Citrus Sinensis ID: 015947

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRKLVLNRKLCLNLHGVTICWIQL
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccHHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccHcccccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccEHHHHHccccEEEEEHHHHHHHHHHccHHHccccHHHHccccEEEEcccccccHHHHHHHHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccHHHccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcEEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
mgymcdfcgdqrsivycrsdaaclclscdRNVHLANALSKRHSRTLLcercnsqpalVRCAEERVSLCqncdwighgtstsasshkrqtincysgcpsaselSSIWSFvldfpsggesacEQELGLmsitdnsiknswgpnedsisqnaagggveandvcdadksnvrvgatsvpginsttqnrdqihgsannpplpklccsatkdlafcedddlyedfnmdemdlnFENYEELFGVTLNHSeellenggieslfgtkdmsaadsnCQGAVAAegssaglvnamqpacsnaasadsimstktepilcftakqghsslsfsgltgdsnagdyqecdassmllmgeppwcppcpetsftsasRSKAVLRYKEKKKTRKLVLNRKLCLnlhgvticwiql
Flexible Loop (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGtstsasshkrqTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVgatsvpginsttqnrDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPEtsftsasrskavlrykekkktrklvlnrklclnlhgvticwiql
Low Complexity Region (SEG)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRKLVLNRKLCLNLHGVTICWIQL
Disordered region (IsUnstruct)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGT*********QTINCYSGCPSASELSSIWSFVLDFPSGG***C***LGL***********************************************************************KLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLF************************************************PILCFTA******************************L*****WC****************VLRYKEKKKTRKLVLNRKLCLNLHGVTICWI**
Disordered Region (DISOPRED)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI***************INCYSGCP***************************************************A*GGGVEANDVCDADKSNVRVGATSVPG**********************************EDDDLYEDFNMDEMDLNFENYEELFGVTLNH********************************************************************************************CDA**M*************************VLRYKEKKKTRKLVLNRKLCLNLHGVTICWIQL
Disordered Region (DISEMBL)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHG***********TINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRKLVLNRKLCLNLHGVTICWIQL
Disordered Region (DISPRO)
**YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD********************************************ANDV**ADKSNV**GA*S********************PPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAAD*NC**********************************************************SNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRKLVLNRKLCLNLHGVTICWIQL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLRYKEKKKTRKLVLNRKLCLNLHGVTICWIQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q9SSE5	372	Zinc finger protein CONST	yes	no	0.801	0.854	0.530	1e-103
Q9LUA9	373	Zinc finger protein CONST	no	no	0.813	0.865	0.525	4e-96
Q9LJ44	364	Zinc finger protein CONST	no	no	0.798	0.870	0.313	8e-36
O23379	330	Putative zinc finger prot	no	no	0.274	0.330	0.504	1e-27
O22800	402	Zinc finger protein CONST	no	no	0.267	0.263	0.443	2e-26
Q9C7E8	433	Zinc finger protein CONST	no	no	0.317	0.290	0.414	3e-26
Q9C9F4	356	Putative zinc finger prot	no	no	0.274	0.306	0.455	3e-24
O82256	332	Zinc finger protein CONST	no	no	0.251	0.301	0.470	2e-22
Q940T9	362	Zinc finger protein CONST	no	no	0.226	0.248	0.422	7e-15
Q9SK53	294	Zinc finger protein CONST	no	no	0.267	0.360	0.383	4e-13

>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/390 (53%), Positives = 253/390 (64%), Gaps = 72/390 (18%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query: 61  AEERVSLCQNCDWIGH---------GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
            EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct: 61  VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query: 112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
               G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct: 121 L--AGQSICEQELGMMNIDDD------GPTD--------------KKTCNEDKKDVLVGS 158

Query: 172 TSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENY 231
           +S+P  +S  Q +                 S+ KD+  CE DD Y +  MDE+D+  ENY
Sbjct: 159 SSIPETSSVPQGKS----------------SSAKDVGMCE-DDFYGNLGMDEVDMALENY 201

Query: 232 EELFGVTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNA 291
           EELFG   N SEEL  +GGI+SLF            +   A EG      N++QPA SN 
Sbjct: 202 EELFGTAFNPSEELFGHGGIDSLFH-----------KHQTAPEGG-----NSVQPAGSN- 244

Query: 292 ASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSML-LMGEPPWCPP 350
              DS MS+KTEPI+CF +K  HS++SFSG+TG+S+AGD+QEC ASS + L GEPPW PP
Sbjct: 245 ---DSFMSSKTEPIICFASKPAHSNISFSGVTGESSAGDFQECGASSSIQLSGEPPWYPP 301

Query: 351 CPETSFT---SASRSKAVLRYKEKKKTRKL 377
             + +     S +R+ AV+RYKEKKK RK 
Sbjct: 302 TLQDNNACSHSVTRNNAVMRYKEKKKARKF 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1

 Score =  351 bits (901), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 203/386 (52%), Positives = 243/386 (62%), Gaps = 63/386 (16%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1   MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query: 61  AEERVSLCQNCDWIGH--GTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
           ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct: 61  SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query: 117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPG 176
           ESACEQ +GLM+I ++                  G G         +KS V+      P 
Sbjct: 121 ESACEQGMGLMTIDED------------------GTG---------EKSGVQKINVEQPE 153

Query: 177 INSTTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFG 236
            +S  Q  D      N+        S  K+L  CEDD    +   DE+DL  ENYEELFG
Sbjct: 154 TSSAAQGMDHSSVPENS--------SMAKELGVCEDD-FNGNLISDEVDLALENYEELFG 204

Query: 237 VTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADS 296
              N S  L E+GGI SLF   +            A EGS        QPA SN ASADS
Sbjct: 205 SAFNSSRYLFEHGGIGSLFEKDE------------AHEGS------MQQPALSNNASADS 246

Query: 297 IMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSM-LLMGEP-PWCPPCPET 354
            M+ +TEPI+C+++K  HS++SFSG+TG+SNAGD+Q+C ASSM  L  EP PWC P  + 
Sbjct: 247 FMTCRTEPIICYSSKPAHSNISFSGITGESNAGDFQDCGASSMKQLSREPQPWCHPTAQD 306

Query: 355 SFTSA---SRSKAVLRYKEKKKTRKL 377
              S+   +R+ AV+RYKEKKK RK 
Sbjct: 307 IIASSHATTRNNAVMRYKEKKKARKF 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2

 Score =  151 bits (381), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 120/383 (31%), Positives = 180/383 (46%), Gaps = 66/383 (17%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC
Sbjct: 1   MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            +E+VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P       
Sbjct: 61  LDEKVSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVS----- 113

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
               GL+S                       G    ND+   + +      + VP   S 
Sbjct: 114 ----GLLS--------------------PFVGSFPLNDL---NNTMFDTAYSMVPHNISY 146

Query: 181 TQN-RDQI-HGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVT 238
           TQN  D +   S  +   P +     +      ++DL E  N+D+  LNF+  +++ G +
Sbjct: 147 TQNFSDNLSFFSTESKGYPDMVLKLEEG-----EEDLCEGLNLDDAPLNFDVGDDIIGCS 201

Query: 239 LN-HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSI 297
              H E          +  T   S   SN     A E S  G             + ++ 
Sbjct: 202 SEVHIEPDHTVPNCLLIDKTNTSSFTGSNFTVDKALEASPPG----------QQMNINTG 251

Query: 298 MSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFT 357
           +     P+L     Q H SL+   +TG++NA DYQ+C  S   +M E PW     ET+F 
Sbjct: 252 LQLPLSPVL---FGQIHPSLN---ITGENNAADYQDCGMSPGFIMSEAPW-----ETNFE 300

Query: 358 SA---SRSKAVLRYKEKKKTRKL 377
            +   +R++A LRYKEKK  R  
Sbjct: 301 VSCPQARNEAKLRYKEKKLKRSF 323

Arabidopsis thaliana (taxid: 3702)

>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=3 SV=2

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/111 (50%), Positives = 77/111 (69%), Gaps = 2/111 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M   CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C
Sbjct: 1   MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
             E VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+
Sbjct: 61  MNENVSLCQGCQWT--ASNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE 109

Arabidopsis thaliana (taxid: 3702)

>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 77/106 (72%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct: 12  CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVL 110
           + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   L
Sbjct: 72  LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWGIDL 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1

 Score =  119 bits (299), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 82/128 (64%), Gaps = 2/128 (1%)

Query: 5   CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
           CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct: 9   CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query: 65  VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
           + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +    Q  
Sbjct: 69  LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDEENQVP 126

Query: 125 GLMSITDN 132
            +  + DN
Sbjct: 127 MMAMMMDN 134

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 3/112 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct: 10  MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
            + ++ LC  C+   HG  +  S H+R+ + CY+GCP A + + +W F V+D
Sbjct: 70  FDHKMFLCHGCNDKFHGGGS--SEHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

Arabidopsis thaliana (taxid: 3702)

>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct: 12  LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
           R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct: 72  RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 50/90 (55%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
          +CD C    + +YCR DAA LCLSCD  VH AN L+ RH+R  +CE C   PA V C  +
Sbjct: 5  LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKAD 64

Query: 64 RVSLCQNCDWIGHGTSTSASSHKRQTINCY 93
            +LC  CD   H  +  A  H+R  +  +
Sbjct: 65 AAALCVTCDRDIHSANPLARRHERVPVTPF 94

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 4   MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
           +CD C    + ++CR+DAA LC  CD  +H AN L+ RH R  LCE C   PA V C  +
Sbjct: 7   LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66

Query: 64  RVSLCQNCDWIGHGTSTSASSHKRQTIN-CYSGCPSASELSSIWSFV 109
             +LC  CD   H  +  +  H+R  I   Y     A   SS  +FV
Sbjct: 67  AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV 113

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
255567234	414	transcription factor, putative [Ricinus	0.914	0.876	0.753	1e-148
359485854	415	PREDICTED: zinc finger protein CONSTANS-	0.942	0.901	0.700	1e-148
356547575	409	PREDICTED: zinc finger protein CONSTANS-	0.926	0.899	0.713	1e-147
356577552	446	PREDICTED: zinc finger protein CONSTANS-	0.926	0.825	0.716	1e-146
449444452	415	PREDICTED: zinc finger protein CONSTANS-	0.937	0.896	0.659	1e-140
224068779	379	predicted protein [Populus trichocarpa]	0.833	0.873	0.683	1e-134
302398767	409	COL domain class transcription factor [M	0.921	0.894	0.660	1e-131
224131908	379	predicted protein [Populus trichocarpa]	0.851	0.891	0.708	1e-129
356553042	411	PREDICTED: zinc finger protein CONSTANS-	0.904	0.873	0.702	1e-128
357462477	465	Zinc finger protein CONSTANS-LIKE protei	0.924	0.789	0.671	1e-128

>gi|255567234|ref|XP_002524598.1| transcription factor, putative [Ricinus communis] gi|223536151|gb|EEF37806.1| transcription factor, putative [Ricinus communis]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/369 (75%), Positives = 315/369 (85%), Gaps = 6/369 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RHSRTLLCERCNSQPAL+RC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPALIRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS-GGESA 119
           A+ER+SLCQ CDW+ HG S S+S+HKRQTINCY+GCPSASELSS+WSFVLDFPS  GES 
Sbjct: 61  ADERLSLCQKCDWMVHGNSNSSSTHKRQTINCYTGCPSASELSSLWSFVLDFPSVDGEST 120

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CEQELGLMSI ++S  N+WGP + +ISQN +G     N+ C+  KS+  VG +S P +  
Sbjct: 121 CEQELGLMSIAEDSSTNTWGPPDKTISQNVSGAAA-VNNACEIPKSSGCVGNSSAPQL-- 177

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTL 239
              N D   GSA N PLPKLCC  TK  A CE DDLYEDFNMDE+DLN ENYEELFG+ L
Sbjct: 178 MPNNLDHPAGSA-NAPLPKLCCPGTKGPALCE-DDLYEDFNMDEVDLNLENYEELFGIAL 235

Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMS 299
           N SEEL ENGGI+SLFG KDMSAADSNCQGAVAAEGSSAGLVNA+QPACSNAASADS+MS
Sbjct: 236 NDSEELFENGGIDSLFGMKDMSAADSNCQGAVAAEGSSAGLVNAVQPACSNAASADSMMS 295

Query: 300 TKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSA 359
            KTEPILCFTA+ GHS+LSFSGLTG+S+AGDYQ+C ASSM LMGEPPWCPPCPE+SF+SA
Sbjct: 296 AKTEPILCFTARPGHSNLSFSGLTGESSAGDYQDCGASSMFLMGEPPWCPPCPESSFSSA 355

Query: 360 SRSKAVLRY 368
           +R+ AV+RY
Sbjct: 356 NRNDAVMRY 364

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485854|ref|XP_002264506.2| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Vitis vinifera] gi|296085061|emb|CBI28476.3| unnamed protein product [Vitis vinifera]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 264/377 (70%), Positives = 303/377 (80%), Gaps = 3/377 (0%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRSIVYCRSDAA LCLSCDR+VH ANALS+RHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGEQRSIVYCRSDAASLCLSCDRHVHSANALSRRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW GHG ST+ SSHK++TINCYSGCPS+  LS++W FVLD PS G S C
Sbjct: 61  IEEKISLCQNCDWTGHGGSTTTSSHKKETINCYSGCPSSEGLSTMWPFVLDLPSTGNSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQ L LM + + S  NSWGP  +S  Q+A+   VE ND  + DKS++ +G++SVP +NS 
Sbjct: 121 EQGLSLMCLNETSEMNSWGPPGNSSRQDAS-LTVEVNDANNVDKSSILIGSSSVPELNSP 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
           +Q  DQ  GSA +  LPKL C  T DL FCEDD LYEDFNMDE+DLN ENYEELFGV L+
Sbjct: 180 SQKLDQPSGSA-DLTLPKLLCPGTDDLGFCEDDSLYEDFNMDEVDLNLENYEELFGVALS 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSE+L ENGGI+SLFG  D S ADS+CQGAV AEG S GL NA+QP  SNAASADSIMS+
Sbjct: 239 HSEQLFENGGIDSLFGKMDTSGADSHCQGAVIAEG-SVGLANAVQPTYSNAASADSIMSS 297

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT KQ HSSLSFSGLTG+S+AGDYQ+C AS   LMGEPPWCPP PE+S  S S
Sbjct: 298 KTEPILCFTGKQAHSSLSFSGLTGESSAGDYQDCGASPTFLMGEPPWCPPGPESSLPSTS 357

Query: 361 RSKAVLRYKEKKKTRKL 377
           RS AV+RY+EKKK RK 
Sbjct: 358 RSSAVMRYREKKKNRKF 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547575|ref|XP_003542186.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/377 (71%), Positives = 303/377 (80%), Gaps = 9/377 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVLD  +  ES C
Sbjct: 61  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLDIAAISESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K+   P E    QN +G   E  D    DKS   VG +S+P  +S 
Sbjct: 121 EQELGLMSINEN--KSVGVPPE---GQNVSGSD-EVTDQPALDKS--LVGTSSMPESSSK 172

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ    AN   L KL C ATK  A CE+D+LY+DFNMDE+DLN ENYEELFG+ L+
Sbjct: 173 PRILDQPARPANEC-LSKLYCPATKFPALCENDNLYDDFNMDEVDLNLENYEELFGMALS 231

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSEEL ENGGI+SLFGTKDMSA D +C+ A+AAEGSS G VN MQPACSNAASADSI+ST
Sbjct: 232 HSEELFENGGIDSLFGTKDMSAGDFSCEDAIAAEGSSVGQVNVMQPACSNAASADSILST 291

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT +Q  S+LSFSG+TGDS+AGDYQ+C ASSMLLMGEPPW  PCPE S  SA+
Sbjct: 292 KTEPILCFTGRQAQSNLSFSGVTGDSSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSAN 351

Query: 361 RSKAVLRYKEKKKTRKL 377
           RS AV+RYKEKKKTR  
Sbjct: 352 RSNAVMRYKEKKKTRMF 368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577552|ref|XP_003556888.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/377 (71%), Positives = 304/377 (80%), Gaps = 9/377 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTLLCERCNSQPA VRC
Sbjct: 38  MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLLCERCNSQPAFVRC 97

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EE++SLCQNCDW+GHGTSTS+S+HKRQ INCYSGCPSA+ELSSIWSFVL+  +  ES C
Sbjct: 98  VEEKISLCQNCDWLGHGTSTSSSTHKRQAINCYSGCPSAAELSSIWSFVLEIAAISESTC 157

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +N  K    P ED   QN +G   E  D+   +KS   VGA+ +P  +S 
Sbjct: 158 EQELGLMSINEN--KCVGVPPED---QNVSGSD-EVTDLPALNKS--LVGASLMPESSSE 209

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
               DQ  G  N   LPKL C ATK  A  EDD+LY+DFNMDE+DL+ ENYEELFG+ L+
Sbjct: 210 PCILDQPAGPTNEC-LPKLYCPATKCPALSEDDNLYDDFNMDEVDLDLENYEELFGMALS 268

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSEEL ENGGI+SLFGTK MSA DSNCQ A+AAEGSS G VNAMQPACSNAASADSI+ST
Sbjct: 269 HSEELFENGGIDSLFGTKGMSAGDSNCQEAIAAEGSSVGQVNAMQPACSNAASADSILST 328

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT +Q  S+LSFSG+TG+S+AGDYQ+C ASSMLLMGEPPW  PCPE S  SA+
Sbjct: 329 KTEPILCFTGRQTQSNLSFSGVTGESSAGDYQDCGASSMLLMGEPPWFAPCPENSLQSAN 388

Query: 361 RSKAVLRYKEKKKTRKL 377
           RS AV+RYKEKKKTR  
Sbjct: 389 RSNAVMRYKEKKKTRMF 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444452|ref|XP_004139988.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus] gi|449475645|ref|XP_004154511.1| PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Cucumis sativus]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/379 (65%), Positives = 295/379 (77%), Gaps = 7/379 (1%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MG+MCDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RH+RTLLCERC+ QP+ VRC
Sbjct: 1   MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRC 60

Query: 61  AEERVSLCQNCDWIGHGTST-SASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESA 119
            EERVSLCQNCDW GHG+ST ++SSHKRQTINCYSGCPSA+ELS IWSFVLD PS  + A
Sbjct: 61  IEERVSLCQNCDWTGHGSSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVND-A 119

Query: 120 CEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
           CE+ELGLMSI +  +  +W P+E++  Q   G   EA+DVC  +KSNV VG++S+ G   
Sbjct: 120 CEKELGLMSIAETDLTGAWSPSENNAGQRMPGS-TEASDVCSREKSNVLVGSSSLIGSRP 178

Query: 180 TTQNRDQIHGSANNPPLPKLCCSATKDLAFC-EDDDLYEDFNMDEMDLNFENYEELFGVT 238
            T ++       +N  LPK CC  TK   FC EDDDLY++F+MDEMDLN ENYE+LF ++
Sbjct: 179 HTSDQPV---ELDNVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEDLFSMS 235

Query: 239 LNHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIM 298
           LNHSEE  ENGGI+S F  K +S  DS    AV AEGSS G+V  MQPA SN ASADS+M
Sbjct: 236 LNHSEEFFENGGIDSFFEAKGLSFEDSVSHSAVVAEGSSMGVVQQMQPAYSNGASADSVM 295

Query: 299 STKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTS 358
           STKTEPILCF ++Q  S +SFSGLTG+S+AGD+Q+C ASSMLLMGEPPWC P  E+SF S
Sbjct: 296 STKTEPILCFNSRQAQSGMSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGTESSFPS 355

Query: 359 ASRSKAVLRYKEKKKTRKL 377
             R+ AV RYKEKKKTRK 
Sbjct: 356 TDRNSAVQRYKEKKKTRKF 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068779|ref|XP_002302823.1| predicted protein [Populus trichocarpa] gi|222844549|gb|EEE82096.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/370 (68%), Positives = 283/370 (76%), Gaps = 39/370 (10%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAACLCLSCD+ VH ANALSKRHSRTLLCERCNSQPALVR 
Sbjct: 1   MGYICDFCGEQRSMVYCRSDAACLCLSCDQIVHSANALSKRHSRTLLCERCNSQPALVRR 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EER+SLCQNCDW+G+G+STSAS+HKRQTINCY GCPS SELSS W F+LD PSGG S C
Sbjct: 61  VEERISLCQNCDWMGYGSSTSASTHKRQTINCYFGCPSVSELSSKWPFILDSPSGGGSTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS KN+WGP E++I  NA+G                 VGA+SVP  +S 
Sbjct: 121 EQELGLMSIAENSTKNTWGPTENTICHNASG----------------IVGASSVPESSSV 164

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +N DQ   S N+  LPK+C           D DLYEDFNM EMDLN ENYEELFGVTLN
Sbjct: 165 PKNLDQPTRSPNS-SLPKVC-----------DADLYEDFNMAEMDLNLENYEELFGVTLN 212

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           +SEEL ENGGI+SLFGTKDM   DSN            GLVN +QP CSNA S DS++S+
Sbjct: 213 NSEELFENGGIDSLFGTKDMPIVDSN-----------FGLVNTIQPTCSNAPSTDSMISS 261

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFTAKQGHSSLSFSGLTG+SNAGDYQ+C ASSMLLMGEP WCPPC E+   SA+
Sbjct: 262 KTEPILCFTAKQGHSSLSFSGLTGESNAGDYQDCGASSMLLMGEPSWCPPCLESPLPSAN 321

Query: 361 RSKAVLRYKE 370
           RS AV RY E
Sbjct: 322 RSDAVKRYME 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398767|gb|ADL36678.1| COL domain class transcription factor [Malus x domestica]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 249/377 (66%), Positives = 293/377 (77%), Gaps = 11/377 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGYMCD+C  QRS+V+CRSDAACLCLSCDRNVH ANALS+RH RTL+CERCNSQPALVRC
Sbjct: 1   MGYMCDYCQVQRSMVHCRSDAACLCLSCDRNVHSANALSRRHLRTLICERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            EERVSLCQNCDW+GH  STSAS HKRQT+NCYSGCPS++ELSSIWSFV D PS GESAC
Sbjct: 61  TEERVSLCQNCDWMGHQASTSASGHKRQTLNCYSGCPSSAELSSIWSFVSDLPSNGESAC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQE+GLMSI +NS ++ W   E +  Q+A+G   E N     +KS + VG++SVP  +  
Sbjct: 121 EQEMGLMSIAENSTRSEWSQTESNTRQSASGAD-EVNPAHSMEKSGILVGSSSVPERSHA 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
                Q+ GS  N  LPKL     K     EDDDLY+D +MDEM+LN ENY+ELFGV+LN
Sbjct: 180 RHVVGQLSGSV-NASLPKLYSHGGKGTGLPEDDDLYDDLDMDEMELNLENYDELFGVSLN 238

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           HSEEL +NGGI+SLFG K++S    +CQ AVAAEGSS GL NA QPACSNAASADS+MST
Sbjct: 239 HSEELFKNGGIDSLFGAKNVS---RDCQDAVAAEGSSFGLGNAPQPACSNAASADSVMST 295

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KT+P++CF AKQ HS+LSFSG+TG+S+AGD Q+C ASS       PW PPCPE+S  SA+
Sbjct: 296 KTDPVICFPAKQAHSNLSFSGITGESSAGDCQDCGASST------PWYPPCPESSMQSAN 349

Query: 361 RSKAVLRYKEKKKTRKL 377
           RS AV+RYKEKKK RK 
Sbjct: 350 RSNAVMRYKEKKKARKF 366

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131908|ref|XP_002321208.1| predicted protein [Populus trichocarpa] gi|222861981|gb|EEE99523.1| predicted protein [Populus trichocarpa]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 267/377 (70%), Positives = 297/377 (78%), Gaps = 39/377 (10%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCG+QRS+VYCRSDAA LCLSCDRNVH ANALSKRHSRTLLCERCNSQPALVRC
Sbjct: 1   MGYVCDFCGEQRSMVYCRSDAASLCLSCDRNVHSANALSKRHSRTLLCERCNSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
           AEER+SLCQNCDWIGHGTSTSAS+H+RQTIN YSGCPSASELSSIWSFVLDFPS GES C
Sbjct: 61  AEERISLCQNCDWIGHGTSTSASTHRRQTINSYSGCPSASELSSIWSFVLDFPSRGESTC 120

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS  +SWGP E++I QNA+ G VE ND  +  KS V +G++S+P  +S 
Sbjct: 121 EQELGLMSIAENSTTDSWGPTENTIGQNAS-GVVEVNDRREIAKSGVWLGSSSIPESSSV 179

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
             N DQ   SAN   LPK                   DFNMDEMDL+ ENYEELFGVTLN
Sbjct: 180 PNNLDQTTRSANT-SLPK-------------------DFNMDEMDLSLENYEELFGVTLN 219

Query: 241 HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST 300
           +SEELLENGGI+SLFGTKDMS                  +VNA+QPA SNAASADS+MS 
Sbjct: 220 NSEELLENGGIDSLFGTKDMS------------------VVNAVQPASSNAASADSMMSN 261

Query: 301 KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS 360
           KTEPILCFT KQGHSSLSFSGL  +S+A DYQ+C ASSMLLMGEPPWCPPCPE+ F+SA+
Sbjct: 262 KTEPILCFTEKQGHSSLSFSGLNVESSAADYQDCGASSMLLMGEPPWCPPCPESPFSSAN 321

Query: 361 RSKAVLRYKEKKKTRKL 377
           RS AV+RYKEKKKTR  
Sbjct: 322 RSDAVMRYKEKKKTRMF 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553042|ref|XP_003544867.1| PREDICTED: zinc finger protein CONSTANS-LIKE 10-like [Glycine max]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/370 (70%), Positives = 297/370 (80%), Gaps = 11/370 (2%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH ANALS+RHSRTL+CERCNSQPA VRC
Sbjct: 1   MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
            +E++SLCQNCDW+GHGTS S+S+HKRQ+INCYSGCPSA+E SSIWSF LD PS GE AC
Sbjct: 61  VDEKISLCQNCDWLGHGTSPSSSTHKRQSINCYSGCPSAAEFSSIWSFFLDIPSMGE-AC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELGLMSI +NS KN+W   E    QN +G   E  D+    KS    G +SVP  +S 
Sbjct: 120 EQELGLMSINENSNKNAWASPE---GQNVSGSA-EVTDLPSKGKS--WAGTSSVPESSSE 173

Query: 181 TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN 240
            +  DQ  G AN   +PKL C   K     EDDDLY+DF MDE+DL  ENYEELFG+ L+
Sbjct: 174 PRILDQPPGPANE-CMPKLYCPGKKVSGIYEDDDLYDDFIMDEVDLQLENYEELFGMALS 232

Query: 241 HSEELLENGGIESLFGTKDMSAA--DSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIM 298
           HSEEL ENGGI SLF TKDMSA+  DS+CQGAVAAEGSSA LVNA+QPACSNAASADS+M
Sbjct: 233 HSEELFENGGINSLFETKDMSASAGDSHCQGAVAAEGSSAELVNAIQPACSNAASADSMM 292

Query: 299 STKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTS 358
           STKTEPI+CFTA+Q  S++SFSG+T DS  GDYQ+C ASSMLLMGEPPWCPPCPE+S  S
Sbjct: 293 STKTEPIVCFTARQSLSNISFSGVTKDS-VGDYQDCGASSMLLMGEPPWCPPCPESSLHS 351

Query: 359 ASRSKAVLRY 368
           A+RS AV+RY
Sbjct: 352 ANRSNAVMRY 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462477|ref|XP_003601520.1| Zinc finger protein CONSTANS-LIKE protein [Medicago truncatula] gi|355490568|gb|AES71771.1| Zinc finger protein CONSTANS-LIKE protein [Medicago truncatula]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/380 (67%), Positives = 291/380 (76%), Gaps = 13/380 (3%)

Query: 1   MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
           MGY+CDFCGDQRS+VYCRSDAACLCLSCDRNVH AN L++RHSRTLLCERC+SQPALVRC
Sbjct: 1   MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRC 60

Query: 61  AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC 120
           +EE+VSLCQNCDW+GHG STS S+HKRQTINCYSGCPS++ELSSIWSFVLD PS  E+ C
Sbjct: 61  SEEKVSLCQNCDWLGHGNSTS-SNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTC 119

Query: 121 EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST 180
           EQELG MSI +N  +++W    D  +QN +    +A D+ D DKS    G +S+P  +  
Sbjct: 120 EQELGFMSINEN--RSAW---VDPKNQNVSDSD-KATDLPDLDKS--FAGTSSMPESSKE 171

Query: 181 TQNRDQIHGSANNPPLPKLCCSATK-DLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTL 239
            +  D+  GS N   +PKL C AT    A  +DDDLY DF+MDEMD+N ENY+ELFG+ L
Sbjct: 172 PRMLDRPDGSTNEC-VPKLYCPATNCREASDDDDDLYGDFDMDEMDINMENYDELFGMAL 230

Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMS 299
            HSEEL ENGG  SLFG K MSA DSNCQ A AAEGSS G VNA QPACS AASADSI+S
Sbjct: 231 THSEELFENGGFNSLFGAKAMSAGDSNCQDANAAEGSSIGHVNAAQPACSTAASADSILS 290

Query: 300 TKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPET--SFT 357
           TKTEP LC TAKQ  SSLSFSG+  D  AGDYQ+C ASSMLLMGEPPW   CPE      
Sbjct: 291 TKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQ 350

Query: 358 SASRSKAVLRYKEKKKTRKL 377
           SA+R  AV+RYKEKKKTRK 
Sbjct: 351 SANRCSAVMRYKEKKKTRKF 370

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2164718	373	BBX8 "B-box domain protein 8"	0.397	0.423	0.660	2.4e-85
TAIR|locus:2091082	372	COL9 "CONSTANS-like 9" [Arabid	0.408	0.435	0.601	2e-56
TAIR|locus:2129860	330	BBX9 "B-box domain protein 9"	0.269	0.324	0.518	5.3e-47
TAIR|locus:2088748	364	BBX10 "B-box domain protein 10	0.277	0.302	0.482	7.5e-42
TAIR|locus:2199262	356	BBX27 "B-box domain protein 27	0.274	0.306	0.455	6.8e-37
TAIR|locus:2010504	433	BBX13 "B-box domain protein 13	0.340	0.311	0.412	1.9e-33
TAIR|locus:2051104	402	BBX12 "B-box domain protein 12	0.297	0.293	0.416	7.9e-33
TAIR|locus:2043288	332	AT2G47890 [Arabidopsis thalian	0.251	0.301	0.470	3.7e-29
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.282	0.380	0.373	1.2e-17
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.352	0.394	0.375	4.1e-17

TAIR|locus:2164718 BBX8 "B-box domain protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
 Identities = 107/162 (66%), Positives = 125/162 (77%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60

Query:    61 AEERVSLCQNCDWIGHG--TSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
             ++ERVSLCQNCDW GH    ST+ S HKRQTINCYSGCPS++ELSSIWSF +D    S  
Sbjct:    61 SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120

Query:   117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEAND 158
             ESACEQ +GLM+I ++      G  + ++ Q       +  D
Sbjct:   121 ESACEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMD 162

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2091082 COL9 "CONSTANS-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 116/193 (60%), Positives = 137/193 (70%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct:     1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60

Query:    61 AEERVSLCQNCDWIGHG---------TSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
              EERVSLCQNCDW GH          +STS   HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct:    61 VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120

Query:   112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
                 G+S CEQELG+M+I D+      GP +                 C+ DK +V VG+
Sbjct:   121 L--AGQSICEQELGMMNIDDD------GPTDKK--------------TCNEDKKDVLVGS 158

Query:   172 TSVPGINSTTQNR 184
             +S+P  +S  Q +
Sbjct:   159 SSIPETSSVPQGK 171

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP;RCA

TAIR|locus:2129860 BBX9 "B-box domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 5.3e-47, Sum P(3) = 5.3e-47
 Identities = 57/110 (51%), Positives = 78/110 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP  V C  E 
Sbjct:     5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNEN 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS 114
             VSLCQ C W    ++ +   H+ Q++N YS CPS S+   IWS  L+ PS
Sbjct:    65 VSLCQGCQWTA--SNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE-PS 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2088748 BBX10 "B-box domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 54/112 (48%), Positives = 79/112 (70%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C   ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC +E+
Sbjct:     5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGG 116
             VS CQ C W  H ++ S   H+ Q++N +SGCPS ++ + +WS +L+ P  G
Sbjct:    65 VSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVSG 114

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2199262 BBX27 "B-box domain protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 6.8e-37, Sum P(3) = 6.8e-37
 Identities = 51/112 (45%), Positives = 75/112 (66%)

Query:     1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
             M  +C+FC   R++VYC +D A LCL+CD  VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct:    10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69

Query:    61 AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
              + ++ LC  C+   HG  +S   H+R+ + CY+GCP A + + +W F V+D
Sbjct:    70 FDHKMFLCHGCNDKFHGGGSS--EHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2010504 BBX13 "B-box domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
 Identities = 59/143 (41%), Positives = 94/143 (65%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P  VRC  + 
Sbjct:     9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ + + +H R  +  +SGCPSA EL+++W   LD   G +   E ++
Sbjct:    69 LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDE-ENQV 125

Query:   125 GLMSIT-DN-SIK-NSW--GPNE 142
              +M++  DN  ++ +SW  G NE
Sbjct:   126 PMMAMMMDNFGMQLDSWVLGSNE 148

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2051104 BBX12 "B-box domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
 Identities = 50/120 (41%), Positives = 82/120 (68%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P  VRC  + 
Sbjct:    12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
             + LCQ CDW  HG+ +S+++H+R  +  +SGCPS  EL+++W   +D     +   E EL
Sbjct:    72 LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWG--IDLKGKKKEDDEDEL 129

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2043288 AT2G47890 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 48/102 (47%), Positives = 69/102 (67%)

Query:     4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
             +CD+C    ++VYC++D+A LCL+CD+ VH+AN L  +H R+LLC+ CN  P+ + C  E
Sbjct:    12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71

Query:    64 RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
             R  LCQNCDW  H  + S+S H R+    ++GCPS  EL +I
Sbjct:    72 RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
 Identities = 43/115 (37%), Positives = 58/115 (50%)

Query:     4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
             +CD C    + ++CR+DAA LC  CD  +H AN L+ RH R  LCE C   PA V C  +
Sbjct:     7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66

Query:    64 RVSLCQNCDWIGHGTSTSASSHKRQTIN-CYSGCPSASELSSIWSFVLDFPSGGE 117
               +LC  CD   H  +  +  H+R  I   Y     A   SS  +FV +   GG+
Sbjct:    67 AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFVDE--DGGD 119

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
 Identities = 56/149 (37%), Positives = 70/149 (46%)

Query:     5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
             CD C      VYCR+D+A LC SCD  VH AN L+ RH R  +C+ C   PA   C  + 
Sbjct:    12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71

Query:    65 VSLCQNCDWIGHGTSTSASSHKRQTI---NCYSGCPSASELSSIWSFVLDFPS----GGE 117
              SLC  CD   H  +  A  H+R  I   + YS   +A+   S  + V D  +    G E
Sbjct:    72 ASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATN-HSCETTVTDPENRLVLGQE 130

Query:   118 SACEQELGLMS-ITDNSIKNSWGPNEDSI 145
                E E    S +  NS KNS   N  SI
Sbjct:   131 EEDEDEAEAASWLLPNSGKNSGNNNGFSI 159

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SSE5	COL9_ARATH	No assigned EC number	0.5307	0.8010	0.8548	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	3e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	4e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	7e-04

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
           CD  GD+ +  +C    A LC +CD   H      + H+  LL
Sbjct: 5  KCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 4  MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL 47
          +CD  G++   ++C +D A LC+ CD +VH        H R  L
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI 90
          LC+    +P  + C  +R  LC +CD   H      S H+R  +
Sbjct: 2  LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	98.5
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.23
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.09
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.83
smart00336	42	BBOX B-Box-type zinc finger.	96.75
smart00336	42	BBOX B-Box-type zinc finger.	96.12
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	95.79
KOG4367	699	consensus Predicted Zn-finger protein [Function un	94.24
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	83.97

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=98.50  E-value=3.4e-08  Score=73.03  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=26.2

Q ss_pred             HHHHHHHhHHhhhhccccceeeeeeecC
Q 015947          361 RSKAVLRYKEKKKTRKLVLNRKLCLNLH  388 (397)
Q Consensus       361 r~~a~~ry~ekkk~r~~~k~i~~~~~~~  388 (397)
                      |+++|+||+|||++|+|+|+|+|++|+.
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~   28 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKA   28 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHH
Confidence            6899999999999999999999999873

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.23  E-value=0.00021  Score=49.28  Aligned_cols=38  Identities=32%  Similarity=0.768  Sum_probs=33.3

Q ss_pred             cccccCCCCceeeecCCCcccCcccccCccCCCCCCCCCccccc
Q 015947           47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (397)
Q Consensus        47 LCd~C~s~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~pl   90 (397)
                      +|+.|..+++.+||..|.+.+|..|+..+|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6888988899999999999999999988764      7888775

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.09  E-value=0.00036  Score=48.06  Aligned_cols=39  Identities=38%  Similarity=0.809  Sum_probs=33.9

Q ss_pred             CCCCccCCCCeeEEecCCccccccccccccccccchhhccccccc
Q 015947            3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (397)
Q Consensus         3 ~~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpL   47 (397)
                      .+|+.++.+++.+||..|.+.+|..|+...|.      .|.++++
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36999999899999999999999999988774      6777664

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.83  E-value=0.00053  Score=48.53  Aligned_cols=41  Identities=27%  Similarity=0.525  Sum_probs=34.6

Q ss_pred             ccccccccCCCCceeeecCCCcccCcccccCccCCCCCCCCCccccc
Q 015947           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (397)
Q Consensus        44 RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~pl   90 (397)
                      +.+.|..|...++.+||..|...+|..|....|..      |..+||
T Consensus         2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             cCccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            35689999998899999999999999999998863      877765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=96.75  E-value=0.0012  Score=45.99  Aligned_cols=41  Identities=29%  Similarity=0.545  Sum_probs=34.7

Q ss_pred             ccccccccCCCCceeeecCCCcccCcccccCccCCCCCCCCCccccc
Q 015947           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI   90 (397)
Q Consensus        44 RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~pl   90 (397)
                      |..+|..|...++.+||..|...+|..|....|      +.|.+.+|
T Consensus         2 ~~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        2 RPPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             cCCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            567899999999999999999999999997755      46777654

>smart00336 BBOX B-Box-type zinc finger

Probab=96.12  E-value=0.0045  Score=43.13  Aligned_cols=40  Identities=35%  Similarity=0.687  Sum_probs=33.4

Q ss_pred             CCCCCccCCCCeeEEecCCccccccccccccccccchhhccccccc
Q 015947            2 GYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (397)
Q Consensus         2 ~~~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpL   47 (397)
                      ...|..++..++.+||..|.+.+|..|....|      +.|.+++|
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            36799999889999999999999999998766      46666553

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.79  E-value=0.0062  Score=43.03  Aligned_cols=40  Identities=18%  Similarity=0.337  Sum_probs=33.8

Q ss_pred             CCCCCccCCCCeeEEecCCccccccccccccccccchhhccccccc
Q 015947            2 GYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL   47 (397)
Q Consensus         2 ~~~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpL   47 (397)
                      ...|+.+...++.+||..+...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4689999999999999999999999999999864      766554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=94.24  E-value=0.013  Score=61.49  Aligned_cols=76  Identities=18%  Similarity=0.437  Sum_probs=60.7

Q ss_pred             CCCccCCC--CeeEEecCCccccccccccccccccchhhcccccc----------------cccccCCCCceeeecCCCc
Q 015947            4 MCDFCGDQ--RSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTL----------------LCERCNSQPALVRCAEERV   65 (397)
Q Consensus         4 ~Cd~C~~a--~A~VyC~aD~A~LC~~CD~~vHsAN~La~RH~Rvp----------------LCd~C~s~PA~v~C~~D~a   65 (397)
                      .|.+|+++  .|.|+|..+....|.-|..+.|-+-.-..+|.-++                .|.-+....-.+||..|++
T Consensus       164 kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck~  243 (699)
T KOG4367|consen  164 KCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKM  243 (699)
T ss_pred             hhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecCC
Confidence            58999988  48999999999999999999998766556665432                2555555567899999999


Q ss_pred             ccCcccccCccCCC
Q 015947           66 SLCQNCDWIGHGTS   79 (397)
Q Consensus        66 sLC~~CD~~~H~An   79 (397)
                      ++|-.|-..+.+++
T Consensus       244 pvc~~clee~khs~  257 (699)
T KOG4367|consen  244 PVCYQCLEEGKHSS  257 (699)
T ss_pred             hHHHHHHHhhcccc
Confidence            99999998764433

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=83.97  E-value=0.45  Score=43.39  Aligned_cols=83  Identities=19%  Similarity=0.125  Sum_probs=50.7

Q ss_pred             CCCccCCCCeeEEecCCccccccccccccccccchhhcccccccccccCCCCce--eeecCCCccc----CcccccCccC
Q 015947            4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPAL--VRCAEERVSL----CQNCDWIGHG   77 (397)
Q Consensus         4 ~Cd~C~~a~A~VyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpLCd~C~s~PA~--v~C~~D~asL----C~~CD~~~H~   77 (397)
                      .|+-|....... |..|.+.+|..++.++|..+.+...|.++.++..+...++.  +.+..+...+    +..++...|.
T Consensus         7 ~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (340)
T KOG1601|consen    7 DLDSCRFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATSFSIDLSVPSLDMPGLEGFSLFVSE   85 (340)
T ss_pred             cccccCcccccc-cccccccCCcccccccccccccccccccccccchhhhhhcccccccccccccccccccccccccccc
Confidence            355555555555 99999999999999999988666677788887776522222  2233233333    4445555554


Q ss_pred             CCCCCCCCcc
Q 015947           78 TSTSASSHKR   87 (397)
Q Consensus        78 An~lA~~HqR   87 (397)
                      .++...+|..
T Consensus        86 ~~~~~~~~~~   95 (340)
T KOG1601|consen   86 NNPNSLRHPP   95 (340)
T ss_pred             ccCCCCCCCC
Confidence            4444445544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	98.33
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.86
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	91.87
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	91.0
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	90.9
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	88.05
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	87.63
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	86.23
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	84.0
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	82.56
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	80.89

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=98.33  E-value=2.6e-07  Score=74.98  Aligned_cols=84  Identities=18%  Similarity=0.445  Sum_probs=67.2

Q ss_pred             CCCCCccCC---CCeeEEecCCccccccccccccccccchhhccccc-c---------cccccCCCCceeeecCCCcccC
Q 015947            2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT-L---------LCERCNSQPALVRCAEERVSLC   68 (397)
Q Consensus         2 ~~~Cd~C~~---a~A~VyC~aD~A~LC~~CD~~vHsAN~La~RH~Rv-p---------LCd~C~s~PA~v~C~~D~asLC   68 (397)
                      +..|++|..   .+|+.+|..+.+.||..|...+|..+...++|..+ +         .|+.+...+..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            467999984   68999999999999999999999877766788765 2         3666655668899999999999


Q ss_pred             ccccc-CccCCCCCCCCCcccccc
Q 015947           69 QNCDW-IGHGTSTSASSHKRQTIN   91 (397)
Q Consensus        69 ~~CD~-~~H~An~lA~~HqR~pl~   91 (397)
                      ..|.. ..|.      .|..++|.
T Consensus        83 ~~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             HHHHHHTTTS------SSCBCCCC
T ss_pred             hhcCCCCCcC------CCCeecCC
Confidence            99986 4554      46655553

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.86  E-value=0.021  Score=45.81  Aligned_cols=43  Identities=28%  Similarity=0.571  Sum_probs=36.5

Q ss_pred             ccccccCC---CCceeeecCCCcccCcccccCccCCCCCCCCCccc
Q 015947           46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (397)
Q Consensus        46 pLCd~C~s---~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~   88 (397)
                      ..|++|..   .+|+.+|..|..+||..|....|..+....+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            57999984   57999999999999999998878766666788876

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=91.87  E-value=0.071  Score=37.84  Aligned_cols=44  Identities=23%  Similarity=0.538  Sum_probs=34.8

Q ss_pred             ccccccccccCCCCceeeecCCCcccCcccccCccCCCCCCCCCcccccc
Q 015947           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN   91 (397)
Q Consensus        42 H~RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~pl~   91 (397)
                      ..|...|..+...+-.+||..|...+|..|....|.      .|..+||.
T Consensus         3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~   46 (50)
T 2yvr_A            3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLE   46 (50)
T ss_dssp             CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETT
T ss_pred             CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHH
Confidence            456677888877788999999999999999875553      67766664

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=91.00  E-value=0.086  Score=41.46  Aligned_cols=44  Identities=27%  Similarity=0.559  Sum_probs=36.2

Q ss_pred             cccccccCC---CCceeeecCCCcccCcccccCccCCCCCCCCCccc
Q 015947           45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ   88 (397)
Q Consensus        45 vpLCd~C~s---~PA~v~C~~D~asLC~~CD~~~H~An~lA~~HqR~   88 (397)
                      ...|+.|..   .+|+.+|..|.+++|..|-...|.......+|+.+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            467999975   56899999999999999987768766667788764

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=90.90  E-value=0.11  Score=38.53  Aligned_cols=45  Identities=16%  Similarity=0.333  Sum_probs=34.5

Q ss_pred             cccccccccccCCCCceeeecCCCcccCcccccC-ccCCCCCCCCCcccccc
Q 015947           41 RHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (397)
Q Consensus        41 RH~RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~An~lA~~HqR~pl~   91 (397)
                      +..+..+|..+...+..+||..|...+|..|... .|.      .|..+||.
T Consensus         4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   49 (64)
T 2d8u_A            4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   49 (64)
T ss_dssp             CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred             CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHH
Confidence            4556677888877888999999999999999864 453      46655554

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=88.05  E-value=0.23  Score=34.96  Aligned_cols=41  Identities=15%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             cccccccCCCCceeeecCCCcccCccccc-CccCCCCCCCCCcccccc
Q 015947           45 TLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN   91 (397)
Q Consensus        45 vpLCd~C~s~PA~v~C~~D~asLC~~CD~-~~H~An~lA~~HqR~pl~   91 (397)
                      ..+|......+..+||..|...+|..|.. ..|.      .|..+||.
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence            45677776677889999999999999974 3454      56666654

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=87.63  E-value=0.28  Score=35.14  Aligned_cols=40  Identities=20%  Similarity=0.465  Sum_probs=31.2

Q ss_pred             cccccccCCCCceeeecCCCcccCcccccC-ccCCCCCCCCCcccccc
Q 015947           45 TLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (397)
Q Consensus        45 vpLCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~An~lA~~HqR~pl~   91 (397)
                      ..+|..+. .+-.+||..|...+|..|... .|.      .|..+||.
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   48 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLS   48 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECC
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHH
Confidence            34687776 678899999999999999873 443      67777765

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=86.23  E-value=0.52  Score=32.04  Aligned_cols=30  Identities=17%  Similarity=0.407  Sum_probs=23.7

Q ss_pred             cccccCCCCceeeecCCCcccCcccccC-ccC
Q 015947           47 LCERCNSQPALVRCAEERVSLCQNCDWI-GHG   77 (397)
Q Consensus        47 LCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~   77 (397)
                      +|..++ .+-.+||..|...+|..|... .|.
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~   35 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA   35 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence            566665 567899999999999999873 443

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=84.00  E-value=0.5  Score=36.65  Aligned_cols=44  Identities=20%  Similarity=0.473  Sum_probs=32.3

Q ss_pred             ccccccccccCCCCceeeecCCCcccCccccc-CccCCCCCCCCCcccccc
Q 015947           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN   91 (397)
Q Consensus        42 H~RvpLCd~C~s~PA~v~C~~D~asLC~~CD~-~~H~An~lA~~HqR~pl~   91 (397)
                      ..+..+|..+...+-.+||..|...+|..|.. ..|.      .|..+||.
T Consensus        15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   59 (84)
T 2dja_A           15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN   59 (84)
T ss_dssp             CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred             CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHH
Confidence            34445677776677899999999999999987 3453      56555544

>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*

Probab=82.56  E-value=0.64  Score=28.79  Aligned_cols=18  Identities=33%  Similarity=0.573  Sum_probs=16.4

Q ss_pred             hhhHHHHHHHhHHhhhhc
Q 015947          358 SASRSKAVLRYKEKKKTR  375 (397)
Q Consensus       358 ~~~r~~a~~ry~ekkk~r  375 (397)
                      +.+|...+.||-||+|.|
T Consensus         3 p~aRk~SLqRFleKRk~R   20 (21)
T 3ogl_Q            3 PIARRASLHRFLEKRKDR   20 (26)
T ss_pred             chhHHHHHHHHHHHhhcc
Confidence            478999999999999987

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.89  E-value=0.79  Score=33.84  Aligned_cols=41  Identities=22%  Similarity=0.462  Sum_probs=30.9

Q ss_pred             ccccccccCCCCceeeecCCCcccCcccccC-ccCCCCCCCCCcccccc
Q 015947           44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (397)
Q Consensus        44 RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~An~lA~~HqR~pl~   91 (397)
                      +..+|..+. .+-.+||..|...+|..|... .|.      .|...||.
T Consensus        13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~   54 (59)
T 2yrg_A           13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTS   54 (59)
T ss_dssp             CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECC
T ss_pred             cCccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHH
Confidence            345677776 568899999999999999873 343      67766665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	93.53
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	93.28
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	90.58
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	87.13
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	86.81

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.014  Score=40.35  Aligned_cols=43  Identities=21%  Similarity=0.550  Sum_probs=35.4

Q ss_pred             ccccccccccCCCCceeeecCCCcccCcccccC-ccCCCCCCCCCccccc
Q 015947           42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTI   90 (397)
Q Consensus        42 H~RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~An~lA~~HqR~pl   90 (397)
                      |.|..+|..+...+..+||..|..++|..|... .|.      .|.-.+|
T Consensus         2 ~l~~~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~------~H~~~~l   45 (47)
T d2dq5a1           2 HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR------DHQVAAL   45 (47)
T ss_dssp             CCCCCBCSSCTTSBEEEEETTTTEEEEHHHHHTSSTT------SSCCCCS
T ss_pred             CccCccchhhCCCcceEEcCCCCccCCccCcCcCCcC------CCeEeeC
Confidence            678889999998999999999999999999765 453      5665554

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.017  Score=42.35  Aligned_cols=49  Identities=20%  Similarity=0.547  Sum_probs=38.7

Q ss_pred             chhhcccccccccccCCCCceeeecCCCcccCcccccCc-cCCCCCCCCCcccccc
Q 015947           37 ALSKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTIN   91 (397)
Q Consensus        37 ~La~RH~RvpLCd~C~s~PA~v~C~~D~asLC~~CD~~~-H~An~lA~~HqR~pl~   91 (397)
                      ++...+.|...|..+...+..+||..|...+|..|...+ |.      .|.-.+|.
T Consensus         3 P~~~~~~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk------~H~~~~i~   52 (71)
T d2djaa1           3 PVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLN   52 (71)
T ss_dssp             CCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCC
T ss_pred             CCCccccCCCcCcccCCccceeEcCCCCceeccccccCCCCC------CCcCcCHH
Confidence            344567888889999889999999999999999997654 43      57665555

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=0.061  Score=37.45  Aligned_cols=40  Identities=15%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             ccccccCCCCceeeecCCCcccCcccccC-ccCCCCCCCCCcccccc
Q 015947           46 LLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN   91 (397)
Q Consensus        46 pLCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~An~lA~~HqR~pl~   91 (397)
                      |+|......+..+||..|...+|..|... .|.      .|.-.+|.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~Hk------~H~v~~l~   42 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   42 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTT
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCcC------cCcCcCHH
Confidence            67888888889999999999999999754 453      46655554

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=87.13  E-value=0.19  Score=33.21  Aligned_cols=36  Identities=22%  Similarity=0.405  Sum_probs=25.9

Q ss_pred             ccccCCCCceeeecCCCcccCcccccCc-cCCCCCCCCCccccc
Q 015947           48 CERCNSQPALVRCAEERVSLCQNCDWIG-HGTSTSASSHKRQTI   90 (397)
Q Consensus        48 Cd~C~s~PA~v~C~~D~asLC~~CD~~~-H~An~lA~~HqR~pl   90 (397)
                      |..++ .+-.+||..|...+|..|...+ |.      .|.-+||
T Consensus         3 C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~v~pi   39 (39)
T d1frea_           3 CSEHD-ERLKLYCKDDGTLSCVICRDSLKHA------SHNFLPI   39 (39)
T ss_dssp             CCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT------TCCCCCC
T ss_pred             CcccC-cceeEEcccCCcEeeccCcCCCCcC------CCcEeeC
Confidence            44453 4678999999999999997543 43      5666554

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.14  Score=34.01  Aligned_cols=37  Identities=22%  Similarity=0.514  Sum_probs=27.9

Q ss_pred             cccccCCCCceeeecCCCcccCcccccC-ccCCCCCCCCCccccc
Q 015947           47 LCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTI   90 (397)
Q Consensus        47 LCd~C~s~PA~v~C~~D~asLC~~CD~~-~H~An~lA~~HqR~pl   90 (397)
                      +|..++ .+-.+||..|...+|..|... .|.      .|.-+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCcC------CCcEecC
Confidence            566664 667899999999999999765 343      5766664