Citrus Sinensis ID: 015945
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 398 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SA96 | 392 | Arogenate dehydratase/pre | yes | no | 0.972 | 0.987 | 0.677 | 1e-152 | |
| Q9SGD6 | 413 | Arogenate dehydratase/pre | no | no | 0.756 | 0.728 | 0.696 | 1e-120 | |
| Q9SSE7 | 381 | Arogenate dehydratase/pre | no | no | 0.816 | 0.853 | 0.669 | 1e-120 | |
| Q9ZUY3 | 424 | Arogenate dehydratase 3, | no | no | 0.776 | 0.728 | 0.663 | 1e-119 | |
| O22241 | 424 | Arogenate dehydratase 4, | no | no | 0.761 | 0.714 | 0.644 | 1e-108 | |
| Q9FNJ8 | 425 | Arogenate dehydratase 5, | no | no | 0.766 | 0.717 | 0.640 | 1e-103 | |
| P43900 | 385 | P-protein OS=Haemophilus | yes | no | 0.678 | 0.701 | 0.318 | 3e-42 | |
| O67085 | 362 | P-protein OS=Aquifex aeol | yes | no | 0.663 | 0.729 | 0.377 | 8e-41 | |
| Q02286 | 387 | P-protein OS=Enterobacter | N/A | no | 0.683 | 0.702 | 0.326 | 3e-38 | |
| Q58054 | 272 | Prephenate dehydratase OS | yes | no | 0.653 | 0.955 | 0.369 | 4e-38 |
| >sp|Q9SA96|AROD1_ARATH Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 538 bits (1385), Expect = e-152, Method: Compositional matrix adjust.
Identities = 269/397 (67%), Positives = 317/397 (79%), Gaps = 10/397 (2%)
Query: 1 MALKANPVWGCAKTPHFHKGLPDLVPNRCGFGLD-LRVLNKWECTCVGVLAQTHRAITPV 59
MAL+ P+W C +T H L L F D R WEC+ + + RA+T +
Sbjct: 1 MALRCFPIWVCPQTTHHRSPLMGLAE----FDADKRRRFCLWECSS----SASQRAVTAI 52
Query: 60 EDDRPYTPDVQ-SSEANERSQDSQSSGFHKDLNLLPKPLSIMELSSSPDDGTKVRVAYQG 118
E + P++ +++ SS+ +Q++QS FH+DL++LPKPL+ L SS D +KVR+++QG
Sbjct: 53 EGEIPFSRELKKSSDELGLTQETQSLSFHRDLSMLPKPLTANSLYSSDGDDSKVRISFQG 112
Query: 119 LPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL 178
+PGAYSE AA KA+P CETVPC+QFEAAF+AVELWLVDKAVLPIENSVGGSIHRNYDLLL
Sbjct: 113 IPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSIHRNYDLLL 172
Query: 179 RHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTA 238
RHRLHIV EV L VNHCLLG+PGV KE++K V SHPQAL QC +L+NLGI RISA DTA
Sbjct: 173 RHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLGIQRISAKDTA 232
Query: 239 GAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRP 298
AAQ V+S G+ D GA+AS +AA IYGLDILAE IQDD +NVTRFLILAREP+I TDRP
Sbjct: 233 TAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQDDVNNVTRFLILAREPMIPRTDRP 292
Query: 299 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYL 358
YKTSIVF+LEEGPG+LFKALAVFALR INL+KIESRPQR+RPLRVVD SN GSAKYFDYL
Sbjct: 293 YKTSIVFSLEEGPGVLFKALAVFALRSINLSKIESRPQRRRPLRVVDGSNNGSAKYFDYL 352
Query: 359 FYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMD 395
FYIDFEASMAD RAQ ALGHLQEFA+F+R+LGCYPMD
Sbjct: 353 FYIDFEASMADTRAQHALGHLQEFASFIRILGCYPMD 389
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Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9EC: 1 |
| >sp|Q9SGD6|AROD6_ARATH Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9SSE7|AROD2_ARATH Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9ZUY3|AROD3_ARATH Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1 | Back alignment and function description |
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| >sp|O22241|AROD4_ARATH Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9FNJ8|AROD5_ARATH Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1 | Back alignment and function description |
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| >sp|P43900|PHEA_HAEIN P-protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pheA PE=4 SV=1 | Back alignment and function description |
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| >sp|O67085|PHEA_AQUAE P-protein OS=Aquifex aeolicus (strain VF5) GN=pheA PE=4 SV=1 | Back alignment and function description |
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| >sp|Q02286|PHEA_ENTAG P-protein OS=Enterobacter agglomerans GN=pheA PE=4 SV=1 | Back alignment and function description |
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| >sp|Q58054|PHEA_METJA Prephenate dehydratase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=pheA PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 398 | ||||||
| 224113661 | 400 | arogenate/prephenate dehydratase [Populu | 0.994 | 0.99 | 0.788 | 0.0 | |
| 255554867 | 403 | prephenate dehydratase, putative [Ricinu | 0.994 | 0.982 | 0.772 | 1e-177 | |
| 224078592 | 397 | arogenate/prephenate dehydratase [Populu | 0.989 | 0.992 | 0.756 | 1e-174 | |
| 302144131 | 396 | unnamed protein product [Vitis vinifera] | 0.982 | 0.987 | 0.729 | 1e-166 | |
| 359483430 | 575 | PREDICTED: arogenate dehydratase/prephen | 0.969 | 0.671 | 0.736 | 1e-166 | |
| 356563073 | 399 | PREDICTED: arogenate dehydratase/prephen | 0.994 | 0.992 | 0.725 | 1e-159 | |
| 357480317 | 393 | Arogenate dehydratase/prephenate dehydra | 0.952 | 0.964 | 0.701 | 1e-153 | |
| 388496604 | 393 | unknown [Medicago truncatula] | 0.952 | 0.964 | 0.696 | 1e-151 | |
| 449479475 | 396 | PREDICTED: arogenate dehydratase/prephen | 0.972 | 0.977 | 0.697 | 1e-151 | |
| 297844030 | 392 | prephenate dehydratase family protein [A | 0.967 | 0.982 | 0.671 | 1e-150 |
| >gi|224113661|ref|XP_002316535.1| arogenate/prephenate dehydratase [Populus trichocarpa] gi|222859600|gb|EEE97147.1| arogenate/prephenate dehydratase [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/402 (78%), Positives = 350/402 (87%), Gaps = 6/402 (1%)
Query: 1 MALKA-NPVWGCAKTPHFHKGLPDLVPNRCG---FGLDLRVLNKWECTCVGVLAQTHRAI 56
MAL+A +P+W PH G+ DL RC DL L KWEC C+ VLAQ RAI
Sbjct: 1 MALRAASPIWISPLRPHSKVGVSDLGLRRCADLRCYWDLERLPKWECCCLSVLAQ--RAI 58
Query: 57 TPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLLPKPLSIMELSSSPDDGTKVRVAY 116
TPVED++P P V +S A ++ QD+QS GFHKDLNLLPKPLS +LSSSP +G +VRVAY
Sbjct: 59 TPVEDEKPSAPQVDTSRATDQVQDTQSRGFHKDLNLLPKPLSAADLSSSPGNGAQVRVAY 118
Query: 117 QGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDL 176
QG+PGAYSEAAA KAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDL
Sbjct: 119 QGIPGAYSEAAALKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDL 178
Query: 177 LLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADD 236
LLRHRLHIVGEVQ+VVNHCLLGLPGV KEELKRV SHPQALAQCEMTL+ LGI+R+SADD
Sbjct: 179 LLRHRLHIVGEVQMVVNHCLLGLPGVPKEELKRVLSHPQALAQCEMTLTKLGIIRVSADD 238
Query: 237 TAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTD 296
+AGAAQMV + GERDTGA+ASA+AA+IYGL+IL EKIQDDDDN+TRFLILAREP+I G++
Sbjct: 239 SAGAAQMVVANGERDTGAIASARAADIYGLNILLEKIQDDDDNITRFLILAREPMIPGSN 298
Query: 297 RPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFD 356
RP+KTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSA+YFD
Sbjct: 299 RPHKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSARYFD 358
Query: 357 YLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMDTTL 398
YLFYIDF+ASMA+PRAQ AL HLQEFA FLRVLGCYP D TL
Sbjct: 359 YLFYIDFDASMAEPRAQHALAHLQEFARFLRVLGCYPTDATL 400
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554867|ref|XP_002518471.1| prephenate dehydratase, putative [Ricinus communis] gi|223542316|gb|EEF43858.1| prephenate dehydratase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224078592|ref|XP_002305566.1| arogenate/prephenate dehydratase [Populus trichocarpa] gi|222848530|gb|EEE86077.1| arogenate/prephenate dehydratase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|302144131|emb|CBI23236.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359483430|ref|XP_002268124.2| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356563073|ref|XP_003549790.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357480317|ref|XP_003610444.1| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula] gi|355511499|gb|AES92641.1| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|388496604|gb|AFK36368.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449479475|ref|XP_004155609.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297844030|ref|XP_002889896.1| prephenate dehydratase family protein [Arabidopsis lyrata subsp. lyrata] gi|297335738|gb|EFH66155.1| prephenate dehydratase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 398 | ||||||
| TAIR|locus:2027332 | 392 | ADT1 "arogenate dehydratase 1" | 0.972 | 0.987 | 0.677 | 4.6e-137 | |
| TAIR|locus:2199963 | 413 | ADT6 "arogenate dehydratase 6" | 0.761 | 0.733 | 0.695 | 9.7e-112 | |
| TAIR|locus:2091127 | 381 | ADT2 "arogenate dehydratase 2" | 0.816 | 0.853 | 0.669 | 1.6e-111 | |
| TAIR|locus:2042021 | 424 | PD1 "prephenate dehydratase 1" | 0.776 | 0.728 | 0.663 | 2.1e-109 | |
| TAIR|locus:2101630 | 424 | ADT4 "arogenate dehydratase 4" | 0.768 | 0.721 | 0.643 | 1.8e-101 | |
| TAIR|locus:2162459 | 425 | ADT5 "arogenate dehydratase 5" | 0.766 | 0.717 | 0.640 | 5.6e-100 | |
| TIGR_CMR|DET_0461 | 358 | DET_0461 "chorismate mutase/pr | 0.783 | 0.871 | 0.369 | 1.4e-46 | |
| UNIPROTKB|Q0C4F5 | 278 | HNE_0659 "Prephenate dehydrata | 0.668 | 0.956 | 0.385 | 1.1e-41 | |
| UNIPROTKB|Q9KU24 | 391 | VC_0705 "Chorismate mutase/pre | 0.675 | 0.687 | 0.347 | 4.2e-40 | |
| TIGR_CMR|VC_0705 | 391 | VC_0705 "chorismate mutase/pre | 0.675 | 0.687 | 0.347 | 4.2e-40 |
| TAIR|locus:2027332 ADT1 "arogenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1342 (477.5 bits), Expect = 4.6e-137, P = 4.6e-137
Identities = 269/397 (67%), Positives = 317/397 (79%)
Query: 1 MALKANPVWGCAKTPHFHKGLPDLVPNRCGFGLDLRV-LNKWECTCVGVLAQTHRAITPV 59
MAL+ P+W C +T H L L F D R WEC+ + + RA+T +
Sbjct: 1 MALRCFPIWVCPQTTHHRSPLMGLAE----FDADKRRRFCLWECSS----SASQRAVTAI 52
Query: 60 EDDRPYTPDVQ-SSEANERSQDSQSSGFHKDLNLLPKPLSIMELSSSPDDGTKVRVAYQG 118
E + P++ +++ SS+ +Q++QS FH+DL++LPKPL+ L SS D +KVR+++QG
Sbjct: 53 EGEIPFSRELKKSSDELGLTQETQSLSFHRDLSMLPKPLTANSLYSSDGDDSKVRISFQG 112
Query: 119 LPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLL 178
+PGAYSE AA KA+P CETVPC+QFEAAF+AVELWLVDKAVLPIENSVGGSIHRNYDLLL
Sbjct: 113 IPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSIHRNYDLLL 172
Query: 179 RHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTA 238
RHRLHIV EV L VNHCLLG+PGV KE++K V SHPQAL QC +L+NLGI RISA DTA
Sbjct: 173 RHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLGIQRISAKDTA 232
Query: 239 GAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRP 298
AAQ V+S G+ D GA+AS +AA IYGLDILAE IQDD +NVTRFLILAREP+I TDRP
Sbjct: 233 TAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQDDVNNVTRFLILAREPMIPRTDRP 292
Query: 299 YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYL 358
YKTSIVF+LEEGPG+LFKALAVFALR INL+KIESRPQR+RPLRVVD SN GSAKYFDYL
Sbjct: 293 YKTSIVFSLEEGPGVLFKALAVFALRSINLSKIESRPQRRRPLRVVDGSNNGSAKYFDYL 352
Query: 359 FYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMD 395
FYIDFEASMAD RAQ ALGHLQEFA+F+R+LGCYPMD
Sbjct: 353 FYIDFEASMADTRAQHALGHLQEFASFIRILGCYPMD 389
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| TAIR|locus:2199963 ADT6 "arogenate dehydratase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2091127 ADT2 "arogenate dehydratase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2042021 PD1 "prephenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2101630 ADT4 "arogenate dehydratase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2162459 ADT5 "arogenate dehydratase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TIGR_CMR|DET_0461 DET_0461 "chorismate mutase/prephenate dehydratase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0C4F5 HNE_0659 "Prephenate dehydratase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KU24 VC_0705 "Chorismate mutase/prephenate dehydratase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_0705 VC_0705 "chorismate mutase/prephenate dehydratase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SA96 | AROD1_ARATH | 4, ., 2, ., 1, ., 9, 1 | 0.6775 | 0.9723 | 0.9872 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.2.1.91 | 0.991 |
| 3rd Layer | 4.2.1 | 0.976 |
| 4th Layer | 4.2.1.51 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 398 | |||
| PLN02317 | 382 | PLN02317, PLN02317, arogenate dehydratase | 0.0 | |
| COG0077 | 279 | COG0077, PheA, Prephenate dehydratase [Amino acid | 1e-108 | |
| PRK11899 | 279 | PRK11899, PRK11899, prephenate dehydratase; Provis | 1e-90 | |
| PRK11898 | 283 | PRK11898, PRK11898, prephenate dehydratase; Provis | 4e-86 | |
| pfam00800 | 181 | pfam00800, PDT, Prephenate dehydratase | 1e-81 | |
| PRK10622 | 386 | PRK10622, pheA, bifunctional chorismate mutase/pre | 3e-51 | |
| cd04905 | 80 | cd04905, ACT_CM-PDT, C-terminal ACT domain of the | 1e-33 | |
| cd04880 | 75 | cd04880, ACT_AAAH-PDT-like, ACT domain of the nonh | 2e-26 | |
| cd04904 | 74 | cd04904, ACT_AAAH, ACT domain of the nonheme iron- | 1e-09 | |
| cd04931 | 90 | cd04931, ACT_PAH, ACT domain of the nonheme iron-d | 4e-07 | |
| TIGR01268 | 436 | TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydrox | 3e-06 | |
| cd04929 | 74 | cd04929, ACT_TPH, ACT domain of the nonheme iron-d | 2e-05 | |
| cd04930 | 115 | cd04930, ACT_TH, ACT domain of the nonheme iron-de | 2e-04 | |
| cd02116 | 60 | cd02116, ACT, ACT domains are commonly involved in | 5e-04 |
| >gnl|CDD|215181 PLN02317, PLN02317, arogenate dehydratase | Back alignment and domain information |
|---|
Score = 664 bits (1714), Expect = 0.0
Identities = 269/358 (75%), Positives = 303/358 (84%), Gaps = 3/358 (0%)
Query: 41 WECTCVGVLAQTHRAITPVEDDRPYTPDVQSSEANERSQDSQSSGFHKDLNLLPKPLSIM 100
W+ +C + + + +P D P P V+SS +QS FH+DL+ LP+PLSI
Sbjct: 27 WQSSCAIL---SSKVRSPEGDAPPSRPAVESSGGAGLVVATQSVSFHRDLSGLPRPLSIT 83
Query: 101 ELSSSPDDGTKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVL 160
+LS SP G+K+RVAYQG+PGAYSEAAARKAYP CE VPC+QFEAAF+AVELWL D+AVL
Sbjct: 84 DLSPSPMHGSKLRVAYQGVPGAYSEAAARKAYPNCEAVPCEQFEAAFQAVELWLADRAVL 143
Query: 161 PIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQC 220
PIENS+GGSIHRNYDLLLRHRLHIVGEVQL V+HCLL LPGV KEELKRV SHPQALAQC
Sbjct: 144 PIENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEELKRVISHPQALAQC 203
Query: 221 EMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNV 280
E TL+ LG+VR + DDTAGAA+MVA+ G RDT A+ASA+AAE+YGLDILAE IQDD DNV
Sbjct: 204 ENTLTKLGVVREAVDDTAGAAKMVAANGLRDTAAIASARAAELYGLDILAEGIQDDSDNV 263
Query: 281 TRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRP 340
TRFL+LAREPII TDRP+KTSIVF+LEEGPG+LFKALAVFALRDINLTKIESRPQRKRP
Sbjct: 264 TRFLMLAREPIIPRTDRPFKTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRP 323
Query: 341 LRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMDTTL 398
LRVVDDSN G+AKYFDYLFY+DFEASMADPRAQ AL HLQEFATFLRVLG YPMD T
Sbjct: 324 LRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHLQEFATFLRVLGSYPMDMTP 381
|
Length = 382 |
| >gnl|CDD|223155 COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|237014 PRK11899, PRK11899, prephenate dehydratase; Provisional | Back alignment and domain information |
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| >gnl|CDD|237013 PRK11898, PRK11898, prephenate dehydratase; Provisional | Back alignment and domain information |
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| >gnl|CDD|216127 pfam00800, PDT, Prephenate dehydratase | Back alignment and domain information |
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| >gnl|CDD|182594 PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional | Back alignment and domain information |
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| >gnl|CDD|153177 cd04905, ACT_CM-PDT, C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
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| >gnl|CDD|153152 cd04880, ACT_AAAH-PDT-like, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
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| >gnl|CDD|153176 cd04904, ACT_AAAH, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
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| >gnl|CDD|153203 cd04931, ACT_PAH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) | Back alignment and domain information |
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| >gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric form | Back alignment and domain information |
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| >gnl|CDD|153201 cd04929, ACT_TPH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes | Back alignment and domain information |
|---|
| >gnl|CDD|153202 cd04930, ACT_TH, ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) | Back alignment and domain information |
|---|
| >gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 398 | |||
| PRK10622 | 386 | pheA bifunctional chorismate mutase/prephenate deh | 100.0 | |
| COG0077 | 279 | PheA Prephenate dehydratase [Amino acid transport | 100.0 | |
| PLN02317 | 382 | arogenate dehydratase | 100.0 | |
| PRK11899 | 279 | prephenate dehydratase; Provisional | 100.0 | |
| PRK11898 | 283 | prephenate dehydratase; Provisional | 100.0 | |
| KOG2797 | 377 | consensus Prephenate dehydratase [Amino acid trans | 100.0 | |
| PF00800 | 181 | PDT: Prephenate dehydratase Caution this is only a | 100.0 | |
| PRK06034 | 279 | hypothetical protein; Provisional | 99.97 | |
| cd04904 | 74 | ACT_AAAH ACT domain of the nonheme iron-dependent, | 99.85 | |
| cd04931 | 90 | ACT_PAH ACT domain of the nonheme iron-dependent a | 99.82 | |
| cd04930 | 115 | ACT_TH ACT domain of the nonheme iron-dependent ar | 99.81 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 99.81 | |
| cd04929 | 74 | ACT_TPH ACT domain of the nonheme iron-dependent a | 99.81 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 99.78 | |
| TIGR01268 | 436 | Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra | 99.69 | |
| TIGR01270 | 464 | Trp_5_monoox tryptophan 5-monooxygenase, tetrameri | 99.56 | |
| TIGR01801 | 102 | CM_A chorismate mutase domain of gram positive Aro | 99.45 | |
| TIGR01797 | 83 | CM_P_1 chorismate mutase domain of proteobacterial | 99.41 | |
| PRK07248 | 87 | hypothetical protein; Provisional | 99.38 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.37 | |
| TIGR01805 | 81 | CM_mono_grmpos monofunctional chorismate mutase, g | 99.36 | |
| TIGR01807 | 76 | CM_P2 chorismate mutase domain of proteobacterial | 99.32 | |
| TIGR01799 | 83 | CM_T chorismate mutase domain of T-protein. This m | 99.31 | |
| TIGR01803 | 82 | CM-like chorismate mutase related enzymes. This su | 99.31 | |
| PRK06443 | 177 | chorismate mutase; Validated | 99.26 | |
| PRK06285 | 96 | chorismate mutase; Provisional | 99.25 | |
| TIGR01791 | 83 | CM_archaeal chorismate mutase, archaeal type. This | 99.25 | |
| PRK07075 | 101 | isochorismate-pyruvate lyase; Reviewed | 99.23 | |
| COG1605 | 101 | PheA Chorismate mutase [Amino acid transport and m | 99.21 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 99.13 | |
| TIGR01795 | 94 | CM_mono_cladeE monofunctional chorismate mutase, a | 99.13 | |
| PRK09239 | 104 | chorismate mutase; Provisional | 99.12 | |
| PF01817 | 81 | CM_2: Chorismate mutase type II; InterPro: IPR0208 | 99.05 | |
| TIGR01808 | 74 | CM_M_hiGC-arch monofunctional chorismate mutase, h | 98.93 | |
| PRK07857 | 106 | hypothetical protein; Provisional | 98.92 | |
| smart00830 | 79 | CM_2 Chorismate mutase type II. Chorismate mutase, | 98.77 | |
| TIGR01269 | 457 | Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. | 98.69 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.66 | |
| KOG3820 | 461 | consensus Aromatic amino acid hydroxylase [Amino a | 98.47 | |
| TIGR01806 | 114 | CM_mono2 chorismate mutase, putative. This model r | 98.17 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 98.06 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 98.01 | |
| PRK09269 | 193 | chorismate mutase; Provisional | 97.77 | |
| PRK08055 | 181 | chorismate mutase; Provisional | 97.71 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 97.38 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 97.32 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 97.18 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 97.14 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 97.1 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 97.09 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 96.9 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 96.8 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 96.72 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 96.66 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 96.57 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 96.52 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 96.5 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 96.5 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 96.49 | |
| cd04885 | 68 | ACT_ThrD-I Tandem C-terminal ACT domains of threon | 96.46 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 96.45 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 96.35 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 96.35 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 96.24 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 96.18 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 96.15 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 96.12 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 96.1 | |
| cd04896 | 75 | ACT_ACR-like_3 ACT domain-containing protein which | 95.95 | |
| cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type o | 95.83 | |
| cd04906 | 85 | ACT_ThrD-I_1 First of two tandem C-terminal ACT do | 95.8 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 95.69 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 95.53 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 95.48 | |
| PRK00194 | 90 | hypothetical protein; Validated | 95.18 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 95.04 | |
| cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial sign | 94.98 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 94.95 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 94.86 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 94.81 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 94.77 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 94.67 | |
| cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the b | 94.58 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 94.54 | |
| COG4492 | 150 | PheB ACT domain-containing protein [General functi | 94.49 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 94.44 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 94.4 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 94.39 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 94.36 | |
| cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is c | 94.31 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 93.29 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 93.12 | |
| COG2061 | 170 | ACT-domain-containing protein, predicted allosteri | 92.88 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 92.2 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 92.05 | |
| cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, | 91.6 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 91.3 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 90.65 | |
| COG1707 | 218 | ACT domain-containing protein [General function pr | 90.21 | |
| cd04897 | 75 | ACT_ACR_3 ACT domain-containing protein which is c | 89.92 | |
| PLN02550 | 591 | threonine dehydratase | 89.91 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 89.87 | |
| COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) sub | 89.02 | |
| cd04935 | 75 | ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK | 88.56 | |
| cd04932 | 75 | ACT_AKiii-LysC-EC_1 ACT domains located C-terminal | 88.1 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 88.06 | |
| COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [A | 87.98 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 86.9 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 86.36 | |
| cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type | 86.32 | |
| cd04907 | 81 | ACT_ThrD-I_2 Second of two tandem C-terminal ACT d | 86.11 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 85.71 | |
| cd04912 | 75 | ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter | 85.6 | |
| cd08417 | 200 | PBP2_Nitroaromatics_like The C-terminal substrate | 84.55 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 83.54 | |
| PF12974 | 243 | Phosphonate-bd: ABC transporter, phosphonate, peri | 83.38 | |
| cd04934 | 73 | ACT_AK-Hom3_1 CT domains located C-terminal to the | 83.05 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 80.98 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 80.28 | |
| cd04891 | 61 | ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- | 80.12 |
| >PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-94 Score=729.36 Aligned_cols=348 Identities=31% Similarity=0.476 Sum_probs=323.1
Q ss_pred CCcchhhhHHHhhhchhhHHHHHhhhhcccccccccC--C-----C-CCCchhhHHHHHhhhhcc-CCCCccccccCCCc
Q 015945 26 PNRCGFGLDLRVLNKWECTCVGVLAQTHRAITPVEDD--R-----P-YTPDVQSSEANERSQDSQ-SSGFHKDLNLLPKP 96 (398)
Q Consensus 26 ~~l~~lR~~Id~iD~~~~~i~~ll~~~~R~~~~~~v~--k-----~-~~P~rE~~~il~rl~~~~-~G~lp~~~i~~~~~ 96 (398)
.+|+++|.+||+||++ |++||+| |++++.+|| | | |+|+|| +++++++.+.. .++++++.++ .
T Consensus 5 ~~L~~lR~~ID~ID~~---ii~Ll~~--R~~~~~~I~~~K~~~~~pi~dp~RE-~~vl~~~~~~a~~~~l~~~~i~---~ 75 (386)
T PRK10622 5 NPLLALREKISALDEK---LLALLAE--RRELAVEVAKAKLLSHRPVRDIDRE-RDLLERLITLGKAHHLDAHYIT---R 75 (386)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHhCCCCCcChHHH-HHHHHHHHHhcccCCCCHHHHH---H
Confidence 4799999999999999 9999999 999999999 4 6 999999 99999988754 4779999999 5
Q ss_pred cchhhcccCCCCCce-------------eEEEEEcCCCcHHHHHHHHhCCC--Cc--cccCCCHHHHHHHHHcCCccEEE
Q 015945 97 LSIMELSSSPDDGTK-------------VRVAYQGLPGAYSEAAARKAYPK--CE--TVPCDQFEAAFKAVELWLVDKAV 159 (398)
Q Consensus 97 I~R~iis~s~~~q~~-------------~kVa~lGp~Gs~s~~AA~~~fg~--~~--~~~~~s~~~v~~aV~~g~~d~gv 159 (398)
||+.||.+|+..|.. .+||||||+|||||+||+.+|+. .+ .++|.||++||++|++|++||||
T Consensus 76 if~~ii~~S~~~Q~~~~~~~~~~~~~~~~~va~lGp~GtfSh~Aa~~~~~~~~~~~~~~~~~s~~~v~~av~~g~~d~gV 155 (386)
T PRK10622 76 LFQLIIEDSVLTQQALLQQHLNKTNPHSARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAV 155 (386)
T ss_pred HHHHHHHHHHHHhhhhhhccccccccccceEEEECCCCcHHHHHHHHhhccccccccccCCCCHHHHHHHHHCCCCCEEE
Confidence 999999999887744 78999999999999999988863 22 34899999999999999999999
Q ss_pred EeeccccccchHHhHHhhhcCCeEEEEEEEEeeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhh-cCCeEEecCCHH
Q 015945 160 LPIENSVGGSIHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSN-LGIVRISADDTA 238 (398)
Q Consensus 160 VPIENS~~G~V~~tld~L~~~~l~I~~Ei~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~-~~~~~v~~~STA 238 (398)
||||||++|.|.+|||+|.+++++|+||+.+||+|||++.+|.++++|++||||||||+||++||++ ++++.++++|||
T Consensus 156 vPiENS~~G~V~~t~DlL~~~~l~I~~E~~l~I~h~Ll~~~~~~l~~I~~V~SHpqal~QC~~fL~~~p~~~~~~~~sTa 235 (386)
T PRK10622 156 LPIENTSSGAINDVYDLLQHTSLSIVGEMTLPIDHCVLVSGTTDLSTIETVYSHPQPFQQCSQFLNRYPHWKIEYTESTA 235 (386)
T ss_pred EEEecCCceehHHHHHHHhcCCCEEEEEEEEEEEEEEecCCCCCHHHCeEEEEehHHHHHHHHHHHHCCCceEEEcCChH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 589999999999
Q ss_pred HHHHHHHhcCCCCeEEEcCHHhHHHcCCceeecccccCCCCceEEEEEecCCCCCCCCCCceEEEEEEeCCCcchHHHHH
Q 015945 239 GAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREPIIAGTDRPYKTSIVFTLEEGPGMLFKAL 318 (398)
Q Consensus 239 ~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il~~~I~D~~~N~TRF~vi~~~~~~~~~~~~~ktsi~f~~~~~pGaL~~~L 318 (398)
+||++|++.+.++.|||||+.||++|||+||+++|||.++|+|||+||++.+..+...+.+||||+|+++|+||+|+++|
T Consensus 236 ~Aa~~v~~~~~~~~AAI~s~~aa~~ygL~vl~~~I~D~~~N~TRF~vi~~~~~~~~~~~~~ktsl~~~~~~~pGaL~~~L 315 (386)
T PRK10622 236 AAMEKVAQANSPHVAALGSEAGGALYGLQVLERNLANQQQNITRFIVLARKAINVSDQVPAKTTLLMATGQQAGALVEAL 315 (386)
T ss_pred HHHHHHHhcCCCCEEEECCHHHHHHcCCcChhhcCcCCccccceEEEEecCCCCCCCCCCCcEEEEEEcCCCCcHHHHHH
Confidence 99999998777788999999999999999999999999999999999999863222234579999999999999999999
Q ss_pred HHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCCC
Q 015945 319 AVFALRDINLTKIESRPQRKRPLRVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMDT 396 (398)
Q Consensus 319 ~~F~~~~INLt~IESRP~~~~~~~~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L~~~~~~vkiLGsYp~~~ 396 (398)
++|+.+|||||+|||||+++++ |+|.||||++||.+|+.++++|++|++.|.++|+|||||+..
T Consensus 316 ~~Fa~~giNLtkIeSRP~~~~~--------------~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~kvLGsYp~~~ 379 (386)
T PRK10622 316 LVLRNHNLIMTKLESRPIHGNP--------------WEEMFYLDVQANLRSAEMQKALKELGEITRSLKVLGCYPSEN 379 (386)
T ss_pred HHHHHcCCCeeEEEeeecCCCC--------------ceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcEEEeeeecCCc
Confidence 9999999999999999999865 999999999999999999999999999999999999999763
|
|
| >COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02317 arogenate dehydratase | Back alignment and domain information |
|---|
| >PRK11899 prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK11898 prephenate dehydratase; Provisional | Back alignment and domain information |
|---|
| >KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF00800 PDT: Prephenate dehydratase Caution this is only a partial structure | Back alignment and domain information |
|---|
| >PRK06034 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) | Back alignment and domain information |
|---|
| >cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) | Back alignment and domain information |
|---|
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
| >cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes | Back alignment and domain information |
|---|
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
| >TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form | Back alignment and domain information |
|---|
| >TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric | Back alignment and domain information |
|---|
| >TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein | Back alignment and domain information |
|---|
| >TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1 | Back alignment and domain information |
|---|
| >PRK07248 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2 | Back alignment and domain information |
|---|
| >TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2 | Back alignment and domain information |
|---|
| >TIGR01799 CM_T chorismate mutase domain of T-protein | Back alignment and domain information |
|---|
| >TIGR01803 CM-like chorismate mutase related enzymes | Back alignment and domain information |
|---|
| >PRK06443 chorismate mutase; Validated | Back alignment and domain information |
|---|
| >PRK06285 chorismate mutase; Provisional | Back alignment and domain information |
|---|
| >TIGR01791 CM_archaeal chorismate mutase, archaeal type | Back alignment and domain information |
|---|
| >PRK07075 isochorismate-pyruvate lyase; Reviewed | Back alignment and domain information |
|---|
| >COG1605 PheA Chorismate mutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type | Back alignment and domain information |
|---|
| >PRK09239 chorismate mutase; Provisional | Back alignment and domain information |
|---|
| >PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5 | Back alignment and domain information |
|---|
| >TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type | Back alignment and domain information |
|---|
| >PRK07857 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >smart00830 CM_2 Chorismate mutase type II | Back alignment and domain information |
|---|
| >TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric | Back alignment and domain information |
|---|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01806 CM_mono2 chorismate mutase, putative | Back alignment and domain information |
|---|
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
| >PRK09269 chorismate mutase; Provisional | Back alignment and domain information |
|---|
| >PRK08055 chorismate mutase; Provisional | Back alignment and domain information |
|---|
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
| >cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
| >cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
| >cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
|---|
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
| >cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >COG4492 PheB ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
| >cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
| >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
| >COG1707 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein | Back alignment and domain information |
|---|
| >cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
| >COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
| >cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
| >cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
| >cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold | Back alignment and domain information |
|---|
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
| >PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A | Back alignment and domain information |
|---|
| >cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains | Back alignment and domain information |
|---|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 398 | ||||
| 2qmx_B | 283 | The Crystal Structure Of L-Phe Inhibited Prephenate | 4e-61 | ||
| 3mwb_A | 313 | The Crystal Structure Of Prephenate Dehydratase In | 1e-25 | ||
| 2qmw_A | 267 | The Crystal Structure Of The Prephenate Dehydratase | 1e-15 | ||
| 3luy_A | 329 | Putative Chorismate Mutase From Bifidobacterium Ado | 2e-06 | ||
| 1phz_A | 429 | Structure Of Phosphorylated Phenylalanine Hydroxyla | 2e-04 |
| >pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate Dehydratase From Chlorobium Tepidum Tls Length = 283 | Back alignment and structure |
|
| >pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex With L-Phe From Arthrobacter Aurescens To 2.0a Length = 313 | Back alignment and structure |
| >pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt) From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 267 | Back alignment and structure |
| >pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium Adolescentis Length = 329 | Back alignment and structure |
| >pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase Length = 429 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Length = 283 | Back alignment and structure |
|---|
Score = 416 bits (1071), Expect = e-146
Identities = 136/293 (46%), Positives = 173/293 (59%), Gaps = 25/293 (8%)
Query: 110 TKVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGS 169
T +AYQG PGAYSE AA + E +PC+ F+ F AV D AV+PIENS+GGS
Sbjct: 5 TNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGS 61
Query: 170 IHRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLS-NLG 228
IH+NYDLLLR + I+ E + V HCLLGLPG E + SHPQAL QC + +
Sbjct: 62 IHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQ 121
Query: 229 IVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAR 288
I +A DTAG+A+MVA ++ A+AS +A E+YGLDIL E + D++ N+TRF +A
Sbjct: 122 IRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAH 181
Query: 289 EPIIAGTDRP-------YKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPL 341
E + KTSIVF L G LF+ALA FALR I+LTKIESRP RK+
Sbjct: 182 ENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA- 240
Query: 342 RVVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPM 394
F+YLFY DF D AL +L+EFAT ++VLG Y +
Sbjct: 241 -------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGV 280
|
| >3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Length = 313 | Back alignment and structure |
|---|
| >2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Length = 267 | Back alignment and structure |
|---|
| >3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Length = 329 | Back alignment and structure |
|---|
| >1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Length = 429 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 398 | |||
| 2qmx_A | 283 | Prephenate dehydratase; APC86053, L-Phe inhibition | 100.0 | |
| 3mwb_A | 313 | Prephenate dehydratase; L-Phe, PSI, MCSG, structur | 100.0 | |
| 2qmw_A | 267 | PDT, prephenate dehydratase; APC85812, prephenate | 100.0 | |
| 3luy_A | 329 | Probable chorismate mutase; structural genomics, A | 100.0 | |
| 1phz_A | 429 | Protein (phenylalanine hydroxylase); aromatic amin | 99.81 | |
| 2d8d_A | 90 | Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase | 99.49 | |
| 3ret_A | 101 | Salicylate biosynthesis protein PCHB; intertwined | 99.41 | |
| 1ecm_A | 109 | Endo-oxabicyclic transition state analogue; P-prot | 99.39 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 99.28 | |
| 3rmi_A | 114 | Chorismate mutase protein; emerald biostructures, | 99.27 | |
| 2gtv_X | 104 | CM, chorismate mutase; four-helix bundle, isomeras | 99.23 | |
| 1ybz_A | 91 | Chorismate mutase; conserved hypothetical protein, | 99.16 | |
| 2vkl_A | 90 | RV0948C/MT0975; helical, intracellular, chorismate | 99.11 | |
| 2gbb_A | 156 | Putative chorismate mutase; alpha helical bundle, | 98.26 | |
| 2fp1_A | 166 | Chorismate mutase; alpha-helical, isomerase; 1.55A | 98.18 | |
| 2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+b | 96.75 | |
| 1zpv_A | 91 | ACT domain protein; structural genomics, PSI, prot | 96.63 | |
| 2f1f_A | 164 | Acetolactate synthase isozyme III small subunit; f | 96.2 | |
| 2pc6_A | 165 | Probable acetolactate synthase isozyme III (small; | 96.12 | |
| 2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory s | 95.86 | |
| 1y7p_A | 223 | Hypothetical protein AF1403; structural genomics, | 94.01 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 92.2 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 91.82 | |
| 1wdn_A | 226 | GLNBP, glutamine binding protein; closed form, com | 91.72 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 91.61 | |
| 4f3p_A | 249 | Glutamine-binding periplasmic protein; ssgcid, str | 89.85 | |
| 3h7m_A | 234 | Sensor protein; histidine kinase sensor domain, ki | 89.82 | |
| 3mpk_A | 267 | Virulence sensor protein BVGS; venus flytrap, sens | 89.56 | |
| 3k4u_A | 245 | Binding component of ABC transporter; structural g | 89.2 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 88.8 | |
| 1xt8_A | 292 | Putative amino-acid transporter periplasmic solut | 88.28 | |
| 3kzg_A | 237 | Arginine 3RD transport system periplasmic binding | 87.31 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 85.7 | |
| 2qpq_A | 301 | Protein BUG27; alpha/beta domain, venus flytrap, t | 84.04 | |
| 3lou_A | 292 | Formyltetrahydrofolate deformylase; structural gen | 83.86 | |
| 3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural gen | 82.76 | |
| 3del_B | 242 | Arginine binding protein; alpha and beta protein ( | 82.72 | |
| 3obi_A | 288 | Formyltetrahydrofolate deformylase; structural gen | 81.38 | |
| 3tql_A | 227 | Arginine-binding protein; transport and binding pr | 80.92 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 80.31 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 80.1 |
| >2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-85 Score=637.41 Aligned_cols=268 Identities=50% Similarity=0.761 Sum_probs=255.1
Q ss_pred eeEEEEEcCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEEE
Q 015945 111 KVRVAYQGLPGAYSEAAARKAYPKCETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQL 190 (398)
Q Consensus 111 ~~kVa~lGp~Gs~s~~AA~~~fg~~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~l 190 (398)
.++|+||||+|||||+||+++| ++++|.||++||++|++|++||||||||||++|.|.+|||+|.+++++|+||+.+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l 82 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFV 82 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEE
Confidence 4689999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCcee
Q 015945 191 VVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNL-GIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDIL 269 (398)
Q Consensus 191 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~~-~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il 269 (398)
||+|||++++|.++++|++||||||||+||++||+++ +++.++++|||+||++|+++++++.|||||+.||++|||+||
T Consensus 83 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il 162 (283)
T 2qmx_A 83 KVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDIL 162 (283)
T ss_dssp ECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEE
T ss_pred eeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCcee
Confidence 9999999999999999999999999999999999994 999999999999999999887778999999999999999999
Q ss_pred ecccccCCCCceEEEEEecCCCCC-------CCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCCc
Q 015945 270 AEKIQDDDDNVTRFLILAREPIIA-------GTDRPYKTSIVFTLEEGPGMLFKALAVFALRDINLTKIESRPQRKRPLR 342 (398)
Q Consensus 270 ~~~I~D~~~N~TRF~vi~~~~~~~-------~~~~~~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IESRP~~~~~~~ 342 (398)
++||||.++|+|||+||++++... .+++.+||||+|+++|+||+|+++|+.|+.+|||||||||||+++++
T Consensus 163 ~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~-- 240 (283)
T 2qmx_A 163 KENLADEEWNITRFFCIAHENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA-- 240 (283)
T ss_dssp ESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCEEEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSST--
T ss_pred cccCcCCCCCeeeEEEEecCccccccccccCCCCCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCC--
Confidence 999999999999999999986430 12346899999999999999999999999999999999999999864
Q ss_pred cccCCCCCCCcccceEEEEEeecCCCcHHHHHHHHHHHHhcCceEEEccccCC
Q 015945 343 VVDDSNKGSAKYFDYLFYIDFEASMADPRAQFALGHLQEFATFLRVLGCYPMD 395 (398)
Q Consensus 343 ~~~~~~~g~~~~~~y~Ffvd~~g~~~d~~v~~al~~L~~~~~~vkiLGsYp~~ 395 (398)
|+|.|||||+||.+|++++++|++|++.|.++|+|||||+.
T Consensus 241 ------------~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~ 281 (283)
T 2qmx_A 241 ------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVV 281 (283)
T ss_dssp ------------TEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred ------------cceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEEeeeeeCC
Confidence 99999999999999999999999999999999999999965
|
| >3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} | Back alignment and structure |
|---|
| >2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 | Back alignment and structure |
|---|
| >3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} | Back alignment and structure |
|---|
| >1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A | Back alignment and structure |
|---|
| >2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A | Back alignment and structure |
|---|
| >3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A | Back alignment and structure |
|---|
| >1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1 | Back alignment and structure |
|---|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
| >3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae} | Back alignment and structure |
|---|
| >2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3 | Back alignment and structure |
|---|
| >1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1 | Back alignment and structure |
|---|
| >2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C* | Back alignment and structure |
|---|
| >2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str} | Back alignment and structure |
|---|
| >2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A* | Back alignment and structure |
|---|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
|---|
| >1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 | Back alignment and structure |
|---|
| >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
| >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 | Back alignment and structure |
|---|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A | Back alignment and structure |
|---|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
| >4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
| >3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A | Back alignment and structure |
|---|
| >3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
| >1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 | Back alignment and structure |
|---|
| >3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
| >2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} | Back alignment and structure |
|---|
| >3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} | Back alignment and structure |
|---|
| >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 | Back alignment and structure |
|---|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 398 | ||||
| d2qmwa1 | 184 | c.94.1.1 (A:1-184) Prephenate dehydratase {Staphyl | 2e-48 | |
| d2qmwa2 | 80 | d.58.18.3 (A:185-264) Prephenate dehydratase C-ter | 6e-22 | |
| d1phza1 | 97 | d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-t | 4e-19 |
| >d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Prephenate dehydratase species: Staphylococcus aureus [TaxId: 1280]
Score = 160 bits (406), Expect = 2e-48
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 6/182 (3%)
Query: 113 RVAYQGLPGAYSEAAARKAYPKCET--VPCDQFEAAFKAVELWLVDKAVLPIENSVGGSI 170
++ Y G G +S A R+ + + E P KAV V+PIENS+ G+I
Sbjct: 2 QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 61
Query: 171 HRNYDLLLRHRLHIVGEVQLVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIV 230
+ D L + + GE++L +N L G ++K+V+S A++Q +
Sbjct: 62 NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 121
Query: 231 RISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDILAEKIQDDDDNVTRFLILAREP 290
D T + + E A+A + E YG + I+D NVTRFL++ +
Sbjct: 122 YDYVDSTIQSLTKI----ENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 177
Query: 291 II 292
Sbjct: 178 QF 179
|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 80 | Back information, alignment and structure |
|---|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 398 | |||
| d2qmwa1 | 184 | Prephenate dehydratase {Staphylococcus aureus [Tax | 100.0 | |
| d2qmwa2 | 80 | Prephenate dehydratase C-terminal domain {Staphylo | 99.91 | |
| d1phza1 | 97 | Phenylalanine hydroxylase N-terminal domain {Rat ( | 99.89 | |
| d2d8da1 | 80 | Chorismate mutase domain of P-protein {Thermus the | 99.39 | |
| d2h9da1 | 94 | Salicylate biosynthesis protein PchB {Pseudomonas | 99.3 | |
| d1ecma_ | 91 | Chorismate mutase domain of P-protein {Escherichia | 99.26 | |
| d1ybza1 | 74 | mono-domain chorismate mutase {Pyrococcus furiosus | 99.23 | |
| d2gtvx1 | 93 | Chorismate mutase-like protein MJ0246 {Methanococc | 99.03 | |
| d2fp1a1 | 165 | Secreted chorismate mutase {Mycobacterium tubercul | 97.52 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 97.23 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 97.09 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 97.06 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 97.06 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 96.59 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 96.55 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 96.54 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 96.44 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 96.2 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 95.31 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 93.66 | |
| d1xt8a1 | 248 | Putative amino-acid transporter CjaA {Campylobacte | 89.53 | |
| d1wdna_ | 223 | Glutamine-binding protein {Escherichia coli [TaxId | 88.75 | |
| d1tdja2 | 88 | Allosteric threonine deaminase C-terminal domain { | 83.85 |
| >d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Periplasmic binding protein-like II superfamily: Periplasmic binding protein-like II family: Phosphate binding protein-like domain: Prephenate dehydratase species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.5e-55 Score=401.92 Aligned_cols=177 Identities=26% Similarity=0.355 Sum_probs=168.2
Q ss_pred eEEEEEcCCCcHHHHHHHHhCCC--CccccCCCHHHHHHHHHcCCccEEEEeeccccccchHHhHHhhhcCCeEEEEEEE
Q 015945 112 VRVAYQGLPGAYSEAAARKAYPK--CETVPCDQFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQ 189 (398)
Q Consensus 112 ~kVa~lGp~Gs~s~~AA~~~fg~--~~~~~~~s~~~v~~aV~~g~~d~gvVPIENS~~G~V~~tld~L~~~~l~I~~Ei~ 189 (398)
|||+||||+|||||+||+++|+. ..++++.||++||++|.+|++||||||||||++|.|.+|+|+|.+++++|+||+.
T Consensus 1 mki~yLGp~GtfS~~Aa~~~f~~~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~D~L~~~~~~I~~E~~ 80 (184)
T d2qmwa1 1 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEIR 80 (184)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEEEE
T ss_pred CEEEEeCCCChHHHHHHHHhcccCCceeeecCCHHHHHHHHHcCCCceeEEEeecccccchHHHHHhhhccCceeEeeec
Confidence 69999999999999999999984 5788999999999999999999999999999999999999999999999999999
Q ss_pred EeeeEeeecCCCCCccCccEEEecHHHHHHHHHHHhhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcCHHhHHHcCCcee
Q 015945 190 LVVNHCLLGLPGVLKEELKRVFSHPQALAQCEMTLSNLGIVRISADDTAGAAQMVASIGERDTGAVASAQAAEIYGLDIL 269 (398)
Q Consensus 190 l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~fl~~~~~~~v~~~STA~Aa~~v~~~~~~~~AAI~s~~aA~~ygL~il 269 (398)
+||+|||+++++.++++|++||||||||+||++||+++.++.+.++||++||+.+. ++.|||||+.||++|||+||
T Consensus 81 l~I~h~Ll~~~~~~l~~I~~V~SHpqal~QC~~~l~~~~~~~~~~~sta~aa~~~~----~~~aAIas~~aa~~ygL~il 156 (184)
T d2qmwa1 81 LDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPI 156 (184)
T ss_dssp EECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCB----TTEEEEEETTTSGGGTCCEE
T ss_pred ccchhhhcccccccccccceEEEecchHHHHHHHHHhhccchhhhhhHHHHHhhhh----hhhhccccHhHHHHcCChhh
Confidence 99999999999999999999999999999999999998888889999999998763 36899999999999999999
Q ss_pred ecccccCCCCceEEEEEecCCCC
Q 015945 270 AEKIQDDDDNVTRFLILAREPII 292 (398)
Q Consensus 270 ~~~I~D~~~N~TRF~vi~~~~~~ 292 (398)
+++|||.++|+|||+||+|++..
T Consensus 157 ~~~I~D~~~N~TRF~vi~~~~~~ 179 (184)
T d2qmwa1 157 DTHIEDYPHNVTRFLVIKNQQQF 179 (184)
T ss_dssp EECCCSCSCCEEEEEEEESCCCC
T ss_pred hhCCCCCCCCeEeEEEEecCCcC
Confidence 99999999999999999998643
|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
| >d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|