .+.++++ ..||+++-|.-     .+.|+.+....++ =.+++-.+-+.+- .++ .+.|.+..+.
T Consensus       282 ~~~~~~~~~~~Dil~P~A~-----~~~I~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          282 KNPDAIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPTT-PEA-ERILYERGVV  339 (421)
T ss_dssp             SSTTGGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCBC-HHH-HHHHHTTTCE
T ss_pred             CCchhhhcCCccEEEecCc-----CCccchhhHHHcC-ceEEEecCCCcCC-HHH-HHHHHHCCCE
Confidence            0223443 47899887763     4456666666664 3466777777653 333 3455555443

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=92.51  E-value=0.34  Score=47.70  Aligned_cols=90  Identities=21%  Similarity=0.309  Sum_probs=49.4

Q ss_pred             CeEEEEe-cChhHHHHHH-HHHhcCC---cEEEEEcCChh-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          166 QTVGVIG-AGRIGSAYAR-MMVEGFK---MNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~-~la~~fG---~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ++|||+| +|.+|+.+.+ .| ...+   ..++.+..+.. .....        +  .+ ....+....+.++ ++.+|+
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll-~~~~~~~v~i~~~~~~s~G~~v~~--------~--~g-~~i~~~~~~~~~~-~~~~Dv   68 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMV-EERDFDAIRPVFFSTSQLGQAAPS--------F--GG-TTGTLQDAFDLEA-LKALDI   68 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHH-HTTGGGGSEEEEEESSSTTSBCCG--------G--GT-CCCBCEETTCHHH-HHTCSE
T ss_pred             cEEEEECCCCHHHHHHHHHHH-hcCCCCeEEEEEEEeCCCCCCccc--------c--CC-CceEEEecCChHH-hcCCCE
Confidence            4799999 9999999999 54 4333   35554433211 10000        0  01 1122222223455 579999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCc--EEEEcCC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEA--ILVNCSR  273 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~ga--ilIN~aR  273 (398)
                      |+.|+|.. .++... ...   .+.|+  ++|+.+.
T Consensus        69 Vf~a~g~~-~s~~~a-~~~---~~~G~k~vVID~ss   99 (367)
T 1t4b_A           69 IVTCQGGD-YTNEIY-PKL---RESGWQGYWIDAAS   99 (367)
T ss_dssp             EEECSCHH-HHHHHH-HHH---HHTTCCCEEEECSS
T ss_pred             EEECCCch-hHHHHH-HHH---HHCCCCEEEEcCCh
Confidence            99999942 222222 222   24565  8999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	8e-39
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	9e-28
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	6e-27
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	4e-26
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	3e-25
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	3e-15
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	6e-15
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	7e-15
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	7e-15
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	7e-14
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	1e-13
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	9e-12
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	1e-10
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	3e-09
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	5e-08
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-07
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	3e-06
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	6e-05
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	3e-04

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  135 bits (341), Expect = 8e-39
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           +T  TAE+A  L L +ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238
           A A+   +GF M++ Y+D ++A               ++ E         S+D +L  + 
Sbjct: 61  ALAKRA-QGFDMDIDYFDTHRA--------------SSSDEASYQATFHDSLDSLLSVSQ 105

Query: 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
             SL+      T +  NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DV
Sbjct: 106 FFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 165

Query: 299 FEDEPYMKPGLSEMKNAIVVPHIASA 324
           F  EP +  G  ++ N  + PHI SA
Sbjct: 166 FAGEPNINEGYYDLPNTFLFPHIGSA 191

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  106 bits (264), Expect = 9e-28
 Identities = 67/202 (33%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
             + AE A +L LAA+R+I  AD  +R      W  + F G  + G+TVGV+G GRIG  
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREH---TWKRSSFSGTEIFGKTVGVVGLGRIGQL 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A+ +   F   ++ YD Y +      +                     S+D++L  AD 
Sbjct: 59  VAQRIAA-FGAYVVAYDPYVSPARAAQLGIE----------------LLSLDDLLARADF 101

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           IS+H      T  LI+KE LA  K   I+VN +RG ++DE AL + +    +   GLDVF
Sbjct: 102 ISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 161

Query: 300 EDEPYMKPGLSEMKNAIVVPHI 321
             EP     L E+   +V PH+
Sbjct: 162 ATEPCTDSPLFELAQVVVTPHL 183

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  104 bits (259), Expect = 6e-27
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 22/208 (10%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLY----DGWLPNLFVGNLLKGQTVGVIGAGRI 176
           E TA+      L   RR     + +R G      +           ++G+T+G+IG GR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236
           G A A          L Y                              +R S++ ++L  
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERAL----------------GLQRVSTLQDLLFH 104

Query: 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           +D ++LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    L
Sbjct: 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

Query: 297 DVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           DV E EP+      L +  N I  PH A
Sbjct: 165 DVHESEPFSFSQGPLKDAPNLICTPHAA 192

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  101 bits (252), Expect = 4e-26
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 17/202 (8%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           + AE    + L+  R  + + E+ R G ++     +     L+   VG + AGRIG A  
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           R +   F ++L Y D ++                 + E+ +     ++ +++    DV++
Sbjct: 61  RRL-APFDVHLHYTDRHRLPE--------------SVEKELNLTWHATREDMYPVCDVVT 105

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           L+  L   T H+IN E L   K+ A +VN +RG + D  A+   L+   +     DV+  
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165

Query: 302 EPYMKPG-LSEMKNAIVVPHIA 322
           +P  K      M    + PHI+
Sbjct: 166 QPAPKDHPWRTMPYNGMTPHIS 187

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 99.3 bits (246), Expect = 3e-25
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 27/208 (12%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
           T + AEL     L   R + EA+     G+ +      F                   + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF------------------EAR 43

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
             ++ + G+        +   +          +     G           + ++L  +DV
Sbjct: 44  GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQH----LSDLLNMSDV 99

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +SLH   + +T +++  + ++ MK  ++L+N SRG V+D  AL + L    +    +DVF
Sbjct: 100 VSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 159

Query: 300 EDEPYMKPG-----LSEMKNAIVVPHIA 322
             EP          L+E  N ++ PHI 
Sbjct: 160 PTEPATNSDPFTSPLAEFDNVLLTPHIG 187

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 71.8 bits (174), Expect = 3e-15
 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 35/216 (16%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
              AE AA  +    R+    DE +             +G  ++ Q VGV+G G IG  +
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVGTGHIGQVF 58

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
            ++M       + Y                                  S+D++ ++ADVI
Sbjct: 59  MQIMEGFGAKVITYDIFRNPE------------------LEKKGYYVDSLDDLYKQADVI 100

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E
Sbjct: 101 SLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160

Query: 301 DEPYMKPG--------------LSEMKNAIVVPHIA 322
            E  +                 L    N +V P  A
Sbjct: 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTA 196

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 68.9 bits (168), Expect = 6e-15
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 18  VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET 77
               +      +     +    +E  T+       E+ +       DG+    T  +   
Sbjct: 5   AYGARVDEIQYFKQWAKDTGNTLEYHTEFLD----ENTVEWAKG-FDGINSLQTTPYAAG 59

Query: 78  LFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
           +F  +   G K  +   VG +N+D+ A  +YGI + N P         +           
Sbjct: 60  VFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDF 119

Query: 138 IVEADEFMRAG 148
           + + +      
Sbjct: 120 LTKGETSTEVT 130

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 70.6 bits (171), Expect = 7e-15
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 35/217 (16%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
               AE A + +L   R + +    ++AG Y+     +       GQ    +        
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKEL---GQQTVGVMGTGHIGQ 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A  + +GF   +I YD Y                              S++++ +++DV
Sbjct: 59  VAIKLFKGFGAKVIAYDPYPMKGDHP------------------DFDYVSLEDLFKQSDV 100

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           I LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +
Sbjct: 101 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 160

Query: 300 EDEPYMKPG--------------LSEMKNAIVVPHIA 322
           E E                    L  M N ++ PHIA
Sbjct: 161 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 68.9 bits (168), Expect = 7e-15
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLP-EAAMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P   T+   ++A   +   
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLI 115

Query: 135 ARRIVEAD 142
                 AD
Sbjct: 116 DALFGGAD 123

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 67.1 bits (162), Expect = 7e-14
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           +  AE A +L LA  +RI++  E M+ G Y   +        L       +         
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-----IPLIQGEKVAVLGLGEIGTR 56

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
              ++      +  +                        +   W+  +S++E LREA   
Sbjct: 57  VGKILAALGAQVRGFSRTP--------------------KEGPWRFTNSLEEALREARAA 96

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
                L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F    DV+ 
Sbjct: 97  VCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW 156

Query: 301 DEPYMKPG--LSEMKNAIVVPHIA 322
                        + N +  P +A
Sbjct: 157 GRNDFAKDAEFFSLPNVVATPWVA 180

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 18  ALGDQVEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPK--LKIVAR 70

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P   +   A+  A   +A + R+  A EF+   +  G
Sbjct: 71  AGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 130

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 59.9 bits (145), Expect = 9e-12
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
           +    +    VE+      +L+  + +AL     DGV+     D+      AL+  G   
Sbjct: 16  LKEWEDAHKDVEV-EYTDKLLT-PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITK 72

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI 138
            S   VG +N+D+  A + G  + N P     +    A    +  A   
Sbjct: 73  MSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDN 118

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 24  MPGTRWINLLIEQDCRVEICTQKK-------TILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           MP    + LL  +DC VE+   K           S ++I   + ++  G +   T     
Sbjct: 1   MP---LVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTR 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
                      +    +  G++N+D+ +A   GIAV N P     +  + +  +   AAR
Sbjct: 58  EDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVYS-EQASIEMREEAAR 114

Query: 137 RIVEADEFMRAG 148
            I  A       
Sbjct: 115 EIRRAITGRIPD 126

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 21/142 (14%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
             ++ G+   V G G +G   A+ +  GF   +I  ++     L+  +   G        
Sbjct: 19  DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAM--EGY------- 68

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVID 278
                   ++MDE  +E ++             +I       MK +AI+ N       ID
Sbjct: 69  ------EVTTMDEACQEGNIFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEID 118

Query: 279 EVALVEHLKQNPMFRVGLDVFE 300
              L E+  +    +  +D + 
Sbjct: 119 VKWLNENAVEKVNIKPQVDRYR 140

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIV 139
           K      +G ++VD+ +A    + V       + T    A                R I 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIR 174

Query: 140 EADEFMRAGLY 150
           +    ++ G  
Sbjct: 175 DEYLIVQGGAL 185

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV 100
                 K  L  E +   I D    +   L      T     +     A    A+G N V
Sbjct: 27  TNIEFHKGALDDEQLKESIRD-AHFIG--LRSRTHLTEDVINAAEKLVAIGAFAIGTNQV 83

Query: 101 DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 148
           D++AA K GI V N P   T+   E           +  +    + A 
Sbjct: 84  DLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 31/96 (32%)

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K    +  G +++   +     + V    G        +   + + A R          
Sbjct: 51  LKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR---------- 99

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                                +     G      A+
Sbjct: 100 --------------------NLITYATGGRPRNIAK 115

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 16/109 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L+ +   ++G G +    AR+++E                    +T              
Sbjct: 10  LRDRDCLIVGGGDVAERKARLLLE----------------AGARLTVNALTFIPQFTVWA 53

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                + ++    E  + S    +  T    +N+      +   I  N 
Sbjct: 54  NEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           VGV+G G +G+  A  + E GFK  +  ++   + + E+F+ A      A   +      
Sbjct: 4   VGVVGLGVMGANLALNIAEKGFK--VAVFNRTYS-KSEEFMKANASAPFAGNLKAFETME 60

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +    + +    + L      T   +         +K  ILV+       D+    + L
Sbjct: 61  -AFAASLKKPRKALILVQAGAATDSTIEQ--LKKVFEKGDILVDTGNAHFKDQGRRAQQL 117

Query: 287 KQNPMFRVGLDVFEDEPYMKPGLSEM 312
           +   +  +G+ +   E   + G +  
Sbjct: 118 EAAGLRFLGMGISGGEEGARKGPAFF 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.93
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.9
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.86
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.86
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.83
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.81
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.79
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.79
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.67
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.44
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.42
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.37
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.31
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.28
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.2
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.97
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.97
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.89
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.88
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.84
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.64
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.53
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.46
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.4
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.38
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.31
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.3
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.23
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.23
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.06
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.0
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.98
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.97
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.97
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.94
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.94
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.93
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.85
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.77
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.72
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.65
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.65
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.44
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.44
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.42
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.39
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.32
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.29
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.26
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.24
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.23
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.23
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.16
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.16
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.16
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.15
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.14
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.12
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.12
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.04
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.03
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.01
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.0
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.96
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	96.93
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.92
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.9
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.88
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.86
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.85
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.85
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.84
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.83
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.81
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.72
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.69
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.68
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.55
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.55
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.5
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.43
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.41
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.41
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.4
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.39
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.36
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.32
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.31
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.26
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.13
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.11
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.1
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.09
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.06
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.02
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.98
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.97
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.91
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.86
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.85
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.82
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.82
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.79
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.75
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.57
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.53
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.43
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.35
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.14
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.03
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.01
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	94.98
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.87
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.79
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.77
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.75
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	94.74
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	94.6
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.57
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.55
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	94.54
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	94.53
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.48
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.37
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.32
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.11
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.11
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.1
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.06
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.02
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	93.94
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.9
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	93.85
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.7
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.66
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.59
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.4
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.38
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.35
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.25
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.2
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.14
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.12
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.11
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.1
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.06
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.04
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.04
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.04
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.03
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.97
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.89
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.86
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.83
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.79
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.78
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.74
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.72
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.69
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.57
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.47
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.41
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.29
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.26
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.25
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	92.17
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.12
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.06
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.01
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.99
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	91.89
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	91.74
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	91.71
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	91.69
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.6
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.56
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.53
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.43
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.37
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.32
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.29
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.18
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.09
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.08
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.01
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.98
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	90.9
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.9
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.85
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.82
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.73
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	90.65
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.65
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.63
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.62
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.44
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.43
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	90.39
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	90.33
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.3
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	90.27
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.25
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.09
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	89.9
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	89.84
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	89.83
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	89.71
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.68
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.63
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	89.63
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	89.55
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.47
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.38
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.27
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.1
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.0
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	88.94
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.92
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	88.84
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	88.79
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.73
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.59
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.35
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.28
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.27
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.27
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.22
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	87.98
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	87.75
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	87.74
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	87.58
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.3
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	87.08
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	87.01
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.79
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	86.2
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.45
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	85.07
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	85.07
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	84.99
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.94
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	84.9
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	84.89
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	84.87
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.86
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	84.74
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.27
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	83.98
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	83.95
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	83.83
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.54
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.51
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.83
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	82.79
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.01
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	81.97
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.62
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.54
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.05
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	80.34
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	80.02

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=3.3e-53  Score=385.94  Aligned_cols=190  Identities=33%  Similarity=0.537  Sum_probs=173.6

Q ss_pred             CchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       120 ~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +.+||||++++||+++|+++++++.+++|.|..|.+..+.|.+++|+|+||||+|+||+.+|+++ ++|||+|++||++.
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   80 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR   80 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHH-Hhhccccccccccc
Confidence            46899999999999999999999999999999999888889999999999999999999999997 89999999999976


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH
Q 015895          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde  279 (398)
                      ........              .......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++|||
T Consensus        81 ~~~~~~~~--------------~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  146 (191)
T d1gdha1          81 ASSSDEAS--------------YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN  146 (191)
T ss_dssp             CCHHHHHH--------------HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             cccchhhc--------------ccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhh
Confidence            54221100              0122346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCC
Q 015895          280 VALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA  324 (398)
Q Consensus       280 ~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~  324 (398)
                      +||+++|++|++.||+||||++||++++|||++|||++|||+|++
T Consensus       147 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         147 ELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             HHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             HHHHHHHHcCCceEEEEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999999999999999999888899999999999999974

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=8e-53  Score=381.38  Aligned_cols=184  Identities=37%  Similarity=0.539  Sum_probs=168.6

Q ss_pred             CCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       119 ~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      |+.+||||++++||++.|+++++++.+++|.   |.+..+.|.++.||++||+|+|+||+.+|+++ ++|||+|++|||+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~---W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~-~~fg~~v~~~d~~   76 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHT---WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYDPY   76 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTC---CCGGGCCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECTT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCC---CCccccccccccceeeeeccccchhHHHHHHh-hhccceEEeecCC
Confidence            6789999999999999999999999999998   55555678999999999999999999999997 8999999999998


Q ss_pred             hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (398)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd  278 (398)
                      ..+.....          .+     . ...+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||
T Consensus        77 ~~~~~~~~----------~~-----~-~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVd  140 (184)
T d1ygya1          77 VSPARAAQ----------LG-----I-ELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD  140 (184)
T ss_dssp             SCHHHHHH----------HT-----C-EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             CChhHHhh----------cC-----c-eeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhh
Confidence            76532210          01     1 23689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCC
Q 015895          279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (398)
Q Consensus       279 e~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia  322 (398)
                      |+||+++|++|++.||+||||++||++++|||++|||++|||+|
T Consensus       141 e~aL~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         141 EAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             HHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             hHHHHHHHhcCcEeEEEEeCCCCCCCCCchHhcCCCEEECCCCC
Confidence            99999999999999999999999999888999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=2.9e-50  Score=366.92  Aligned_cols=187  Identities=32%  Similarity=0.483  Sum_probs=166.5

Q ss_pred             chHHHHHHHHHHHHhhchHHHHHHHHcCccCCCC----CCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEc
Q 015895          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWL----PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (398)
Q Consensus       121 ~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~----~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d  196 (398)
                      ++||||+++++|+++|+++.+++.+++|.|..+.    +....|.+|+||||||||+|+||+.+|+++ ++|||+|++||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l-~~fg~~v~~~d   79 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYD   79 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEC
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeee-eccccceeecc
Confidence            4799999999999999999999999999975332    123467899999999999999999999997 89999999999


Q ss_pred             CChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      |+........               .++....+++|+++.||+|++|+|+|++|+++||++.|++||+|++|||+|||++
T Consensus        80 ~~~~~~~~~~---------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1          80 PYLSDGVERA---------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             TTSCTTHHHH---------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             Ccccccchhh---------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceE
Confidence            9875432210               1133456899999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHhcCCccEEEeccCCCCCCC--CCCCCCCCceEEcCCCCC
Q 015895          277 IDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       277 vde~aL~~aL~~g~i~gAalDV~~~EP~~--~~~L~~~~nvilTPHia~  323 (398)
                      |||+||+++|++|+++||++|||++||++  ++||+++|||++|||+|+
T Consensus       145 vde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         145 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999999999999999999975  469999999999999985

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=1.2e-49  Score=361.67  Aligned_cols=186  Identities=26%  Similarity=0.332  Sum_probs=164.7

Q ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       122 ~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +||||+++++|+++|++.+++..+++|.|..+ +....+.++.|+++||||+|+||+.+|+++ ++|||+|.+||++..+
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~-~~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~~~~   79 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIA-DCVSHAYDLEAMHVGTVAAGRIGLAVLRRL-APFDVHLHYTDRHRLP   79 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHH-HHHTTCCCCTTCEEEEECCSHHHHHHHHHH-GGGTCEEEEECSSCCC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCc-ccCCcceeccccceeeccccccchhhhhhh-hccCceEEEEeecccc
Confidence            79999999999999999999999999996432 222346799999999999999999999997 8999999999987644


Q ss_pred             HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      .....         .     .+.....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++|
T Consensus        80 ~~~~~---------~-----~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~a  145 (188)
T d2naca1          80 ESVEK---------E-----LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDA  145 (188)
T ss_dssp             HHHHH---------H-----HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             ccccc---------c-----ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHH
Confidence            22110         0     112345789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCccEEEeccCCCCCCCC-CCCCCCCceEEcCCCCC
Q 015895          282 LVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       282 L~~aL~~g~i~gAalDV~~~EP~~~-~~L~~~~nvilTPHia~  323 (398)
                      |+++|++|+++||+||||++||.+. +||+.+||+++|||+||
T Consensus       146 L~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         146 VARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             HHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             HHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999999999999999999999864 79999999999999997

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=4e-50  Score=367.89  Aligned_cols=184  Identities=32%  Similarity=0.473  Sum_probs=164.1

Q ss_pred             CchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       120 ~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      .++||||+++++|++.|+++++++.+++|.|..  ...+.|++|.||||||||+|+||+.+|+++ ++|||+|++|||+.
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~--~~~~~~~~l~~ktvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   78 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEK--AGTFIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYP   78 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHH--HTCCCCCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCc--ccCcccccccceeeeeeecccccccccccc-cccceeeeccCCcc
Confidence            368999999999999999999999999999642  223578999999999999999999999997 89999999999986


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH
Q 015895          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde  279 (398)
                      .....                 . .....+++++++.||+|++|+|+|++|+++||++.|++||+|++|||+|||++|||
T Consensus        79 ~~~~~-----------------~-~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde  140 (199)
T d1dxya1          79 MKGDH-----------------P-DFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT  140 (199)
T ss_dssp             CSSCC-----------------T-TCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred             chhhh-----------------c-chhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhh
Confidence            53110                 0 11246899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCccEEEeccCCCCCCC----------C----CCCCCCCceEEcCCCCCC
Q 015895          280 VALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVPHIASA  324 (398)
Q Consensus       280 ~aL~~aL~~g~i~gAalDV~~~EP~~----------~----~~L~~~~nvilTPHia~~  324 (398)
                      +||+++|++|+++||+||||++||++          +    ++|+.+|||++|||+||+
T Consensus       141 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         141 QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HHHHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            99999999999999999999999952          1    368899999999999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-49  Score=358.21  Aligned_cols=183  Identities=28%  Similarity=0.425  Sum_probs=157.0

Q ss_pred             CCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       119 ~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      |+++||||+++++|++.|++++++..+++|.|   .+....+.++.|++|||||+|+||+.+|+++ ++|||+|++||++
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w---~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~   76 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVG---NKLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIE   76 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCC---C-----CCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCC---cccccccccccceEEEEeecccchhhhhhhc-ccccceEeecccc
Confidence            68899999999999999999999999999985   4444567899999999999999999999997 8999999999987


Q ss_pred             hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (398)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd  278 (398)
                      .....                  .......+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||
T Consensus        77 ~~~~~------------------~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1          77 NKLPL------------------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             CCCCC------------------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred             ccchh------------------hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhh
Confidence            64310                  112234689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCccEEEeccCCCCCCC-----CCCCCCCCceEEcCCCCC
Q 015895          279 EVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       279 e~aL~~aL~~g~i~gAalDV~~~EP~~-----~~~L~~~~nvilTPHia~  323 (398)
                      ++||+++|++|++.||+||||++||..     .+||+++|||++|||+||
T Consensus       139 e~aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         139 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             HHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             hHHHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            999999999999999999999999973     248999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=6.5e-49  Score=358.97  Aligned_cols=182  Identities=35%  Similarity=0.555  Sum_probs=163.9

Q ss_pred             chHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       121 ~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ++||||+++++|+++|+++..++.+++|+|. |.+  ..|++|+||||||||+|+||+.+|+++ ++|||+|++||++..
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~-w~~--~~g~el~gk~vgIiG~G~IG~~va~~l-~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRN   77 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCC-cCC--CcCccccCCeEEEecccccchhHHHhH-hhhcccccccCcccc
Confidence            5899999999999999999999999999875 655  578999999999999999999999997 899999999999876


Q ss_pred             hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHH
Q 015895          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (398)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~  280 (398)
                      ...+.           .      .....++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++
T Consensus        78 ~~~~~-----------~------~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~  140 (197)
T d1j4aa1          78 PELEK-----------K------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD  140 (197)
T ss_dssp             HHHHH-----------T------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred             ccccc-----------c------eeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhH
Confidence            53221           0      112468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCccEEEeccCCCCCCCC--------------CCCCCCCceEEcCCCCC
Q 015895          281 ALVEHLKQNPMFRVGLDVFEDEPYMK--------------PGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       281 aL~~aL~~g~i~gAalDV~~~EP~~~--------------~~L~~~~nvilTPHia~  323 (398)
                      ||+++|++|+++||+||||++||...              +|||.+|||++|||+|+
T Consensus       141 aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         141 AVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             HHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHHHHHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99999999999999999999997421              25889999999999985

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=3.7e-48  Score=349.60  Aligned_cols=179  Identities=27%  Similarity=0.446  Sum_probs=160.2

Q ss_pred             CchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       120 ~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +++||||+++++|+++|+++++++.+++|+|.   +.. ...++.||||||||+|+||+.+|+++ ++|||+|++|||++
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~---~~~-~~~~l~gk~vgIiG~G~IG~~va~~l-~~~g~~v~~~d~~~   75 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYG---RDV-EIPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTP   75 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCC---CCS-CCCCCTTCEEEEESCSTHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCC---CCC-CCCcccCceEEEeccccccccceeee-eccccccccccccc
Confidence            46899999999999999999999999999863   222 22479999999999999999999997 89999999999986


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcH
Q 015895          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde  279 (398)
                      ...                    ......+++|++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||+
T Consensus        76 ~~~--------------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~  135 (181)
T d1qp8a1          76 KEG--------------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR  135 (181)
T ss_dssp             CCS--------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH
T ss_pred             ccc--------------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccc
Confidence            431                    011236899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCccEEEeccCCCCCC-C-CCCCCCCCceEEcCCCCC
Q 015895          280 VALVEHLKQNPMFRVGLDVFEDEPY-M-KPGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       280 ~aL~~aL~~g~i~gAalDV~~~EP~-~-~~~L~~~~nvilTPHia~  323 (398)
                      +||+++|++|++.||++|||+.||+ + ++||+.+|||++|||+||
T Consensus       136 ~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         136 DGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             HHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             hhhhhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            9999999999999999999987764 3 358999999999999997

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=8.7e-27  Score=198.22  Aligned_cols=128  Identities=22%  Similarity=0.283  Sum_probs=115.0

Q ss_pred             CCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        14 ~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      +++|||+++++++. .++.|++. +++.+...    .+++|+.+.+.+ +|++++++.+++++++++++|+|  |+|++.
T Consensus         1 sMpkvli~~~~~~~-~~~~L~~~-~~v~~~~~----~~~~el~~~~~~-~d~ii~~~~~~i~~~~l~~~p~L--k~I~~~   71 (130)
T d1ygya2           1 SLPVVLIADKLAPS-TVAALGDQ-VEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVARA   71 (130)
T ss_dssp             CCCEEEECSSCCGG-GGTTSCSS-SEEEECCT----TSHHHHHHHGGG-CSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCCEEEEECCCCHH-HHHHHhCC-cEEEECCC----CCHHHHHHHcCC-CEEEEEcCcccchHHHHhhcccc--eEEeee
Confidence            57899999999885 67888764 57665432    578999999875 99999998899999999999988  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCcc
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~  150 (398)
                      |+|+||||+++|+++||.|+|+|++++.+||||++++||+++|++..+++++|+|+|
T Consensus        72 g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          72 GVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             cccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            999999999999999999999999999999999999999999999998888888874

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.6e-24  Score=181.66  Aligned_cols=124  Identities=22%  Similarity=0.160  Sum_probs=104.3

Q ss_pred             CCCCeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEE
Q 015895           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (398)
Q Consensus        12 ~~~~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~   91 (398)
                      .+.|||||+++++++. .++.|++.|+......  ...++++++.+.+.+ +|++++++.+++++++++++|+|  |+|+
T Consensus         1 ek~kmKILv~d~i~~~-a~~~L~~~g~~~v~~~--~~~~~~~~l~~~~~~-~d~ii~~~~~~i~~~~i~~~p~L--k~I~   74 (132)
T d1sc6a2           1 EKDKIKFLLVEGVHQK-ALESLRAAGYTNIEFH--KGALDDEQLKESIRD-AHFIGLRSRTHLTEDVINAAEKL--VAIG   74 (132)
T ss_dssp             CCSSCCEEECSCCCHH-HHHHHHHTTCCCEEEC--SSCCCHHHHHHHTTS-CSEEEECSSCCBCHHHHHHCSSC--CEEE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHHhCCCEEEEeC--CCCCCHHHHHHhhcC-CcEEEEecccccChhhhhccccc--eeEE
Confidence            3678999999999885 7899999876543232  234689999999875 99999999999999999999998  9999


Q ss_pred             EeeccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHH
Q 015895           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE  143 (398)
Q Consensus        92 ~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~  143 (398)
                      +.|+|+||||+++|+++||.|+|+|++++.+|||+++.||+  .|+...++.
T Consensus        75 ~~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~  124 (132)
T d1sc6a2          75 AFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDN  124 (132)
T ss_dssp             ECSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             EecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhC
Confidence            99999999999999999999999999999999998766554  444444443

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.86  E-value=1.2e-22  Score=172.48  Aligned_cols=122  Identities=16%  Similarity=0.251  Sum_probs=98.3

Q ss_pred             eEEEEeCCCCc-hHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEe
Q 015895           16 YRVVSTKPMPG-TRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (398)
Q Consensus        16 ~kvlv~~~~~~-~~~~~~l-~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~   93 (398)
                      |||++.+..+. .+.++.+ ++.++++.....    ...+++.+.+. ++|+|+++..+++++++++++|+.++|+|++.
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~----~~~~~~~~~~~-~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~   75 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTE----FLDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSS----CCCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCC----CCCHHHHHHhc-CCCEEEEecCCCCCHHHHhhcccCCeEEEEEc
Confidence            68888654332 2345444 445777765432    12345555565 59999999889999999999997677999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHH
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD  142 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~  142 (398)
                      |+|+||||+++|+++||.|+|+|++++.+||||+++++|++.|++..++
T Consensus        76 ~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          76 NVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHH
Confidence            9999999999999999999999999999999999999999999987653

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.86  E-value=1e-21  Score=166.33  Aligned_cols=116  Identities=20%  Similarity=0.349  Sum_probs=99.0

Q ss_pred             CeEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhh-ccCCceEEEe
Q 015895           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALS-RAGGKAFSNM   93 (398)
Q Consensus        15 ~~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~-~l~~k~i~~~   93 (398)
                      |+||||+.+++++ .++.|++. +++.... .+...+++|+.+.+.+ +|+++++..+++++++++++| +|  |+|++.
T Consensus         1 K~kVlit~~~~~~-~~~~l~~~-~~v~~~~-~~~~~s~~el~~~~~~-~d~ii~~~~~~i~~~~l~~~~~~L--K~I~~~   74 (129)
T d1gdha2           1 KKKILITWPLPEA-AMARARES-YDVIAHG-DDPKITIDEMIETAKS-VDALLITLNEKCRKEVIDRIPENI--KCISTY   74 (129)
T ss_dssp             CCEEEESSCCCHH-HHHHHHTT-SEEEECC-STTCCCHHHHHHHHTT-CSEEEEETTSCBCHHHHHHSCTTC--CEEEEE
T ss_pred             CCEEEEeCCCCHH-HHHHHHcC-CcEEEeC-CCCCCCHHHHHHHhcC-CCEEEEcCCchhhhHHHhhhhhcc--eeeeec
Confidence            5789999999885 78889875 5765443 3445799999999885 999999988899999999997 56  999999


Q ss_pred             eccccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhh
Q 015895           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR  136 (398)
Q Consensus        94 g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R  136 (398)
                      |+|+||||+++|+++||+|+|+||+++.+|||+++++|+.+.+
T Consensus        75 gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          75 SIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999976655555444

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=8.9e-23  Score=171.07  Aligned_cols=121  Identities=10%  Similarity=0.092  Sum_probs=101.6

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (398)
                      |||+|+.++|++ ..+.|++. +++.  ...+           + .++|+++++   +++++.++++|+|  |+|++.|+
T Consensus         1 Mki~v~~~lp~e-~~e~L~~~-~~v~--~~~d-----------~-~~~d~~l~~---~~~~~~l~~~~~L--k~i~~~~a   59 (121)
T d1qp8a2           1 MELYVNFELPPE-AEEELRKY-FKIV--RGGD-----------L-GNVEAALVS---RITAEELAKMPRL--KFIQVVTA   59 (121)
T ss_dssp             CEEECCSCCCHH-HHHHHHTT-CEEE--CSSC-----------C-TTBCCCCBS---CCCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEeCCCCHH-HHHHhhhc-ceEe--eccc-----------c-cccceeeee---ccCHHHHhcCCCc--eEEEeccc
Confidence            789999999975 78888774 3332  2221           1 247776664   6889999999998  99999999


Q ss_pred             cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 015895           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (398)
Q Consensus        96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~  175 (398)
                      |+||+|++++. +||.|+|+||+|+.++|||+++++|++.|+                              +||+|+|+
T Consensus        60 G~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~------------------------------l~i~G~G~  108 (121)
T d1qp8a2          60 GLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN------------------------------LITYATGG  108 (121)
T ss_dssp             CCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH------------------------------HHHHHTTS
T ss_pred             CcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC------------------------------EEEEcCCH
Confidence            99999999885 699999999999999999999999999983                              58999999


Q ss_pred             hHHHHHHHHHhcCC
Q 015895          176 IGSAYARMMVEGFK  189 (398)
Q Consensus       176 IG~~vA~~la~~fG  189 (398)
                      ||+++|+|+ ++||
T Consensus       109 iG~~iA~r~-~a~G  121 (121)
T d1qp8a2         109 RPRNIAKRE-DYIG  121 (121)
T ss_dssp             CCSCBCCGG-GTC-
T ss_pred             HHHHHHHHH-HhcC
Confidence            999999996 8987

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.81  E-value=1.2e-20  Score=166.75  Aligned_cols=117  Identities=16%  Similarity=0.096  Sum_probs=102.6

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCceEEEeeccccccCchHhh
Q 015895           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (398)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~--~~~~~~~~l~~~~~l~~k~i~~~g~G~d~iD~~~~~  106 (398)
                      +.+.|++.|+++.+....+  .+.+++.+.+.+ +|++|+++  .+++++|+++++|+|  |+|+++|+|+||||+++|+
T Consensus        59 lr~~Le~~GhelV~~sd~~--~~~~el~k~l~D-ADivI~~pf~~~~lt~e~i~~ap~L--KlI~~~g~G~D~VDl~aa~  133 (186)
T d2naca2          59 LRKYLESNGHTLVVTSDKD--GPDSVFERELVD-ADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAI  133 (186)
T ss_dssp             CHHHHHHTTCEEEEESCCS--STTSHHHHHHTT-CSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHHCCCEEEEecCCC--CChHHHHhhccc-CCEEEEecccccccCHHHHhcCccc--eEEEEeccCCccccHHHHH
Confidence            3577889999987765443  355678888875 99999985  578999999999998  9999999999999999999


Q ss_pred             hcCceEEecCCCCCchHHHHH--------HHHHHHHhhchHHHHHHHHcCcc
Q 015895          107 KYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIVEADEFMRAGLY  150 (398)
Q Consensus       107 ~~gI~V~n~p~~~~~~vAE~~--------l~l~L~~~R~~~~~~~~~~~g~~  150 (398)
                      ++||.|+|+||+|+.+||||+        +.+++...|++...+..+++|+|
T Consensus       134 e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         134 DRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             hCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            999999999999999999999        77888889999888888888875

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.79  E-value=4.7e-20  Score=156.56  Aligned_cols=123  Identities=20%  Similarity=0.241  Sum_probs=96.4

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (398)
Q Consensus        16 ~kvlv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (398)
                      ++|++.+..+-...+..|++.+ ++.++..    .+.+|+.+.+.+++|+++++..+++++++++++|+|  |+|++.|+
T Consensus         2 P~v~~ld~~d~~~e~~~L~~~~-~v~~~~~----~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~L--k~I~~~g~   74 (133)
T d1mx3a2           2 PLVALLDGRDCTVEMPILKDVA-TVAFCDA----QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIVRIGS   74 (133)
T ss_dssp             CEEEESSCSCCTTTHHHHTTTC-EEEECCC----SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEEESSS
T ss_pred             CEEEEecCCcchhhHHHhcccc-eEEEecC----CChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCC--eEEEEcCC
Confidence            5677766544322367787653 5655432    244555443323488899998999999999999988  99999999


Q ss_pred             cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCcc
Q 015895           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (398)
Q Consensus        96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~  150 (398)
                      |+||||+++|+++||.|+|+|++++. +|||+++++|+++|+++++.    +|+|
T Consensus        75 G~d~iD~~~~~~~gI~v~n~p~~~~~-vAE~a~~lil~~~R~i~~a~----~g~~  124 (133)
T d1mx3a2          75 GFDNIDIKSAGDLGIAVCNVPAASVY-SEQASIEMREEAAREIRRAI----TGRI  124 (133)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCSTTHC-CHHHHHHHHHHHHHHHHHHH----HSCT
T ss_pred             CcccEeeeeheeCCEEEEcCCCCCch-hHHHHHHHHHHHHhhHHHHH----hccc
Confidence            99999999999999999999999885 79999999999999998764    5554

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.79  E-value=1.1e-19  Score=154.60  Aligned_cols=125  Identities=20%  Similarity=0.210  Sum_probs=95.5

Q ss_pred             EEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCceEEEeec
Q 015895           17 RVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (398)
Q Consensus        17 kvlv~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~~~d~vi~~~~~~~~~~~l~~~~~l~~k~i~~~g~   95 (398)
                      ||++-...++ ..+++.+.+..+++++...++ ..+ +|+.+.+. ++|+|+++..++++++++++++++++|+|++.|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~-~~~-~e~~~~~~-~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK-LLT-PETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSS-CCC-TTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCC-CCC-HHHHHHhc-CCCEEEEecCCCcCHHHHhhhcccCeeEEEEccC
Confidence            6777543332 235556555444454443332 234 56666665 5999999989999999999998877899999999


Q ss_pred             cccccCchHhhhcCceEEecCCCCCchHHHHHHHHHHHHhhchHHHHHHHHcCcc
Q 015895           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (398)
Q Consensus        96 G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~~  150 (398)
                      |+||||+++|+++||.|+|+|++   ++|||++++||+++|++.   ..+.+|++
T Consensus        79 G~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~---~~~~~~k~  127 (134)
T d1j4aa2          79 GVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNN---LELVEGKE  127 (134)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHH---HHHHTTCC
T ss_pred             CcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHh---HHHhhhhc
Confidence            99999999999999999999987   579999999999999864   45556664

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.7e-17  Score=141.22  Aligned_cols=122  Identities=20%  Similarity=0.327  Sum_probs=97.9

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+..|.||+++|+|||.||+.+|+++ ++|||+|++||++|-..++...+.              + .+.++++++..+|
T Consensus        18 t~~~l~Gk~v~V~GyG~iG~g~A~~~-rg~G~~V~v~e~dp~~al~A~~dG--------------~-~v~~~~~a~~~ad   81 (163)
T d1li4a1          18 TDVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAMEG--------------Y-EVTTMDEACQEGN   81 (163)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTT--------------C-EECCHHHHTTTCS
T ss_pred             hCceecCCEEEEeccccccHHHHHHH-HhCCCeeEeeecccchhHHhhcCc--------------e-Eeeehhhhhhhcc
Confidence            34679999999999999999999997 899999999999997766653321              2 2358999999999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC-CCchhcHHHHHHHHhcCCccEEEeccCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a-RG~~vde~aL~~aL~~g~i~gAalDV~~  300 (398)
                      +++.++.    ++++|+.+.|++||+|++|.|++ +..-||.++|.+...+.+.....+|.|.
T Consensus        82 ivvtaTG----n~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          82 IFVTTTG----CIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             EEEECSS----CSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EEEecCC----CccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            9988764    68899999999999999999997 4666999998876554433334444443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.44  E-value=2e-13  Score=118.41  Aligned_cols=113  Identities=18%  Similarity=0.178  Sum_probs=93.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|++| ...|.+|++||+++... +.+        .+.+     .....+..|++++||+|++|+|
T Consensus         1 MkIgiIGlG~MG~~~A~~L-~~~G~~V~~~d~~~~~~-~~~--------~~~~-----~~~~~~~~e~~~~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAI-ADV--------IAAG-----AETASTAKAIAEQCDVIITMLP   65 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHH--------HHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEehhHHHHHHHHHH-HHCCCeEEEEeCCcchh-HHH--------HHhh-----hhhcccHHHHHhCCCeEEEEcC
Confidence            5799999999999999998 57899999999988653 221        1122     2345789999999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccE
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      ..++.+.++.  ...+..+++|.++||+++...-....+.+.+++..+..
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~  115 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEM  115 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             CHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCce
Confidence            9888888763  45888999999999999999988899999999876544

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.42  E-value=3.1e-13  Score=116.84  Aligned_cols=103  Identities=20%  Similarity=0.301  Sum_probs=87.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..+.||++.|+|||.+|+.+|+++ +++|++|++++.+|-..++...+              +++ +.+++|+++.+|++
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~-rg~Ga~V~V~E~DPi~alqA~md--------------Gf~-v~~~~~a~~~aDi~   82 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVME--------------GFN-VVTLDEIVDKGDFF   82 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTT--------------TCE-ECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEecccccchhHHHHH-HhCCCEEEEEecCchhhHHHHhc--------------CCc-cCchhHccccCcEE
Confidence            469999999999999999999997 89999999999998776654322              233 46899999999999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~-vde~aL~  283 (398)
                      +.++..    +++|+.++|..||+|+++-|+++... ||-++|.
T Consensus        83 vTaTGn----~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          83 ITCTGN----VDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             EECCSS----SSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             EEcCCC----CccccHHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            999874    66899999999999999999999765 5555554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.37  E-value=6.5e-12  Score=108.63  Aligned_cols=142  Identities=14%  Similarity=0.063  Sum_probs=95.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|+||+++|+.| +..|.+|++|||+.....+.         ...+..   ... .+..+.+++||+|++++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l-~~~g~~V~~~d~~~~~~~~a---------~~~~~~---~~~-~~~~~~~~~~DiIilavp   66 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTCEKA---------VERQLV---DEA-GQDLSLLQTAKIIFLCTP   66 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTTSC---SEE-ESCGGGGTTCSEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEECCchHHHHH---------HHhhcc---cee-eeecccccccccccccCc
Confidence            5799999999999999998 68899999999987542211         111211   111 233467899999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCC-CC-CCCCCCCCCceEEcCCCCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PY-MKPGLSEMKNAIVVPHIAS  323 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~E-P~-~~~~L~~~~nvilTPHia~  323 (398)
                      . ..+..++ ++....+++++++++++.......... ..+....+..-.+...+.. |. ..+.|+....+++||+-++
T Consensus        67 ~-~~~~~vl-~~l~~~l~~~~iv~~~~s~~~~~~~~~-~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~  143 (165)
T d2f1ka2          67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEPA-SQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT  143 (165)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHHH-HHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred             H-hhhhhhh-hhhhhhcccccceeeccccchHHHHHH-HHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCC
Confidence            5 4677777 467788999999999987664444443 3444444433333332222 11 1245778788999998654


Q ss_pred             C
Q 015895          324 A  324 (398)
Q Consensus       324 ~  324 (398)
                      .
T Consensus       144 ~  144 (165)
T d2f1ka2         144 D  144 (165)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.31  E-value=4e-12  Score=110.18  Aligned_cols=116  Identities=21%  Similarity=0.227  Sum_probs=93.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|.||+.+|++| ...|.+|.+||+++.... .        +...+     .....++.|++..+|+|++++|
T Consensus         2 ~kIg~IGlG~MG~~iA~~L-~~~g~~v~~~d~~~~~~~-~--------~~~~~-----~~~~~~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNL-LKAGYLLNVFDLVQSAVD-G--------LVAAG-----ASAARSARDAVQGADVVISMLP   66 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSSHHHHH-H--------HHHTT-----CEECSSHHHHHTSCSEEEECCS
T ss_pred             CEEEEEEEHHHHHHHHHHH-HHCCCeEEEEECchhhhh-h--------hhhhh-----ccccchhhhhccccCeeeeccc
Confidence            5799999999999999998 578999999999876532 1        11112     2234689999999999999999


Q ss_pred             CChhhhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEecc
Q 015895          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (398)
Q Consensus       246 lt~~T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV  298 (398)
                      ..+..+.++.  ...+..+++|.++||++...+-+...+.+.+++..+  ..+|.
T Consensus        67 ~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi--~~~da  119 (162)
T d3cuma2          67 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLDA  119 (162)
T ss_dssp             CHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEEC
T ss_pred             chhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCC--cEEec
Confidence            8887777663  447888999999999999999999999999988765  44554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.28  E-value=3.9e-11  Score=103.95  Aligned_cols=148  Identities=16%  Similarity=0.098  Sum_probs=100.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e-ll~~aDiV~l  242 (398)
                      |+|+|||+|.||.++|+.| +..|  .+|++||++.......         ...+..   .....+.++ ....+|+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L-~~~g~~~~I~~~D~~~~~~~~a---------~~~~~~---~~~~~~~~~~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISKA---------VDLGII---DEGTTSIAKVEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHH---------HHTTSC---SEEESCGGGGGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHH-HhcCCCeEEEEEECChHHHHHH---------HHhhcc---hhhhhhhhhhhccccccccc
Confidence            5799999999999999998 4544  5899999987653211         111211   111233333 3357999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCC-CC-CCCCCCCCCceEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PY-MKPGLSEMKNAIVVPH  320 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~E-P~-~~~~L~~~~nvilTPH  320 (398)
                      |+|. .++..++ .+....+++++++++++.....-.+++.+.+....+.+--+...+.. |. ....|++..++++|||
T Consensus        69 a~p~-~~~~~vl-~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~  146 (171)
T d2g5ca2          69 SSPV-RTFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPT  146 (171)
T ss_dssp             CSCH-HHHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCC
T ss_pred             cCCc-hhhhhhh-hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecC
Confidence            9994 3455555 45667799999999999977666677777777766667666554433 21 2346898899999999


Q ss_pred             CCCCcHHHH
Q 015895          321 IASASKWTR  329 (398)
Q Consensus       321 ia~~T~ea~  329 (398)
                      -.. +.++.
T Consensus       147 ~~~-~~~~~  154 (171)
T d2g5ca2         147 KKT-DKKRL  154 (171)
T ss_dssp             SSS-CHHHH
T ss_pred             CCC-CHHHH
Confidence            653 44443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.20  E-value=4.5e-11  Score=104.69  Aligned_cols=123  Identities=13%  Similarity=0.184  Sum_probs=92.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      -++|||||+|+||..+|++| ...|.+|++||+++++. +.+.+..     .......+.....++.+.+..+|.+++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKV-DDFLANE-----AKGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHH-HHHHHTT-----TTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CCcEEEEeEhHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHHhc-----cccccccchhhhhhhhhhhcccceEEEec
Confidence            35799999999999999998 46799999999998653 2221110     00011112223345667788999999999


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEec
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalD  297 (398)
                      |..+.+...+ .+.+..+++|.++||++...+-+...+.+.+....+  ..+|
T Consensus        75 ~~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~--~~ld  124 (176)
T d2pgda2          75 KAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI--LFVG  124 (176)
T ss_dssp             CTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC--EEEE
T ss_pred             CchHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCC--ceec
Confidence            9988877765 578899999999999999999999999999987655  4445

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.97  E-value=9.4e-10  Score=93.72  Aligned_cols=106  Identities=9%  Similarity=0.014  Sum_probs=76.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|+||+.+|++| ...|.+|++||+.++.......+.              .....+++|++++||+|++++|
T Consensus         1 MkIgiIG~G~mG~~ia~~l-~~~g~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~e~~~~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRL-RSRGVEVVTSLEGRSPSTIERART--------------VGVTETSEEDVYSCPVVISAVT   65 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCEEEECCTTCCHHHHHHHHH--------------HTCEECCHHHHHTSSEEEECSC
T ss_pred             CEEEEEcHHHHHHHHHHHH-HHCCCeEEEEcCchhHHHHHhhhc--------------ccccccHHHHHhhcCeEEEEec
Confidence            5799999999999999998 577999999998776533221111              1123578899999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      ... ....+ .+...  ..+..+|+++.........+.+.+++.+
T Consensus        66 ~~~-~~~~~-~~~~~--~~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          66 PGV-ALGAA-RRAGR--HVRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             GGG-HHHHH-HHHHT--TCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             Cch-HHHHH-Hhhcc--cCCceeeccCcCCHHHHHHHHHHHhccC
Confidence            643 33332 12222  2367999999998888888888887643

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.97  E-value=1e-09  Score=93.99  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=81.3

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCC
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Pl  246 (398)
                      +|||||+|+||..+|++|. ..|..+ +|++..++..+. .+..       +     . . .+..+.+.++|++++++|.
T Consensus         2 kIg~IGlG~MG~~ma~~L~-~~g~~~-~~~~~~~~~~~~-~~~~-------~-----~-~-~~~~~~~~~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLA-RRFPTL-VWNRTFEKALRH-QEEF-------G-----S-E-AVPLERVAEARVIFTCLPT   64 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHH-TTSCEE-EECSSTHHHHHH-HHHH-------C-----C-E-ECCGGGGGGCSEEEECCSS
T ss_pred             eEEEEeHHHHHHHHHHHHH-hCCCEE-EEeCCHHHHHHH-HHHc-------C-----C-c-ccccccccceeEEEecccc
Confidence            6999999999999999985 566655 566655443221 1110       1     1 1 2234556789999999998


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEE
Q 015895          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (398)
Q Consensus       247 t~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA  294 (398)
                      .++..... ...+..++++.++||+++...-....+.+.+++..+...
T Consensus        65 ~~~v~~~~-~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~l  111 (156)
T d2cvza2          65 TREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYL  111 (156)
T ss_dssp             HHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             hhhhhhhh-ccccccccccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence            77766554 578999999999999999999999999999998765443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.89  E-value=3.5e-09  Score=89.82  Aligned_cols=95  Identities=14%  Similarity=0.189  Sum_probs=74.0

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ..-++|+||| +|.||+.+|++| +..|++|.+||+....                           +.++.++.+|+++
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L-~~~G~~V~~~d~~~~~---------------------------~~~~~~~~~~~v~   58 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWA---------------------------VAESILANADVVI   58 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGG---------------------------GHHHHHTTCSEEE
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHH-HHcCCCcEeccccccc---------------------------ccchhhhhccccc
Confidence            4557899999 999999999998 6889999999986532                           3456678999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~  287 (398)
                      +++|. ..+.. +-.+.+..++++++++|++.-..--.+++.+.+.
T Consensus        59 ~~~~~-~~~~~-v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~  102 (152)
T d2pv7a2          59 VSVPI-NLTLE-TIERLKPYLTENMLLADLTSVKREPLAKMLEVHT  102 (152)
T ss_dssp             ECSCG-GGHHH-HHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS
T ss_pred             cccch-hhhee-eeecccccccCCceEEEecccCHHHHHHHHHHcc
Confidence            99995 33333 4467889999999999999866544455555443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.88  E-value=4.5e-09  Score=91.46  Aligned_cols=128  Identities=16%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH---HHhhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~---ell~~aDiV~l  242 (398)
                      ++|||||+|+||..+|++| ...|++|++||+++++.. .+.+.......     ........+.+   ..+..++.+.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L-~~~G~~V~~~dr~~~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNI-AEKGFKVAVFNRTYSKSE-EFMKANASAPF-----AGNLKAFETMEAFAASLKKPRKALI   74 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHHH-HHHHHTTTSTT-----GGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHH-HHCCCeEEEEECCHHHHH-HHHHcCCcccc-----ccchhhhhhhhHHHHhcccceEEEE
Confidence            5799999999999999998 578999999999886532 22221110000     00011122333   44578899999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~  301 (398)
                      +++........+ ......+++|.++||+++...-+...+.+.|....+...-.-|+..
T Consensus        75 ~~~~~~~~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~  132 (178)
T d1pgja2          75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGG  132 (178)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESH
T ss_pred             eecCcchhhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCC
Confidence            998777766666 4567889999999999999999999999999887765544444543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.84  E-value=1.7e-08  Score=85.96  Aligned_cols=102  Identities=17%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|+||+++++.| ...|.++++|+++.... +++.+.+       +     .....+.+|++++||+|+++++
T Consensus         1 MkIg~IG~G~mG~al~~~l-~~~~~~i~v~~r~~~~~-~~l~~~~-------g-----~~~~~~~~~~~~~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL-------A-----LPYAMSHQDLIDQVDLVILGIK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH-------T-----CCBCSSHHHHHHTCSEEEECSC
T ss_pred             CEEEEEeccHHHHHHHHHH-HhCCCeEEEEcChHHhH-Hhhcccc-------c-----eeeechhhhhhhccceeeeecc
Confidence            5799999999999999998 57789999999986543 2221211       2     2234689999999999999997


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       246 lt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                        |+..    ++.++.++++..+|+++-|  +..+.|.+.+..+
T Consensus        67 --p~~~----~~vl~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          67 --PQLF----ETVLKPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             --GGGH----HHHHTTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             --hHhH----HHHhhhcccceeEeccccc--ccHHHHHhhhccc
Confidence              3321    4667889999999999887  4556677777543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.64  E-value=2.9e-08  Score=85.80  Aligned_cols=103  Identities=17%  Similarity=0.311  Sum_probs=75.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      .+.-.++.|||.|..|.+-++.+ +++|++|.++|.+... +++....+......      .......+++.+++||+|+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A-~~lGA~V~~~D~~~~~-l~~l~~~~~~~~~~------~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMA-VGLGAQVQIFDINVER-LSYLETLFGSRVEL------LYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHH-HHHHHHHHGGGSEE------EECCHHHHHHHHHTCSEEE
T ss_pred             CCCCcEEEEECCChHHHHHHHHH-hhCCCEEEEEeCcHHH-HHHHHHhhccccee------ehhhhhhHHHhhccCcEEE
Confidence            35678999999999999999985 8999999999998764 33322222211110      0111124788899999997


Q ss_pred             Ec--cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LH--PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~--~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .+  +|. ..+..+|.++.++.||+|+++||++=
T Consensus       101 ~aalipG-~~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         101 GAVLVPG-RRAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             ECCCCTT-SSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             EeeecCC-cccCeeecHHHHhhcCCCcEEEEeec
Confidence            55  453 46789999999999999999999954

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.53  E-value=3.1e-07  Score=78.99  Aligned_cols=120  Identities=15%  Similarity=0.195  Sum_probs=76.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcCCCC--ccccccCCHHHHhhcCCEEE
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQP--VTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~sl~ell~~aDiV~  241 (398)
                      .||++|||.|.||..+|..| ...|++|.+||+++... +...+. +.... ..+...  .......++.|.++.||+|+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l-~~~G~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDR-GAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHH-TSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECccHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHHc-CCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            37999999999999999998 57899999999986542 221110 00000 000000  01112357899999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~  290 (398)
                      +++|. ..++.++ ++.-..++++.+++-+. |....+..+.+.++...
T Consensus        78 i~v~~-~~~~~~~-~~i~~~l~~~~~iv~~~-g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          78 IVVPA-IHHASIA-ANIASYISEGQLIILNP-GATGGALEFRKILRENG  123 (184)
T ss_dssp             ECSCG-GGHHHHH-HHHGGGCCTTCEEEESS-CCSSHHHHHHHHHHHTT
T ss_pred             EEEch-hHHHHHH-HHhhhccCCCCEEEEeC-CCCccHHHHHHHHHHhc
Confidence            99994 4455554 45667889999888554 33344445555555443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.46  E-value=1.4e-07  Score=75.99  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+++||+|+|||.|.+|..-|++| ..+|++|+++++...+....+.+.        +  ...+....--++.+..+|+|
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~l-l~~ga~v~v~~~~~~~~~~~~~~~--------~--~i~~~~~~~~~~dl~~~~lv   76 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTVWANE--------G--MLTLVEGPFDETLLDSCWLA   76 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHTT--------T--SCEEEESSCCGGGGTTCSEE
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeccCChHHHHHHhc--------C--CceeeccCCCHHHhCCCcEE
Confidence            579999999999999999999998 699999999999887765443221        1  11121111113446789998


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +.+...     ..+|++..+.+|+..++||++
T Consensus        77 ~~at~d-----~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          77 IAATDD-----DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EECCSC-----HHHHHHHHHHHHHTTCEEEET
T ss_pred             eecCCC-----HHHHHHHHHHHHHcCCEEEeC
Confidence            877653     335677778888889999975

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.40  E-value=4.4e-08  Score=82.72  Aligned_cols=89  Identities=10%  Similarity=0.065  Sum_probs=57.2

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCC
Q 015895          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (398)
Q Consensus       168 vGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt  247 (398)
                      |||||+|+||+.+|+.| +.-+..+.+|+|++... +.+.+.        +.     ....+++|++++||+|++|+|. 
T Consensus         2 IgfIG~G~mg~~l~~~L-~~~~~~~~v~~R~~~~~-~~l~~~--------~~-----~~~~~~~~~~~~~DiVil~v~d-   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECL-KDRYEIGYILSRSIDRA-RNLAEV--------YG-----GKAATLEKHPELNGVVFVIVPD-   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTT-C----CCCEECSSHHHH-HHHHHH--------TC-----CCCCSSCCCCC---CEEECSCT-
T ss_pred             EEEEeCcHHHHHHHHHH-HhCCCEEEEEeCChhhh-cchhhc--------cc-----ccccchhhhhccCcEEEEeccc-
Confidence            79999999999999987 44333345899987653 222221        11     1234677889999999999995 


Q ss_pred             hhhhhhccHHHHhcC-CCCcEEEEcCCCchh
Q 015895          248 KTTYHLINKERLATM-KKEAILVNCSRGPVI  277 (398)
Q Consensus       248 ~~T~~li~~~~~~~m-k~gailIN~aRG~~v  277 (398)
                      +...     +.+..+ +++.++|+++.+...
T Consensus        66 ~~i~-----~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          66 RYIK-----TVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             TTHH-----HHHTTTCCSSCCEEECCSSSCG
T ss_pred             hhhh-----HHHhhhcccceeeeecccchhh
Confidence            3333     345555 479999999987654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.38  E-value=2.8e-07  Score=80.51  Aligned_cols=108  Identities=19%  Similarity=0.228  Sum_probs=71.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh--c----CCCCcccc----------c
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--N----GEQPVTWK----------R  226 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~----------~  226 (398)
                      +.--+|.|||.|..|.+-++.+ +++|++|.+||.+.... ++.-..++.++.-  .    .....++.          .
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A-~~lGA~V~v~D~~~~~~-~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATA-KRLGAVVMATDVRAATK-EQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCSTTH-HHHHHTTCEECCC-----------------------CCH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHH-HHcCCEEEEEeccHHHH-HHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            5566899999999999999984 89999999999887542 2211111111100  0    00000000          0


Q ss_pred             cCCHHHHhhcCCEEEE--ccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          227 ASSMDEVLREADVISL--HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       227 ~~sl~ell~~aDiV~l--~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ...+.+.+++||+|+.  .+|. ..+..+|.++.++.||+|+++||++=
T Consensus       105 ~~~l~~~l~~aDlVI~talipG-~~aP~lit~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         105 AEAVLKELVKTDIAITTALIPG-KPAPVLITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTT-SCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHHHhhhhheeeeecCC-cccceeehHHHHHhcCCCcEEEEEee
Confidence            1125566889999974  4664 34678899999999999999999853

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.31  E-value=1.3e-06  Score=74.65  Aligned_cols=98  Identities=15%  Similarity=0.229  Sum_probs=68.6

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+.++++.|||.|.||+.+++.| ...|. ++.+++|+.... +.+...+       +   ..+....++.+.+.++|+|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L-~~~g~~~i~v~nRt~~ka-~~l~~~~-------~---~~~~~~~~~~~~l~~~Div   88 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDL-------G---GEAVRFDELVDHLARSDVV   88 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHH-------T---CEECCGGGHHHHHHTCSEE
T ss_pred             CcccCeEEEECCCHHHHHHHHHH-HhcCCcEEEEEcCcHHHH-HHHHHhh-------h---cccccchhHHHHhccCCEE
Confidence            58999999999999999999998 57787 799999986542 2222222       1   1122345788889999999


Q ss_pred             EEccCCChhhhhhccHHHHhcC------CCCcEEEEcCCC
Q 015895          241 SLHPVLDKTTYHLINKERLATM------KKEAILVNCSRG  274 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~m------k~gailIN~aRG  274 (398)
                      +.+++   ....+|+++.++..      ++..++||.+..
T Consensus        89 i~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          89 VSATA---APHPVIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             EECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             EEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            99987   34566776666422      234477776654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.30  E-value=1.1e-06  Score=74.16  Aligned_cols=107  Identities=19%  Similarity=0.226  Sum_probs=69.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|||||+|+||+++++.|.+.-+.+|.+|||+++.. +.+.+.+       +     .....+.++ +++||+|+++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~-~~l~~~~-------~-----~~~~~~~~~-v~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKR-ERLEKEL-------G-----VETSATLPE-LHSDDVLILAVK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHH-HHHHHHT-------C-----CEEESSCCC-CCTTSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHH-HHhhhhc-------c-----ccccccccc-ccccceEEEecC
Confidence            5799999999999999987544348999999997543 2221111       2     222344444 578999999997


Q ss_pred             CChhhhhhccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhc-CCccEE
Q 015895          246 LDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQ-NPMFRV  294 (398)
Q Consensus       246 lt~~T~~li~~~~~~~m-k~gailIN~aRG~~vde~aL~~aL~~-g~i~gA  294 (398)
                      - .+..     +.++.+ +.+.++|++.-|--  .+.|.+.+.. .++..+
T Consensus        67 P-~~~~-----~v~~~l~~~~~~viS~~ag~~--~~~l~~~l~~~~~iir~  109 (152)
T d1yqga2          67 P-QDME-----AACKNIRTNGALVLSVAAGLS--VGTLSRYLGGTRRIVRV  109 (152)
T ss_dssp             H-HHHH-----HHHTTCCCTTCEEEECCTTCC--HHHHHHHTTSCCCEEEE
T ss_pred             H-HHHH-----HhHHHHhhcccEEeecccCCC--HHHHHHHhCcCcceEee
Confidence            1 2222     333334 34789999988754  4667777743 334444

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.23  E-value=2.2e-06  Score=76.08  Aligned_cols=107  Identities=22%  Similarity=0.272  Sum_probs=77.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aDiV  240 (398)
                      .|.||||+|-|+|++|+.+|+.| ..+|++|+++|.+.......         ...+     . ...+.++++. .||++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L-~~~Gakvvv~d~d~~~~~~~---------~~~g-----~-~~~~~~~~~~~~~DI~   87 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTERVAHA---------VALG-----H-TAVALEDVLSTPCDVF   87 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTT-----C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEecchHHHHHHH---------Hhhc-----c-cccCccccccccceee
Confidence            59999999999999999999998 68999999999987542111         0111     1 1235667764 79998


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +-|.     +.+.|+++...+++- .+++..+-+.+.+++ ..+.|++..|
T Consensus        88 iPcA-----~~~~I~~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI  131 (201)
T d1c1da1          88 APCA-----MGGVITTEVARTLDC-SVVAGAANNVIADEA-ASDILHARGI  131 (201)
T ss_dssp             EECS-----CSCCBCHHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTC
T ss_pred             eccc-----ccccccHHHHhhhhh-heeeccCCCCcchhh-HHHHhcccce
Confidence            8654     367899999999974 467777777777664 3456666554

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=6.3e-06  Score=72.34  Aligned_cols=120  Identities=13%  Similarity=0.115  Sum_probs=81.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCC-------------ccccccCCH
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQP-------------VTWKRASSM  230 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-------------~~~~~~~sl  230 (398)
                      |+|+|||.|.||+.+|..+ ...|++|+.||+++....  .+..+..-..+...+...             .......++
T Consensus         5 kkvaViGaG~mG~~iA~~~-a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVA-AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEEECcCHHHHHHHHHH-HhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            6899999999999999987 478999999999986421  111111100011111100             012234578


Q ss_pred             HHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       231 ~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      .+.+++||+|+=++|-+-+.+.-+-++.=+.++++++|...+.+-.+  ..|.+.+..
T Consensus        84 ~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~  139 (192)
T d1f0ya2          84 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQI--TSIANATTR  139 (192)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCH--HHHHTTSSC
T ss_pred             HhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccccc--chhhhhccC
Confidence            89999999999999988887776667777778999999877665443  446665554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.06  E-value=1.7e-05  Score=69.76  Aligned_cols=158  Identities=11%  Similarity=0.062  Sum_probs=90.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      |+|+|||+|.+|..+|-.++ ..|.+|++||..... .+.+....        ...+... ..........++++.++.|
T Consensus         1 MkI~ViGlG~vGl~~a~~la-~~g~~V~g~D~n~~~-i~~ln~g~~p~~e~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~   77 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTK-IDLINQGKSPIVEPGLEALLQQG-RQTGRLSGTTDFKKAVLDS   77 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHH-HHHHHTTCCSSCCTTHHHHHHHH-HHTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHhHHHHHHHHH-hCCCcEEEEeCCHHH-HHHhcccCCcccchhhhhhhhhh-hcccccccCCCHHHHHhhC
Confidence            57999999999999999984 789999999987643 22111000        0000000 0000112335788989999


Q ss_pred             CEEEEccCCChh---------hhhhcc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH-hc--CCccEEEec-cCCCC
Q 015895          238 DVISLHPVLDKT---------TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRVGLD-VFEDE  302 (398)
Q Consensus       238 DiV~l~~Plt~~---------T~~li~--~~~~~~mk~gailIN~aRG~~vde~aL~~aL-~~--g~i~gAalD-V~~~E  302 (398)
                      |++++|+|....         ....++  ...+...+++.++|-.|...+--.+.+...+ ++  +...+--+. +|.+|
T Consensus        78 d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE  157 (202)
T d1mv8a2          78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (202)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             CEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhh
Confidence            999999995211         112222  2355667889999999997776666654332 21  222221122 25555


Q ss_pred             CCCC----CCCCCCCceEEcCCCCCCcHHHHH
Q 015895          303 PYMK----PGLSEMKNAIVVPHIASASKWTRE  330 (398)
Q Consensus       303 P~~~----~~L~~~~nvilTPHia~~T~ea~~  330 (398)
                      =...    ..+...|++|+    |+.+.++.+
T Consensus       158 ~~~~G~a~~d~~~~~~iVi----G~~~~~~~~  185 (202)
T d1mv8a2         158 FLRESTAIKDYDFPPMTVI----GELDKQTGD  185 (202)
T ss_dssp             CCCTTSHHHHHHSCSCEEE----EESSHHHHH
T ss_pred             hhcccchhhhhcCCCeEEE----EeCCHHHHH
Confidence            4422    13556667665    555555433

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.00  E-value=4.3e-06  Score=73.28  Aligned_cols=108  Identities=12%  Similarity=0.143  Sum_probs=67.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      +-++|+|||.|.+|.++|..|+ .-|.+|..|+++.... +...+. -.....+.-..+.......+++++++.||+|++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La-~~g~~V~l~~r~~~~~-~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iii   83 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLS-KKCREVCVWHMNEEEV-RLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILF   83 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHH-TTEEEEEEECSCHHHH-HHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEE
T ss_pred             eeceEEEECCCHHHHHHHHHHH-HcCCeEEEEEecHHHH-HHHhhcccccccccccccccccccchhhhhccCCCCEEEE
Confidence            3357999999999999999984 6788999999876432 211110 000000000011122334679999999999999


Q ss_pred             ccCCChhhhhhccHH--H--HhcCCCCcEEEEcCCC
Q 015895          243 HPVLDKTTYHLINKE--R--LATMKKEAILVNCSRG  274 (398)
Q Consensus       243 ~~Plt~~T~~li~~~--~--~~~mk~gailIN~aRG  274 (398)
                      ++|. ...+.++.+-  .  ....+++..+|+++-|
T Consensus        84 avPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          84 VIPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             CSCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             cCcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            9993 4445444321  1  1124567789999887

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.98  E-value=2e-05  Score=68.08  Aligned_cols=106  Identities=20%  Similarity=0.225  Sum_probs=66.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH-HHHHHhh-hhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|||.|.+|.++|..|+ .-|.+|..|.|...+. .+...+. ...... ............+++++++.||+|+++
T Consensus         1 MkI~ViGaG~~GtalA~~la-~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ad~Ii~a   78 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEILKSISAGREHPRLG-VKLNGVEIFWPEQLEKCLENAEVVLLG   78 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHHHHHHTTCCBTTTT-BCCCSEEEECGGGHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEEecccHHHHHHHhhhhhhhhhc-chhccccccccccHHHHHhccchhhcc
Confidence            58999999999999999985 5688999998865432 2221110 000000 000011122235789999999999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      +|. ...+.++. +....+++. .+|.++.|..
T Consensus        79 vps-~~~~~~~~-~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          79 VST-DGVLPVMS-RILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             SCG-GGHHHHHH-HHTTTCCSC-EEEECCCSEE
T ss_pred             cch-hhhHHHHH-hhccccccc-eecccccCcc
Confidence            994 45565553 344555554 6666777754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=4.9e-06  Score=70.01  Aligned_cols=97  Identities=9%  Similarity=0.075  Sum_probs=66.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      |+|+|||.|.||+.+|..| ...|.+|..+++.......         ....+..  ........+..+.+..+|+|+++
T Consensus         1 MkI~IiGaG~iG~~~a~~L-~~~G~~V~~~~r~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTAL-CKQGHEVQGWLRVPQPYCS---------VNLVETDGSIFNESLTANDPDFLATSDLLLVT   70 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCCSEEE---------EEEECTTSCEEEEEEEESCHHHHHTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHH-HHCCCceEEEEcCHHHhhh---------hccccCCccccccccccchhhhhcccceEEEe
Confidence            5899999999999999998 5789999999987754211         0001100  01111123445667899999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      ++. .++...+ +.....+++++.++.+.-|
T Consensus        71 vka-~~~~~~~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          71 LKA-WQVSDAV-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             SCG-GGHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             ecc-cchHHHH-HhhccccCcccEEeeccCc
Confidence            995 5566554 4455667889999888776

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.97  E-value=1.6e-05  Score=69.16  Aligned_cols=118  Identities=17%  Similarity=0.189  Sum_probs=78.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCCC-c-------cccccCCHHHHh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQP-V-------TWKRASSMDEVL  234 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~-~-------~~~~~~sl~ell  234 (398)
                      ++|+|||.|.||+.+|..++ ..|++|+.||++..... +..+.....+.   ..+... .       ......+.+ .+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a-~~G~~V~l~D~~~~~l~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~   81 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIE-QGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DF   81 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHH-HHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TG
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHHh-hhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-cc
Confidence            57999999999999998874 78999999999876421 11110000010   011000 0       011112233 36


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhc
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~  288 (398)
                      ..||+|+=++|-+-+.+.=+-++.-+.++++++|...+.+-.+  ..|.+.+..
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~  133 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALKR  133 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCSC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhccC
Confidence            8999999999998888877778888889999999888776544  556666553

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=7.7e-06  Score=63.14  Aligned_cols=73  Identities=23%  Similarity=0.187  Sum_probs=50.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      +++||+|.|+|+|..|+++|+.| ...|++|++||....+.....       +.. +   ..+.....-++.+.+.|+|+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L-~~~g~~v~~~D~~~~~~~~~~-------~~~-~---~~~~~~~~~~~~~~~~d~vi   69 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLDK-------LPE-A---VERHTGSLNDEWLMAADLIV   69 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHH-HHTTCCCEEEESSSSCTTGGG-------SCT-T---SCEEESBCCHHHHHHCSEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHH-HHCCCEEEEeeCCcCchhHHH-------Hhh-c---cceeecccchhhhccCCEEE
Confidence            58899999999999999999998 689999999998765432110       111 1   11111112256678999999


Q ss_pred             EccCC
Q 015895          242 LHPVL  246 (398)
Q Consensus       242 l~~Pl  246 (398)
                      +..-.
T Consensus        70 ~SPGi   74 (93)
T d2jfga1          70 ASPGI   74 (93)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            87543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.93  E-value=9.9e-06  Score=69.73  Aligned_cols=96  Identities=23%  Similarity=0.294  Sum_probs=70.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      -|++|+|+|||||.=|++=|..| +.-|.+|++=-+..++..+.        .+..|     +. +.+++|..++||+|.
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNL-rDSG~~V~VGLr~gs~s~~~--------A~~~G-----f~-v~~~~eA~~~aDiim   77 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAK--------AEAHG-----LK-VADVKTAVAAADVVM   77 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHH--------HHHTT-----CE-EECHHHHHHTCSEEE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhh-hhcCCCEEEEcCCCCccHHH--------Hhhhc-----cc-cccHHHHhhhcCeee
Confidence            47899999999999999999998 78899887655543322111        11122     32 358999999999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      +.+|. +.-..+..++....||+|+.|. .++|
T Consensus        78 ~L~PD-~~q~~vy~~~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          78 ILTPD-EFQGRLYKEEIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             ECSCH-HHHHHHHHHHTGGGCCTTCEEE-ESCC
T ss_pred             eecch-HHHHHHHHHhhhhhcCCCcEEE-Eecc
Confidence            99994 3334566678899999998775 4555

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.85  E-value=9.2e-05  Score=64.27  Aligned_cols=144  Identities=12%  Similarity=0.194  Sum_probs=89.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh-------hhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-------GQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      |+|+|||+|.+|..+|..+  +.|.+|++||...... +......       -..+.....  .......+..+...++|
T Consensus         1 MkI~ViGlG~vGl~~a~~~--a~g~~V~g~Din~~~v-~~l~~g~~p~~e~~l~~~~~~~~--~~~~~~~~~~~~~~~~~   75 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL--SLQNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKSKQ--LSIKATLDSKAAYKEAE   75 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH--TTTSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHHSC--CCEEEESCHHHHHHHCS
T ss_pred             CEEEEECCChhHHHHHHHH--HCCCcEEEEECCHHHH-HHHhhcccccchhhHHHHhhhhh--hhhhccchhhhhhhccc
Confidence            5799999999999999765  4699999999987542 1111000       000000000  11112235566678999


Q ss_pred             EEEEccCCChhhh-hhcc-------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCC-C--
Q 015895          239 VISLHPVLDKTTY-HLIN-------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P--  307 (398)
Q Consensus       239 iV~l~~Plt~~T~-~li~-------~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~-~--  307 (398)
                      ++++++|...+.. .+.+       .+.+...+++.++|--+.-.+-..+.+..-+.+.++      +|.+|-... +  
T Consensus        76 ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~------~~~PE~i~~G~ai  149 (196)
T d1dlja2          76 LVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRI------IFSPEFLRESKAL  149 (196)
T ss_dssp             EEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCE------EECCCCCCTTSTT
T ss_pred             cccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhh------ccchhhcchhhhH
Confidence            9999999754422 1111       223445578889999888877778888888877654      356676532 2  


Q ss_pred             -CCCCCCceEEcCC
Q 015895          308 -GLSEMKNAIVVPH  320 (398)
Q Consensus       308 -~L~~~~nvilTPH  320 (398)
                       .+...|++++--+
T Consensus       150 ~d~~~p~riv~G~~  163 (196)
T d1dlja2         150 YDNLYPSRIIVSCE  163 (196)
T ss_dssp             HHHHSCSCEEEECC
T ss_pred             hhccCCCEEEEeCC
Confidence             3556677776544

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=4.1e-05  Score=65.45  Aligned_cols=79  Identities=15%  Similarity=0.133  Sum_probs=65.0

Q ss_pred             ccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       160 g~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      +.++.||++.|||-+. +|+.+|..| ...|++|..++.+.                            .++.+.+++||
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL-~~~gatVt~~h~~t----------------------------~~l~~~~~~AD   82 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENAD   82 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCS
T ss_pred             CcccccceEEEEeccccccHHHHHHH-HHhhcccccccccc----------------------------chhHHHHhhhh
Confidence            4689999999999988 899999998 68899998876532                            35778889999


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      +|+.++..    .++|..+   ..|+|+++||++--
T Consensus        83 ivI~a~G~----p~~i~~~---~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          83 LLIVAVGK----PGFIPGD---WIKEGAIVIDVGIN  111 (166)
T ss_dssp             EEEECSCC----TTCBCTT---TSCTTCEEEECCCE
T ss_pred             HhhhhccC----ccccccc---ccCCCcEEEecCce
Confidence            99999974    5667654   46899999999754

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.72  E-value=6.5e-05  Score=66.66  Aligned_cols=95  Identities=21%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             cCC-CeEEEEecChhHHHHHHHHHhc------CCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 015895          163 LKG-QTVGVIGAGRIGSAYARMMVEG------FKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (398)
Q Consensus       163 l~g-ktvGIIGlG~IG~~vA~~la~~------fG~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell  234 (398)
                      ++| |+|+|||||.-|++=|..| +.      .|.+|++- .+..+....         .++.|...... .+.+.+|..
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNL-rDSG~~~~sgv~V~VGLr~gs~S~~k---------A~~dGf~v~~~-~v~~v~EAv  109 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNL-KDSLTEAKSDVVVKIGLRKGSNSFAE---------ARAAGFSEENG-TLGDMWETI  109 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHH---------HHHTTCCGGGT-CEEEHHHHH
T ss_pred             hcCCCEEEEEEeccHHHHHHHhC-hhhcccccCCceEEEEeCCCChhHHH---------HHHcCCccCCC-cccCHHHHH
Confidence            678 8999999999999999998 55      55666543 332222111         11223211111 134788999


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                      ++||+|.+.+|...+ ..+. ++....||+|+.|.=
T Consensus       110 ~~ADiVmiLlPDe~Q-~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         110 SGSDLVLLLISDSAQ-ADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HTCSEEEECSCHHHH-HHHH-HHHHHHSCTTCEEEE
T ss_pred             hhCCEEEEecchHHH-HHHH-HHHHHhcCCCceeee
Confidence            999999999995333 3455 478899999988764

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=9.2e-05  Score=63.55  Aligned_cols=84  Identities=18%  Similarity=0.313  Sum_probs=65.9

Q ss_pred             cccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          159 VGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .+.+++||++.|||-+. +|+.+|..| ..-|+.|..++.+.                            .++.+.+++|
T Consensus        33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL-~~~gatVt~~~~~t----------------------------~~l~~~~~~a   83 (170)
T d1a4ia1          33 TGVPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKG   83 (170)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTC
T ss_pred             hCcccccceEEEEecCCccchHHHHHH-HhccCceEEEeccc----------------------------ccHHHHHhhc
Confidence            34689999999999976 899999998 57899999887533                            3567788999


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhc
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vd  278 (398)
                      |+|+.+++.    .+++..+   ..|+|+++||++-..+.|
T Consensus        84 Divi~a~G~----~~~i~~~---~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          84 DILVVATGQ----PEMVKGE---WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             SEEEECCCC----TTCBCGG---GSCTTCEEEECCCBC---
T ss_pred             cchhhcccc----ccccccc---cccCCCeEeccCcccccc
Confidence            999999985    4556543   579999999998655444

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=5.1e-05  Score=61.70  Aligned_cols=76  Identities=12%  Similarity=0.226  Sum_probs=51.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cc-cccCCHHHH-hhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TW-KRASSMDEV-LREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~sl~el-l~~aDiV~l  242 (398)
                      |++.|+|+|++|+.+|+.| ...|.+|+++|.++... +.        +...+.... +. .....++++ +.+||.+++
T Consensus         1 k~~iIiG~G~~G~~la~~L-~~~g~~vvvid~d~~~~-~~--------~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NA--------YASYATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HH--------TTTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEecCcHHHH-HH--------HHHhCCcceeeecccchhhhccCCccccEEEE
Confidence            5789999999999999998 68999999999987542 21        111221110 10 111235555 789999999


Q ss_pred             ccCCChhhh
Q 015895          243 HPVLDKTTY  251 (398)
Q Consensus       243 ~~Plt~~T~  251 (398)
                      ++|.+.++.
T Consensus        71 ~~~~~~~~~   79 (134)
T d2hmva1          71 AIGANIQAS   79 (134)
T ss_dssp             CCCSCHHHH
T ss_pred             EcCchHHhH
Confidence            999755443

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.44  E-value=0.00022  Score=64.04  Aligned_cols=109  Identities=17%  Similarity=0.254  Sum_probs=76.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hcCCE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-~~aDi  239 (398)
                      .+|.|+|+.|-|+|++|+.+|+.| ...|++|++.|.+.... ..+.+.       .+.      ...+.++++ ..|||
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L-~~~Gakvv~~d~~~~~~-~~~~~~-------~g~------~~~~~~~~~~~~cDI   99 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAAV-SAAVAE-------EGA------DAVAPNAIYGVTCDI   99 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHH-------HCC------EECCGGGTTTCCCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEeecccHHHH-HHHHHh-------cCC------cccCCcccccccccE
Confidence            469999999999999999999998 68999999999886542 222111       111      112344443 67999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      ++-|.=     .+.|+++...+++- .+++-.+-..+.+.++- +.|.+..|
T Consensus       100 l~PcA~-----~~~I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI  144 (230)
T d1leha1         100 FAPCAL-----GAVLNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGI  144 (230)
T ss_dssp             EEECSC-----SCCBSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTC
T ss_pred             eccccc-----ccccChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCc
Confidence            987753     67788888888874 47788887888876654 34444433

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=0.00026  Score=60.74  Aligned_cols=108  Identities=16%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             cccccccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 015895          157 LFVGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (398)
Q Consensus       157 ~~~g~~l~gktvGIIGlG~I-G~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~  235 (398)
                      ...|.+++||++.|||-+.| |+.+|..| ...|+.|...+...........+   ......+....+....+.+.+...
T Consensus        21 ~~~g~~l~GK~vvVIGrS~iVG~Pla~lL-~~~gaTVt~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lk~~~~   96 (171)
T d1edza1          21 LPEGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTRGES---LKLNKHHVEDLGEYSEDLLKKCSL   96 (171)
T ss_dssp             SCTTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEESCCC---SSCCCCEEEEEEECCHHHHHHHHH
T ss_pred             ccccCCCCCCEEEEECCccccHHHHHHHH-HHCCCEEEEeccccccccccccc---eeeeeeccccccccchhHHhhccc
Confidence            34677999999999998865 99999998 57899999887653221000000   000000000000001122677788


Q ss_pred             cCCEEEEccCCChhhhhh-ccHHHHhcCCCCcEEEEcCCCc
Q 015895          236 EADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~l-i~~~~~~~mk~gailIN~aRG~  275 (398)
                      ++|+|+.++|..    ++ +..   +..|+|+++||++-..
T Consensus        97 ~aDIvIsavG~p----~~~i~~---d~ik~GavvIDvGi~~  130 (171)
T d1edza1          97 DSDVVITGVPSE----NYKFPT---EYIKEGAVCINFACTK  130 (171)
T ss_dssp             HCSEEEECCCCT----TCCBCT---TTSCTTEEEEECSSSC
T ss_pred             cCCEEEEccCCC----ccccCh---hhcccCceEeeccccc
Confidence            999999999852    22 322   2358999999998653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.42  E-value=0.00044  Score=56.02  Aligned_cols=93  Identities=12%  Similarity=0.180  Sum_probs=59.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV~  241 (398)
                      ++|.|+|+|++|+.+|+.| ...|.+|++.|.++... +...+.+       +. ..-.....+   ++++ ++++|.++
T Consensus         1 M~IvI~G~G~~G~~la~~L-~~~g~~v~vid~d~~~~-~~~~~~~-------~~-~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEI-------DA-LVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHC-------SS-EEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCCcceecCChhhh-hhhhhhh-------hh-hhccCcccchhhhhhcChhhhhhhc
Confidence            5799999999999999998 78999999999987542 2211111       11 111111222   3333 68899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                      ..++..  ..+++-....+.+.+..++.-
T Consensus        71 ~~t~~d--~~N~~~~~~~k~~~~~~iI~~   97 (132)
T d1lssa_          71 AVTGKE--EVNLMSSLLAKSYGINKTIAR   97 (132)
T ss_dssp             ECCSCH--HHHHHHHHHHHHTTCCCEEEE
T ss_pred             ccCCcH--HHHHHHHHHHHHcCCceEEEE
Confidence            888753  334444555566666655543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.39  E-value=8.9e-05  Score=62.21  Aligned_cols=99  Identities=8%  Similarity=0.088  Sum_probs=60.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ++|+|.|||.|.||+.+|+.| ..-|.+|+++||+.... +.+.+.+..    .............+++.+...|+++.+
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L-~~~g~~V~v~dr~~~~a-~~l~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVL-TDSGIKVTVACRTLESA-KKLSAGVQH----STPISLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHH-HTTTCEEEEEESCHHHH-HHHHTTCTT----EEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECChHHH-HHHHhcccc----cccccccccchhhhHhhhhccceeEee
Confidence            478999999999999999998 47799999999998653 222111100    000000011112456778899999988


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +|....  ..+   .....+.+..+++.+.
T Consensus        75 ~~~~~~--~~~---~~~~~~~~~~~~~~~~   99 (182)
T d1e5qa1          75 IPYTFH--ATV---IKSAIRQKKHVVTTSY   99 (182)
T ss_dssp             SCGGGH--HHH---HHHHHHHTCEEECSSC
T ss_pred             ccchhh--hHH---HHHHHhhccceeeccc
Confidence            885322  111   2233345566776653

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.32  E-value=0.00043  Score=65.58  Aligned_cols=98  Identities=20%  Similarity=0.275  Sum_probs=70.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      -++++|||.|..++.-++.+..-++. +|.+||+++... +++.+.    +..  .....+..+.+++++++.||+|+.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~-~~~~~~----l~~--~~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIAN----LKE--YSGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHH----HTT--CTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHH-HHHHHh----hhh--ccCCCceecCCHHHHHhcCCceeec
Confidence            35899999999999988876556664 899999987643 222222    111  1223345577999999999999998


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ++. +.+.-+|..   +.+|+|+.+..++.
T Consensus       201 Tas-~s~~Pv~~~---~~l~pG~hI~aiGs  226 (340)
T d1x7da_         201 TAD-KAYATIITP---DMLEPGMHLNAVGG  226 (340)
T ss_dssp             CCC-SSEEEEECG---GGCCTTCEEEECSC
T ss_pred             ccc-CCCCcccch---hhcCCCCEEeeccc
Confidence            863 445566764   46799999988764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.29  E-value=0.00076  Score=56.09  Aligned_cols=109  Identities=15%  Similarity=0.245  Sum_probs=62.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ..++|+|||.|.+|..+|..|+. ++.-++..||+........-.+...... ..+  .. .....+.++ ++.||+|++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~-~~~--~~-~~~~~d~~~-~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-FTA--PK-KIYSGEYSD-CKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-GSC--CC-EEEECCGGG-GTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcccc-ccC--Cc-eEeeccHHH-hccccEEEE
Confidence            46799999999999999988753 4456999999876432111111111101 111  11 112235555 589999999


Q ss_pred             ccCCC--h-hhh--------hhcc--HHHHhcCCCCcEEEEcCCCchhcH
Q 015895          243 HPVLD--K-TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       243 ~~Plt--~-~T~--------~li~--~~~~~~mk~gailIN~aRG~~vde  279 (398)
                      +....  + +++        .++.  .+.+..-.+.+++|+++-  ++|.
T Consensus        79 tag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN--Pvdv  126 (146)
T d1ez4a1          79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN--PVDI  126 (146)
T ss_dssp             CCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHH
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC--ccHH
Confidence            76421  1 111        1111  123555678889999875  4444

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.26  E-value=0.00095  Score=55.54  Aligned_cols=113  Identities=19%  Similarity=0.310  Sum_probs=63.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      -.+++|+|||.|.+|+.+|..++. ++.-++..||...........+....  .......... ...+. +.++.||+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~--~~~~~~~~~~-~~~d~-~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG--KVFAPKPVDI-WHGDY-DDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH--TTSSSSCCEE-EECCG-GGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhC--ccccCCCeEE-EECCH-HHhccceeEE
Confidence            457799999999999999987743 45558999998765421111111100  0000011111 12233 5578999999


Q ss_pred             EccCCCh---hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          242 LHPVLDK---TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       242 l~~Plt~---~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      ++.....   +++ .++  |       .+.+.+..|.+++|+++-  ++|.-.
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN--Pvd~~t  130 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDILT  130 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHHH
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC--ccHHHH
Confidence            8754322   121 111  1       123455567889999865  455433

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=0.00095  Score=54.99  Aligned_cols=107  Identities=18%  Similarity=0.295  Sum_probs=62.0

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|+.+|-.++ +++.-++..||...........+...... ...  .... ...+ .+.++.||+|+++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~-~~~--~~~~-~~~~-~~~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FTR--RANI-YAGD-YADLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSC--CCEE-EECC-GGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc-ccc--cccc-cCCc-HHHhcCCCEEEEec
Confidence            57999999999999997654 36667999999876542222122111100 011  1111 1223 34579999999885


Q ss_pred             CC--Ch-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcH
Q 015895          245 VL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDE  279 (398)
Q Consensus       245 Pl--t~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde  279 (398)
                      ..  .+ +++ .++  |       .+.+....|++++++++-  ++|.
T Consensus        76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN--Pvd~  121 (140)
T d1a5za1          76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN--PVDV  121 (140)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHH
T ss_pred             ccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC--cHHH
Confidence            32  22 122 222  1       134555678999999875  3444

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.23  E-value=0.0011  Score=55.16  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=59.9

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      |+|+|||.|.+|..+|-.++ +++.-++..||.........-.+...... ... ..... ...+.+ .++.||+|+++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~-~~~-~~~~~-~~~d~~-~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA-NLE-AHGNI-VINDWA-ALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSS-SCCEE-EESCGG-GGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccc-ccC-Cccce-eccCHH-HhccccEEEEec
Confidence            78999999999999998764 24455899999876542221112111100 011 11111 123444 479999999986


Q ss_pred             CCCh-------hhh--------hhcc--HHHHhcCCCCcEEEEcCC
Q 015895          245 VLDK-------TTY--------HLIN--KERLATMKKEAILVNCSR  273 (398)
Q Consensus       245 Plt~-------~T~--------~li~--~~~~~~mk~gailIN~aR  273 (398)
                      ....       .++        .++.  .+.+....|.+++|+++-
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence            6422       121        1121  124455678999999876

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00039  Score=59.04  Aligned_cols=76  Identities=20%  Similarity=0.195  Sum_probs=51.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhcCCE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el-l~~aDi  239 (398)
                      .++.||+|.|+|.|..+++++..| ...|++|..++|+.+.. +...+.+    ...+.    .. ..++++. ...+|+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al-~~~g~~i~I~nRt~~ka-~~l~~~~----~~~~~----~~-~~~~~~~~~~~~dl   82 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLF----AHTGS----IQ-ALSMDELEGHEFDL   82 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHT----GGGSS----EE-ECCSGGGTTCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHh-cccceEEEeccchHHHH-HHHHHHH----hhccc----cc-ccccccccccccce
Confidence            578999999999999999999987 57899999999988643 2222211    11110    11 1222222 467899


Q ss_pred             EEEccCCC
Q 015895          240 ISLHPVLD  247 (398)
Q Consensus       240 V~l~~Plt  247 (398)
                      |+.++|..
T Consensus        83 iIN~Tp~G   90 (170)
T d1nyta1          83 IINATSSG   90 (170)
T ss_dssp             EEECCSCG
T ss_pred             eecccccC
Confidence            99999964

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.0014  Score=58.79  Aligned_cols=118  Identities=18%  Similarity=0.195  Sum_probs=76.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh--------h--hHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--------A--TRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      .++.|+|+.|=|+|++|+.+|+.|.+.+|++|++.+.+.        -  ..+..+.+..+      ...........+.
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~------~~~~~~~~~~~~~  100 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG------TVVTYPKGERITN  100 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSS------CSTTCSSCEEECH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhc------ceeccccceeecc
Confidence            579999999999999999999997557899998765321        0  11222111110      0000011122356


Q ss_pred             HHHhh-cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          231 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       231 ~ell~-~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++++. .||+++-|.     ..+.|+.+...+++-. +++-.+-+.+-. ++ .+.|.+..|.
T Consensus       101 ~~~~~~~~DI~~PcA-----~~~~I~~~~a~~l~~~-~I~e~AN~p~t~-~a-~~~L~~rgI~  155 (234)
T d1b26a1         101 EELLELDVDILVPAA-----LEGAIHAGNAERIKAK-AVVEGANGPTTP-EA-DEILSRRGIL  155 (234)
T ss_dssp             HHHHTSCCSEEEECS-----CTTCBCHHHHTTCCCS-EEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccccccccceeecch-----hcccccHHHHHHhhhc-eEeecCCCCCCH-HH-HHHHHHCCeE
Confidence            77775 999998664     3678999999999864 788888887643 44 3566665543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.16  E-value=0.0019  Score=55.02  Aligned_cols=113  Identities=16%  Similarity=0.123  Sum_probs=65.4

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEEEEc
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV~l~  243 (398)
                      ++||||+|.||+..++.+...-+++|. ++|++.... +.+.+.+       +. +.....+.+++++++  +.|+|+++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~-~~~~~~~-------~~-~~~~~~~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATAN-------NY-PESTKIHGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT-------TC-CTTCEEESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCcccc-ccchhcc-------cc-ccceeecCcHHHhhhccccceeeec
Confidence            799999999999999887433377877 568876532 2221111       11 111223468999984  57899999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEE-Ec-CCCchhcHHHHHHHHhcCCccE
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILV-NC-SRGPVIDEVALVEHLKQNPMFR  293 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailI-N~-aRG~~vde~aL~~aL~~g~i~g  293 (398)
                      +|......     -....++.|.-++ .- .--.+-+.+.|.+..++.++.-
T Consensus        74 tp~~~h~~-----~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          74 LPTSLHVE-----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             CCGGGHHH-----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             ccchhhcc-----hhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence            99532222     1233344444333 21 1123445566778777766543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00035  Score=60.01  Aligned_cols=86  Identities=15%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       160 g~~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      |.+++||++.|+|.|..|++++..| ...|. ++..++|+.+..  ...+.+.+....... .....+....++.+.+..
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al-~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   90 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQG-AIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCV-VTVTDLADQQAFAEALAS   90 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCE-EEEEETTCHHHHHHHHHT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHH-hhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcc-eEeeecccccchhhhhcc
Confidence            3579999999999999999999887 45676 788999886532  222222111100000 000001111235566789


Q ss_pred             CCEEEEccCCC
Q 015895          237 ADVISLHPVLD  247 (398)
Q Consensus       237 aDiV~l~~Plt  247 (398)
                      +|+|+.++|..
T Consensus        91 ~diiIN~Tp~G  101 (182)
T d1vi2a1          91 ADILTNGTKVG  101 (182)
T ss_dssp             CSEEEECSSTT
T ss_pred             cceeccccCCc
Confidence            99999999964

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.15  E-value=0.0022  Score=53.63  Aligned_cols=108  Identities=16%  Similarity=0.225  Sum_probs=62.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      +.++|+|||.|.+|+.+|..++ ..+ .+++.||...........+.... ....+ .........+.++.++.||+|++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~-~~~~~el~L~D~~~~~~~g~a~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMPEGKALDLSHV-TSVVD-TNVSVRAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHHHHHH-HHHTT-CCCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHH-hCCCceEEEEEeccccchhHHHHHhhh-ccccC-CeeEEeccCchhhhhcCCCeEEE
Confidence            3568999999999999997763 333 38999998764321111111000 00011 11111122456788899999999


Q ss_pred             ccCC--Ch------hhhh-hc--c-------HHHHhcCCCCcEEEEcCCC
Q 015895          243 HPVL--DK------TTYH-LI--N-------KERLATMKKEAILVNCSRG  274 (398)
Q Consensus       243 ~~Pl--t~------~T~~-li--~-------~~~~~~mk~gailIN~aRG  274 (398)
                      +...  .+      .|+. ++  |       .+.+....+.+++++++-.
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            8742  11      1331 11  1       1234556788999998763

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.14  E-value=0.0014  Score=54.04  Aligned_cols=104  Identities=16%  Similarity=0.227  Sum_probs=55.9

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|+.+|-.++ +++.-++..||.........-.+     +.+.............-.+.++.||+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D-----l~~~~~~~~~~~~~~~~~~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD-----INHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH-----HTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee-----eccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence            47999999999999997764 24455899999876532111111     1111111001111122234578999999984


Q ss_pred             CCCh---hhh-hhc--c-------HHHHhcCCCCcEEEEcCCC
Q 015895          245 VLDK---TTY-HLI--N-------KERLATMKKEAILVNCSRG  274 (398)
Q Consensus       245 Plt~---~T~-~li--~-------~~~~~~mk~gailIN~aRG  274 (398)
                      ....   +++ .++  |       .+.+....|.+++|+++..
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence            3221   222 111  1       1234455788899998763

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.12  E-value=0.0011  Score=57.02  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=52.5

Q ss_pred             cccccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       159 ~g~~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      .|.+|+||++.|.| -|.||+.+|+.+ ...|++|+..+|+.... +...+.+..... ............++++++.+.
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~l-a~~G~~V~~~~r~~~~~-~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~i   93 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKA-QAAADSVNKRFK-VNVTAAETADDASRAEAVKGA   93 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHHHHHHT-CCCEEEECCSHHHHHHHTTTC
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHH-HhhccchhhcccchHHH-HHHHHHHHhccc-hhhhhhhcccHHHHHHHhcCc
Confidence            34689999999999 699999999998 58999999999987542 211111110000 000001111123456667788


Q ss_pred             CEEEEccC
Q 015895          238 DVISLHPV  245 (398)
Q Consensus       238 DiV~l~~P  245 (398)
                      |+|+.+.+
T Consensus        94 Dilin~Ag  101 (191)
T d1luaa1          94 HFVFTAGA  101 (191)
T ss_dssp             SEEEECCC
T ss_pred             CeeeecCc
Confidence            87776654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.12  E-value=0.00046  Score=62.31  Aligned_cols=122  Identities=17%  Similarity=0.197  Sum_probs=73.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~  231 (398)
                      +|.|+||.|=|+|++|+.+|+.| ...|++|++.+....          +.+.++.+..+...........+.....+.+
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L-~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            69999999999999999999998 799999987664321          1111100000000000000000011122334


Q ss_pred             HHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          232 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       232 ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      +++ ..||+++-|.-     .+.|+.+...+++- .+++-.+-+.+ ..++ .+.|.+..|.
T Consensus       107 ~i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         107 AIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hhccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            444 48999998764     56788888888874 47777888886 4555 3667766554

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.04  E-value=0.0013  Score=60.75  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=72.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh----------hhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      .+|.|+||.|=|+|++|+.+|+.| ...|++|++.+.+.          .+.+..+.+..+.      ........ .+.
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L-~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~------~~~~~~~~-~~~  103 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYL-HRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGT------ILGFPKAK-IYE  103 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSS------STTCTTSC-BCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEccchhhccccccchHHHHHHHHHcCC------eecccccc-cCC
Confidence            479999999999999999999998 68999998775321          1122222211110      00000001 122


Q ss_pred             HHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       231 ~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++++ ..||+++-|.     +.+.|+.+...+++-. +++-.|-|++- .+| .+.|.+..+.
T Consensus       104 ~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~ak-~I~EgAN~P~t-~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         104 GSILEVDCDILIPAA-----SEKQLTKSNAPRVKAK-IIAEGANGPTT-PQA-DKIFLERNIM  158 (293)
T ss_dssp             SCGGGCCCSEEEECS-----SSSCBCTTTGGGCCCS-EEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             cccccCCccEEeecc-----ccccccHHHHHHHhhC-EEeccCCCCCC-cch-HHHHHHCCCE
Confidence            3344 4899998664     3677888888888654 77888888864 444 3556655543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0023  Score=53.79  Aligned_cols=95  Identities=19%  Similarity=0.141  Sum_probs=61.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh--------
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--------  234 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell--------  234 (398)
                      .|.+|.|+|.|.||...+..+ +.+|+ +|++.|++..+..  +.       ++.|..........+..+..        
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a-~~~G~~~Vi~~d~~~~rl~--~a-------~~~Ga~~~~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLS--KA-------KEIGADLVLQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHH--HH-------HHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHHH-HHcCCceEEeccCCHHHHH--HH-------HHhCCcccccccccccccccccccccCC
Confidence            466899999999999999986 89998 8999999876531  11       12232211111123343332        


Q ss_pred             hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       235 ~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ...|+|+-+++. +.+    -+..++.+++|..++.++-
T Consensus        96 ~g~Dvvid~~G~-~~~----~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECTGA-EAS----IQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEeccCC-chh----HHHHHHHhcCCCEEEEEec
Confidence            257998888874 222    2456777888888877754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.01  E-value=0.0015  Score=53.72  Aligned_cols=111  Identities=19%  Similarity=0.229  Sum_probs=62.0

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|+.+|..++. ++.-++..||...........+...... .... ...... .+..+.+++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~-~~~~-~~~i~~-~~~~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP-VGLF-DTKVTG-SNDYADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH-HHTC-CCEEEE-ESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc-hhcc-cceEEe-cCCHHHhcCCeEEEEEE
Confidence            479999999999999988742 3335999999876542211111111000 0011 111111 23345679999999885


Q ss_pred             --CCCh-hhhh-hc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          245 --VLDK-TTYH-LI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       245 --Plt~-~T~~-li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                        |..+ +++. ++  |       .+.+....|.+++++++-  ++|.-.
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN--Pvd~~~  125 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIMT  125 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHHH
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC--ChHHHH
Confidence              4333 2221 11  1       123444568889999876  455443

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.00  E-value=0.0011  Score=56.15  Aligned_cols=83  Identities=16%  Similarity=0.235  Sum_probs=54.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|||||+|.||+..++.+ +.. +.+++ ++|++....                 .........+.++++.+.|+|+++
T Consensus         4 irvgiiG~G~ig~~~~~~l-~~~~~~elvav~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~D~Vvi~   65 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLI-AKQPDMDLVGIFSRRATLD-----------------TKTPVFDVADVDKHADDVDVLFLC   65 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEEESSSCCS-----------------SSSCEEEGGGGGGTTTTCSEEEEC
T ss_pred             ceEEEECChHHHHHHHHHH-HhCCCcEEEEEEecccccc-----------------cccccccchhhhhhccccceEEEe
Confidence            4799999999999999998 554 67765 456554221                 111222345677788899999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~  271 (398)
                      +|.....     +-....++.|.-+|.+
T Consensus        66 tp~~~h~-----~~a~~aL~aG~~vv~~   88 (170)
T d1f06a1          66 MGSATDI-----PEQAPKFAQFACTVDT   88 (170)
T ss_dssp             SCTTTHH-----HHHHHHHTTTSEEECC
T ss_pred             CCCcccH-----HHHHHHHHCCCcEEEe
Confidence            9964321     2233445667666644

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00028  Score=56.17  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ...+.+|||+|-|-.|+.+|... +.+|.+++++|+++..
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA-~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIEC-QRLGVEVIAVDRYADA   46 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHH-HTTTCEEEEEESSTTC
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHH-HHCCCEEEEEcCCCCC
Confidence            34567899999999999999984 8999999999998754

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.93  E-value=0.0064  Score=54.42  Aligned_cols=116  Identities=24%  Similarity=0.350  Sum_probs=72.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhhhhhhcCCCCc-cccccCCH
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPV-TWKRASSM  230 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sl  230 (398)
                      .|.|+||.|-|+|++|+.+|+.|++.+|++|++......          ..+.++....      ...... +.. ..+.
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~------~~~~~~~~~~-~~~~  101 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEH------GSVKDFPGAT-NITN  101 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHH------SSSTTCTTSE-EECH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhc------cccccCCCCe-eecc
Confidence            499999999999999999999875578999887643210          1111111110      010000 111 2245


Q ss_pred             HHHh-hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       231 ~ell-~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      ++++ ..||+++-|.-     .+.|+.+...+++- .+++-.+-+.+-. ++ .+.|.+..|.
T Consensus       102 ~~i~~~~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI~  156 (239)
T d1gtma1         102 EELLELEVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGIL  156 (239)
T ss_dssp             HHHHHSCCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             cccccccccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence            5654 68999987764     57788888888865 4777888887644 34 3556655443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00038  Score=58.77  Aligned_cols=97  Identities=18%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc-cccCC-HHHHhhcCCEEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASS-MDEVLREADVIS  241 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s-l~ell~~aDiV~  241 (398)
                      .|.+|.|+|.|.+|...++.+ +.+|++|++.|+++.+. + +       .++.|...... ....+ .+......|+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~a-k~~G~~vi~~~~~~~k~-~-~-------a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKR-E-D-------AMKMGADHYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTH-H-H-------HHHHTCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHh-hhccccccccccchhHH-H-H-------hhccCCcEEeeccchHHHHHhhhcccceEE
Confidence            578999999999999999975 89999999999987542 1 1       11223221111 11112 334456678888


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .++.....   .--...++.++++..++.++-
T Consensus        97 ~~~~~~~~---~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          97 VCASSLTD---IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             ECCSCSTT---CCTTTGGGGEEEEEEEEECCC
T ss_pred             EEecCCcc---chHHHHHHHhhccceEEEecc
Confidence            87664221   111345777888888888753

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.90  E-value=0.001  Score=62.33  Aligned_cols=92  Identities=16%  Similarity=0.231  Sum_probs=66.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      +++||||.|..++.-++.++..+.. +|.+|+|+.... +.+.+.    +...+     .....+.++.+..||+|+.++
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~-~~~~~~----~~~~~-----~~~~~~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSY----CEDRG-----ISASVQPAEEASRCDVLVTTT  195 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHH----HHHTT-----CCEEECCHHHHTSSSEEEECC
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHH-HHHHHH----HHhcC-----CccccchhhhhccccEEEEec
Confidence            5899999999999999887656665 899999987543 333222    22222     112345678889999999998


Q ss_pred             CCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       245 Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |   .+.-++..+   .+|+|+.++.++.
T Consensus       196 ~---s~~P~~~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         196 P---SRKPVVKAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             C---CSSCCBCGG---GCCTTCEEEECSC
T ss_pred             c---Ccccccchh---hcCCCCeEeecCC
Confidence            7   456667543   5799999999875

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.88  E-value=0.0047  Score=51.58  Aligned_cols=110  Identities=15%  Similarity=0.197  Sum_probs=62.9

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-cCCEEEEc
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLH  243 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-~aDiV~l~  243 (398)
                      .++||||+|.+|+. ....+.+.-+.++.++|+++... +.+.+.+       +..    ..+.+.+++++ +.|+|+++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~-------~~~----~~~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVS----ATCTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCC----CCCSSTTGGGGGCCSEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHhc-------ccc----cccccHHHhcccccceeccc
Confidence            47999999999987 45665333367888999876542 2222221       111    12346667664 67999999


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEc-CCCchhcHHHHHHHHhcCCc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~-aRG~~vde~aL~~aL~~g~i  291 (398)
                      +|..  +.--+-...+.. +.. +++.- ---.+-+.+.|.++.++.++
T Consensus        70 tp~~--~H~~~~~~al~~-gk~-V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          70 AATD--VHSTLAAFFLHL-GIP-TFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             SCGG--GHHHHHHHHHHT-TCC-EEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             cccc--cccccccccccc-ccc-cccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            9953  332222333332 222 44432 12234555668887776554

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00037  Score=57.80  Aligned_cols=46  Identities=15%  Similarity=0.158  Sum_probs=39.1

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH
Q 015895          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (398)
Q Consensus       159 ~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~  205 (398)
                      ...+|.||++.|||.|.+|.+-|+.| ..+|++|.+++|...+.+..
T Consensus         7 l~~~l~gkrvLViGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~   52 (150)
T d1kyqa1           7 LAHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLHKSIIP   52 (150)
T ss_dssp             EEECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEECTTHHH
T ss_pred             hheeeCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHH
Confidence            34579999999999999999999998 68999999998876655444

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.85  E-value=0.0014  Score=59.11  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=58.2

Q ss_pred             ccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       224 ~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      .....+..|++++||+|++++|..+.+..++ ++....+++|++++|++.........+.+.+++..+.
T Consensus       129 v~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         129 LKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             CEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             CEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            3345789999999999999999777777887 6788999999999999999988888899999876544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.0017  Score=55.23  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=33.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~  201 (398)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.|+++..
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~a-k~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHH
T ss_pred             CCCCEEEEECCCccchhheecc-ccccccccccccccccc
Confidence            3588999999999999999985 89998 89999997754

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.84  E-value=0.006  Score=50.06  Aligned_cols=111  Identities=19%  Similarity=0.288  Sum_probs=60.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~P  245 (398)
                      ++|+|||.|.+|+.+|-.++..--.+++.+|...........+........ . .........+.++ +++||+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~-~-~~~~i~~~~d~~~-~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIE-G-FDVRVTGTNNYAD-TANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHH-T-CCCCEEEESCGGG-GTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccccc-C-CCCEEEecCcHHH-hcCCCEEEEeee
Confidence            589999999999999987653222489999987654222212211110000 1 0111222234555 689999999874


Q ss_pred             C--Ch-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          246 L--DK-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       246 l--t~-~T~-~li--~~-------~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      .  .+ +++ .++  |.       +.+.+..|.++++.++.  ++|.-.
T Consensus        79 ~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN--PvDv~t  125 (142)
T d1uxja1          79 APRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN--PLDAMT  125 (142)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS--SHHHHH
T ss_pred             ccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC--chHHHH
Confidence            3  22 222 211  11       23444567889999765  344433

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0016  Score=54.42  Aligned_cols=106  Identities=16%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      .+|||||+|.+|+. ....+ +.. +.+++ ++|++.... ..+.+.|       +     .....++++++++.|+|++
T Consensus         2 iri~iIG~G~~g~~~~~~~l-~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~l~~~~D~V~I   67 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVL-AAASDWTLQGAWSPTRAKA-LPICESW-------R-----IPYADSLSSLAASCDAVFV   67 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHH-HSCSSEEEEEEECSSCTTH-HHHHHHH-------T-----CCBCSSHHHHHTTCSEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHH-HhCCCcEEEEEEechhHhh-hhhhhcc-------c-----ccccccchhhhhhcccccc
Confidence            37999999999987 45555 444 67765 678876542 2222222       1     1234678999999999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEE--cCCCchhcHHHHHHHHhcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVN--CSRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN--~aRG~~vde~aL~~aL~~g~  290 (398)
                      ++|..  ++.-+-...+.. +. .+++.  .+. .+-+.+.|.++.++.+
T Consensus        68 ~tp~~--~h~~~~~~al~~-gk-~V~~EKPla~-~~~e~~~l~~~a~~~~  112 (164)
T d1tlta1          68 HSSTA--SHFDVVSTLLNA-GV-HVCVDKPLAE-NLRDAERLVELAARKK  112 (164)
T ss_dssp             CSCTT--HHHHHHHHHHHT-TC-EEEEESSSCS-SHHHHHHHHHHHHHTT
T ss_pred             cccch--hccccccccccc-cc-eeeccccccC-CHHHHHHHHHHHHHcC
Confidence            99953  322222223322 21 24443  122 3445555666666544

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.81  E-value=0.0025  Score=53.43  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcC-CcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-----hcC
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~f-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell-----~~a  237 (398)
                      .++||||.|.||+. +.+.+ +.+ ..++.+ .+++.......+.+.       .+ .+  + ...++++++     .+.
T Consensus         5 irvaIIGaG~ig~~~~~~~l-~~~~~~el~avas~~~~~~~~~~a~~-------~~-i~--~-~~~~~d~l~~~~~~~~i   72 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQR-------MG-VT--T-TYAGVEGLIKLPEFADI   72 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHCSSEEEEEEECSCTTCHHHHHHHH-------TT-CC--E-ESSHHHHHHHSGGGGGE
T ss_pred             cEEEEEcCcHHHHHHHHHHH-hhCCcceEEEEEecchhccchhhhhh-------cC-Cc--c-cccceeeeeeccccccc
Confidence            47999999999996 56766 555 446554 466554221111111       12 11  1 123355543     468


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|++++|...+..   .+..+...+.|.++||-+.
T Consensus        73 DiVf~ATpag~h~~---~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          73 DFVFDATSASAHVQ---NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             EEEEECSCHHHHHH---HHHHHHHHCTTCEEEECST
T ss_pred             CEEEEcCCchhHHH---hHHHHHHHHcCCEEEEccc
Confidence            99999999432322   2345666899999999875

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.72  E-value=0.0038  Score=50.70  Aligned_cols=100  Identities=19%  Similarity=0.148  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHH-HHHHhhhhhhhhhcCCCCccccccCCH
Q 015895          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVTAYGQFLKANGEQPVTWKRASSM  230 (398)
Q Consensus       162 ~l~gktvGIIGl----------G~IG~~vA~~la~~fG~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sl  230 (398)
                      .+.+++|||+|+          +.-...+++.| ...|++|.+|||..+... ......+   .. ............++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L-~~~g~~V~~~DP~v~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~   84 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEY---IE-SKIPHVSSLLVSDL   84 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHH---HH-HTSHHHHTTBCSCH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHH-hhhhccccccCCCCCHHHHhhhhhhh---hh-hccccccceeehhh
Confidence            467899999998          46778899998 689999999999764321 0000000   00 00000011234689


Q ss_pred             HHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       231 ~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +++++.||+|+++++- ++-     .+....++++.+++|+-
T Consensus        85 ~e~i~~~D~ivi~t~h-~~f-----~~l~~~~~~~~~I~D~~  120 (136)
T d1mv8a3          85 DEVVASSDVLVLGNGD-ELF-----VDLVNKTPSGKKLVDLV  120 (136)
T ss_dssp             HHHHHHCSEEEECSCC-GGG-----HHHHHSCCTTCEEEESS
T ss_pred             hhhhhhceEEEEEeCC-HHH-----HHHHHHhcCCCEEEECC
Confidence            9999999999999984 232     23455677888999973

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.69  E-value=0.0012  Score=56.73  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=45.7

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhh----hhc-CCCCccccccCCHHHHhhcCCEE
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFL----KAN-GEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      +|||.|||+||+.++|.+...=+++|++. |+.+......+.. ++...    ... .....+......+.++++++|+|
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHR-RGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHH-TTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcc-cCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            69999999999999999753446888775 4444332221111 11000    000 00000011123678888899999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      +-|+|.-
T Consensus        82 iecTG~f   88 (178)
T d1b7go1          82 VDTTPNG   88 (178)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999863

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.68  E-value=0.0041  Score=52.34  Aligned_cols=110  Identities=14%  Similarity=0.231  Sum_probs=63.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ..+..++|+|||.|++|+.+|-.++. ++--++..||...........+...... ... .. ......+. +-+++||+
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~-~~~-~~-~~~~~~d~-~~~~~adi   91 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSL-FLQ-TP-KIVADKDY-SVTANSKI   91 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG-GCC-CS-EEEECSSG-GGGTTCSE
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcccc-ccC-CC-eEEeccch-hhcccccE
Confidence            34677899999999999999988742 3444899999876543222222111110 011 11 11122344 44789999


Q ss_pred             EEEccCC--Ch-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCC
Q 015895          240 ISLHPVL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSRG  274 (398)
Q Consensus       240 V~l~~Pl--t~-~T~-~li--~-------~~~~~~mk~gailIN~aRG  274 (398)
                      |++....  .+ +++ .++  |       ...+....+.+++|+++..
T Consensus        92 VVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          92 VVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             EEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            9987543  22 233 122  1       1234445788899998763

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.55  E-value=0.0012  Score=54.93  Aligned_cols=35  Identities=14%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             CeEEEE-ecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       166 ktvGII-GlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +||+|| |.|.||+.+|++| ...|++|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~l-a~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            589999 8999999999998 5899999999998754

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.021  Score=48.14  Aligned_cols=108  Identities=14%  Similarity=0.182  Sum_probs=60.7

Q ss_pred             CeEEEEecChhHHHH-HHHHHhcCC--cEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCE
Q 015895          166 QTVGVIGAGRIGSAY-ARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~v-A~~la~~fG--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDi  239 (398)
                      .++||||+|.+|+.+ +..+ +.++  .++. ++|++.... +.+.+.+       +.    ...+.+++|+++  +.|+
T Consensus         4 irigiIG~G~~g~~~h~~~l-~~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~~----~~~~~~~~ell~~~~id~   70 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMV-------GN----PAVFDSYEELLESGLVDA   70 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHH-------SS----CEEESCHHHHHHSSCCSE
T ss_pred             cEEEEEcCCHHHHHHHHHHH-HhCCCCeEEEEEEeccHhhh-hhhhccc-------cc----cceeeeeeccccccccce
Confidence            379999999999974 6666 4543  4665 678877542 2222222       11    112468999986  4788


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEc-CCCchhcHHHHHHHHhcCC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP  290 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~-aRG~~vde~aL~~aL~~g~  290 (398)
                      |++++|..  +..-+-...++. +. .+++.- ---.+-+.++|.+..++.+
T Consensus        71 v~I~tp~~--~h~~~~~~al~~-gk-~V~~EKPl~~~~~e~~~l~~~~~~~~  118 (181)
T d1zh8a1          71 VDLTLPVE--LNLPFIEKALRK-GV-HVICEKPISTDVETGKKVVELSEKSE  118 (181)
T ss_dssp             EEECCCGG--GHHHHHHHHHHT-TC-EEEEESSSSSSHHHHHHHHHHHHHCS
T ss_pred             eecccccc--cccccccccccc-ch-hhhcCCCCcCCHHHHHHHHHHHHHhC
Confidence            99999953  322222233332 11 234332 1123445556777766544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.50  E-value=0.0075  Score=50.15  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=33.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|.+|.|+|.|.||...++.+ +.+|++|+++|++..+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~~~r   62 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRR   62 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEEcccccchhhHhhH-hhhcccccccchHHHH
Confidence            566899999999999999985 8999999999998765

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.43  E-value=0.0093  Score=49.43  Aligned_cols=106  Identities=16%  Similarity=0.252  Sum_probs=58.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      ..+|+|||.|.+|+.+|-.++. .+ .++..||.........-.+....... .+. ...... .+..+.++.||+|+++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~-~~~-~~~v~~-~~~~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVM-AYS-NCKVSG-SNTYDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHH-HTC-CCCEEE-ECCGGGGTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccc-cCC-CcEEEe-cccccccCCCcEEEEe
Confidence            3589999999999999977643 33 48999998764321111111100000 011 111111 2334557899999988


Q ss_pred             cCCChh---h-----h-hhc--cHH-------HHhcCCCCcEEEEcCCC
Q 015895          244 PVLDKT---T-----Y-HLI--NKE-------RLATMKKEAILVNCSRG  274 (398)
Q Consensus       244 ~Plt~~---T-----~-~li--~~~-------~~~~mk~gailIN~aRG  274 (398)
                      .-....   +     | .++  |.+       .+....|++++++++..
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            653211   1     2 111  222       24445689999998774

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.41  E-value=0.0012  Score=56.18  Aligned_cols=81  Identities=19%  Similarity=0.140  Sum_probs=52.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .+++||++.|+|.|..+++++..| ...| +|.+++|+.... +.+.+.+.....  . .........+++..+..+|+|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL-~~~~-~i~I~nR~~~ka-~~l~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~dli   87 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKA-EALAKEIAEKLN--K-KFGEEVKFSGLDVDLDGVDII   87 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHH-HHHHHHHHHHHT--C-CHHHHEEEECTTCCCTTCCEE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-cccc-ceeeehhhhhHH-HHHHHHHHHhhc--h-hhhhhhhhhhhhhccchhhhh
Confidence            469999999999999999999887 5777 999999987642 222211110000  0 000011123455567889999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      +.++|..
T Consensus        88 In~tp~g   94 (177)
T d1nvta1          88 INATPIG   94 (177)
T ss_dssp             EECSCTT
T ss_pred             ccCCccc
Confidence            9999963

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.41  E-value=0.016  Score=48.68  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=46.4

Q ss_pred             CeEEEEecChhH--HHHHHHHHh--cCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIGAGRIG--SAYARMMVE--GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG--~~vA~~la~--~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++|.|||.|++|  ..++..++.  .|. .++..+|........+..+............+.......+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            479999999876  445444321  232 589999987654211112211111111111222233446788889999999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999864

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.40  E-value=0.021  Score=46.73  Aligned_cols=111  Identities=14%  Similarity=0.163  Sum_probs=62.6

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      ++|+|||.|.+|+.+|-.++. ++--++..||.........-.+.-. ........ .......+. |.+++||+|++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~-~~~~~~~~-~~i~~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH-AAAGIDKY-PKIVGGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHH-HHHTTTCC-CEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhh-hccccCCC-CccccCCCH-HHhccccEEEEec
Confidence            589999999999999987642 4445899999876542111111100 00001111 112222344 5679999999876


Q ss_pred             C--CChh-hh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          245 V--LDKT-TY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       245 P--lt~~-T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      .  .++. ++ .++  |       .+.+....+.+++++++-  ++|.-.
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN--PvD~~t  125 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMT  125 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHH
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC--ChHHHH
Confidence            4  3331 11 121  1       124555677899999987  355444

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0015  Score=48.46  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      |||||+|-|-.|+.++.. ++.+|.+|+++||....
T Consensus         2 k~vgIlG~GQLgrMl~~A-a~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQA-GEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHH-HGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCEEEEEcCCCCC
Confidence            689999999999999998 48999999999997643

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.36  E-value=0.0033  Score=53.29  Aligned_cols=94  Identities=17%  Similarity=0.154  Sum_probs=57.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-Hhh-----c
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLR-----E  236 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e-ll~-----~  236 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+..  +.       ++.|..........++.+ +.+     .
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~a-k~~Ga~~Vi~~d~~~~r~~--~a-------~~lGa~~~i~~~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGA-KLRGAGRIIGVGSRPICVE--AA-------KFYGATDILNYKNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSCEEEECCCHHHHH--HH-------HHHTCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEEcCCcchhhhhhhh-hcccccccccccchhhhHH--HH-------HhhCccccccccchhHHHHHHHHhhccC
Confidence            477899999999999999985 89997 7999999875421  11       122321111111123322 222     2


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      .|+|+-+++.. ++   + .+.+..++++..++-++
T Consensus        97 ~D~vid~~g~~-~~---~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          97 VDRVIMAGGGS-ET---L-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEEEECSSCT-TH---H-HHHHHHEEEEEEEEECC
T ss_pred             cceEEEccCCH-HH---H-HHHHHHHhcCCEEEEEe
Confidence            68888777642 21   2 34566677777777765

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.32  E-value=0.0049  Score=54.19  Aligned_cols=72  Identities=13%  Similarity=0.165  Sum_probs=46.8

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCEE
Q 015895          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~-vA~~la~~f-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDiV  240 (398)
                      -+|||||+|.+|+. ++..+ +.. +++|+ ++|+++... +.+.+.|       +........+.+++|++.  +.|+|
T Consensus        34 iriaiIG~G~~~~~~~~~~~-~~~~~~~ivav~d~~~~~a-~~~~~~~-------~i~~~~~~~~~d~~ell~~~~iD~V  104 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGNAEKA-KIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAV  104 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHT-TTCSSEEEEEEECSCHHHH-HHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEE
T ss_pred             EEEEEEcCcHHHHHHHHHHH-HhCCCceEEEEecCCHHHH-HHHHHhh-------ccccccccccCchhhhcccccceee
Confidence            47999999999985 55655 444 67776 778877542 2222222       222222233568889885  57899


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      ++++|.
T Consensus       105 ~I~tp~  110 (221)
T d1h6da1         105 YIILPN  110 (221)
T ss_dssp             EECSCG
T ss_pred             eeccch
Confidence            999994

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.012  Score=50.28  Aligned_cols=73  Identities=10%  Similarity=0.061  Sum_probs=49.2

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEE
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV  240 (398)
                      ..|+|.|+| .|.||+.++++| ..-|.+|.+++|++++....         ...+..-.  ......+++++++.+|+|
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~L-l~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEEcChhhcccc---------cccccccccccccchhhHHHHhcCCCEE
Confidence            457899999 699999999997 57799999999887542110         00010000  011123567789999999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      +.++..
T Consensus        72 i~~~g~   77 (205)
T d1hdoa_          72 IVLLGT   77 (205)
T ss_dssp             EECCCC
T ss_pred             EEEecc
Confidence            988764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.0009  Score=56.93  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=49.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ..+.||++.|+|.|..+++++..|. ..+.+|.+++|+.+.. +...+.+.    ...  .  .......+..+..+|+|
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~-~~~~~i~I~nR~~~~a-~~l~~~~~----~~~--~--~~~~~~~~~~~~~~dii   83 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLL-QAQQNIVLANRTFSKT-KELAERFQ----PYG--N--IQAVSMDSIPLQTYDLV   83 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHH-HTTCEEEEEESSHHHH-HHHHHHHG----GGS--C--EEEEEGGGCCCSCCSEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHc-ccCceeeeccchHHHH-HHHHHHHh----hcc--c--cchhhhcccccccccee
Confidence            4689999999999999999999874 5668999999997542 22222211    111  0  00111111125788999


Q ss_pred             EEccCCC
Q 015895          241 SLHPVLD  247 (398)
Q Consensus       241 ~l~~Plt  247 (398)
                      +.++|..
T Consensus        84 IN~tp~g   90 (171)
T d1p77a1          84 INATSAG   90 (171)
T ss_dssp             EECCCC-
T ss_pred             eeccccc
Confidence            9999863

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.13  E-value=0.0075  Score=50.02  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=32.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.|+++..
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~a-k~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYA-RAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHH-HHcCCccceecchhhH
Confidence            477999999999999999875 8999999999988754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.11  E-value=0.0073  Score=49.71  Aligned_cols=110  Identities=17%  Similarity=0.248  Sum_probs=62.5

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEcc
Q 015895          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la-~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~  244 (398)
                      .+|+|||.|++|+.+|-.++ +++.-++..+|...........+.-.. ....+.  .......+.+ .++.||+|+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a-~~~~~~--~~i~~~~~~~-~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG-SSFYPT--VSIDGSDDPE-ICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT-GGGSTT--CEEEEESCGG-GGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhc-cccCCC--ceeecCCCHH-HhhCCcEEEEec
Confidence            37999999999999997763 355568999998875432211111000 000111  1122234454 478999999875


Q ss_pred             CC--Ch-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          245 VL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       245 Pl--t~-~T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      -.  .+ +++ .++  |       ...+....+++++|.++-  ++|.-.
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN--PvDvmt  125 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN--PVDIAT  125 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS--SHHHHH
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC--chHHHH
Confidence            32  22 222 222  1       123555678889999874  455443

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0076  Score=50.53  Aligned_cols=112  Identities=13%  Similarity=0.121  Sum_probs=63.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      +...+|+|||.|.+|+.+|-.++. ++.-++..||...........+..... ...+ .. ......+.++ ++.||+|+
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~-~~~~-~~-~~~~~~d~~~-~~~adivv   92 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGS-LFLS-TP-KIVFGKDYNV-SANSKLVI   92 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTT-TTCS-CC-EEEEESSGGG-GTTEEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcc-hhcC-CC-eEEeccchhh-hccccEEE
Confidence            555689999999999999988742 334489999988654222212211000 0001 11 1112235444 58999998


Q ss_pred             EccCC--Ch-hhh-hhc--cHHH-------HhcCCCCcEEEEcCCCchhcHH
Q 015895          242 LHPVL--DK-TTY-HLI--NKER-------LATMKKEAILVNCSRGPVIDEV  280 (398)
Q Consensus       242 l~~Pl--t~-~T~-~li--~~~~-------~~~mk~gailIN~aRG~~vde~  280 (398)
                      ++...  .+ +++ .++  |.+.       +....+++++++++.  ++|.=
T Consensus        93 itag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN--PvDv~  142 (159)
T d2ldxa1          93 ITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN--PVDIL  142 (159)
T ss_dssp             ECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS--SHHHH
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC--cHHHH
Confidence            87533  22 222 222  2222       334578899999987  44443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.029  Score=46.01  Aligned_cols=108  Identities=21%  Similarity=0.216  Sum_probs=62.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-CccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~--~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|+|||. |.+|+.+|-.|+.  .+.-++..+|...... ....+     +.+.... ........+..+.++.||+|+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~-g~a~D-----l~h~~~~~~~~~~~~~~~~~~~~~aDvvv   74 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTP-GVAVD-----LSHIPTAVKIKGFSGEDATPALEGADVVL   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHH-HHHHH-----HHTSCSSCEEEEECSSCCHHHHTTCSEEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccch-hHHHH-----HHCCccccCCcEEEcCCCccccCCCCEEE
Confidence            57999995 9999999987642  5678999999754321 11111     1111111 111111122345678999999


Q ss_pred             Ecc--CCChh-hh-hhc--c-------HHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          242 LHP--VLDKT-TY-HLI--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       242 l~~--Plt~~-T~-~li--~-------~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      ++.  |..+. +| .++  |       .+.+....|++++|.++.  ++|.-.
T Consensus        75 itaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~m~  125 (145)
T d2cmda1          75 ISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNTTV  125 (145)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHHHH
T ss_pred             ECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchHHH
Confidence            886  33332 22 222  1       234555678899999976  455443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.02  Score=47.74  Aligned_cols=94  Identities=16%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hc
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell------~~  236 (398)
                      .|.+|.|.|. |.+|....+.+ +.+|++|++.++++... + +       .++.|..........++.+-+      ..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a-~~~G~~vi~~~~~~~~~-~-~-------~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQ-K-I-------VLQNGAHEVFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHH-H-H-------HHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCEEEEEeccccccccccccc-cccCccccccccccccc-c-c-------ccccCcccccccccccHHHHhhhhhccCC
Confidence            5789999995 99999999975 89999999998765432 1 1       122333222111112333322      22


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .|+|+-++.  .+   . -...+..++++..++.++.
T Consensus        98 ~d~v~d~~g--~~---~-~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          98 IDIIIEMLA--NV---N-LSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             EEEEEESCH--HH---H-HHHHHHHEEEEEEEEECCC
T ss_pred             ceEEeeccc--HH---H-HHHHHhccCCCCEEEEEec
Confidence            577766653  11   1 2456777888888888753

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.98  E-value=0.0067  Score=54.81  Aligned_cols=121  Identities=15%  Similarity=0.163  Sum_probs=67.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE--------cCChh--hHHHHHHhhhhhhhhhcCCCC-----cccc
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQA--TRLEKFVTAYGQFLKANGEQP-----VTWK  225 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~--------d~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~  225 (398)
                      .+|.|+|+.|=|+|++|+.+|+.| ...|++|++.        |+..-  ..+-.+......  ...+...     .+..
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L-~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~  108 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKL-AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA--SGRNKVQDYADKFGVQ  108 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHH-HHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHH--HCCCCTHHHHHHHTCE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhh--hcCcchhhhhhhcCce
Confidence            469999999999999999999998 6899999864        33211  111111100000  0000000     0000


Q ss_pred             ccCCHHH-HhhcCCEEEEccCCChhhhhhccHHHHhcCCC-Cc-EEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          226 RASSMDE-VLREADVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       226 ~~~sl~e-ll~~aDiV~l~~Plt~~T~~li~~~~~~~mk~-ga-ilIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      . .+.++ +-..||+++-|     .+.+.|+.+...+++. ++ +++-.+-+++-++ +.-..|+++.|
T Consensus       109 ~-~~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI  170 (255)
T d1bgva1         109 F-FPGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNM  170 (255)
T ss_dssp             E-EETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTC
T ss_pred             e-echhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCC
Confidence            0 01112 22579998744     4577788887777764 33 6777777776554 33334554444

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.97  E-value=0.0091  Score=49.31  Aligned_cols=94  Identities=15%  Similarity=0.215  Sum_probs=58.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH----HHHhhcCCE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl----~ell~~aDi  239 (398)
                      .|.+|.|.|.|.||...++.+ +..|.+|++.+++.....  +       .+..|..........++    .+.....|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a-~~~g~~v~~~~~~~~r~~--~-------~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKLE--L-------AKELGADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH--H-------HHHTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeecccchhhhhHHH-hcCCCeEeccCCCHHHhh--h-------hhhcCcceecccccchhhhhcccccCCCce
Confidence            578999999999999998875 899999999998775421  1       12223222211111222    233444566


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      ++.+.+. +++   + ...+..++++..++.++
T Consensus        97 ~v~~~~~-~~~---~-~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          97 AVVTAVS-KPA---F-QSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEESSCC-HHH---H-HHHHHHEEEEEEEEECC
T ss_pred             EEeecCC-HHH---H-HHHHHHhccCCceEecc
Confidence            6665542 332   2 46777788888888875

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.91  E-value=0.0042  Score=52.83  Aligned_cols=79  Identities=20%  Similarity=0.203  Sum_probs=44.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCc--------cccccCCHHHHhhc
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV--------TWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~sl~ell~~  236 (398)
                      ++|||-|||+||+.+.|.+...-.++|++. |+.+..... +...++...  ......        +.....+..+++++
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~-~l~~~~~~~--~~~~~~~~~~~~~~~~~v~g~~~~~~~~   78 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEAR-MALKKGYDL--YVAIPERVKLFEKAGIEVAGTVDDMLDE   78 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHH-HHHHTTCCE--EESSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHH-HHHhcCCce--EecccccceeecccCcccCCChhHhhcC
Confidence            479999999999999998743335777655 444332211 111111000  000000        01111246777889


Q ss_pred             CCEEEEccCCC
Q 015895          237 ADVISLHPVLD  247 (398)
Q Consensus       237 aDiV~l~~Plt  247 (398)
                      +|+|+=|.|.-
T Consensus        79 vDvViEcTG~f   89 (171)
T d1cf2o1          79 ADIVIDCTPEG   89 (171)
T ss_dssp             CSEEEECCSTT
T ss_pred             CCEEEEccCCC
Confidence            99999999864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.86  E-value=0.0053  Score=51.72  Aligned_cols=95  Identities=12%  Similarity=0.089  Sum_probs=56.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----c
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-----~  236 (398)
                      -.|.+|.|+|.|.||...++.+ +.+|++ |++.|++.... + +.       ++.|....-.....++.+.+.     .
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~a-k~~g~~~v~~~~~~~~k~-~-~a-------~~~Ga~~~i~~~~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRL-E-LA-------KQLGATHVINSKTQDPVAAIKEITDGG   96 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH-H-HH-------HHHTCSEEEETTTSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcc-cccccceeeeeccHHHHH-H-HH-------HHcCCeEEEeCCCcCHHHHHHHHcCCC
Confidence            4578999999999999999985 788885 56677766432 1 11       112222111111123333222     2


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      .|+|+-|+.. +++.    +..+..++++..++.++
T Consensus        97 ~D~vid~~G~-~~~~----~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          97 VNFALESTGS-PEIL----KQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEEEECSCC-HHHH----HHHHHTEEEEEEEEECC
T ss_pred             CcEEEEcCCc-HHHH----HHHHhcccCceEEEEEe
Confidence            5888777763 2221    34567777777777765

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.85  E-value=0.008  Score=51.03  Aligned_cols=81  Identities=22%  Similarity=0.208  Sum_probs=44.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCC------CccccccCCHHHHhhcCC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQ------PVTWKRASSMDEVLREAD  238 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~sl~ell~~aD  238 (398)
                      .+|||.|||+||+.++|.+...-.+++++. |+.+..... +...++-..-.....      ..+.....++.++++.+|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAY-RAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHH-HHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHH-HhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            479999999999999998743445776644 554433221 111111000000000      000111235777778889


Q ss_pred             EEEEccCCC
Q 015895          239 VISLHPVLD  247 (398)
Q Consensus       239 iV~l~~Plt  247 (398)
                      +|+=|.|.-
T Consensus        82 vViEcTG~f   90 (172)
T d2czca2          82 IIVDATPGG   90 (172)
T ss_dssp             EEEECCSTT
T ss_pred             EEEECCCCC
Confidence            888888753

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.82  E-value=0.016  Score=47.71  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=27.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCC--cEEEEEcCChh
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQA  200 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG--~~V~~~d~~~~  200 (398)
                      ++|+||| .|.+|+.+|..+ ...+  -++..||....
T Consensus         1 MKV~IiGA~G~VG~~~a~~l-~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLL-AKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTCTTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHH-HhCCcccccccccchhh
Confidence            4799999 599999999987 4455  48999998753

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.82  E-value=0.024  Score=47.69  Aligned_cols=79  Identities=16%  Similarity=0.331  Sum_probs=46.9

Q ss_pred             CCeEEEEecChhHHHHHH--HHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          165 GQTVGVIGAGRIGSAYAR--MMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~--~la~--~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      +++|+|||.|.+|...+-  .+++  .+ +-++..+|...........+. .......+ .........+.+|.++.||+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~-~~~~~~~~-~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIA-KKYVEEVG-ADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHH-HHHHHHTT-CCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHH-HHHHHhcC-CCeEEEEeCChhhcccCCCe
Confidence            468999999999976432  2222  33 359999999875421111110 00011111 22233345689999999999


Q ss_pred             EEEccC
Q 015895          240 ISLHPV  245 (398)
Q Consensus       240 V~l~~P  245 (398)
                      |++...
T Consensus        80 Vv~~~~   85 (171)
T d1obba1          80 VINTAM   85 (171)
T ss_dssp             EEECCC
T ss_pred             Eeeecc
Confidence            998754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.79  E-value=0.023  Score=47.39  Aligned_cols=76  Identities=13%  Similarity=0.176  Sum_probs=45.6

Q ss_pred             CeEEEEecChhHHHHHHH-HHh---cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIGAGRIGSAYARM-MVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~-la~---~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      ++|.|||.|.+|...+-. +++   .+ .-++..+|...... +...+. ......   .........+.++.++.||+|
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~-~~~~d~-~~~~~~---~~~~~~~t~~~~~~l~~aDvV   75 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQ-KIVVDF-VKRLVK---DRFKVLISDTFEGAVVDAKYV   75 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHH-HHHHHH-HHHHHT---TSSEEEECSSHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHH-HHHHHH-HHhhhc---cCceEEEecCcccccCCCCEE
Confidence            479999999999776632 212   12 35899999987642 221111 111111   112222335788899999999


Q ss_pred             EEccCC
Q 015895          241 SLHPVL  246 (398)
Q Consensus       241 ~l~~Pl  246 (398)
                      ++..-.
T Consensus        76 Vita~~   81 (162)
T d1up7a1          76 IFQFRP   81 (162)
T ss_dssp             EECCCT
T ss_pred             EEeccc
Confidence            998753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0057  Score=51.10  Aligned_cols=93  Identities=19%  Similarity=0.309  Sum_probs=57.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHHhhcCCEE
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~ell~~aDiV  240 (398)
                      .|.+|.|+|.|.||...++.+ +.+|+++++.|+......  +.       ++.|.....  ...+   ..+.....|++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qla-k~~Ga~~i~~~~~~~~~~--~a-------~~lGad~~i--~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKRE--AA-------KALGADEVV--NSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--HH-------HHHTCSEEE--ETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHh-hcccccchhhccchhHHH--HH-------hccCCcEEE--ECchhhHHHHhcCCCcee
Confidence            578999999999999999985 899999999998776421  11       122322111  1111   11223457777


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      +-++.... +.    ...+..++++..++.++.
T Consensus        98 id~~g~~~-~~----~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          98 LNTVAAPH-NL----DDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EECCSSCC-CH----HHHHTTEEEEEEEEECCC
T ss_pred             eeeeecch-hH----HHHHHHHhcCCEEEEecc
Confidence            77776422 11    345666777777776643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.028  Score=45.87  Aligned_cols=94  Identities=9%  Similarity=0.006  Sum_probs=54.4

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhcCCEEEE
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVISL  242 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---l~el-l~~aDiV~l  242 (398)
                      .+-|+|+|++|+.+++.| ...|.+|++.|..+....+...+     ....+.. .......+   |+++ +.+||.|++
T Consensus         5 HiII~G~g~~g~~l~~~L-~~~~~~v~vId~d~~~~~~~~~~-----~~~~~~~-vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           5 HFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQ-----RLGDNAD-VIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHH-----HHCTTCE-EEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCCEEEEeccchhHHHHHHH-----hhcCCcE-EEEccCcchHHHHHhccccCCEEEE
Confidence            489999999999999998 68899999998876432211101     0111111 11111122   2222 578999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEE
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILV  269 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailI  269 (398)
                      +++...  ..+.-......+.+...+|
T Consensus        78 ~~~~d~--~n~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          78 LSDNDA--DNAFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             CSSCHH--HHHHHHHHHHHHTSSSCEE
T ss_pred             ccccHH--HHHHHHHHHHHhCCCCceE
Confidence            998633  3333344455555554333

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.53  E-value=0.01  Score=47.28  Aligned_cols=90  Identities=11%  Similarity=0.149  Sum_probs=51.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhcCCEEE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS  241 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el----l~~aDiV~  241 (398)
                      |.+-|+|+|++|+.+++.| ++.+  |.+.|..+.... .        ....+.. .-.....+.+-+    +.+|+.++
T Consensus         1 kHivI~G~g~~g~~l~~~L-~~~~--i~vi~~d~~~~~-~--------~~~~~~~-~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL-RGSE--VFVLAEDENVRK-K--------VLRSGAN-FVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS-CGGG--EEEEESCTTHHH-H--------HHHTTCE-EEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-cCCC--CEEEEcchHHHH-H--------HHhcCcc-ccccccCCHHHHHHhhhhcCcEEE
Confidence            5689999999999999997 6665  455555544321 1        1111211 111112233222    67899999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEE
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVN  270 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN  270 (398)
                      ++.+..  ...++-...++.+.|...+|-
T Consensus        68 ~~~~~d--~~n~~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          68 VNLESD--SETIHCILGIRKIDESVRIIA   94 (129)
T ss_dssp             ECCSSH--HHHHHHHHHHHHHCSSSCEEE
T ss_pred             Eeccch--hhhHHHHHHHHHHCCCceEEE
Confidence            998853  344444455566666644433

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.43  E-value=0.013  Score=48.10  Aligned_cols=106  Identities=19%  Similarity=0.291  Sum_probs=62.1

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-c-cccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-V-TWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~sl~ell~~aDiV  240 (398)
                      .+|+||| .|.+|+.+|-.++ ..|  -++..+|........  .+     +....... . ......+..|.++.||+|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~-~~~~~~elvLiDi~~~~~~a--~D-----l~~~~~~~~~~~~~~~~~~~~~~~~aDiv   72 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPGVA--AD-----LSHIETRATVKGYLGPEQLPDCLKGCDVV   72 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHHHH--HH-----HTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             CeEEEECCCChHHHHHHHHHH-hCCccceEEEEeccccchhh--HH-----HhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence            3799999 5999999999874 344  379999986533111  11     11111111 0 111234567888999999


Q ss_pred             EEccC--CCh-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          241 SLHPV--LDK-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       241 ~l~~P--lt~-~T~-~li--~~-------~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      ++...  ..+ ++| .++  |.       +.+....+.++++.++.  ++|.-.
T Consensus        73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~~t  124 (144)
T d1mlda1          73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNSTI  124 (144)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHHH
T ss_pred             EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhhhH
Confidence            98754  333 222 122  11       23444578899999876  466543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.35  E-value=0.043  Score=44.78  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=57.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHh-cCCcEEEEEcCChhh-HHH-HHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVE-GFKMNLIYYDLYQAT-RLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~-~fG~~V~~~d~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      .+|+||| .|.+|+.+|-.++. ++.-++..||..... ..+ ...+......  .. ..... ...+.++ ++.||+|+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~--~~-~~~~i-~~~~~~~-~~~aDiVv   75 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA--YD-SNTRV-RQGGYED-TAGSDVVV   75 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT--TT-CCCEE-EECCGGG-GTTCSEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc--cc-CCceE-eeCCHHH-hhhcCEEE
Confidence            3799999 59999999988742 444589999964322 111 1111111000  01 11111 1234444 58999999


Q ss_pred             EccC--CChh-hh-hhc--c-------HHHHhcCCCCcEEEEcCC
Q 015895          242 LHPV--LDKT-TY-HLI--N-------KERLATMKKEAILVNCSR  273 (398)
Q Consensus       242 l~~P--lt~~-T~-~li--~-------~~~~~~mk~gailIN~aR  273 (398)
                      ++.-  ..+. +| .++  |       .+.+....++++++.++.
T Consensus        76 itaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             EecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            8743  3332 22 122  1       234566778899999865

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.019  Score=51.05  Aligned_cols=40  Identities=28%  Similarity=0.450  Sum_probs=35.2

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +.|.||++.|-|.+. ||+++|+.+ ...|++|+..|++...
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~l-a~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEF-AKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            469999999999965 999999998 4889999999998754

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.03  E-value=0.022  Score=44.92  Aligned_cols=100  Identities=12%  Similarity=0.123  Sum_probs=68.2

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGl----G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      |+|.|||.    |+.|..+.+.| +.+|.+|+..+|.....                   .+...+.+++|+-..-|+++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~~lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHH-HHCCCEEEEEccccccc-------------------cCccccccchhccccceEEE
Confidence            68999994    78899999998 78999999998865321                   12233568888888889999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCcc
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~  292 (398)
                      +++|. +.+..++. +.. .+...++++..+   .. .+++.+.+++..+.
T Consensus        62 i~vp~-~~~~~~l~-~~~-~~g~k~v~~~~g---~~-~~~~~~~a~~~gi~  105 (116)
T d1y81a1          62 FVVPP-KVGLQVAK-EAV-EAGFKKLWFQPG---AE-SEEIRRFLEKAGVE  105 (116)
T ss_dssp             ECSCH-HHHHHHHH-HHH-HTTCCEEEECTT---SC-CHHHHHHHHHHTCE
T ss_pred             EEeCH-HHHHHHHH-HHH-hcCCceEEeccc---hh-hHHHHHHHHHcCCE
Confidence            99994 44556554 333 344456666543   33 44566777665553

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.01  E-value=0.017  Score=48.14  Aligned_cols=95  Identities=15%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----cC
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-----~a  237 (398)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++..+. +.        .++.+....-....+..++..+     ..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a-~~~g~~~vv~~~~~~~k~-~~--------~~~~ga~~~i~~~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLL-KVMTPATVIALDVKEEKL-KL--------AERLGADHVVDARRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESSHHHH-HH--------HHHTTCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeCCChHHHHHHHHH-HhhcCcccccccchhHHH-HH--------HhhcccceeecCcccHHHHHHHhhCCCCc
Confidence            477999999999999999986 67775 778888876532 11        1122322111111122333332     36


Q ss_pred             CEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       238 DiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      |+|+-++.. +.+   + ...+..++++..++.++-
T Consensus       102 d~vid~~g~-~~~---~-~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         102 NVAMDFVGS-QAT---V-DYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEEEESSCC-HHH---H-HHGGGGEEEEEEEEECCC
T ss_pred             eEEEEecCc-chH---H-HHHHHHHhCCCEEEEEeC
Confidence            777777763 222   1 445677788888887653

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.98  E-value=0.05  Score=45.17  Aligned_cols=103  Identities=24%  Similarity=0.215  Sum_probs=56.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--cCCE
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~--~aDi  239 (398)
                      .+|||||+|.||+..++.+ +...    ..+...+.....  .                ........+++|++.  +.|+
T Consensus         8 ~kv~iIG~G~~g~~h~~~l-~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~e~l~~~~iD~   68 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDL-KDPRSAAFLNLIGFVSRREL--G----------------SLDEVRQISLEDALRSQEIDV   68 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TSHHHHTTEEEEEEECSSCC--C----------------EETTEEBCCHHHHHHCSSEEE
T ss_pred             cEEEEEcCCHHHHHHHHHH-HhCCCCcEEEEEeccchHHH--H----------------HhhccCcCCHHHHHhCCCcch
Confidence            3799999999999988876 4322    333332221110  0                000112357899986  4588


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEc-CCCchhcHHHHHHHHhcCCc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~-aRG~~vde~aL~~aL~~g~i  291 (398)
                      |++++|.  ++..-+-...++.=|  .+++.= ---.+-+.++|.+..++.++
T Consensus        69 V~I~tp~--~~H~~~~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~  117 (172)
T d1lc0a1          69 AYICSES--SSHEDYIRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGR  117 (172)
T ss_dssp             EEECSCG--GGHHHHHHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             hhhcccc--cccccccccccccch--hhhcCCCccccHHHHHHHHHHHHHcCC
Confidence            9999994  333323333444322  255542 12245666778776655443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.87  E-value=0.027  Score=42.86  Aligned_cols=73  Identities=16%  Similarity=0.255  Sum_probs=47.7

Q ss_pred             CCCeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          164 KGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~-vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      +.|++=|||.|-+|.+ +|+.| +..|.+|.++|....+..+.        +.+.|..   +....+ .+.+...|+|+.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L-~~~G~~VsGSD~~~~~~~~~--------L~~~Gi~---v~~g~~-~~~i~~~d~vV~   73 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEIL-LNEGYQISGSDIADGVVTQR--------LAQAGAK---IYIGHA-EEHIEGASVVVV   73 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHH-HHHTCEEEEEESCCSHHHHH--------HHHTTCE---EEESCC-GGGGTTCSEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHH-HhCCCEEEEEeCCCChhhhH--------HHHCCCe---EEECCc-cccCCCCCEEEE
Confidence            5678999999999954 69987 79999999999876654433        2223321   111112 234578898876


Q ss_pred             ccCCChh
Q 015895          243 HPVLDKT  249 (398)
Q Consensus       243 ~~Plt~~  249 (398)
                      .-.-.++
T Consensus        74 S~AI~~~   80 (96)
T d1p3da1          74 SSAIKDD   80 (96)
T ss_dssp             CTTSCTT
T ss_pred             CCCcCCC
Confidence            6443333

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.79  E-value=0.028  Score=46.88  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=60.6

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hc
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell------~~  236 (398)
                      .|.+|.|.|. |.+|+..++.+ +.+|++|++.+++.+.. + +       +++.|..........++.+-+      ..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla-~~~g~~vi~~~~~~~~~-~-~-------l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKR-E-M-------LSRLGVEYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH-H-H-------HHTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCCcccccchhh-ccccccceeeecccccc-c-c-------cccccccccccCCccCHHHHHHHHhCCCC
Confidence            4789999885 99999999985 89999999988765432 1 1       222333222111222343322      34


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .|+|+-++..  ++    ..+.+..++++..+|.++.
T Consensus        95 ~d~v~d~~g~--~~----~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          95 VDVVLNSLAG--EA----IQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             EEEEEECCCT--HH----HHHHHHTEEEEEEEEECSC
T ss_pred             EEEEEecccc--hH----HHHHHHHhcCCCEEEEEcc
Confidence            7888877762  22    1456788888889988864

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.77  E-value=0.057  Score=40.49  Aligned_cols=68  Identities=18%  Similarity=0.153  Sum_probs=45.9

Q ss_pred             CCeEEEEecChhHH-HHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       165 gktvGIIGlG~IG~-~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .++|=|||.|-+|. ++|+.| +..|++|.++|...++..+.        ++..|..   +...-+ .+-+..+|+|+..
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~~--------L~~~Gi~---i~~gh~-~~~i~~~d~vV~S   67 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTAY--------LRKLGIP---IFVPHS-ADNWYDPDLVIKT   67 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH--------HHHTTCC---EESSCC-TTSCCCCSEEEEC
T ss_pred             CcEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHHH--------HHHCCCe---EEeeec-ccccCCCCEEEEe
Confidence            36788999999998 589987 79999999999887664443        3344432   111111 2334679998766


Q ss_pred             cC
Q 015895          244 PV  245 (398)
Q Consensus       244 ~P  245 (398)
                      --
T Consensus        68 sA   69 (89)
T d1j6ua1          68 PA   69 (89)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.75  E-value=0.037  Score=42.94  Aligned_cols=64  Identities=11%  Similarity=0.126  Sum_probs=46.4

Q ss_pred             CCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 015895          164 KGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (398)
Q Consensus       164 ~gktvGIIGl----------G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~el  233 (398)
                      ..|+|||+|+          ..-.-.+.+.| ...|++|.+|||+.....                .........+++++
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L-~~~g~~v~iyDP~v~~~~----------------~~~~~~~~~~l~~~   76 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDIL-KSKDIKIIIYEPMLNKLE----------------SEDQSVLVNDLENF   76 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHH-HTSSCEEEEECTTCSCCC----------------TTCCSEECCCHHHH
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHH-hccccceeeecCCcChhH----------------hccCCEEEeCHHHH
Confidence            3468999998          35677889987 789999999999875310                01112234689999


Q ss_pred             hhcCCEEEEcc
Q 015895          234 LREADVISLHP  244 (398)
Q Consensus       234 l~~aDiV~l~~  244 (398)
                      +..||+|++..
T Consensus        77 ~~~sDiII~~~   87 (108)
T d1dlja3          77 KKQANIIVTNR   87 (108)
T ss_dssp             HHHCSEEECSS
T ss_pred             HhhCCEEEEcC
Confidence            99999877544

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.078  Score=44.07  Aligned_cols=107  Identities=17%  Similarity=0.125  Sum_probs=63.2

Q ss_pred             ccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       162 ~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      +|.|++|++||=|+ +-.+.++.+ ..||+++.+..|....-.....+.........+   ..+....++++.+..+|+|
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~-~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~---~~i~~~~d~~~~~~~advi   76 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVL   76 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHH-HHcCCEEEEEeccccCCchHHHHHHHHHHhccC---CEEEEEcCHHHHHhhhhhe
Confidence            47899999999763 334444443 468999999887522100000010000011112   1123456899999999999


Q ss_pred             EEccCCChhh------------hhhccHHHHhcCCCCcEEEEcC
Q 015895          241 SLHPVLDKTT------------YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       241 ~l~~Plt~~T------------~~li~~~~~~~mk~gailIN~a  272 (398)
                      ..-.......            .-.++.+.++.++++++|.-+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          77 ITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             EECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eeeceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            8765433211            1225677888888988888873

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.60  E-value=0.13  Score=42.50  Aligned_cols=104  Identities=14%  Similarity=0.228  Sum_probs=65.1

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      +|.|++|++||=| ++..+.+..+ ..||+++....|..   ++......+...   ...+   ..+....++++.++.+
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~d~~ea~~~a   73 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNA---AESG---GSFELLHDPVKAVKDA   73 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHH---HHHT---CEEEEESCHHHHTTTC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEecccccCCChHHHHHHHHhh---hccc---ceEEEecCHHHHhhhc
Confidence            4789999999974 4667777776 68999999998742   111111111100   0001   1123346899999999


Q ss_pred             CEEEEccCC------Chhh------hhhccHHHHhcCCCCcEEEEcC
Q 015895          238 DVISLHPVL------DKTT------YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       238 DiV~l~~Pl------t~~T------~~li~~~~~~~mk~gailIN~a  272 (398)
                      |+|..-.=.      ..+.      .-.++.+.++.+|++++|.-|.
T Consensus        74 dviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          74 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             cEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            999754211      1111      1245788999999999998874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.57  E-value=0.027  Score=46.97  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=32.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~  201 (398)
                      ++|+|.|+|.|..+++++..| ...|+ +|.+++|+...
T Consensus        16 ~~~~vlIlGaGGaarai~~aL-~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEecccHHH
Confidence            678999999999999999988 67887 79999998764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.55  E-value=0.037  Score=49.43  Aligned_cols=39  Identities=26%  Similarity=0.286  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +|+||++.|.|. +.||+++|++| ..-|++|+..+++...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~l-a~~G~~V~i~~r~~~~   42 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEEL-AGLGARVYTCSRNEKE   42 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            699999999995 77999999998 5899999999998653

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.54  E-value=0.023  Score=45.74  Aligned_cols=108  Identities=17%  Similarity=0.139  Sum_probs=69.0

Q ss_pred             cCCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          163 LKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       163 l~gktvGIIGl----G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      ++=++|.|||.    |..|..+.+.|..++..+|+..+|.....                   .+...+.|++|+=..-|
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-------------------~G~~~y~sl~dlp~~vD   66 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-------------------QGVKAYKSVKDIPDEID   66 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-------------------TTEECBSSTTSCSSCCS
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-------------------CCeEeecchhhcCCCCc
Confidence            55689999997    89999999998433347999999875321                   12334568888888899


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc-----hhcHHHHHHHHhcCCc
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-----VIDEVALVEHLKQNPM  291 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~-----~vde~aL~~aL~~g~i  291 (398)
                      ++++++|. +.+..++. +..+.=-++++++.-+-++     .-.+++|.+..++..+
T Consensus        67 lvvi~vp~-~~~~~~~~-~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          67 LAIIVVPK-RFVKDTLI-QCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             EEEECSCH-HHHHHHHH-HHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEecCh-HHhHHHHH-HHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            99999994 55666663 3333223344554433222     2334456666665443

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=94.53  E-value=0.079  Score=42.69  Aligned_cols=102  Identities=9%  Similarity=0.104  Sum_probs=69.0

Q ss_pred             CCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGl----G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .-|+|.|||.    ++.|..+.+.| +.+|.++..+.+.+...                 .-.+...+.++.++-..-|+
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L-~~~g~~~~~v~~~~~~~-----------------~i~g~~~~~~l~~i~~~iD~   73 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHH-hcCCCCceEEEeccccc-----------------eeeceecccchhhccCCCce
Confidence            4468999997    78999999998 78999999998865321                 01123335678888788899


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcC
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g  289 (398)
                      +++++|. +.+..++.+ .. .+...++++..+   ..++++...|.+.|
T Consensus        74 v~v~~p~-~~v~~~v~~-~~-~~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          74 LDVFRPP-SALMDHLPE-VL-ALRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             EEECSCH-HHHTTTHHH-HH-HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             EEEeccH-HHHHHHHHH-HH-hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            9999993 455666543 22 345567777654   34555544444444

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.48  E-value=0.096  Score=47.04  Aligned_cols=40  Identities=10%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             cccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+|+||++.|-| .|.||+++|+.| ...|++|++.|++...
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~l-a~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLL-SSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            589999999999 489999999998 4899999999998754

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.37  E-value=0.17  Score=41.53  Aligned_cols=103  Identities=20%  Similarity=0.240  Sum_probs=61.8

Q ss_pred             cCCCeEEEEec--ChhHHHHHHHHHhcCCcEEEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcC
Q 015895          163 LKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (398)
Q Consensus       163 l~gktvGIIGl--G~IG~~vA~~la~~fG~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~a  237 (398)
                      |.|++|.+||=  .++-.+....+ ..||+++....|..-   .........+   ....+   ..+....++++.++.+
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~-~~~g~~i~~~~P~~~~~~~~~~~~~~~~---~~~~~---~~i~~~~d~~~ai~~a   73 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEI---VKETD---GSVSFTSNLEEALAGA   73 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHH---HHHHC---CEEEEESCHHHHHTTC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEecchhhhhhhhHHHHHHHH---HhhcC---CceEEEecHHHhhhhh
Confidence            68999999994  58999999986 679999999887531   1110000000   01111   1233446899999999


Q ss_pred             CEEEEccCCChh------------h-hhhccHHHHhcCCCCcEEEEcC
Q 015895          238 DVISLHPVLDKT------------T-YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       238 DiV~l~~Plt~~------------T-~~li~~~~~~~mk~gailIN~a  272 (398)
                      |+|..-.-....            . ....+......+|+++++.-|.
T Consensus        74 Dviyt~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          74 DVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             SEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             hheeccceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            999765432111            0 1122333444578888888763

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.32  E-value=0.13  Score=43.53  Aligned_cols=104  Identities=12%  Similarity=0.157  Sum_probs=65.1

Q ss_pred             ccCCCeEEEEec--ChhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          162 LLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       162 ~l~gktvGIIGl--G~IG~~vA~~la~~fG~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      .|.|.+|++||=  -++..+.+..+ ..||+++.+..|..   .+..-...+.+   ....+   ..+....++++.++.
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~-~~~G~~l~l~~P~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~d~~eai~~   74 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKF---AEESG---AKLTLTEDPKEAVKG   74 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHH---HHHHT---CEEEEESCHHHHTTT
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHH-HHcCCEEEEEccHHHHhhhHHHHHHHHH---hhccC---CeEEEEeChhhcccc
Confidence            488999999994  48999999987 58999999998843   11111111110   01111   123345689999999


Q ss_pred             CCEEEEccCCC----hhh----------hhhccHHHHhcCCCCcEEEEcC
Q 015895          237 ADVISLHPVLD----KTT----------YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       237 aDiV~l~~Plt----~~T----------~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|+|..-.=..    .+.          ..+........+|+++++.-|-
T Consensus        75 aDvVyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          75 VDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             ccEEEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            99996544211    110          1122344556789999998885

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.1  Score=42.58  Aligned_cols=111  Identities=22%  Similarity=0.283  Sum_probs=59.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~--~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      |+|||||. |.+|+++.++|..  .| -.++..+..+......         ...... ........+ .+.++.+|+++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~---------~~~~~~-~~~~~~~~~-~~~~~~~DivF   70 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA---------PSFGGT-TGTLQDAFD-LEALKALDIIV   70 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC---------CGGGTC-CCBCEETTC-HHHHHTCSEEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc---------ccccCC-ceeeecccc-hhhhhcCcEEE
Confidence            58999998 9999999986532  22 2466666544322100         000000 001111122 23468999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc-----------hhcHHHHHHHHhcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-----------VIDEVALVEHLKQNP  290 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~-----------~vde~aL~~aL~~g~  290 (398)
                      +++|.. ....+  ...+...+.+.++|+.|.--           =|+.+.|..+++.|.
T Consensus        71 ~a~~~~-~s~~~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          71 TCQGGD-YTNEI--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             ECSCHH-HHHHH--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             EecCch-HHHHh--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence            999952 22222  23333344456778776521           245666777777643

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.11  E-value=0.21  Score=41.55  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=32.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~  201 (398)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~a-k~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEK   65 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCChHHHHHHHHH-HHhCCceeeeeccchHH
Confidence            3677999999999999999985 89998 68888987754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.042  Score=48.86  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=35.6

Q ss_pred             ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       160 g~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      |..|.||++.|-|- +.||+++|++|+ ..|++|+..|++...
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDESG   42 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            45799999999997 789999999984 789999999987643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.057  Score=47.34  Aligned_cols=40  Identities=23%  Similarity=0.294  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +.|+||++-|.|. +.||+++|++| ...|++|+..|++...
T Consensus         1 ~slkGKvalITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERL-VGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCChHH
Confidence            3699999999998 45999999998 4889999999987643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.12  Score=45.45  Aligned_cols=39  Identities=15%  Similarity=0.163  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +|+||++.|.|- +.||+++|++| ...|++|+..+++.+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKAL-HASGAKVVAVTRTNSD   41 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            589999999998 56999999998 5899999999987643

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.94  E-value=0.13  Score=42.05  Aligned_cols=99  Identities=20%  Similarity=0.304  Sum_probs=62.2

Q ss_pred             cCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       163 l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      |.|++|++||=   |++..+.+..+ ..||++++.+-|..... ....       ....   ...+....++++.++.+|
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l-~~~g~~~~~~~p~~~~~~~~~~-------~~~~---~~~~~~~~d~~eai~~aD   69 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEI-------LDEL---NYPVKEVENPFEVINEVD   69 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHH-------HTTC---CSCEEEESCGGGTGGGCS
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH-HHcCCeeEEEecccccccchhh-------cccC---CCeEEEEeCHHHHhhcCC
Confidence            57999999996   56999999986 68999876554422111 0110       1111   122344568999999999


Q ss_pred             EEEEccCCCh----h-------hhhhccHHHHhcCCCCcEEEEcC
Q 015895          239 VISLHPVLDK----T-------TYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       239 iV~l~~Plt~----~-------T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|..---...    +       ..--++.+.++.+|++++|.-|.
T Consensus        70 vvy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          70 VLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             EEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             eEEEeeeeehhccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence            9864311110    0       01125788888888888888773

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.90  E-value=0.063  Score=47.81  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +|+||++.|.|-+ .||+++|++|+ ..|++|+..|++...
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAV-AAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            6899999999985 59999999984 789999999987654

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=93.85  E-value=0.15  Score=41.64  Aligned_cols=111  Identities=16%  Similarity=0.201  Sum_probs=58.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~--~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ++|||||. |-+|+++.++|..  .+ ..++..+..+....  +       ... ............+ .+.++++|+++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g--k-------~~~-~~~~~~~~~~~~~-~~~~~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--P-------APN-FGKDAGMLHDAFD-IESLKQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS--B-------CCC-SSSCCCBCEETTC-HHHHTTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc--c-------ccc-cCCcceeeecccc-hhhhccccEEE
Confidence            57999997 9999999987632  12 24665554332210  0       000 0000001111122 35578999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCc-----------hhcHHHHHHHHhcCC
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-----------VIDEVALVEHLKQNP  290 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~-----------~vde~aL~~aL~~g~  290 (398)
                      +|+|. ..+..+.  ..+.....++++||.|.-=           =++.+.+.++++.|+
T Consensus        70 ~alp~-~~s~~~~--~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          70 TCQGG-SYTEKVY--PALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             ECSCH-HHHHHHH--HHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             EecCc-hHHHHHh--HHHHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            99994 2333332  2333334456788776521           245555555555543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.70  E-value=0.064  Score=47.32  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=33.3

Q ss_pred             cccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+|+||++.|.|.+   .||+++|++|+ ..|++|+..++...
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la-~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCcHH
Confidence            47999999999974   49999999984 78999998887643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.66  E-value=0.086  Score=46.67  Aligned_cols=36  Identities=22%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             cCCCeEEEEec-C--hhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          163 LKGQTVGVIGA-G--RIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       163 l~gktvGIIGl-G--~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      |+||++.|.|- |  -||.++|+.| ...|++|+..++..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~l-a~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHH-HHCCCEEEEEeCCH
Confidence            89999999996 4  4999999998 58999999999874

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.077  Score=47.29  Aligned_cols=40  Identities=25%  Similarity=0.376  Sum_probs=34.8

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ..|+||++.|.|.+. ||+++|+.|+ ..|++|+..+|+...
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la-~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLA-KMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            349999999999855 9999999985 789999999998654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.40  E-value=0.12  Score=45.90  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             cCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      |+||++-|-|-+ .||+++|++|+ ..|++|+..|++...
T Consensus         2 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            789999999985 59999999984 889999999997654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.38  E-value=0.29  Score=40.48  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=32.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~  201 (398)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~a-k~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceeeccCChHHH
Confidence            4678999999999999999986 78886 89999987754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.35  E-value=0.4  Score=39.74  Aligned_cols=77  Identities=12%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             CeEEEEecChhHHHHH--HHHHh--cC-CcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          166 QTVGVIGAGRIGSAYA--RMMVE--GF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA--~~la~--~f-G~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+|.|||.|.+|...+  ..+++  .| +-++..+|.......  ....+.+.   ...+ .+.......+..|.++.||
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~d~~eal~~AD   79 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI---REKA-PDIEFAATTDPEEAFTDVD   79 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHH---HHHC-TTSEEEEESCHHHHHSSCS
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHH---HHhC-CCcceEecCChhhccCCCC
Confidence            4799999999886533  32211  22 248999999875421  12122111   1111 2222334468899999999


Q ss_pred             EEEEccCC
Q 015895          239 VISLHPVL  246 (398)
Q Consensus       239 iV~l~~Pl  246 (398)
                      +|+++.-.
T Consensus        80 ~Vvitag~   87 (167)
T d1u8xx1          80 FVMAHIRV   87 (167)
T ss_dssp             EEEECCCT
T ss_pred             EEEECCCc
Confidence            99998753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.25  E-value=0.05  Score=44.88  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=54.2

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHhh-----
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLR-----  235 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-l~ell~-----  235 (398)
                      .|.+|.|+|. |.+|...++.+ +..| .+|++.+++....  ++.+       +.|..........+ .+++.+     
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~-~~~g~~~V~~~~~~~~~~--~~~~-------~~Ga~~~i~~~~~~~~~~~~~~~~~~   96 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAV--EAAK-------RAGADYVINASMQDPLAEIRRITESK   96 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHH--HHHH-------HHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEEeccccceeeeeecc-cccccccccccccchhhH--HHHH-------HcCCceeeccCCcCHHHHHHHHhhcc
Confidence            5678999995 99999999886 6777 5899999887542  1111       12221111111122 233322     


Q ss_pred             cCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       236 ~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      ..|+++-+... +++-    +..+..++++..++.++
T Consensus        97 ~~d~vid~~g~-~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          97 GVDAVIDLNNS-EKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CEEEEEESCCC-HHHH----TTGGGGEEEEEEEEECC
T ss_pred             cchhhhccccc-chHH----HhhhhhcccCCEEEEec
Confidence            36777766653 2221    23456677777777764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.11  Score=45.65  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|.|- +.||+++|++| ...|++|+..|++...
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQAL-HATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            589999999998 56999999998 4789999999997653

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.14  E-value=0.17  Score=40.87  Aligned_cols=101  Identities=9%  Similarity=0.118  Sum_probs=67.5

Q ss_pred             CCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       164 ~gktvGIIGl----G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      .-|+|.|||.    |+.|..+++.| +.+|.+|+..+|.....                   .|...+.+++++-..-|+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L-~~~g~~v~pVnP~~~~i-------------------~G~~~~~sl~dlp~~iD~   77 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEEV-------------------LGRKCYPSVLDIPDKIEV   77 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGCSSCCSE
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHH-HHCCCEEEEECCccccc-------------------CCCcccccccccCccceE
Confidence            4578999996    57999999998 78999999999865321                   122335688898888999


Q ss_pred             EEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCc
Q 015895          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (398)
Q Consensus       240 V~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i  291 (398)
                      +++++|. +.+..++.+ ..+ +...++++..+   ..+++ +.+.+++..+
T Consensus        78 v~i~vp~-~~~~~~~~e-~~~-~g~k~v~~~~G---~~~ee-~~~~a~~~gi  122 (139)
T d2d59a1          78 VDLFVKP-KLTMEYVEQ-AIK-KGAKVVWFQYN---TYNRE-ASKKADEAGL  122 (139)
T ss_dssp             EEECSCH-HHHHHHHHH-HHH-HTCSEEEECTT---CCCHH-HHHHHHHTTC
T ss_pred             EEEEeCH-HHHHHHHHH-HHH-hCCCEEEEecc---ccCHH-HHHHHHHCCC
Confidence            9999994 344455433 332 34556777654   23444 3444444333

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.12  E-value=0.24  Score=43.25  Aligned_cols=138  Identities=14%  Similarity=0.125  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh--
Q 015895          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--  199 (398)
Q Consensus       122 ~vAE~~l~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~--  199 (398)
                      .+|=-+++-+|+..|-                     .|..|+..++.|.|.|.-|-.+|+.+....--+++.+|+.-  
T Consensus         4 GTaaV~LAgll~a~~~---------------------~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1           4 GTAVVVSAAFLNALKL---------------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            3566677888887773                     33579999999999999999999988433334799999761  


Q ss_pred             ----h-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          200 ----A-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       200 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                          . .....+...+    .+... .  .....++.+++..+|++...-     +.+++.++..+.|.++.++.=.|..
T Consensus        63 ~~~r~~~~~~~~~~~~----~~~~~-~--~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNP  130 (222)
T d1vl6a1          63 NENDPETCLNEYHLEI----ARITN-P--ERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANP  130 (222)
T ss_dssp             CTTSGGGCSSHHHHHH----HHTSC-T--TCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSS
T ss_pred             EcCcccccccHHHHHH----Hhhhc-c--hhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCC
Confidence                1 1111111111    11100 0  112357889999999876544     4778888999999999999998886


Q ss_pred             chhcHHHHHHHHhcCCccEE
Q 015895          275 PVIDEVALVEHLKQNPMFRV  294 (398)
Q Consensus       275 ~~vde~aL~~aL~~g~i~gA  294 (398)
                      ..--|.  ..+...|+..-|
T Consensus       131 t~~~e~--~~a~~~G~ai~A  148 (222)
T d1vl6a1         131 VPEIDP--ELAREAGAFIVA  148 (222)
T ss_dssp             SCSSCH--HHHHHTTCSEEE
T ss_pred             ccchhh--hhheeccceEEe
Confidence            543333  345666764433

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.11  E-value=0.4  Score=39.73  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=33.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~  201 (398)
                      -.|.+|.|+|.|.+|...++.+ +.+| .+|++.|+...+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~a-k~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGC-KSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceEEEecCcHHH
Confidence            4578999999999999999986 7998 589999998765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.10  E-value=0.22  Score=43.87  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +|+||++.|-|- +.||+++|++|+ ..|++|+..|++...
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            689999999998 459999999984 889999999987654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.14  Score=44.89  Aligned_cols=39  Identities=23%  Similarity=0.201  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +|+||++-|-|- +.||+++|++| ...|++|+..|++...
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l-~~~G~~Vv~~~r~~~~   40 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETL-AARGAKVIGTATSENG   40 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            478999999996 66999999998 4789999999987643

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.04  E-value=0.17  Score=44.68  Aligned_cols=40  Identities=25%  Similarity=0.255  Sum_probs=34.8

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+++||++.|.|-+. ||+++|++|+ ..|++|+..+++...
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            369999999999855 9999999984 899999999987654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.04  E-value=0.065  Score=44.54  Aligned_cols=91  Identities=16%  Similarity=0.172  Sum_probs=56.0

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH--HhhcCCEE
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREADVI  240 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~e--ll~~aDiV  240 (398)
                      .|++|.|.|. |.+|+...+.+ +.+|++|++.++++... + +       +++.|..... ......++  -...+|+|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqla-k~~G~~vi~~~~~~~~~-~-~-------~~~lGa~~~i-~~~~~~~~~~~~~g~D~v   95 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKL-A-L-------PLALGAEEAA-TYAEVPERAKAWGGLDLV   95 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGS-H-H-------HHHTTCSEEE-EGGGHHHHHHHTTSEEEE
T ss_pred             CCCEEEEEeccccchhhhhhhh-ccccccccccccccccc-c-c-------ccccccceee-ehhhhhhhhhcccccccc
Confidence            5789999995 99999999975 89999999998876432 1 1       1222322211 11111111  13457877


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~a  272 (398)
                      +-+..   ++   + .+.++.++++..++.++
T Consensus        96 ~d~~G---~~---~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          96 LEVRG---KE---V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EECSC---TT---H-HHHHTTEEEEEEEEEC-
T ss_pred             ccccc---hh---H-HHHHHHHhcCCcEEEEe
Confidence            76554   11   1 45677788888888774

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.04  E-value=0.095  Score=46.57  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|.||++.|-|-+ .||+++|++|+ ..|++|+..|++...
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            6999999999995 59999999985 789999999987643

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.03  E-value=0.13  Score=45.44  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++-|-|- +.||+++|++| ...|++|+..|++...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAM-VAEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999998 56999999998 4889999999987643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.97  E-value=0.081  Score=46.53  Aligned_cols=38  Identities=29%  Similarity=0.323  Sum_probs=33.8

Q ss_pred             cCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      |.||++.|.|-+. ||+++|+.| ...|++|+..+++...
T Consensus         3 l~gK~alItGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLF-AREGASLVAVDREERL   41 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            8999999999865 999999998 5899999999987654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.89  E-value=0.068  Score=47.56  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|.|- +.||+++|++| ...|++|+..|++...
T Consensus         2 rL~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRL-AEEGTAIALLDMNREA   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            589999999998 45999999998 4899999999987643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.86  E-value=0.13  Score=43.74  Aligned_cols=37  Identities=38%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~  201 (398)
                      .|.+|.|+|.|.||...+..+ +.+|+ +|++.|+++.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~a-k~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHH-Hhhcccceeeecccchh
Confidence            577999999999999888875 77887 89999998754

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.83  E-value=0.14  Score=44.65  Aligned_cols=72  Identities=13%  Similarity=0.194  Sum_probs=43.2

Q ss_pred             CCCeEEEEecChhHHHHHH----HHHhcC--CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-
Q 015895          164 KGQTVGVIGAGRIGSAYAR----MMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~----~la~~f--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~-  235 (398)
                      +-.+|||||+|.+|..+++    .+ +.+  +.+++ ++|++.... +.+.+.+       +...  ...+.+++|+++ 
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai-~~~~~~~~ivav~d~~~~~~-~~~~~~~-------~~~~--~~~~~~~~~l~~~   83 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAI-QQLSSQFQIVALYNPTLKSS-LQTIEQL-------QLKH--ATGFDSLESFAQY   83 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHH-HHTTTTEEEEEEECSCHHHH-HHHHHHT-------TCTT--CEEESCHHHHHHC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHH-HhcCCCeEEEEEEcCCHHHH-HHHHHhc-------cccc--ceeecchhhcccc
Confidence            3357999999986544443    33 233  57877 588877542 2222221       2111  123468999986 


Q ss_pred             -cCCEEEEccCC
Q 015895          236 -EADVISLHPVL  246 (398)
Q Consensus       236 -~aDiV~l~~Pl  246 (398)
                       +-|+|++++|.
T Consensus        84 ~~iD~V~i~tp~   95 (237)
T d2nvwa1          84 KDIDMIVVSVKV   95 (237)
T ss_dssp             TTCSEEEECSCH
T ss_pred             cccceeeccCCC
Confidence             46789999984

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.79  E-value=0.074  Score=47.45  Aligned_cols=43  Identities=19%  Similarity=0.139  Sum_probs=36.3

Q ss_pred             ccccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHH
Q 015895          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRL  203 (398)
Q Consensus       160 g~~l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~  203 (398)
                      ...|+||++.|.| .+.||+++|+.| ...|++|++.+++..+..
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~l-a~~Ga~Vvi~~~~~~~~~   56 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMEL-GRRGCKVIVNYANSTESA   56 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCchHHH
Confidence            3569999999999 589999999998 578999999888765443

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.78  E-value=0.13  Score=42.97  Aligned_cols=104  Identities=13%  Similarity=0.197  Sum_probs=57.1

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcC-CcEEEEEcCCh-----hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQ-----ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~f-G~~V~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      .+|+|+| .|-+|+++.|.| ... ..++.....+.     .+......    ..+  .+..........+.++....+|
T Consensus         2 ikVaIiGATGyvG~eLlrlL-~~HP~~ei~~l~~~s~~~~aGk~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~d   74 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYV-NRHPHMTITALTVSAQSNDAGKLISDLH----PQL--KGIVDLPLQPMSDVRDFSADVD   74 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-HHCTTEEEEEEEEETTCTTTTCBHHHHC----GGG--TTTCCCBEEEESCGGGTCTTCC
T ss_pred             cEEEEECcccHHHHHHHHHH-HhCCCCceEeeEeecccccccccccccc----ccc--ccccccccccchhhhhhhcccc
Confidence            4799999 599999999998 555 56665442211     11111100    001  1111111222234455568899


Q ss_pred             EEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       239 iV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      ++++++|.  +...-+   .-...+.|..+||.|.--=.+...
T Consensus        75 vvf~alp~--~~s~~~---~~~~~~~~~~vIDlSadfRl~~~~  112 (179)
T d2g17a1          75 VVFLATAH--EVSHDL---APQFLQAGCVVFDLSGAFRVNDRA  112 (179)
T ss_dssp             EEEECSCH--HHHHHH---HHHHHHTTCEEEECSSTTSSSCHH
T ss_pred             eeeccccc--hhHHHH---hhhhhhcCceeecccccccccccc
Confidence            99999994  222111   222345789999998654443333

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.74  E-value=0.44  Score=39.86  Aligned_cols=99  Identities=17%  Similarity=0.258  Sum_probs=57.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~f-G~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      .+|||+|. |-+|+++.+.|+ .+ ..++.+.-.+..  .......    ..+.  ..  . .....+.+++..++|+|+
T Consensus         2 ikVaIvGATGyvG~eLirlL~-~HP~~ei~~l~s~~~aG~~i~~~~----p~~~--~~--~-~~~~~~~~~~~~~~dvvf   71 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLK-NHPEAKITYLSSRTYAGKKLEEIF----PSTL--EN--S-ILSEFDPEKVSKNCDVLF   71 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHH-HCTTEEEEEEECSTTTTSBHHHHC----GGGC--CC--C-BCBCCCHHHHHHHCSEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHH-hCCCceEEEeeccccCCCcccccC----chhh--cc--c-cccccCHhHhccccceEE
Confidence            37999997 999999999984 43 456665533222  1111100    0010  10  0 112246778888999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~vde~a  281 (398)
                      +++|... ...+     .... .+..+||.|--==.+...
T Consensus        72 ~a~p~~~-s~~~-----~~~~-~~~~VIDlSadfRl~~~~  104 (176)
T d1vkna1          72 TALPAGA-SYDL-----VREL-KGVKIIDLGADFRFDDPG  104 (176)
T ss_dssp             ECCSTTH-HHHH-----HTTC-CSCEEEESSSTTTCSSHH
T ss_pred             EccccHH-HHHH-----HHhh-ccceEEecCccccccchh
Confidence            9999643 3332     2333 588999997643333333

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.72  E-value=0.063  Score=42.00  Aligned_cols=34  Identities=12%  Similarity=0.385  Sum_probs=30.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      -++|.|||.|.||-++|..+ ..+|.+|..+++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVI-KRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHH-Hhccccceeeehhc
Confidence            37899999999999999998 69999999998754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.69  E-value=0.2  Score=43.97  Aligned_cols=39  Identities=26%  Similarity=0.299  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|-|- +.||+++|++| ...|++|+..|++...
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l-~~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELF-AKEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            389999999997 56999999998 5889999999987643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.18  Score=44.59  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ..++||++.|.|. +.||+++|++|+ ..|++|++.+++...
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~~   46 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVGN   46 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            3499999999998 689999999995 789999999987643

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.47  E-value=0.12  Score=45.63  Aligned_cols=40  Identities=25%  Similarity=0.239  Sum_probs=34.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~  202 (398)
                      .|+||++-|.|- +.||+++|++| ...|++|+..|+...+.
T Consensus         2 rL~gKvalVTGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~~   42 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERF-AVEGADIAIADLVPAPE   42 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCchHH
Confidence            489999999998 46999999998 48999999999876543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.41  E-value=0.067  Score=42.08  Aligned_cols=33  Identities=15%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +++.|||.|.||-++|..+ ..+|++|..+++..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l-~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVY-SRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHH-HhhCcceeEEEecc
Confidence            6899999999999999998 69999999988654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.29  E-value=0.077  Score=47.33  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=35.1

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 015895          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (398)
Q Consensus       161 ~~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~  202 (398)
                      ++|+||++-|.|- +.||+++|++|+ ..|++|+..+++..+.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~   44 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDE   44 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcHHH
Confidence            4799999999986 779999999984 7899999999876543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.26  E-value=0.069  Score=41.39  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +++.|||.|.||-++|..+ ..+|.+|..+.+..
T Consensus        23 ~~v~IiGgG~ig~E~A~~l-~~~G~~Vtlve~~~   55 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAY-ANFGTKVTILEGAG   55 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CeEEEECCCccceeeeeee-cccccEEEEEEecc
Confidence            7899999999999999998 68999999997654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.25  E-value=0.085  Score=46.96  Aligned_cols=39  Identities=28%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|.|.+ .||+++|++| ...|++|+..+++...
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~l-a~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEF-AGFGAVIHTCARNEYE   44 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            6999999999985 5999999998 4889999999987654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.17  E-value=0.075  Score=43.64  Aligned_cols=91  Identities=18%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcC---CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~f---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      |-+|||||. |-+|+++.|.|. ..   -.++.++......- .        ......   .........++...++|++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~-~H~fp~~~l~~~~s~~s~G-~--------~~~~~~---~~~~~~~~~~~~~~~~d~~   67 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLE-ESTLPIDKIRYLASARSAG-K--------SLKFKD---QDITIEETTETAFEGVDIA   67 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHH-TCCSCEEEEEEEECGGGTT-C--------EEEETT---EEEEEEECCTTTTTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHH-cCCCCceEEEEeccccccc-c--------cccccC---Ccccccccchhhhhhhhhh
Confidence            458999998 999999999884 44   34555554322210 0        000000   0011112344567889999


Q ss_pred             EEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       241 ~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ++++|. ..+..+    .....++|..+||.|-
T Consensus        68 f~~~~~-~~s~~~----~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          68 LFSAGS-STSAKY----APYAVKAGVVVVDNTS   95 (154)
T ss_dssp             EECSCH-HHHHHH----HHHHHHTTCEEEECSS
T ss_pred             hhccCc-cchhhH----HhhhccccceehhcCh
Confidence            999983 222222    2234467999999875

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.12  E-value=0.099  Score=40.50  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      ..++++.|||-|.||-++|..+ ..+|.+|..+.+.+
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l-~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFF-NATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhcchhheEeeccc
Confidence            4579999999999999999998 68999999998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.08  Score=41.14  Aligned_cols=33  Identities=24%  Similarity=0.612  Sum_probs=30.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +++.|||-|.+|-++|..+ +.+|.+|..+++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l-~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVI-NGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHh-hccccEEEEEeecc
Confidence            6799999999999999998 68999999998765

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.01  E-value=0.078  Score=45.53  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      ||+|.|||-|.-|-..|..| ...|++|.+++...
T Consensus         1 ~KkV~IIGaG~aGL~aA~~L-a~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKL-KIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCCEEEEeCCC
Confidence            68999999999999999998 57899999998653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.99  E-value=0.37  Score=42.58  Aligned_cols=39  Identities=21%  Similarity=0.418  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|.|. +.||+++|++|+ ..|++|+..|++...
T Consensus         3 rL~gKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999997 569999999984 789999999987643

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.89  E-value=0.35  Score=41.17  Aligned_cols=136  Identities=18%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             HHHHHHHhcCCcEEEEEcCChhh---HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE-EccCCChhhhhhc
Q 015895          179 AYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS-LHPVLDKTTYHLI  254 (398)
Q Consensus       179 ~vA~~la~~fG~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~-l~~Plt~~T~~li  254 (398)
                      ..+++| ...|++|++=.-....   ..+.|        ..+|     .....+-++++.++|+|+ +..|...+    .
T Consensus        21 ~~vkkl-~~~G~~V~vE~gaG~~a~fsD~~Y--------~~aG-----A~i~~~~~~~~~~~diilkV~~P~~~e----~   82 (194)
T d1l7da2          21 EVVKKL-VGLGFEVIVEQGAGVGASITDDAL--------TAAG-----ATIASTAAQALSQADVVWKVQRPMTAE----E   82 (194)
T ss_dssp             HHHHHH-HHTTCEEEEETTTTGGGTCCHHHH--------HHTT-----CEEESSHHHHHSSCSEEEEEECCCCGG----G
T ss_pred             HHHHHH-HHCCCEEEEEcCcccccCCCHHHH--------HHhh-----hhcchhhhhhhhcccceeEecCCcccc----c
Confidence            345666 5789999875432211   01111        1122     333457789999999986 66776443    2


Q ss_pred             cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHH
Q 015895          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT  334 (398)
Q Consensus       255 ~~~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~EP~~~~~L~~~~nvilTPHia~~T~ea~~~~~~  334 (398)
                      +.+.+..||+|+++|..--  .....++.++|.+.++...++|....-    ++=-.+|      .+++.+.=+-.....
T Consensus        83 ~~~ei~~lk~g~~li~~l~--p~~~~~~~~~l~~~~it~~a~e~ipRi----sraQ~md------~Lssqa~iaG~~a~~  150 (194)
T d1l7da2          83 GTDEVALIKEGAVLMCHLG--ALTNRPVVEALTKRKITAYAMELMPRI----SRAQSMD------ILSSQSNLVAADASP  150 (194)
T ss_dssp             SCCGGGGSCTTCEEEEECC--GGGCHHHHHHHHHTTCEEEEGGGCCCS----GGGGGGC------HHHHHHHHGHHHHHH
T ss_pred             chhHhhhccCceEEEEecc--cccchhHHHHHHhcCceEEeeeccccc----CCCCccC------CcCcchhhhhHhHHH
Confidence            3457888999999998754  567788999999999999999876321    1111222      222222223345566


Q ss_pred             HHHHHHHHHH
Q 015895          335 LAALNVLGKI  344 (398)
Q Consensus       335 ~~~~ni~~~l  344 (398)
                      +++.++..++
T Consensus       151 ~~a~~l~~~~  160 (194)
T d1l7da2         151 LFAKNLLNFL  160 (194)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            7788888877

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.4  Score=43.25  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|.|. +.||+++|++|+ ..|++|++.+++...
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la-~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            499999999998 559999999984 789999999997654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=91.71  E-value=0.23  Score=44.32  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|-|- +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFV-AEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999997 789999999984 789999999997643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.69  E-value=0.057  Score=44.79  Aligned_cols=36  Identities=11%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~-V~~~d~~~~  200 (398)
                      .+|+|.|||-|.+|-+.|..| ...|++ |.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l-~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFL-ARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH-HHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHH-HHCCCCeEEEEEecCc
Confidence            578999999999999999998 578984 988987653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.60  E-value=0.55  Score=38.41  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~  201 (398)
                      =.|.+|.|+|.|.+|...+..+ +.+| .+|++.|+...+
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~-~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCCcHHHHHHHH-HHcCCceEEeecCcHHH
Confidence            3678999999999999999986 6787 589999988765

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.56  E-value=0.23  Score=43.87  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             cCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhH
Q 015895          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATR  202 (398)
Q Consensus       163 l~gktvGIIGlG~-IG~~vA~~la~~fG~~V~~~d~~~~~~  202 (398)
                      |+||++.|-|-+. ||+++|++|+ ..|++|+..+++....
T Consensus         2 L~gK~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~   41 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAE   41 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHH
Confidence            7899999988855 9999999984 8899999999875443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.53  E-value=0.079  Score=42.76  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCCh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  199 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~  199 (398)
                      +||+|.|||-|.+|-++|..|++ ....+|..+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            58999999999999999999843 2336899998765

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.32  Score=42.58  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.3

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      |.||++.|.|- +.||+++|+.| ...|++|+..|++...
T Consensus         4 l~gK~alITGas~GIG~aia~~l-a~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAF-AREGAKVIATDINESK   42 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            89999988886 78999999998 4789999999987643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.37  E-value=0.21  Score=43.51  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             cCCCeEEEEecCh---hHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          163 LKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       163 l~gktvGIIGlG~---IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      |+||++.|.|.+.   ||+++|+.| ...|++|+..+++.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l-~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHH-HHcCCEEEEEeCCH
Confidence            8999999999864   999999998 58999999998864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.1  Score=40.98  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=30.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      |++.|||.|.||-++|..+ ..+|.+|..+.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l-~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGIL-SALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHH-hcCCcEEEEEeecc
Confidence            6899999999999999998 69999999998764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.29  E-value=0.24  Score=43.65  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++-|.|- +.||+++|++| ...|++|+..|++...
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAY-VREGARVAIADINLEA   41 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHH-HHTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            389999999998 77999999998 4899999999987643

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.18  E-value=0.17  Score=44.69  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|.|- +.||+++|++| ...|++|+..|++...
T Consensus         3 rL~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~   42 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLL-LGEGAKVAFSDINEAA   42 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECSCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999996 56999999998 4899999999987643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.09  E-value=0.17  Score=46.51  Aligned_cols=34  Identities=15%  Similarity=0.100  Sum_probs=27.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      |.+.|.| .|-||+.+++.| ...|.+|++.|+..+
T Consensus         2 K~vLITGatGfiGs~lv~~L-l~~g~~V~~~~r~~~   36 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFL-LEKGYEVHGIKRRAS   36 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECC---
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCcCEEEEEECCCc
Confidence            5677888 799999999998 578999999998653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.08  E-value=0.08  Score=41.64  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=28.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      +++.|||-|.||-++|..+ ..+|.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l-~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFL-AGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHH-hhcCCeEEEEEec
Confidence            5799999999999999998 6999999888754

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.01  E-value=0.16  Score=42.14  Aligned_cols=99  Identities=19%  Similarity=0.143  Sum_probs=55.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~  243 (398)
                      .+|+|+|+ |+||+.+++.+...-++++. ++++...+....   ..+   .-.+....+.....++++++..+|+|+=-
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~---d~~---~~~~~~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAG---ELAGAGKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTT---CSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc---hhh---hhhccccCCceeeccHHHHhcccceEEEe
Confidence            47999995 99999999987555578764 445543321100   000   00111112223345778889999998744


Q ss_pred             cCCChhhhhhccHHHHhcCCCCcEEEEcCCCc
Q 015895          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (398)
Q Consensus       244 ~Plt~~T~~li~~~~~~~mk~gailIN~aRG~  275 (398)
                      ..- +.+...+.    ...+.+.-+|-.++|=
T Consensus        79 s~p-~~~~~~~~----~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          79 TRP-EGTLNHLA----FCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             SCH-HHHHHHHH----HHHHTTCEEEECCCCC
T ss_pred             ccH-HHHHHHHH----HHHhccceeEEecCCC
Confidence            321 23333332    1234466777777774

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.98  E-value=2.1  Score=35.33  Aligned_cols=113  Identities=19%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhc--CCc----EEEEEcCChhhH-HHHHHhhhhhhhhhcCC-CCccccccCCHHHHhhc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~--fG~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~sl~ell~~  236 (398)
                      .+|.|+|. |.||+.++-+|+.+  ||.    .+..+|...... ++...-.    +.+... .........+..+.++.
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~md----l~d~a~~~~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME----LEDSLYPLLREVSIGIDPYEVFED  100 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhh----hcccccccccCccccccchhhccC
Confidence            47999996 99999999887542  453    677778765432 2211100    111111 11122234678899999


Q ss_pred             CCEEEEccCC--Ch-hhh-hhc--c-------HHHHhc-CCCCcEEEEcCCCchhcHHHHHH
Q 015895          237 ADVISLHPVL--DK-TTY-HLI--N-------KERLAT-MKKEAILVNCSRGPVIDEVALVE  284 (398)
Q Consensus       237 aDiV~l~~Pl--t~-~T~-~li--~-------~~~~~~-mk~gailIN~aRG~~vde~aL~~  284 (398)
                      ||+|++..-.  .+ +|+ .++  |       .+.+.. .+++++++=++.  .+|.-+++.
T Consensus       101 aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         101 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            9999887532  22 122 222  1       123434 577887877764  688888764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=90.90  E-value=0.23  Score=40.78  Aligned_cols=37  Identities=14%  Similarity=0.034  Sum_probs=30.7

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|.+|.|.|. |.+|+.+++.+ +.+|++|++.+++..+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqla-k~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHHH-HHhCCeEeecccchHH
Confidence            4789999955 55999999874 8999999999988754

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.90  E-value=0.15  Score=45.16  Aligned_cols=39  Identities=21%  Similarity=0.269  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++-|-|- +.||+++|++| ...|++|+..+++...
T Consensus         8 ~L~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITF-ATAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHH-HTTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            589999999998 56999999998 4889999999987643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.85  E-value=0.13  Score=40.24  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      ++++.|||-|.+|-++|..| ...|.+|..+++...
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l-~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATA-RTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHh-hcccceEEEEeeccc
Confidence            57999999999999999998 689999999987653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.82  E-value=0.13  Score=40.31  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=31.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      ..+|++.|||.|.+|-++|..+ ..+|.+|...++..
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l-~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAF-AKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHh-hccceEEEEEEecC
Confidence            4568999999999999999998 68999999997754

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.21  Score=47.76  Aligned_cols=99  Identities=18%  Similarity=0.185  Sum_probs=59.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh--H-HHHH-----------HhhhhhhhhhcCCC-Ccc-cc
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--R-LEKF-----------VTAYGQFLKANGEQ-PVT-WK  225 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~--~-~~~~-----------~~~~~~~~~~~~~~-~~~-~~  225 (398)
                      |++++|.|||+|.+|.++++.|+ ..|. ++..+|...-.  . -+++           .+....++...... .+. ..
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~-~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLA-LSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHH-TTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HhcCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            68899999999999999999985 4555 68888864311  0 0110           00000111111100 000 00


Q ss_pred             -c-cCCHHHHhhcCCEEEEccCCChhhhhhccHHHHhcCC
Q 015895          226 -R-ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (398)
Q Consensus       226 -~-~~sl~ell~~aDiV~l~~Plt~~T~~li~~~~~~~mk  263 (398)
                       . ...-+++++++|+|+.++- +.+++..+|+..+...|
T Consensus       114 ~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         114 NKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             SCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             ccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence             0 1123578899999998886 56789999887766544

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.65  E-value=0.3  Score=42.34  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      |+||++.|.|- +.||+++|++| ...|++|+..|++.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l-~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVL-SQEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHH
Confidence            78999999998 56999999998 588999999998764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.65  E-value=0.31  Score=40.37  Aligned_cols=95  Identities=19%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHh-----hc
Q 015895          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVL-----RE  236 (398)
Q Consensus       164 ~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-l~ell-----~~  236 (398)
                      .|.+|.|.|. |.+|+..++. ++..|++|++.+++....  ++       ++..+..........+ .+.++     ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiql-ak~~Ga~vi~~~~~~~~~--~~-------~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKI--AY-------LKQIGFDAAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEESSHHHH--HH-------HHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHH-HHccCCEEEEeCCCHHHH--HH-------HHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence            5889999998 6699998887 589999999998876532  11       2223332221111122 33332     34


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG  274 (398)
                      .|+|+-++.  .++    -++.++.++++..++.++..
T Consensus        99 vd~v~D~vG--~~~----~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2          99 YDCYFDNVG--GEF----LNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             EEEEEESSC--HHH----HHHHGGGEEEEEEEEECCCG
T ss_pred             CceeEEecC--chh----hhhhhhhccCCCeEEeecce
Confidence            889888885  232    25778899999999998753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.63  E-value=0.24  Score=43.57  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|.||++.|.|- +.||+++|+.| ...|++|+.+|++...
T Consensus         7 ~lenKvalITGas~GIG~a~a~~l-a~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKML-AKSVSHVICISRTQKS   46 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHH-TTTSSEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHH
Confidence            588999999998 57999999998 5889999999987654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.62  E-value=0.13  Score=40.10  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +++.|||-|.||-++|..+ ..+|++|....+..
T Consensus        23 ~~i~IiG~G~ig~E~A~~l-~~~G~~Vtiv~~~~   55 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVW-ARLGAEVTVLEAMD   55 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHH-HHcCCceEEEEeec
Confidence            7899999999999999998 68999998887554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.44  E-value=0.43  Score=41.85  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|-|- +.||+++|++| ...|++|+..+++...
T Consensus         3 rL~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~   42 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKF-VEEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999996 66999999998 4889999999987643

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.43  E-value=0.2  Score=41.98  Aligned_cols=95  Identities=20%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc-----
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----  236 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~-----  236 (398)
                      .+.+|.|.| .|.+|+..++.+ +.+|++ |++.+.+.+.....        ....+..........++.+.+++     
T Consensus        30 ~~etVLI~gaaGgVG~~aiQla-k~~Ga~~vi~~~~~~e~~~~l--------~~~~gad~vi~~~~~~~~~~~~~~~~~G  100 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIG-HLLGCSRVVGICGTQEKCLFL--------TSELGFDAAVNYKTGNVAEQLREACPGG  100 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHH-HHTTCSEEEEEESSHHHHHHH--------HHHSCCSEEEETTSSCHHHHHHHHCTTC
T ss_pred             CCCEEEEECCCchhhHHHHHHH-HHcCCcceecccchHHHHhhh--------hhcccceEEeeccchhHHHHHHHHhccC
Confidence            347899999 599999999984 899985 55556554432211        11223332222233456666555     


Q ss_pred             CCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       237 aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      .|+|+-++..  ++    -...++.++++..++.++.
T Consensus       101 vDvv~D~vGg--~~----~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         101 VDVYFDNVGG--DI----SNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             EEEEEESSCH--HH----HHHHHTTEEEEEEEEEC--
T ss_pred             ceEEEecCCc--hh----HHHHhhhccccccEEEecc
Confidence            8999988752  21    2567899999999999864

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=90.39  E-value=0.2  Score=40.77  Aligned_cols=75  Identities=17%  Similarity=0.370  Sum_probs=51.2

Q ss_pred             cCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       163 l~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      |.|++|++||=   +++.++.+..+ ..||+++....|..-...+...+.    ....+   ..+....++++.++.+|+
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~-~~~g~~~~~~~P~~~~~~~~~~~~----~~~~~---~~~~~~~d~~~av~~aDv   73 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVEE----LREKG---MKVVETTTLEDVIGKLDV   73 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHHH----HHHTT---CCEEEESCTHHHHTTCSE
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHH-HhcCCcEEEEccchhhcchHHHHH----HHhhc---ccceeecCHHHhhccCcE
Confidence            78999999998   68999999986 689999999987542211111110    11111   122335689999999999


Q ss_pred             EEEccC
Q 015895          240 ISLHPV  245 (398)
Q Consensus       240 V~l~~P  245 (398)
                      |....-
T Consensus        74 vy~~~~   79 (157)
T d1ml4a2          74 LYVTRI   79 (157)
T ss_dssp             EEECCC
T ss_pred             EEeecc
Confidence            876554

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.33  E-value=0.15  Score=41.36  Aligned_cols=91  Identities=13%  Similarity=0.131  Sum_probs=50.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~-~f-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l  242 (398)
                      ++|||||. |-+|+++.+.|.+ .+ ..++.....+...-         ..+.... ......  ..-.+.+.++|++++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G---------k~i~~~~-~~~~~~--~~~~~~~~~~d~vf~   70 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG---------QRMGFAE-SSLRVG--DVDSFDFSSVGLAFF   70 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT---------CEEEETT-EEEECE--EGGGCCGGGCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC---------cceeecc-ccchhc--cchhhhhccceEEEe
Confidence            57999998 9999999998842 33 34555543322110         0000000 000011  112344789999999


Q ss_pred             ccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       243 ~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                      ++|. ..+..+. ..   ..+.|.++||.|.
T Consensus        71 a~p~-~~s~~~~-~~---~~~~g~~VID~Ss   96 (144)
T d2hjsa1          71 AAAA-EVSRAHA-ER---ARAAGCSVIDLSG   96 (144)
T ss_dssp             CSCH-HHHHHHH-HH---HHHTTCEEEETTC
T ss_pred             cCCc-chhhhhc-cc---cccCCceEEeech
Confidence            9984 2222222 22   2357899999765

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.30  E-value=0.37  Score=42.33  Aligned_cols=40  Identities=20%  Similarity=0.166  Sum_probs=32.3

Q ss_pred             cccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       161 ~~l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +.|.||++.|.|-+ .||+++|+.| ...|++|+..+++...
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~l-a~~G~~Vvi~~~~~~~   42 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIEL-GRRGASVVVNYGSSSK   42 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEcCCChH
Confidence            46999999999984 5999999998 5899999875544433

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=90.27  E-value=0.15  Score=44.78  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=33.4

Q ss_pred             cCCCeEEEEec-Ch--hHHHHHHHHHhcCCcEEEEEcCChhhH
Q 015895          163 LKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQATR  202 (398)
Q Consensus       163 l~gktvGIIGl-G~--IG~~vA~~la~~fG~~V~~~d~~~~~~  202 (398)
                      |+||++.|.|. |.  ||+++|++| ..-|++|+..+++..+.
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~l-a~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHH-HHTTCEEEEEECSCHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH-HHcCCEEEEEeCChHHH
Confidence            89999999996 54  999999998 58999999998876543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.25  E-value=0.089  Score=41.34  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=30.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +++.|||.|-||-++|..+ ..+|++|....+..
T Consensus        26 ~~~viiG~G~iglE~A~~~-~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVW-GRIGSEVTVVEFAS   58 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CeEEEEccchHHHHHHHHH-HhcCCeEEEEEEcc
Confidence            6899999999999999998 69999999997754

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.25  Score=43.41  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +.||++.|.|- +.||+++|+.|+ ..|++|+..|++...
T Consensus         1 i~GKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            46999999998 569999999984 789999999998754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=89.90  E-value=0.42  Score=42.04  Aligned_cols=37  Identities=16%  Similarity=-0.015  Sum_probs=31.1

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +|+||++-|.|-+ .||.++|+.+ ...|++|+..+++.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~l-a~~G~~vii~~r~~   39 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSREL-VKRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHH-HHTCCSEEEEEESS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEEECCc
Confidence            5899999999996 5999999998 48899877775544

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.84  E-value=0.19  Score=41.95  Aligned_cols=69  Identities=14%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhcCCEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sl~ell~~aDiV  240 (398)
                      +||.|.| .|.||+.++++|. .-|  ..|+...|.++.....         . .+..-.  ......++.++++.+|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll-~~g~~v~v~~~~R~~~~~~~~---------~-~~~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGKEKI---------G-GEADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHH-HTTTTCEEEEEESCHHHHHHT---------T-CCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHH-HCCCcEEEEEEcCCHHHHHhc---------c-CCcEEEEeeeccccccccccccceee
Confidence            5899999 6999999999984 556  4566666665432110         0 010000  011123456778899999


Q ss_pred             EEccC
Q 015895          241 SLHPV  245 (398)
Q Consensus       241 ~l~~P  245 (398)
                      +.+..
T Consensus        73 i~~a~   77 (252)
T d2q46a1          73 VILTS   77 (252)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            87654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=89.83  E-value=0.21  Score=40.86  Aligned_cols=62  Identities=26%  Similarity=0.382  Sum_probs=45.4

Q ss_pred             CCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEE
Q 015895          164 KGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (398)
Q Consensus       164 ~gktvGIIGl---G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV  240 (398)
                      .|.+|++||=   +++..+.+..+ ..||+++....|..-.. +                ...+....+++|.++.+|+|
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~-~~~g~~~~i~~P~~~~~-~----------------~~~~~~~~~~~ea~~~aDvi   63 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQD-E----------------ENTFGTYVSMDEAVESSDVV   63 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH-HHcCCcccccCCchhhc-c----------------ccceeEEEechhccccCcee
Confidence            5889999996   68999999987 68999998887743110 0                01122346889999999998


Q ss_pred             EEc
Q 015895          241 SLH  243 (398)
Q Consensus       241 ~l~  243 (398)
                      ..-
T Consensus        64 y~~   66 (151)
T d2at2a2          64 MLL   66 (151)
T ss_pred             eee
Confidence            654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.71  E-value=0.19  Score=39.10  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=30.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      ++++.|||-|.+|-++|..| ..+|.+|..+++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNL-AEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHh-hcccceEEEEeccc
Confidence            36899999999999999998 68999999998754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.68  E-value=0.13  Score=40.54  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=30.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +++.|||.|-||-++|..+ ..+|.+|....+..
T Consensus        27 ~~vvIiGgG~IG~E~A~~~-~~~G~~Vtive~~~   59 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVY-STLGSRLDVVEMMD   59 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHh-hcCCCEEEEEEeec
Confidence            6899999999999999998 69999999997754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.63  E-value=0.38  Score=42.62  Aligned_cols=39  Identities=18%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++-|.|- +.||+++|++| ...|++|+..+++...
T Consensus         2 rL~gK~alVTGas~GIG~aia~~l-a~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILF-AQEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            489999999998 66999999998 4899999999987653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.21  Score=42.01  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      ....+|+|.|||-|..|-+.|..| ...|++|..|+...
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~l-a~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINA-AARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHH-HhhccceEEEeccC
Confidence            457789999999999999999997 58999999999765

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.55  E-value=0.15  Score=40.68  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=23.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY  194 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~  194 (398)
                      ++|||+|+ |+||+.+++.+ ...|+++.+
T Consensus         1 mki~i~G~~GrMG~~i~~~~-~~~~~~l~~   29 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVF-SEKGHELVL   29 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-hcCCCeEEE
Confidence            47999996 99999999986 677887653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.28  Score=43.50  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=32.5

Q ss_pred             CCCeEEEE--ecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGII--GlG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      +||+|.||  |-+-||.++|+.|++..|++|+.++|+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48999988  778999999999865568999999998754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.38  E-value=2.3  Score=34.16  Aligned_cols=38  Identities=26%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG-~~V~~~d~~~~~  201 (398)
                      -.|.+|.|+|.|.+|...+..+ +.+| .+|++.|+...+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~-~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHH-HHHhhchheeecchHHH
Confidence            4678999999999999999886 4555 589999988754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.27  E-value=0.6  Score=37.92  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 015895          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~~~  201 (398)
                      -.|.+|.|.|.|-+|...++.+ +.+|+ +|++.|++...
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~a-k~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEecchhHHHHHHHHH-HHHhcCceEEEcccHHH
Confidence            3577999999999999999985 78885 67777776644

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.10  E-value=0.32  Score=44.08  Aligned_cols=93  Identities=15%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-c--ccccCCHHHHhhcCCEE
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T--WKRASSMDEVLREADVI  240 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~sl~ell~~aDiV  240 (398)
                      .|||.|+|. |.||+.+++.| ...|.+|.+..|+++.........      ..+.... +  ......++.++..+|.+
T Consensus         3 kktIlVtGatG~iG~~lv~~L-l~~G~~V~~l~R~~~~~~~~~~~~------~~~v~~~~gD~~d~~~~~~~a~~~~~~~   75 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKGLIAEELQA------IPNVTLFQGPLLNNVPLMDTLFEGAHLA   75 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCSHHHHHHHT------STTEEEEESCCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHH-HhCCCeEEEEECCcchhhhhhhcc------cCCCEEEEeeCCCcHHHHHHHhcCCceE
Confidence            579999995 99999999998 578999999877654422111100      0011000 0  00111256788899999


Q ss_pred             EEccCCChh-----hhhhccHHHHhcCCC
Q 015895          241 SLHPVLDKT-----TYHLINKERLATMKK  264 (398)
Q Consensus       241 ~l~~Plt~~-----T~~li~~~~~~~mk~  264 (398)
                      ++..+....     +..++++..-+..++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~aa~~agv~~  104 (350)
T d1xgka_          76 FINTTSQAGDEIAIGKDLADAAKRAGTIQ  104 (350)
T ss_dssp             EECCCSTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred             EeecccccchhhhhhhHHHHHHHHhCCCc
Confidence            887765432     344555444444443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.00  E-value=0.095  Score=46.01  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=31.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~-~V~~~d~~~  199 (398)
                      .|++++|.|||+|.+|..+|+.|+ ..|. ++..+|...
T Consensus        27 kL~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCcc
Confidence            499999999999999999999985 6675 788888654

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.52  Score=38.38  Aligned_cols=101  Identities=18%  Similarity=0.352  Sum_probs=59.9

Q ss_pred             cCCCeEEEEec---ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCC
Q 015895          163 LKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       163 l~gktvGIIGl---G~IG~~vA~~la~~fG-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aD  238 (398)
                      +.|.+|++||=   |++..+....+ ..|| ..+++..|..-...+...+    ..+..+   ..+....++++.++++|
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l-~~~~~~~~~~~~P~~~~~~~~~~~----~~~~~~---~~~~~~~d~~~a~~~aD   73 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKG---IAWSLHSSIEEVMAEVD   73 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEECSCSTTTGGGCS
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHH-HHcCCCeEEeeccchhhhhHHHHH----HHhhhc---cccccccCHHHHhCcCc
Confidence            67999999996   77999999986 6886 4556665542211111000    111222   22333568899999999


Q ss_pred             EEEEccCCChh----------hhhhccHHHHhcCCCCcEEEEc
Q 015895          239 VISLHPVLDKT----------TYHLINKERLATMKKEAILVNC  271 (398)
Q Consensus       239 iV~l~~Plt~~----------T~~li~~~~~~~mk~gailIN~  271 (398)
                      +|..---....          .+..++++.++.+++++++.-|
T Consensus        74 vvy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHc  116 (160)
T d1ekxa2          74 ILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  116 (160)
T ss_dssp             EEEECCCCGGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECC
T ss_pred             eEEeecccccccchHHHHHHHHHhhccHHHHHhcCcceeeecC
Confidence            99754332211          1122345666677777777766

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.92  E-value=0.29  Score=42.81  Aligned_cols=81  Identities=14%  Similarity=0.112  Sum_probs=47.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc--ccccCCHHHHhhcCCEEEE
Q 015895          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISL  242 (398)
Q Consensus       166 ktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sl~ell~~aDiV~l  242 (398)
                      ++|.|.| .|.||+.+++.| ...|.+|++.+|............. ......+.....  .....++.+.++.+|.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCcccchhHHHHH-hhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            4699999 599999999998 5789999999886532110000000 001111111000  1112346677899999988


Q ss_pred             ccCCCh
Q 015895          243 HPVLDK  248 (398)
Q Consensus       243 ~~Plt~  248 (398)
                      +.+...
T Consensus        82 ~~~~~~   87 (312)
T d1qyda_          82 ALAGGV   87 (312)
T ss_dssp             CCCCSS
T ss_pred             hhhhcc
Confidence            876543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=88.84  E-value=0.59  Score=40.87  Aligned_cols=38  Identities=26%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      |+||++.|-|- +.||+++|++| ..-|++|+..|++.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~l-a~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAF-AREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSTTH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHH
Confidence            89999999994 78999999998 4889999999987643

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=88.79  E-value=2  Score=35.32  Aligned_cols=111  Identities=14%  Similarity=0.052  Sum_probs=69.4

Q ss_pred             CCCeEEEEeCC---CCch---HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-CCcEEEecCCcc----ccHHHHHH
Q 015895           13 NGKYRVVSTKP---MPGT---RWINLLIEQDCRVEICTQKKTILSVEDIIALIGD-KCDGVIGQLTED----WGETLFAA   81 (398)
Q Consensus        13 ~~~~kvlv~~~---~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~eel~~~~~~-~~d~vi~~~~~~----~~~~~l~~   81 (398)
                      ..++|||+...   .++.   .....|+..|++|....   ...++|++.+...+ ++|+|.+.+...    .-+++.+.
T Consensus        35 gr~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg---~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~  111 (168)
T d7reqa2          35 GRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGP---LFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKE  111 (168)
T ss_dssp             SSCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECC---TTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCC---CcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHH
Confidence            35678888643   3431   12345677898876532   23588888865543 699988765422    22456677


Q ss_pred             hhccCC-ceEEEeeccccccCchHhhhcCceEEecCCCCCchHHHH
Q 015895           82 LSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAEL  126 (398)
Q Consensus        82 ~~~l~~-k~i~~~g~G~d~iD~~~~~~~gI~V~n~p~~~~~~vAE~  126 (398)
                      |.++|. .+....|--+-.-|.+...+.|+.-+-.||.+...+|..
T Consensus       112 L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~~  157 (168)
T d7reqa2         112 LDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAIS  157 (168)
T ss_dssp             HHHTTCTTSEEEEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHHH
T ss_pred             HHhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEEECcCCCHHHHHHH
Confidence            777664 344444333467788888999999888999754444433

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.73  E-value=0.22  Score=43.30  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      |+|.|.|. |-||+.+++.| ...|.+|++.|+..
T Consensus         2 MKIlItGasGfiG~~l~~~L-~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEeechh
Confidence            57999997 99999999998 78999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.59  E-value=0.19  Score=38.73  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +++.|||-|.+|-++|..+ ..+|.+|..+++..
T Consensus        22 ~~vvIiGgG~~G~E~A~~l-~~~g~~Vtlve~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAY-RKLGAQVSVVEARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHH-hhcccceEEEeeec
Confidence            7899999999999999998 68999999987754

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.35  E-value=0.53  Score=38.14  Aligned_cols=112  Identities=19%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             eEEEEe-cChhHHHHHHHHHh--cCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCC-CCccccccCCHHHHhhcCC
Q 015895          167 TVGVIG-AGRIGSAYARMMVE--GFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREAD  238 (398)
Q Consensus       167 tvGIIG-lG~IG~~vA~~la~--~fG----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~sl~ell~~aD  238 (398)
                      +|.||| .|.+|+.+|-.|+.  -|+    ..+..||.........-.+   -....... .........+..+.+++||
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d   81 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVL---MELQDCALPLLKDVIATDKEEIAFKDLD   81 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHH---HHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhh---hhhcccccccccccccCcccccccCCce
Confidence            799999 59999999987742  122    3678888765442211100   00011111 1111223456788999999


Q ss_pred             EEEEccC--CCh-hhh-hhc--c----H---HHH-hcCCCCcEEEEcCCCchhcHHHHH
Q 015895          239 VISLHPV--LDK-TTY-HLI--N----K---ERL-ATMKKEAILVNCSRGPVIDEVALV  283 (398)
Q Consensus       239 iV~l~~P--lt~-~T~-~li--~----~---~~~-~~mk~gailIN~aRG~~vde~aL~  283 (398)
                      +|++...  ..+ +|+ .++  |    +   +.+ +..++..++|.++  .++|.-+.+
T Consensus        82 vVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs--NPvD~mt~v  138 (154)
T d5mdha1          82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG--NPANTNCLT  138 (154)
T ss_dssp             EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHH
T ss_pred             EEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec--CcHHHHHHH
Confidence            9998763  222 122 111  1    1   123 3346566677765  357766644

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.28  E-value=0.19  Score=44.68  Aligned_cols=39  Identities=18%  Similarity=0.163  Sum_probs=33.8

Q ss_pred             cccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       161 ~~l~gktvGIIGlG---~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .+|+||++.|-|.+   -||+++|++| ...|++|+..++...
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~l-a~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSL-AAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHH-HHTTCEEEEEEEHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHH-HHCCCEEEEEeCchh
Confidence            47999999999986   5999999998 488999998887654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.27  E-value=0.42  Score=41.29  Aligned_cols=35  Identities=20%  Similarity=0.169  Sum_probs=30.2

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      -|+|.|.|. |.||+.+++.| ...|.+|++.+|...
T Consensus         3 kkKILVtGatG~iG~~l~~~L-~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEECCCc
Confidence            468999996 99999999998 577999999998654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.27  E-value=0.45  Score=41.89  Aligned_cols=39  Identities=13%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .|+||++.|.|- +.||+++|++|+ ..|++|+..+++...
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFA-REGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999987 789999999984 889999999987653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.22  E-value=0.28  Score=38.80  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .++++.|||-|.+|-++|..+ ...|.+|..+++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l-~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATA-IKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHH-HhhCcceeeeeeccc
Confidence            367999999999999999998 688999999987653

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=87.98  E-value=0.58  Score=39.02  Aligned_cols=104  Identities=16%  Similarity=0.146  Sum_probs=63.7

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhc
Q 015895          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       162 ~l~gktvGIIGlG--~IG~~vA~~la~~fG~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~  236 (398)
                      .+.|.+|+++|=|  ++..+++..+ ..|||++.+..|..-   .........+   ....+   .......++++.++.
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~-~~~g~~l~~~~P~~~~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~   74 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRAL---AQQNG---GNITLTEDVAKGVEG   74 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHH---HHHTT---CEEEEESCHHHHHTT
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEEechHhhhhHHHHHHHHHH---HHhcC---CceEEEechhhcccc
Confidence            5788999999955  7999999986 579999999987421   1111111110   11111   123345689999999


Q ss_pred             CCEEEEccCCC----hh---h-------hhhccHHHHhcCCCCcEEEEcC
Q 015895          237 ADVISLHPVLD----KT---T-------YHLINKERLATMKKEAILVNCS  272 (398)
Q Consensus       237 aDiV~l~~Plt----~~---T-------~~li~~~~~~~mk~gailIN~a  272 (398)
                      +|+|..-.=..    .+   .       ...++......+++.+++.-|.
T Consensus        75 aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          75 ADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             CCEEEEEehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            99996533211    11   0       1123444555678888888874

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.75  E-value=0.46  Score=38.51  Aligned_cols=112  Identities=23%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhc--CC----cEEEEEcCChhhH-HHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhc
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEG--FK----MNLIYYDLYQATR-LEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~--fG----~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~ell~~  236 (398)
                      .+|.|+|. |.+|+.+|-.|+.+  ++    .....++...... .+.....    +.... ..........+..+.++.
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME----LEDCAFPLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----HHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh----hhccccccccccccCCchhhhccc
Confidence            47999996 99999999887421  22    1233344333221 1111000    11111 111122234567888999


Q ss_pred             CCEEEEccCC--Chh-hh-hhc--cH-------HHHhc-CCCCcEEEEcCCCchhcHHHHH
Q 015895          237 ADVISLHPVL--DKT-TY-HLI--NK-------ERLAT-MKKEAILVNCSRGPVIDEVALV  283 (398)
Q Consensus       237 aDiV~l~~Pl--t~~-T~-~li--~~-------~~~~~-mk~gailIN~aRG~~vde~aL~  283 (398)
                      ||+|++..-.  .+. ++ .++  |.       +.+.+ .+++++++.++.  ++|.-..+
T Consensus        81 advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~~  139 (154)
T d1y7ta1          81 ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNALI  139 (154)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred             ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHHH
Confidence            9999988632  221 22 222  11       12333 567888888864  57765543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=87.74  E-value=0.24  Score=41.97  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=30.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       165 gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      -|+|.|||.|-.|-+.|..| ...|.+|.++|+..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L-~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALIL-ARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            35799999999999999998 57899999999753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=87.58  E-value=0.33  Score=40.52  Aligned_cols=98  Identities=13%  Similarity=0.089  Sum_probs=56.4

Q ss_pred             CCCeEEEE--ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc---ccCC----HHHHh
Q 015895          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK---RASS----MDEVL  234 (398)
Q Consensus       164 ~gktvGII--GlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s----l~ell  234 (398)
                      .|.++.|+  |.|.+|+...+. ++.+|++|++.-+......+..     ..+++.|.......   ...+    ..++.
T Consensus        28 ~g~~vli~~ga~g~vG~~aiql-Ak~~Ga~vI~~v~~~~~~~~~~-----~~~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQI-GKLLNFNSISVIRDRPNLDEVV-----ASLKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHH-HHHHTCEEEEEECCCTTHHHHH-----HHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHH-HhhcCCeEEEEEecccccchHH-----hhhhhccccEEEeccccchhHHHHHHHHHH
Confidence            47789898  679999999997 4899999998765543221110     00122232221110   0011    12221


Q ss_pred             ----hcCCEEEEccCCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 015895          235 ----READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (398)
Q Consensus       235 ----~~aDiV~l~~Plt~~T~~li~~~~~~~mk~gailIN~aR  273 (398)
                          ...|+++-++..  ++    -...+..|+++..+|.++.
T Consensus       102 ~~~g~~vdvv~D~vg~--~~----~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         102 KQSGGEAKLALNCVGG--KS----STGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HHHTCCEEEEEESSCH--HH----HHHHHHTSCTTCEEEECCC
T ss_pred             hhccCCceEEEECCCc--ch----hhhhhhhhcCCcEEEEECC
Confidence                236888877641  21    1456788999999998753

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=87.30  E-value=0.42  Score=39.73  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      +|||=|||+||+.+.|.+...-..+|.+.+....
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~   36 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLD   36 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSC
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence            6999999999999999874444678777765433

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=87.08  E-value=0.22  Score=43.60  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      .-|+|.|||.|..|-..|..|+ ..|.+|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~-~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLA-GAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHH-HHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            4579999999999999999984 6799999998754

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=87.01  E-value=1.8  Score=35.89  Aligned_cols=96  Identities=16%  Similarity=0.211  Sum_probs=52.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~f-G~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      .+|||||. |-.|+++.|.| ... ..++.+......  ......   + .+...   ..... .....++.++.+|+++
T Consensus         6 ikVaIlGATGyvG~elirLL-~~HP~~ei~~l~S~~~aG~~~~~~---~-~~~~~---~~~~~-~~~~~~~~~~~~Dvvf   76 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLL-ANHPQFRIKVMTADRKAGEQFGSV---F-PHLIT---QDLPN-LVAVKDADFSNVDAVF   76 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHH-TTCSSEEEEEEECSTTTTSCHHHH---C-GGGTT---SCCCC-CBCGGGCCGGGCSEEE
T ss_pred             cEEEEECcccHHHHHHHHHH-HhCCCceEEEEeccccCCCccccc---c-ccccc---ccccc-chhhhhhhhcccceee
Confidence            46999997 99999999998 444 456655532221  111111   0 01110   11100 1122345678999999


Q ss_pred             EccCCChhhhhhccHHHHhcCCCCcEEEEcCCCch
Q 015895          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (398)
Q Consensus       242 l~~Plt~~T~~li~~~~~~~mk~gailIN~aRG~~  276 (398)
                      +++|....      .+....+.+....|+.+.+.-
T Consensus        77 ~alp~~~s------~~~~~~l~~~~~~v~~~~~~~  105 (183)
T d2cvoa1          77 CCLPHGTT------QEIIKGLPQELKIVDLSADFR  105 (183)
T ss_dssp             ECCSSSHH------HHHHHTSCSSCEEEECSSTTT
T ss_pred             eccccchH------HHHHHHHHhcCcccccchhhh
Confidence            99995322      233344555556666555443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.79  E-value=0.54  Score=41.15  Aligned_cols=35  Identities=34%  Similarity=0.281  Sum_probs=27.4

Q ss_pred             CeE-EEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          166 QTV-GVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       166 ktv-GIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      |+| .|-|- +.||+++|++|+ ..|++|+..|++...
T Consensus         1 KKValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDAT   37 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            344 55566 569999999985 789999999997643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.20  E-value=0.58  Score=40.03  Aligned_cols=45  Identities=27%  Similarity=0.398  Sum_probs=36.4

Q ss_pred             CCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       153 w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      |.+..+. ..-.+|+|.|||-|..|-..|..| ...|++|..++...
T Consensus        38 ~~p~~~~-~~~~~k~VvIIGaGpAGl~aA~~l-~~~G~~v~l~E~~~   82 (233)
T d1djqa3          38 WHPEKFR-QTKNKDSVLIVGAGPSGSEAARVL-MESGYTVHLTDTAE   82 (233)
T ss_dssp             CCSSCCC-CCSSCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCCCccC-cccCCceEEEEcccHHHHHHHHHH-HHhccceeeEeecc
Confidence            5554332 345889999999999999999997 57999999998754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.45  E-value=0.79  Score=40.04  Aligned_cols=36  Identities=19%  Similarity=0.132  Sum_probs=29.5

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       165 gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      ||.+.|-|- +.||+++|++|+ .-|++|+..+++...
T Consensus         2 gKValITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   38 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLG-KEGLRVFVCARGEEG   38 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            677777777 459999999984 789999999987643

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.07  E-value=0.3  Score=41.92  Aligned_cols=77  Identities=13%  Similarity=0.128  Sum_probs=47.9

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCE
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDi  239 (398)
                      ..+|+|.|.|. |-||+.+++.|. .-|  .+|++.+|++.........       ........+....++.+.++.+|+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll-~~g~~~~v~~~~R~~~~~~~~~~~-------~i~~~~~D~~~~~~~~~~~~~~d~   83 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEIL-EQGLFSKVTLIGRRKLTFDEEAYK-------NVNQEVVDFEKLDDYASAFQGHDV   83 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHH-HHTCCSEEEEEESSCCCCCSGGGG-------GCEEEECCGGGGGGGGGGGSSCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHH-hCCCCCEEEEEecChhhhcccccc-------eeeeeeeccccccccccccccccc
Confidence            56789999996 999999999874 445  4899998865432111000       000000011223456677899999


Q ss_pred             EEEccCCC
Q 015895          240 ISLHPVLD  247 (398)
Q Consensus       240 V~l~~Plt  247 (398)
                      ++.++..+
T Consensus        84 vi~~~~~~   91 (232)
T d2bkaa1          84 GFCCLGTT   91 (232)
T ss_dssp             EEECCCCC
T ss_pred             cccccccc
Confidence            98877543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=85.07  E-value=0.48  Score=40.46  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=30.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      ..++|.|||.|..|...|..| ...|.+|.++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L-~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALML-RDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            457899999999999999998 46799999999754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.99  E-value=0.43  Score=40.45  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             eEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChh
Q 015895          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQA  200 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~-~fG~~V~~~d~~~~  200 (398)
                      +|.|||-|.-|-+.|+.|++ ++|++|.+||..+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            79999999999999987753 58999999987653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=84.94  E-value=0.39  Score=40.12  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=23.8

Q ss_pred             CeEEEEecChhHHHHHHHHHh--cCCcEEEEE-cCC
Q 015895          166 QTVGVIGAGRIGSAYARMMVE--GFKMNLIYY-DLY  198 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~--~fG~~V~~~-d~~  198 (398)
                      .+|||=|||+||+.+.|.+..  ....+|++. |+.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~   36 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG   36 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC
Confidence            379999999999999997532  223666655 554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=84.90  E-value=0.38  Score=43.33  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=33.3

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+||+|.|.| .|-||+.+++.| ...|.+|+++|+..+.
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~L-l~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCCc
Confidence            5789999999 599999999998 6889999999987653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.89  E-value=0.46  Score=43.03  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=30.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       164 ~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      +.|+|.|||.|--|-.+|.+|+ ..|.+|++++.+.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~-k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLA-EKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-TTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHH-hCCCCEEEEECCC
Confidence            3689999999999999999984 6799999998765

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=84.87  E-value=1.3  Score=39.03  Aligned_cols=77  Identities=16%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEE
Q 015895          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (398)
Q Consensus       162 ~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~  241 (398)
                      ...|++|++||+-.    ..+++ +.-|+++.++|+++..                +.     .....-++++++||+|+
T Consensus       119 ~~~g~kV~vIG~~P----~v~~l-~~~~~~~~VlE~~p~~----------------gd-----~p~~~~~~lLp~aD~vi  172 (251)
T d2h1qa1         119 EVKGKKVGVVGHFP----HLESL-LEPICDLSILEWSPEE----------------GD-----YPLPASEFILPECDYVY  172 (251)
T ss_dssp             TTTTSEEEEESCCT----THHHH-HTTTSEEEEEESSCCT----------------TC-----EEGGGHHHHGGGCSEEE
T ss_pred             ccCCCEEEEEecch----hHHHH-HhcCCcEEEEeCCCCC----------------CC-----CCchHHHHhhhcCCEEE
Confidence            35799999998753    34444 4677899999987642                11     11124578899999988


Q ss_pred             EccCCChhhhhhcc---HHHHhcCCCCcEEEE
Q 015895          242 LHPVLDKTTYHLIN---KERLATMKKEAILVN  270 (398)
Q Consensus       242 l~~Plt~~T~~li~---~~~~~~mk~gailIN  270 (398)
                      +.-      .-++|   ...+++.|+.+.+|=
T Consensus       173 iTG------sTlvN~Tl~~LL~~~~~a~~vvl  198 (251)
T d2h1qa1         173 ITC------ASVVDKTLPRLLELSRNARRITL  198 (251)
T ss_dssp             EET------HHHHHTCHHHHHHHTTTSSEEEE
T ss_pred             EEe------chhhcCCHHHHHHhCCcCCEEEE
Confidence            653      12333   456777777765543

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=84.86  E-value=0.27  Score=41.00  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=24.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcC
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~  197 (398)
                      .+|||=|||+||+.+.|.+ ..-+.+|.+.+.
T Consensus         1 ikigINGfGRIGR~~~R~l-~~~~i~iv~INd   31 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRIL-HSRGVEVALIND   31 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHTCCEEEEEC
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEECC
Confidence            4799999999999999876 444666666543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.74  E-value=0.44  Score=38.15  Aligned_cols=27  Identities=30%  Similarity=0.624  Sum_probs=22.2

Q ss_pred             eEEEEe-cChhHHHHHHHHHhcCCcEEE
Q 015895          167 TVGVIG-AGRIGSAYARMMVEGFKMNLI  193 (398)
Q Consensus       167 tvGIIG-lG~IG~~vA~~la~~fG~~V~  193 (398)
                      +|+|+| .|+||+.+++.+.+.-++++.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~   28 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLS   28 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEE
Confidence            689999 699999999986556678765

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=84.27  E-value=0.47  Score=39.49  Aligned_cols=35  Identities=31%  Similarity=0.463  Sum_probs=25.8

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhh
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQAT  201 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~  201 (398)
                      +|||=|||+||+.+.|.+...-..+|++. |+....
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~   38 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL   38 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccH
Confidence            79999999999999997643335677666 544433

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.98  E-value=0.36  Score=42.05  Aligned_cols=38  Identities=18%  Similarity=0.109  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChh
Q 015895          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (398)
Q Consensus       162 ~l~gktvGIIGlG-~IG~~vA~~la~~fG~~V~~~d~~~~  200 (398)
                      .|+||++.|.|.+ .||+++|++| ...|++|+..++...
T Consensus         4 sl~gK~~lITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRL-AADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCcc
Confidence            5899999999986 5999999998 488999999998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=83.95  E-value=0.39  Score=40.81  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      ++|.|||-|..|-..|.+| ...|.+|++++...
T Consensus         1 m~V~IIGaG~aGL~aA~~L-~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHL-RSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHH-HTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCCEEEEecCC
Confidence            4799999999999999998 57899999998753

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.83  E-value=1.1  Score=40.16  Aligned_cols=37  Identities=32%  Similarity=0.385  Sum_probs=32.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       162 ~l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      .|+||++.|-|. +.||+++|+.| ...|++|++.|+..
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~l-a~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAF-AERGALVVVNDLGG   41 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECCCB
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCc
Confidence            589999999998 55999999998 48999999998764

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.54  E-value=0.57  Score=38.97  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             eEEEEecChhHHHHHHHHHh--cCCcEEEEEcCC
Q 015895          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYDLY  198 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~--~fG~~V~~~d~~  198 (398)
                      +|||=|||+||+.+.|.+..  ..+.+|++.+..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            69999999999999997632  335787766543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=83.51  E-value=0.29  Score=40.85  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=26.0

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhh
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQAT  201 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~  201 (398)
                      +|||=|||+||+.+.|.+ ...+.+|++. |+....
T Consensus         2 kIgINGfGRIGR~~~R~~-~~~~~~ivaINd~~~~~   36 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAA-LEMGAQVVAVNDPFIAL   36 (169)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHHTCCEEEEECTTSCH
T ss_pred             eEEEECCcHHHHHHHHHH-HhCCCcEEEECCCCcCH
Confidence            699999999999999986 4556776666 455443

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.83  E-value=0.43  Score=36.10  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=29.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       161 ~~l~gktvGIIGlG~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      .+.+||+|.|||.|+-|..+|.-| .....+++...++
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l-~~~ak~v~~~~~r   64 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHL-TPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHH-TTTSCSSEEEECT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHH-HHhcCEEEEEEec
Confidence            578999999999999999999987 4666665544443

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=82.79  E-value=2.9  Score=35.14  Aligned_cols=98  Identities=10%  Similarity=0.049  Sum_probs=64.2

Q ss_pred             HHHHHHhcCCcEEEEEcCChhh---HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhcCCEEEEccCCChhhhhhccH
Q 015895          180 YARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (398)
Q Consensus       180 vA~~la~~fG~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~T~~li~~  256 (398)
                      .+++| ...|++|++=.-....   ..+.|        ...|     .....+.++++ +||+|+..-|.++        
T Consensus        22 ~vkkl-~~~G~~V~VE~gaG~~a~fsD~~Y--------~~aG-----a~i~~~~~~~~-~~diilkv~~p~~--------   78 (193)
T d1pjca2          22 SVRTL-VEAGHTVFIETQAGIGAGFADQDY--------VQAG-----AQVVPSAKDAW-SREMVVKVKEPLP--------   78 (193)
T ss_dssp             HHHHH-HTTTCEEEEETTTTGGGTCCHHHH--------HHHT-----CEEESSHHHHH-TSSEEECSSCCCG--------
T ss_pred             HHHHH-HHCCCEEEEEcCcccccCCCHHHH--------Hhhc-----ceeeecccccc-ccceEEEeccCCH--------
Confidence            44556 5789999875433211   01111        1122     23345667776 5899976655433        


Q ss_pred             HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhcCCccEEEeccCCCC
Q 015895          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (398)
Q Consensus       257 ~~~~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gAalDV~~~E  302 (398)
                      +.++.||+|.++|-.-..  ....+++++|.+.++...++|.....
T Consensus        79 ~e~~~lk~~~~li~~l~p--~~~~ell~~l~~~~it~~s~E~ipr~  122 (193)
T d1pjca2          79 AEYDLMQKDQLLFTYLHL--AAARELTEQLMRVGLTAIAYETVELP  122 (193)
T ss_dssp             GGGGGCCTTCEEEECCCG--GGCHHHHHHHHHHTCEEEEGGGCCCT
T ss_pred             HHHHhhhcCceEEEecCc--ccchHHHHHHHHcCCEEEEeeecccc
Confidence            357789999999987653  45678999999999999999987543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=82.01  E-value=0.9  Score=40.81  Aligned_cols=32  Identities=28%  Similarity=0.237  Sum_probs=27.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~  198 (398)
                      |+|.|+|. |-||+.+++.| ...|.+|+++|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L-~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQL-LQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHH-HHCcCEEEEEECC
Confidence            46888886 99999999998 5789999999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.97  E-value=0.54  Score=41.68  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       163 l~gktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      |+||++-|-|. +.||+++|++|+ ..|++|+..|++...
T Consensus         2 L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   40 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNEDR   40 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            78999999998 569999999984 789999999987643

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=81.62  E-value=0.61  Score=38.86  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcC
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~d~  197 (398)
                      +|||=|||+||+.+.|.+...-..+|.+.+.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd   33 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence            6999999999999999864343577776654

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=81.54  E-value=1  Score=37.36  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=23.9

Q ss_pred             eEEEEecChhHHHHHHHHHh---cCCcEEEEEcCC
Q 015895          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDLY  198 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~---~fG~~V~~~d~~  198 (398)
                      +|||=|||+||+.+.|.+..   .-..+|++.+..
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~   37 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL   37 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC
Confidence            69999999999999998632   124677766543

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.05  E-value=0.73  Score=38.11  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=26.4

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhh
Q 015895          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQAT  201 (398)
Q Consensus       167 tvGIIGlG~IG~~vA~~la~~fG~~V~~~-d~~~~~  201 (398)
                      +|||=|||+||+.+.|.+...-..+|.+. |+....
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~   37 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDL   37 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCH
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCCh
Confidence            69999999999999998743336787776 455443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.34  E-value=0.86  Score=40.62  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=28.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 015895          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (398)
Q Consensus       166 ktvGIIGl-G~IG~~vA~~la~~fG~~V~~~d~~~  199 (398)
                      |+|.|.|. |-||+.+++.| ...|.+|++.|+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L-~~~g~~V~~~d~~~   35 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKL-MMDGHEVTVVDNFF   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCC
Confidence            67889986 89999999998 57899999998643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.02  E-value=0.59  Score=42.39  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 015895          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (398)
Q Consensus       164 ~gktvGIIG-lG~IG~~vA~~la~~fG~~V~~~d~~~~~  201 (398)
                      .+|+|.|.| .|-||+.+++.| ..-|.+|+++|+....
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L-~~~g~~V~~~d~~~~~   51 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRL-KHEGHYVIASDWKKNE   51 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEeCCCcc
Confidence            788999999 599999999998 5789999999876543