Citrus Sinensis ID: 015940

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MYLSEKPRPYLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGVT
ccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccEEEEEccccEEEEcccccHHHHHHHHHHHHccccccEEccccccHHHHHcccccccccEEEEcccccEEEEEEccccccccccccccccccHHHHHHHHHHHcccccEEccccccccccccccccccccccc
ccccccccccccccccccccccccHccccccHHHcccccccEEEEEccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHccccccccccccccccccccccccccHHcccccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccEEEcccccHHHHHHHHHHHHccHHHHHHHHHcHHHHEEEccccccccEEEEEccccEEEEEEEccccccccccccccEEEcHHHHHHHHHHcccEEEEEcccccccccHHccccccEEEccc
mylsekprpyltekprpidyyKDEAVAAAAAAAAAASSRDMIMEVAAasngelqpqqmiladssggedhevrapkkraeTWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMRekgfdrsptmctDKWRNLLKEFKktkhqdrgsgsakMSYYKEIDEILKERSKNAQYKATsvansankvdtfmqfsdkgfddtsisfgpveatgrptlnlerrldhdghplaITTADAVAaagvppwnwrdpppgngnlcgegqsfggkvisvkcgdytrrigidgtPDAIKEAIKSAFGIRTkrafwledEDQIVRCidrdmpvgnytlhldegltIKVClydesdhisvhtedktfytEEDYREFLARHGWtclrefdgyrnvdnmddlrpgamyrgvt
mylsekprpyltekprpiDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQMILADSSGGEDHEvrapkkraetwvqdETRILIAFRREMDGLFNTSKSNKHLWEQISAKmrekgfdrsptmctDKWRNLLKefkktkhqdrgsgsakmsYYKEIDEILKERSKNAqykatsvansankvDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRrigidgtpdaIKEAIKSAFgirtkrafwledEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDhisvhtedktfytEEDYREFLARHGWTClrefdgyrnvdnmddlrpgamyrgvt
MYLSEKPRPYLTEKPRPIDYYKDEavaaaaaaaaaaSSRDMIMEVAAASNGELQPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLaittadavaaaGVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGVT
*******************YY**********************************************************TWVQDETRILIAFRREMDGLFNTS***KHLWEQ****************CTDKWRNLL******************************************************************F************L*RRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDN**************
************************************************************************************ETRILIAFRREMDG*****KSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFK***************YYKEIDEIL******************************************************************************************************ISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRG**
MYLSEKPRPYLTEKPRPIDYYKDEAV*************DMIMEVAAASNGELQPQQMILAD*****************TWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKK***********KMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGVT
******PRPY*****RP**********************DMIMEVAAASNGELQPQQ*********************ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRG*GSAKMSYYKEIDEILKERSKN*************************************************LDHDGHPLAITTADAVAAAGVPPWNWRDPP*********GQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRG**
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MYLSEKPRPYLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGVT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
Q9FX53406 Trihelix transcription fa yes no 0.957 0.938 0.669 1e-160
Q9LU92372 Trihelix transcription fa no no 0.889 0.951 0.679 1e-143
Q9SDW0323 Trihelix transcription fa no no 0.276 0.340 0.327 2e-11
O80450289 Trihelix transcription fa no no 0.231 0.318 0.391 4e-11
Q39117575 Trihelix transcription fa no no 0.228 0.158 0.333 1e-08
Q8H181619 Trihelix transcription fa no no 0.160 0.103 0.391 5e-06
Q9C882 587 Trihelix transcription fa no no 0.170 0.115 0.376 8e-06
>sp|Q9FX53|TGT1_ARATH Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1 Back     alignment and function desciption
 Score =  563 bits (1451), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/411 (66%), Positives = 329/411 (80%), Gaps = 30/411 (7%)

Query: 10  YLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGEL---------------- 53
           ++++K RP D+YKD+       ++  +++RDM+++V   +N  +                
Sbjct: 2   FISDKSRPTDFYKDDH----HNSSTTSTTRDMMIDVLTTTNESVDLQSHHHHNHHNHHLH 57

Query: 54  --QPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWE 111
             QPQQ IL   S GEDHEV+APKKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWE
Sbjct: 58  QSQPQQQILLGESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWE 117

Query: 112 QISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKN 171
           QIS+KMREKGFDRSPTMCTDKWRNLLKEFKK KH DRG+GSAKMSYYKEI++IL+ERSK 
Sbjct: 118 QISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILRERSKK 177

Query: 172 A---QY-KATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHP 227
               QY K+ +   ++ KVD+FMQF+DKGFDDTSISFG VEA GRP LNLERRLDHDGHP
Sbjct: 178 VTPPQYNKSPNTPPTSAKVDSFMQFTDKGFDDTSISFGSVEANGRPALNLERRLDHDGHP 237

Query: 228 LAITTA-DAVAAAGVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRRIGIDGTPD 286
           LAITTA DAVAA GV PWNWR+  PGNG+    GQ FGG+VI+VK GDYTRRIG+DG+ +
Sbjct: 238 LAITTAVDAVAANGVTPWNWRE-TPGNGD-DSHGQPFGGRVITVKFGDYTRRIGVDGSAE 295

Query: 287 AIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHI 346
           AIKE I+SAFG+RT+RAFWLEDEDQI+RC+DRDMP+GNY L LD+GL I+VC YDES+ +
Sbjct: 296 AIKEVIRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLDDGLAIRVCHYDESNQL 355

Query: 347 SVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGV 397
            VH+E+K FYTEEDYREFLAR GW+ L + DG+RN++NMDDL+PGA+YRGV
Sbjct: 356 PVHSEEKIFYTEEDYREFLARQGWSSL-QVDGFRNIENMDDLQPGAVYRGV 405
Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LU92|TGT4_ARATH Trihelix transcription factor GT-4 OS=Arabidopsis thaliana GN=GT-4 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDW0|TGT3A_ARATH Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1 Back     alignment and function description
>sp|O80450|TGT3B_ARATH Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1 Back     alignment and function description
>sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q8H181|GTL2_ARATH Trihelix transcription factor GTL2 OS=Arabidopsis thaliana GN=At5g28300 PE=2 SV=1 Back     alignment and function description
>sp|Q9C882|GTL1_ARATH Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
255547822398 transcription factor, putative [Ricinus 0.934 0.934 0.741 1e-168
224102349385 predicted protein [Populus trichocarpa] 0.932 0.963 0.748 1e-167
356540183374 PREDICTED: trihelix transcription factor 0.924 0.983 0.748 1e-167
351724533376 GT-1 [Glycine max] gi|161789859|gb|ABX79 0.924 0.978 0.744 1e-166
147816769384 hypothetical protein VITISV_030092 [Viti 0.927 0.960 0.722 1e-165
224110784384 predicted protein [Populus trichocarpa] 0.932 0.966 0.740 1e-163
359473706348 PREDICTED: trihelix transcription factor 0.866 0.991 0.783 1e-161
449494476382 PREDICTED: trihelix transcription factor 0.919 0.958 0.722 1e-161
30683296406 DNA binding protein GT-1 [Arabidopsis th 0.957 0.938 0.669 1e-158
598073406 GT-1 [Arabidopsis thaliana] 0.957 0.938 0.666 1e-157
>gi|255547822|ref|XP_002514968.1| transcription factor, putative [Ricinus communis] gi|223546019|gb|EEF47522.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 304/410 (74%), Positives = 339/410 (82%), Gaps = 38/410 (9%)

Query: 10  YLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQ------------ 57
           YL+EK RPID+YK+E        A  A+  +MI+EV + +NGEL P Q            
Sbjct: 2   YLSEKTRPIDFYKEEV-------APTATRENMIIEVVS-TNGELPPHQQHHHIHNPHNPQ 53

Query: 58  -----------MILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSN 106
                      MIL +SSG + HEV+APKKRAETWVQDETR LI  RREMDGLFNTSKSN
Sbjct: 54  PQQQQQQQQQQMILGESSGEDTHEVKAPKKRAETWVQDETRSLIGLRREMDGLFNTSKSN 113

Query: 107 KHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILK 166
           KHLWE IS+KMREKGFDRSPTMCTDKWRNLLKEFKK +HQ+RGSGSAKMSYYKEIDEIL+
Sbjct: 114 KHLWESISSKMREKGFDRSPTMCTDKWRNLLKEFKKARHQERGSGSAKMSYYKEIDEILR 173

Query: 167 ERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGH 226
           ERSKNAQYK+ +     +KVD+FMQF+DKGFDDTSISFGPVEA+GRPTLNLERRLDHDGH
Sbjct: 174 ERSKNAQYKSPT---PTSKVDSFMQFADKGFDDTSISFGPVEASGRPTLNLERRLDHDGH 230

Query: 227 PLAITTADAVAAAGVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRRIGIDGTPD 286
           PLAIT ADAVAA+GVPPWNWR+ P G+G    EGQSFGG+VI+VK GDYTRRIGIDGT D
Sbjct: 231 PLAITAADAVAASGVPPWNWRETP-GSG---AEGQSFGGRVITVKYGDYTRRIGIDGTAD 286

Query: 287 AIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHI 346
           AI+EA+KSAF +RTKRAFWLEDEDQI+R +DRDMPVGNYTLHLDEGL IKVCLYDESDHI
Sbjct: 287 AIREAVKSAFRLRTKRAFWLEDEDQIIRSLDRDMPVGNYTLHLDEGLAIKVCLYDESDHI 346

Query: 347 SVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRG 396
            VHTE+K FYTE+DYREFL R GWTCLREFDGYRN+DNMDDLRPG +YRG
Sbjct: 347 PVHTEEKVFYTEDDYREFLVRRGWTCLREFDGYRNIDNMDDLRPGVIYRG 396

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102349|ref|XP_002312646.1| predicted protein [Populus trichocarpa] gi|222852466|gb|EEE90013.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356540183|ref|XP_003538569.1| PREDICTED: trihelix transcription factor GT-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|351724533|ref|NP_001236549.1| GT-1 [Glycine max] gi|161789859|gb|ABX79677.1| GT-1 [Glycine max] Back     alignment and taxonomy information
>gi|147816769|emb|CAN73236.1| hypothetical protein VITISV_030092 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224110784|ref|XP_002315635.1| predicted protein [Populus trichocarpa] gi|222864675|gb|EEF01806.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359473706|ref|XP_002270945.2| PREDICTED: trihelix transcription factor GT-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449494476|ref|XP_004159556.1| PREDICTED: trihelix transcription factor GT-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30683296|ref|NP_172802.2| DNA binding protein GT-1 [Arabidopsis thaliana] gi|75334447|sp|Q9FX53.1|TGT1_ARATH RecName: Full=Trihelix transcription factor GT-1; AltName: Full=Trihelix DNA-binding protein GT-1 gi|9958053|gb|AAG09542.1|AC011810_1 DNA binding protein GT-1 [Arabidopsis thaliana] gi|110736565|dbj|BAF00248.1| hypothetical protein [Arabidopsis thaliana] gi|332190897|gb|AEE29018.1| DNA binding protein GT-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|598073|gb|AAA66473.1| GT-1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
TAIR|locus:2009897406 GT-1 "GT-1" [Arabidopsis thali 0.967 0.948 0.651 1.3e-139
TAIR|locus:2092130372 AT3G25990 [Arabidopsis thalian 0.889 0.951 0.668 4.4e-132
TAIR|locus:2179192323 AT5G01380 [Arabidopsis thalian 0.276 0.340 0.342 2.8e-12
TAIR|locus:2042847289 AT2G38250 [Arabidopsis thalian 0.231 0.318 0.391 1.4e-11
TAIR|locus:2036267603 AT1G76880 [Arabidopsis thalian 0.311 0.205 0.317 1.1e-10
TAIR|locus:2036272575 GT2 [Arabidopsis thaliana (tax 0.293 0.203 0.307 8.3e-09
TAIR|locus:2167336911 emb2746 "embryo defective 2746 0.407 0.177 0.238 5.8e-08
TAIR|locus:2185319619 AT5G28300 [Arabidopsis thalian 0.326 0.210 0.300 7.2e-08
TAIR|locus:2169013398 AT5G47660 [Arabidopsis thalian 0.233 0.233 0.288 1.2e-06
TAIR|locus:2100148481 EDA31 "embryo sac development 0.228 0.189 0.315 3.3e-05
TAIR|locus:2009897 GT-1 "GT-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
 Identities = 265/407 (65%), Positives = 311/407 (76%)

Query:    10 YLTEKPRPIDYYKDEXXXXXXXXXXXXSSRDMIM----EVAAAS-------NGEL---QP 55
             ++++K RP D+YKD+               D++      V   S       N  L   QP
Sbjct:     2 FISDKSRPTDFYKDDHHNSSTTSTTRDMMIDVLTTTNESVDLQSHHHHNHHNHHLHQSQP 61

Query:    56 QQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISA 115
             QQ IL   S GEDHEV+APKKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+
Sbjct:    62 QQQILLGESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS 121

Query:   116 KMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNA--- 172
             KMREKGFDRSPTMCTDKWRNLLKEFKK KH DRG+GSAKMSYYKEI++IL+ERSK     
Sbjct:   122 KMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILRERSKKVTPP 181

Query:   173 QY-KATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLXXX 231
             QY K+ +   ++ KVD+FMQF+DKGFDDTSISFG VEA GRP LNLERRLDHDGHPL   
Sbjct:   182 QYNKSPNTPPTSAKVDSFMQFTDKGFDDTSISFGSVEANGRPALNLERRLDHDGHPLAIT 241

Query:   232 XXXXXXXX-GVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKE 290
                      GV PWNWR+ P GNG+    GQ FGG+VI+VK GDYTRRIG+DG+ +AIKE
Sbjct:   242 TAVDAVAANGVTPWNWRETP-GNGD-DSHGQPFGGRVITVKFGDYTRRIGVDGSAEAIKE 299

Query:   291 AIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHT 350
              I+SAFG+RT+RAFWLEDEDQI+RC+DRDMP+GNY L LD+GL I+VC YDES+ + VH+
Sbjct:   300 VIRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLDDGLAIRVCHYDESNQLPVHS 359

Query:   351 EDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNMDDLRPGAMYRGV 397
             E+K FYTEEDYREFLAR GW+ L + DG+RN++NMDDL+PGA+YRGV
Sbjct:   360 EEKIFYTEEDYREFLARQGWSSL-QVDGFRNIENMDDLQPGAVYRGV 405
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0042802 "identical protein binding" evidence=IPI
GO:0043565 "sequence-specific DNA binding" evidence=IDA
TAIR|locus:2092130 AT3G25990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179192 AT5G01380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042847 AT2G38250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036267 AT1G76880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036272 GT2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167336 emb2746 "embryo defective 2746" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185319 AT5G28300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169013 AT5G47660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100148 EDA31 "embryo sac development arrest 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FX53TGT1_ARATHNo assigned EC number0.66900.95720.9384yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
cd1220366 cd12203, GT1, GT1, myb-like, SANT family 5e-29
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 3e-23
pfam1387378 pfam13873, Myb_DNA-bind_5, Myb/SANT-like DNA-bindi 4e-13
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 0.001
pfam1054584 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase tra 0.002
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 0.004
>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family Back     alignment and domain information 
 Score =  107 bits (269), Expect = 5e-29
 Identities = 34/66 (51%), Positives = 45/66 (68%)

Query: 79  ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138
           + W ++ET  LI  RREM+  F  +KS K LWE+I+AKMRE G++RS   C +KW NL K
Sbjct: 1   KRWPREETLSLIRLRREMESRFQETKSKKALWEEIAAKMRELGYNRSAKQCKEKWENLNK 60

Query: 139 EFKKTK 144
            +KK K
Sbjct: 61  YYKKVK 66

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|222429 pfam13873, Myb_DNA-bind_5, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|220803 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase transcription factor Myb/SANT-like Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
KOG4282345 consensus Transcription factor GT-2 and related pr 99.92
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.86
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.48
smart0059589 MADF subfamily of SANT domain. 98.34
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 98.22
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 98.03
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.63
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.46
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.36
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 97.18
PLN03212249 Transcription repressor MYB5; Provisional 95.05
PLN03091 459 hypothetical protein; Provisional 93.94
PLN03091459 hypothetical protein; Provisional 93.02
PLN03212249 Transcription repressor MYB5; Provisional 92.49
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 84.21
KOG1279506 consensus Chromatin remodeling factor subunit and 83.98
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information 
Probab=99.92  E-value=8.5e-25  Score=213.90  Aligned_cols=273  Identities=22%  Similarity=0.319  Sum_probs=204.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcccCCCC-CCCCCc
Q 015940           78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGS-GSAKMS  156 (398)
Q Consensus        78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~YKKIKd~nkGs-GskkWp  156 (398)
                      ...|+.+||++||++|++++..|...++|.++|++||++|++.||.||+.||+.||+||+++||+.|....+. +...|+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~s~~~  133 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEGSSWK  133 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCccch
Confidence            6899999999999999999999999999999999999999999999999999999999999999999887644 467899


Q ss_pred             ChHHHHHHHc-ccccccc-------cccccccCCcccccccccccCCCCCCCCCCCCcccCCCCC-CCccccccCCCCCc
Q 015940          157 YYKEIDEILK-ERSKNAQ-------YKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRP-TLNLERRLDHDGHP  227 (398)
Q Consensus       157 YFDEMDeILG-~rps~~~-------~~sP~~s~Ss~k~D~~~q~sD~~~~~tsi~f~pvea~gr~-~ln~E~~lD~d~h~  227 (398)
                      ||.+||.++. .++....       ...|....+++.    .+|+..+.... .++.-.+.+..+ .+|.+.....+..+
T Consensus       134 ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~  208 (345)
T KOG4282|consen  134 FFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSE----PQFSSNPTELQ-FDGSSLEDSSQPSGLNEDNSNSSSPEP  208 (345)
T ss_pred             HHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCC----CCCCCCccccc-cCCCcCCCCCcccccCccccccCCCCC
Confidence            9999999997 2221010       111111111111    33332222222 222333455555 44444444444566


Q ss_pred             cccchhhHHHhcCCCCCCCCCCCCCCCCccCCCccccceEEEEeecccceeecccCChHHHHHHHHHhhcccccceeecc
Q 015940          228 LAITTADAVAAAGVPPWNWRDPPPGNGNLCGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLE  307 (398)
Q Consensus       228 l~i~~ad~vaa~g~~p~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~t~r~g~~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (398)
                      .+...++.++    .+++++++ ++.+   +.           +.+.+.++.+++|..+.+++.++..++...+...|++
T Consensus       209 ~~~~~~~~~~----~s~~~~~s-~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  269 (345)
T KOG4282|consen  209 VAGSLSNDTS----SSSSPDDS-ADSE---GG-----------KSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLE  269 (345)
T ss_pred             CCcchhhccc----cccchhcc-cccc---cC-----------CCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHH
Confidence            5543333333    78999999 5555   11           6788899999999999999999999999999999999


Q ss_pred             ccchhhhhcccCCCCcceEEecCCCceeEEeecCCCCCcccccccceecchhhHHHHHHhhccccceeccCcccccCc
Q 015940          308 DEDQIVRCIDRDMPVGNYTLHLDEGLTIKVCLYDESDHISVHTEDKTFYTEEDYREFLARHGWTCLREFDGYRNVDNM  385 (398)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (398)
                      .-.+ .+.+.|-++...+.....+.          ..++.++.+++.+.++.+++..++.+++++-.-..--.+..+.
T Consensus       270 ~~~~-~~~~~~~~~~e~~r~~~~~r----------~ke~e~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~  336 (345)
T KOG4282|consen  270 RVEE-KKEQERMSEEEKWRMEEIER----------NKELELARQERIQETQLEIRSIKAIQASRRGSLIDPAQNTLTR  336 (345)
T ss_pred             HHhc-cchHhhhhHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHHHHHHHHHHhccccCCcCcccccCCC
Confidence            9988 89999999988887765554          4668999999999999999999999999987665544444443

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
2jmw_A86 Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 2e-41
2ebi_A86 Arabidopsis Gt-1 Dna-Binding Domain With T133d Phos 1e-40
>pdb|2JMW|A Chain A, Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 Length = 86 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/86 (91%), Positives = 81/86 (94%)
Query: 75  KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134
           KKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+KMREKGFDRSPTMCTDKWR
Sbjct: 1   KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWR 60
Query: 135 NLLKEFKKTKHQDRGSGSAKMSYYKE 160
           NLLKEFKK KH DRG+GSAKMSYYKE
Sbjct: 61  NLLKEFKKAKHHDRGNGSAKMSYYKE 86
>pdb|2EBI|A Chain A, Arabidopsis Gt-1 Dna-Binding Domain With T133d Phosphomimetic Mutation Length = 86 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 5e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure
 Score =  115 bits (289), Expect = 5e-32
 Identities = 78/86 (90%), Positives = 80/86 (93%)

Query: 75  KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134
           KKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+KMREKGFDRSP MCTDKWR
Sbjct: 1   KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWR 60

Query: 135 NLLKEFKKTKHQDRGSGSAKMSYYKE 160
           NLLKEFKK KH DRG+GSAKMSYYKE
Sbjct: 61  NLLKEFKKAKHHDRGNGSAKMSYYKE 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.91
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 97.95
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.78
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.73
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.49
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.44
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.42
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.38
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.33
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.29
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.22
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.2
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.15
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.11
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.05
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.04
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 97.03
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 96.99
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 96.95
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.7
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.64
2cjj_A93 Radialis; plant development, DNA-binding protein, 96.6
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.59
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.44
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.36
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.25
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.06
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 94.86
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.83
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.74
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 95.74
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.4
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 95.31
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 94.66
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 94.13
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 94.02
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 93.69
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 92.67
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 91.35
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 89.34
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 88.8
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 88.48
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 87.33
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.91  E-value=6e-25  Score=176.33  Aligned_cols=86  Identities=91%  Similarity=1.401  Sum_probs=81.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 015940           75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAK  154 (398)
Q Consensus        75 skRg~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~YKKIKd~nkGsGskk  154 (398)
                      ++|..+||++||++||++|++++..|..++++..+|++||+.|.++||+||+.||+.||+||++.||++|++++.+|+.+
T Consensus         1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~   80 (86)
T 2ebi_A            1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAK   80 (86)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence            46889999999999999999999999998899999999999999999999999999999999999999999988778789


Q ss_pred             CcChHH
Q 015940          155 MSYYKE  160 (398)
Q Consensus       155 WpYFDE  160 (398)
                      |+||++
T Consensus        81 ~~yf~e   86 (86)
T 2ebi_A           81 MSYYKE   86 (86)
T ss_dssp             CCCCCC
T ss_pred             CCCCCc
Confidence            999975
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 398
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 6e-04
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 0.002
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 0.002
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 68  DHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPT 127
           + +V +  ++   W ++  R+++   +E         +  H +  IS ++     +++P 
Sbjct: 23  NSKVSSTGEKVVLWTREADRVILTMCQEQG-------AQPHTFSVISQQLG----NKTPV 71

Query: 128 MCTDKWRNLLKEFKKTKHQDRGSG 151
             + ++R L++ F         SG
Sbjct: 72  EVSHRFRELMQLFHTACESGPSSG 95
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.87
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.76
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.68
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 97.55
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.4
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.39
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.26
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.1
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.99
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 96.82
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.61
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.5
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 95.68
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 95.18
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 94.33
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.87  E-value=1.8e-05  Score=58.48  Aligned_cols=58  Identities=12%  Similarity=0.346  Sum_probs=46.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcc
Q 015940           78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKH  145 (398)
Q Consensus        78 g~~WT~eET~lLIeL~~E~e~rF~~sKrnkkLWEeIAekMaEkGY~RSaeQCr~KWKNLKK~YKKIKd  145 (398)
                      +..||.+|-.+|+++...+    ..  ....-|+.||..|.    .||+.||+.+|+.|....+.+..
T Consensus         1 G~~WT~eEd~~L~~~v~~~----~~--~~~~~W~~Ia~~l~----gRt~~qc~~r~~~L~~dik~ies   58 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVY----DK--DTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIES   58 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHS----CT--TCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHH----CC--CCchHHHHHHHHcC----CCCHHHHHHHHHHHHHHhhcccc
Confidence            4689999999999988653    21  23347999999986    49999999999999988877653
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure