Citrus Sinensis ID: 015963
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YP9 | 488 | Sugar transporter ERD6-li | yes | no | 0.929 | 0.756 | 0.803 | 1e-177 | |
| Q9FRL3 | 487 | Sugar transporter ERD6-li | no | no | 0.929 | 0.757 | 0.800 | 1e-176 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.861 | 0.738 | 0.431 | 3e-77 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.881 | 0.726 | 0.414 | 8e-77 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.785 | 0.663 | 0.463 | 7e-76 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.886 | 0.748 | 0.396 | 1e-70 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.914 | 0.731 | 0.394 | 3e-70 | |
| Q94CI7 | 474 | Sugar transporter ERD6-li | no | no | 0.818 | 0.685 | 0.417 | 8e-68 | |
| Q94CI6 | 478 | Sugar transporter ERD6-li | no | no | 0.818 | 0.679 | 0.420 | 9e-68 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.775 | 0.655 | 0.436 | 7e-67 |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 620 bits (1599), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/372 (80%), Positives = 345/372 (92%), Gaps = 3/372 (0%)
Query: 1 MSFRDDNEEAA--NLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALG 58
MSFRDDN E +LR+PFLHTGSWY+MGSRQSS++ SS Q++RD S+SV+ CVL+VALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESS-QVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358
INGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TWL+DKAGRRLLL+ISS GM
Sbjct: 300 INGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTI 359
Query: 359 SFFLVSVAFFLE 370
S +V+VAF+L+
Sbjct: 360 SLVIVAVAFYLK 371
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 618 bits (1594), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/371 (80%), Positives = 342/371 (92%), Gaps = 2/371 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MGSRQSS+M SS Q++RD S+SV+ CVL+VALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRRLLL ISS GM S
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTIS 359
Query: 360 FFLVSVAFFLE 370
+V+ AF+L+
Sbjct: 360 LVIVAAAFYLK 370
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 148/343 (43%), Positives = 221/343 (64%), Gaps = 1/343 (0%)
Query: 29 RQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFS 88
R+ + + A D V V G FG GYSSP QA I +DL LTI+EFS
Sbjct: 9 REPLVDKNMAGSKPDQPWMVYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFS 68
Query: 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148
+FGSL GAM+GAI SG IA+ +GRKG++ +++ ++GWL I F+K L +GRL
Sbjct: 69 LFGSLLTFGAMIGAITSGPIADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLAT 128
Query: 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVL 208
G+G+G SY VP++IAEIAP+ RG+L ++NQ+ + G+ +++++G V WRVLA++G++
Sbjct: 129 GYGMGAFSYVVPIFIAEIAPKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGII 188
Query: 209 PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRT 268
PC GLFFIPESPRWLAK+G +FE++L+ LRG DIS E EI+ + + R
Sbjct: 189 PCAASFLGLFFIPESPRWLAKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLP 248
Query: 269 AIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVV 328
+ +L ++RY ++I GL+V QQ GING+ FY+S+IF AG + + V+
Sbjct: 249 KAKMLDLFQRRYIRSVLIAFGLMVFQQFGGINGICFYTSSIFEQAGF-PTRLGMIIYAVL 307
Query: 329 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEV 371
QVV T +N ++D+AGR+ LLL+S++G+ + +V+F+L+V
Sbjct: 308 QVVITALNAPIVDRAGRKPLLLVSATGLVIGCLIAAVSFYLKV 350
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 227/364 (62%), Gaps = 14/364 (3%)
Query: 8 EEAANLRKPFL-HTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGFTC 66
+ +L KPFL H + + +S +M V+F V G +FG
Sbjct: 16 NKVEDLGKPFLTHEDDEKESENNESYLM-------------VLFSTFVAVCGSFEFGSCV 62
Query: 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126
GYS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG++ +A I
Sbjct: 63 GYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTSACFCI 122
Query: 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186
GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L ++NQL + IG
Sbjct: 123 TGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIG 182
Query: 187 IMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF 246
+++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F +LQ LRG
Sbjct: 183 SSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFRVALQKLRGK 242
Query: 247 DTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306
D DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ GING+ FY+
Sbjct: 243 DADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFVGINGIGFYA 302
Query: 307 SNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366
S F AG +S + T + VQV T + T L+DK+GRR L++IS+ G+ L +
Sbjct: 303 SETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIFLGCILTGTS 362
Query: 367 FFLE 370
F L+
Sbjct: 363 FLLK 366
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 145/313 (46%), Positives = 215/313 (68%), Gaps = 1/313 (0%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMA 357
G+NG+ FY+S+IF +AG+ SS + + VVQ+ T + LMDK+GRR LLLIS++G
Sbjct: 282 GVNGIAFYASSIFESAGV-SSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISATGTC 340
Query: 358 ASFFLVSVAFFLE 370
FLV ++F L+
Sbjct: 341 IGCFLVGLSFSLQ 353
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 225/368 (61%), Gaps = 16/368 (4%)
Query: 4 RDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFG 63
+DD E+ + +P L + + + + + S V ++ G +FG
Sbjct: 5 KDDMEKRNDKSEPLL--------------LPENGSDVSEEASWMVYLSTIIAVCGSYEFG 50
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG++ +++V
Sbjct: 51 TCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSV 110
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 183
+ IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L ++NQL +
Sbjct: 111 ISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFI 170
Query: 184 TIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE +LQ L
Sbjct: 171 VIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKL 230
Query: 244 RGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVL 303
RG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ GINGV+
Sbjct: 231 RGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFVGINGVI 290
Query: 304 FYSSNIFANAGISSSNVATFGLGVVQVVATGVN-TWLMDKAGRRLLLLISSSGMAASFFL 362
FY+ IF +AG +S + + + QVV T + T L+D+ GRR LL+ S+ GM L
Sbjct: 291 FYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGATLLIDRLGRRPLLMASAVGMLIGCLL 349
Query: 363 VSVAFFLE 370
+ +F L+
Sbjct: 350 IGNSFLLK 357
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/375 (39%), Positives = 224/375 (59%), Gaps = 12/375 (3%)
Query: 4 RDDNEEAANLRK-------PFLHTGSWYKMGSRQSSIMSSSAQMLRDG----SVSVVFCV 52
R + E LRK F + ++ + G + S DG + SV
Sbjct: 3 RQKSMEKGLLRKSLSIRERKFPNEDAFLESGLSRKSPREVKKPQNDDGECRVTASVFLST 62
Query: 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI 112
V G G G+SS QA I DL L+++E+S+FGS+ +G ++GA+ SG++A+ +
Sbjct: 63 FVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVL 122
Query: 113 GRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR 172
GRK +++ I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIAEIAP+++R
Sbjct: 123 GRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVR 182
Query: 173 GSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGM 232
GS NQL GI L +++G F+ WR+L V+G++PC + LFFIPESPRWLAK+G
Sbjct: 183 GSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGR 242
Query: 233 TEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292
++ SSLQ LRG D DIS E N I+ ++ + + +EL ++RY +PL+IG+GL+
Sbjct: 243 DKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMF 302
Query: 293 LQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352
LQQL G +GV +Y+S++F G S+ + T + + V + T L+DK GRR LL+ S
Sbjct: 303 LQQLCGSSGVTYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRRTLLMAS 361
Query: 353 SSGMAASFFLVSVAF 367
S M S L+SV++
Sbjct: 362 CSAMGLSALLLSVSY 376
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 258 bits (658), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 203/326 (62%), Gaps = 1/326 (0%)
Query: 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIA 104
+ V+ V G FG GY+S + ++ DL L+I++FS FGS A +GA +GA+
Sbjct: 28 TACVILSTFVAVCGSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALF 87
Query: 105 SGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIA 164
G +A IGR+G++ ++ I GWL I+F+K+ L GR++ G G G+ SY VPVYIA
Sbjct: 88 CGNLAMVIGRRGTMWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIA 147
Query: 165 EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESP 224
EI P+++RG+ NQL G+ + Y G F+ WR LA+LG LPC + + GLFF+PESP
Sbjct: 148 EITPKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESP 207
Query: 225 RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284
RWLAK+G ++ E+SL LRG D DIS E +EI+ + F++L +++Y + L
Sbjct: 208 RWLAKVGSDKELENSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTL 267
Query: 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAG 344
++GIGL+++QQ SG V+ Y+S IF AG S + + T LG+ + + L+DK G
Sbjct: 268 VVGIGLMLIQQFSGSAAVISYASTIFRKAGFSVA-IGTTMLGIFVIPKAMIGLILVDKWG 326
Query: 345 RRLLLLISSSGMAASFFLVSVAFFLE 370
RR LL+ S+ GM+ + L+ VAF L+
Sbjct: 327 RRPLLMTSAFGMSMTCMLLGVAFTLQ 352
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 209/326 (64%), Gaps = 1/326 (0%)
Query: 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIA 104
+ V+ + G FG + GY+S + I+ DL L+I++FS F SL+ +GA +GA+
Sbjct: 32 TACVILSTFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALF 91
Query: 105 SGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIA 164
SG++A +GR+ ++ ++ + IIGW I+F+KD +L GR+ G G+G+ISY VPVYIA
Sbjct: 92 SGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIA 151
Query: 165 EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESP 224
EI+P+++RG+ NQL G+ + Y G F+NWR+LA+LG LPC + + GLFF+PESP
Sbjct: 152 EISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESP 211
Query: 225 RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284
RWLAK+G ++ E+SL LRG + DIS E ++I+ + F +L +++Y + L
Sbjct: 212 RWLAKVGSDKELENSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRKYRYTL 271
Query: 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAG 344
++GIGL+++QQ SG + VL Y+S I AG S + +T LG+ + + L+DK G
Sbjct: 272 VVGIGLMLIQQFSGSSAVLSYASTILRKAGFSVTIGSTL-LGLFMIPKAMIGVILVDKWG 330
Query: 345 RRLLLLISSSGMAASFFLVSVAFFLE 370
RR LLL S SGM + L+ VAF L+
Sbjct: 331 RRPLLLTSVSGMCITSMLIGVAFTLQ 356
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 135/309 (43%), Positives = 202/309 (65%), Gaps = 1/309 (0%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
V+F V G FG GYSS Q II+DL L+++++S+FGS+ G M+GAI SG+
Sbjct: 32 VLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGK 91
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
+A+ +GRKG++ A + I GW+ ++ +KDS +L +GRL GF VG++SY +PVYIAEI
Sbjct: 92 VADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEIT 151
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+++RG+ NQL + G+ L Y++G FV+WR LA++G++PC L + LFFIPESPR L
Sbjct: 152 PKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESPRLL 211
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
K G ++ +SLQ LRG D DIS E N IK ++ R +L ++RY ++IG
Sbjct: 212 GKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSVVIG 271
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRL 347
+GL++LQQLSG +G+++Y ++F G SS + + L V+ + + L++K GRR
Sbjct: 272 VGLMLLQQLSGSSGLMYYVGSVFDKGGFPSS-IGSMILAVIMIPKALLGLILVEKMGRRP 330
Query: 348 LLLISSSGM 356
LLL S+ GM
Sbjct: 331 LLLASTGGM 339
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | ||||||
| 147792214 | 486 | hypothetical protein VITISV_009034 [Viti | 0.929 | 0.759 | 0.832 | 0.0 | |
| 225430744 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 0.929 | 0.759 | 0.832 | 0.0 | |
| 356503024 | 487 | PREDICTED: sugar transporter ERD6-like 6 | 0.931 | 0.759 | 0.813 | 1e-178 | |
| 224065573 | 487 | predicted protein [Populus trichocarpa] | 0.929 | 0.757 | 0.816 | 1e-178 | |
| 356559394 | 484 | PREDICTED: sugar transporter ERD6-like 6 | 0.921 | 0.756 | 0.816 | 1e-177 | |
| 255538660 | 487 | sugar transporter, putative [Ricinus com | 0.929 | 0.757 | 0.816 | 1e-177 | |
| 449460263 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 0.929 | 0.759 | 0.808 | 1e-176 | |
| 357518263 | 486 | Sugar transporter ERD6-like protein [Med | 0.929 | 0.759 | 0.8 | 1e-175 | |
| 15223557 | 488 | sugar transporter ERD6-like 4 [Arabidops | 0.929 | 0.756 | 0.803 | 1e-175 | |
| 15222158 | 487 | sugar transporter ERD6-like 6 [Arabidops | 0.929 | 0.757 | 0.800 | 1e-174 |
| >gi|147792214|emb|CAN72983.1| hypothetical protein VITISV_009034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/370 (83%), Positives = 350/370 (94%), Gaps = 1/370 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TWL+DKAGRRLLL++SSSGM S
Sbjct: 300 GVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSL 359
Query: 361 FLVSVAFFLE 370
LVSVAF+L+
Sbjct: 360 LLVSVAFYLK 369
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430744|ref|XP_002266704.1| PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera] gi|297735148|emb|CBI17510.3| unnamed protein product [Vitis vinifera] gi|310877886|gb|ADP37174.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/370 (83%), Positives = 350/370 (94%), Gaps = 1/370 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYSSNIF AGISSS++AT GLGV+QV+ATGV TWL+DKAGRRLLL++SSSGM S
Sbjct: 300 GVLFYSSNIFEAAGISSSDIATVGLGVIQVIATGVTTWLVDKAGRRLLLIVSSSGMTLSL 359
Query: 361 FLVSVAFFLE 370
LVSVAF+L+
Sbjct: 360 LLVSVAFYLK 369
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503024|ref|XP_003520312.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/370 (81%), Positives = 343/370 (92%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS ++RDG+VSV+FCVL+VALGPI
Sbjct: 1 MSFREESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTHVIRDGAVSVLFCVLIVALGPI 60
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
AA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQ++RG LGSVNQ
Sbjct: 121 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQHLRGGLGSVNQ 180
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LS+TIGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGMT++FE+SL
Sbjct: 181 LSITIGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMTDEFETSL 240
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +R IRFA+LKRKRYWFPLM+GIGLLVLQQLSGIN
Sbjct: 241 QVLRGFDTDISVEVYEIKRSVASTGKRATIRFADLKRKRYWFPLMVGIGLLVLQQLSGIN 300
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYS+ IFANAGISSS AT GLG VQV+ATG++TWL+DK+GRRLLL+ISSS M S
Sbjct: 301 GVLFYSTTIFANAGISSSEAATVGLGAVQVIATGISTWLVDKSGRRLLLMISSSVMTVSL 360
Query: 361 FLVSVAFFLE 370
+VS+AF+LE
Sbjct: 361 LIVSIAFYLE 370
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065573|ref|XP_002301864.1| predicted protein [Populus trichocarpa] gi|222843590|gb|EEE81137.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/371 (81%), Positives = 345/371 (92%), Gaps = 2/371 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+ ++RKPFLHTGSWY+M SRQSS+M SS Q +RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDGRGDIRKPFLHTGSWYRMSSRQSSMMGSS-QAIRDNSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFT GYSSPTQA I++DL LT+SEFS+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTSGYSSPTQASIMADLGLTVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFESS
Sbjct: 180 QLSVTIGIMLAYLLGLFVEWRILAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFESS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EV+EIKR++AS+SRRT IRFAELKRKRYWFPL +GIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISVEVHEIKRAIASTSRRTTIRFAELKRKRYWFPLTVGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSSNIFA AGI SSNVAT G+G +QV+ATGV TWL+D+ GRRLLL++S+SGM S
Sbjct: 300 NGVLFYSSNIFATAGIKSSNVATVGVGAIQVIATGVTTWLVDRTGRRLLLIVSTSGMTIS 359
Query: 360 FFLVSVAFFLE 370
+V+V+FF++
Sbjct: 360 LLIVAVSFFVK 370
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559394|ref|XP_003547984.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/366 (81%), Positives = 341/366 (93%)
Query: 5 DDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGF 64
+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS Q++RDG+VSV+FCVL+VALGPIQFGF
Sbjct: 2 EESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGF 61
Query: 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124
TCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMIAA+P
Sbjct: 62 TCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIP 121
Query: 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184
NIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQN+RG LGSVNQLSVT
Sbjct: 122 NIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNLRGGLGSVNQLSVT 181
Query: 185 IGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLR 244
IGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM ++FE+SLQVLR
Sbjct: 182 IGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMIDEFETSLQVLR 241
Query: 245 GFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 304
GFDTDIS+EV+EIKRSVAS+ +R AIRFA+LKRKRYWFPLM+GIGLLVLQQLSGING+LF
Sbjct: 242 GFDTDISVEVHEIKRSVASTGKRAAIRFADLKRKRYWFPLMVGIGLLVLQQLSGINGILF 301
Query: 305 YSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364
YS+ IFANAGISSS AT GLG VQV+ATG++TWL+DK+GRRLLL+ISSS M S +VS
Sbjct: 302 YSTTIFANAGISSSEAATVGLGAVQVIATGISTWLVDKSGRRLLLIISSSVMTVSLLIVS 361
Query: 365 VAFFLE 370
+AF+LE
Sbjct: 362 IAFYLE 367
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538660|ref|XP_002510395.1| sugar transporter, putative [Ricinus communis] gi|223551096|gb|EEF52582.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust.
Identities = 303/371 (81%), Positives = 344/371 (92%), Gaps = 2/371 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+A +LRKPFLHTGSWY+MGSRQSS+M SS Q++RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDARGDLRKPFLHTGSWYRMGSRQSSMMGSS-QVIRDSSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQ I DLKL++SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQTAITDDLKLSVSEYSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNI+GWL ISF+ D+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNILGWLAISFAHDASFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMTEDFE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVQWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTEDFEAS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EVNEIKRSVAS+SRR+ IRF ELKR+RYW PLMIGIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISLEVNEIKRSVASTSRRSTIRFVELKRRRYWLPLMIGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG+ +SNVAT GLG +QV+ATGV T ++DKAGRRLLL+ISSS MA S
Sbjct: 300 NGVLFYSSTIFESAGVKNSNVATCGLGAIQVIATGVTTSIVDKAGRRLLLIISSSAMAIS 359
Query: 360 FFLVSVAFFLE 370
LV+V+FF++
Sbjct: 360 LLLVAVSFFVQ 370
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460263|ref|XP_004147865.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] gi|449476810|ref|XP_004154840.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/370 (80%), Positives = 342/370 (92%), Gaps = 1/370 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFRDDNEE +LRKPFLHTGSWY+MGSRQSS+M SS Q +RD S+SV+ CVL+VALGPI
Sbjct: 1 MSFRDDNEEGRDLRKPFLHTGSWYRMGSRQSSMMGSS-QGIRDSSISVLACVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+ I+ DL+LT+ E+S+FGSL+NVGAMVGAI+SGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSSIMKDLRLTVPEYSVFGSLSNVGAMVGAISSGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
AA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG LGSVNQ
Sbjct: 120 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVTIGI+LAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTE+FE+SL
Sbjct: 180 LSVTIGILLAYLLGLFVPWRLLAVLGILPCTVLIPGLFFIPESPRWLAKMGMTEEFETSL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFD DISIEVNEIKRSVA++++RT IRFAELKR+RYWFPLMIGIGLL+LQQL+GIN
Sbjct: 240 QVLRGFDADISIEVNEIKRSVATTTKRTTIRFAELKRRRYWFPLMIGIGLLMLQQLTGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
VLFYSS IFA AG+ SSNVAT GLG VQVVAT V TWL+D+AGRR+LL++S++GM S
Sbjct: 300 AVLFYSSTIFAAAGVESSNVATCGLGAVQVVATAVTTWLVDRAGRRILLIVSTAGMTFSL 359
Query: 361 FLVSVAFFLE 370
+VSV FFL+
Sbjct: 360 LIVSVVFFLK 369
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518263|ref|XP_003629420.1| Sugar transporter ERD6-like protein [Medicago truncatula] gi|355523442|gb|AET03896.1| Sugar transporter ERD6-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/370 (80%), Positives = 344/370 (92%), Gaps = 1/370 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ + +L+KPFLHTGSWYKMGSRQSS+M S+ ++RD SVSV+FCVL+ ALGPI
Sbjct: 1 MSFREESGDGRDLQKPFLHTGSWYKMGSRQSSVMGSTTSVMRD-SVSVLFCVLIAALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ II+DLKL++SEFS+FGSL+NVGAMVGAIASGQIAEY+GRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQQAIINDLKLSVSEFSLFGSLSNVGAMVGAIASGQIAEYVGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISY VPVYIAEIAP+NMRGSLGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAKDSSFLFMGRLLEGFGVGIISYVVPVYIAEIAPENMRGSLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVTIGIMLAYLLGLF NWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM E+FE+SL
Sbjct: 180 LSVTIGIMLAYLLGLFANWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMMEEFETSL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV+EIK++VAS+ +R IRFA+L+RKRYWFPL +GIGLLVLQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVHEIKKAVASNGKRATIRFADLQRKRYWFPLSVGIGLLVLQQLSGIN 299
Query: 301 GVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360
GVLFYS++IFANAGISSSN AT GLG +QV+ATGV TWL+DK+GRR+LL+ISSS M AS
Sbjct: 300 GVLFYSTSIFANAGISSSNAATVGLGAIQVIATGVATWLVDKSGRRVLLIISSSLMTASL 359
Query: 361 FLVSVAFFLE 370
+VS+AF+LE
Sbjct: 360 LVVSIAFYLE 369
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223557|ref|NP_173377.1| sugar transporter ERD6-like 4 [Arabidopsis thaliana] gi|75331761|sp|Q93YP9.1|ERDL4_ARATH RecName: Full=Sugar transporter ERD6-like 4 gi|16648957|gb|AAL24330.1| similar to integral membrane protein [Arabidopsis thaliana] gi|20259852|gb|AAM13273.1| similar to integral membrane protein [Arabidopsis thaliana] gi|332191732|gb|AEE29853.1| sugar transporter ERD6-like 4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 299/372 (80%), Positives = 345/372 (92%), Gaps = 3/372 (0%)
Query: 1 MSFRDDNEEAA--NLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALG 58
MSFRDDN E +LR+PFLHTGSWY+MGSRQSS++ SS Q++RD S+SV+ CVL+VALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESS-QVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358
INGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TWL+DKAGRRLLL+ISS GM
Sbjct: 300 INGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTI 359
Query: 359 SFFLVSVAFFLE 370
S +V+VAF+L+
Sbjct: 360 SLVIVAVAFYLK 371
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222158|ref|NP_177658.1| sugar transporter ERD6-like 6 [Arabidopsis thaliana] gi|75334257|sp|Q9FRL3.1|ERDL6_ARATH RecName: Full=Sugar transporter ERD6-like 6 gi|10092276|gb|AAG12689.1|AC025814_13 integral membrane protein, putative; 33518-36712 [Arabidopsis thaliana] gi|15724240|gb|AAL06513.1|AF412060_1 At1g75220/F22H5_6 [Arabidopsis thaliana] gi|21700861|gb|AAM70554.1| At1g75220/F22H5_6 [Arabidopsis thaliana] gi|332197568|gb|AEE35689.1| sugar transporter ERD6-like 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/371 (80%), Positives = 342/371 (92%), Gaps = 2/371 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MGSRQSS+M SS Q++RD S+SV+ CVL+VALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRRLLL ISS GM S
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTIS 359
Query: 360 FFLVSVAFFLE 370
+V+ AF+L+
Sbjct: 360 LVIVAAAFYLK 370
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | ||||||
| TAIR|locus:2025132 | 487 | ERDL6 "ERD6-like 6" [Arabidops | 0.894 | 0.728 | 0.761 | 9.3e-146 | |
| TAIR|locus:2016407 | 488 | AT1G19450 [Arabidopsis thalian | 0.894 | 0.727 | 0.770 | 1.2e-145 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.725 | 0.612 | 0.463 | 4.9e-69 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.750 | 0.643 | 0.451 | 6.3e-69 | |
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.727 | 0.599 | 0.460 | 1.7e-68 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.750 | 0.634 | 0.443 | 8.5e-65 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.712 | 0.570 | 0.440 | 8.8e-63 | |
| TAIR|locus:2146350 | 474 | SFP1 [Arabidopsis thaliana (ta | 0.750 | 0.628 | 0.421 | 2.1e-61 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.750 | 0.623 | 0.421 | 2.1e-61 | |
| TAIR|locus:505006329 | 467 | AT3G05165 [Arabidopsis thalian | 0.738 | 0.627 | 0.432 | 7.1e-61 |
| TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
Identities = 272/357 (76%), Positives = 310/357 (86%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MG +Q++RD S ALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGS-SQVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGM 356
NGVLFYSS IF +AG++SSN ATFG+G +QVVAT ++TWL+DKAGRR GM
Sbjct: 300 NGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGM 356
|
|
| TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
Identities = 276/358 (77%), Positives = 312/358 (87%)
Query: 1 MSFRDDN-EEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALG 58
MSFRDDN EE N LR+PFLHTGSWY+MG +Q++RD S ALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLES-SQVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGM 356
INGVLFYSS IF +AG++SSNVATFG+GVVQVVATG+ TWL+DKAGRR GM
Sbjct: 300 INGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGM 357
|
|
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 134/289 (46%), Positives = 199/289 (68%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRR 346
G+NG+ FY+S+IF +AG+SS + + VVQ+ T + LMDK+GRR
Sbjct: 282 GVNGIAFYASSIFESAGVSSK-IGMIAMVVVQIPMTTLGVLLMDKSGRR 329
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 135/299 (45%), Positives = 197/299 (65%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP QA I +DL LTI+EFS+FGSL GAM+GAI SG IA+ +GRKG+
Sbjct: 38 GSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGA 97
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++ ++GWL I F+K L +GRL G+G+G SY VP++IAEIAP+ RG+L +
Sbjct: 98 MRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTT 157
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQ+ + G+ +++++G V WRVLA++G++PC GLFFIPESPRWLAK+G +FE
Sbjct: 158 LNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKVGRDTEFE 217
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
++L+ LRG DIS E EI+ + + R + +L ++RY ++I GL+V QQ
Sbjct: 218 AALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIAFGLMVFQQFG 277
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGM 356
GING+ FY+S+IF AG + + V+QVV T +N ++D+AGR+ G+
Sbjct: 278 GINGICFYTSSIFEQAGFPT-RLGMIIYAVLQVVITALNAPIVDRAGRKPLLLVSATGL 335
|
|
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 133/289 (46%), Positives = 196/289 (67%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG+
Sbjct: 54 GSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGA 113
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +A I GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L +
Sbjct: 114 MRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTT 173
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG +++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F
Sbjct: 174 LNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFR 233
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG D DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ
Sbjct: 234 VALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFV 293
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRR 346
GING+ FY+S F AG +S + T + VQV T + T L+DK+GRR
Sbjct: 294 GINGIGFYASETFVKAGFTSGKLGTIAIACVQVPITVLGTILIDKSGRR 342
|
|
| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 133/300 (44%), Positives = 196/300 (65%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG+
Sbjct: 45 GSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGA 104
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++V + IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L +
Sbjct: 105 MRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALAT 164
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE
Sbjct: 165 LNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFE 224
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ
Sbjct: 225 IALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFV 284
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVN-TWLMDKAGRRXXXXXXXXGM 356
GINGV+FY+ IF +AG +S + + + QVV T + T L+D+ GRR GM
Sbjct: 285 GINGVIFYAQQIFVSAG-ASPTLGSILYSIEQVVLTALGATLLIDRLGRRPLLMASAVGM 343
|
|
| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 125/284 (44%), Positives = 190/284 (66%)
Query: 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA 122
G G+SS QA I DL L+++E+S+FGS+ +G ++GA+ SG++A+ +GRK +++
Sbjct: 73 GCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCE 132
Query: 123 VPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS 182
I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIAEIAP+++RGS NQL
Sbjct: 133 FFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLM 192
Query: 183 VTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQV 242
GI L +++G F+ WR+L V+G++PC + LFFIPESPRWLAK+G ++ SSLQ
Sbjct: 193 QNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQR 252
Query: 243 LRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGV 302
LRG D DIS E N I+ ++ + + +EL ++RY +PL+IG+GL+ LQQL G +GV
Sbjct: 253 LRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGV 312
Query: 303 LFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRR 346
+Y+S++F G S+ + T + + V + T L+DK GRR
Sbjct: 313 TYYASSLFNKGGFPSA-IGTSVIATIMVPKAMLATVLVDKMGRR 355
|
|
| TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 126/299 (42%), Positives = 185/299 (61%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GY+S + ++ DL L+I++FS FGS A +GA +GA+ G +A IGR+G+
Sbjct: 41 GSFSFGVATGYTSGAETGVMKDLDLSIAQFSAFGSFATLGAAIGALFCGNLAMVIGRRGT 100
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ ++ I GWL I+F+K+ L GR++ G G G+ SY VPVYIAEI P+++RG+
Sbjct: 101 MWVSDFLCITGWLSIAFAKEVVLLNFGRIISGIGFGLTSYVVPVYIAEITPKHVRGTFTF 160
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
NQL G+ + Y G F+ WR LA+LG LPC + + GLFF+PESPRWLAK+G ++ E
Sbjct: 161 SNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELE 220
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+SL LRG D DIS E +EI+ + F++L +++Y + L++GIGL+++QQ S
Sbjct: 221 NSLFRLRGRDADISREASEIQVMTKMVENDSKSSFSDLFQRKYRYTLVVGIGLMLIQQFS 280
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGM 356
G V+ Y+S IF AG S + + T LG+ + + L+DK GRR GM
Sbjct: 281 GSAAVISYASTIFRKAGFSVA-IGTTMLGIFVIPKAMIGLILVDKWGRRPLLMTSAFGM 338
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 126/299 (42%), Positives = 192/299 (64%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG + GY+S + I+ DL L+I++FS F SL+ +GA +GA+ SG++A +GR+ +
Sbjct: 45 GSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKT 104
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ ++ + IIGW I+F+KD +L GR+ G G+G+ISY VPVYIAEI+P+++RG+
Sbjct: 105 MWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTF 164
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
NQL G+ + Y G F+NWR+LA+LG LPC + + GLFF+PESPRWLAK+G ++ E
Sbjct: 165 TNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELE 224
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+SL LRG + DIS E ++I+ + F +L +++Y + L++GIGL+++QQ S
Sbjct: 225 NSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFS 284
Query: 298 GINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGM 356
G + VL Y+S I AG S + +T LG+ + + L+DK GRR GM
Sbjct: 285 GSSAVLSYASTILRKAGFSVTIGSTL-LGLFMIPKAMIGVILVDKWGRRPLLLTSVSGM 342
|
|
| TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 128/296 (43%), Positives = 188/296 (63%)
Query: 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121
+G GY+S + I+ +L L++++FS FGS NVG VGA+ SGQ+A +GR+ +L
Sbjct: 44 YGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRTLWAC 103
Query: 122 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181
+ GWL I+F+K+ +L +GR+ G GVG+ISY VPVYIAEI P+++RG+ + NQL
Sbjct: 104 DFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQL 163
Query: 182 SVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
G+ L Y G +NWRV+AV+G +PC L G+FFIPESPRWLAK+ ++++ ESSL
Sbjct: 164 LQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIPESPRWLAKIRLSKEVESSLH 223
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301
LRG DTD+S E EI+ + F+++ +K+Y L++GIGL+++QQLSG +G
Sbjct: 224 RLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKYRRTLVVGIGLMLIQQLSGASG 283
Query: 302 VLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXXGM 356
+ +YS+ IF AG S FG+ V+ G+ L+D+ GRR GM
Sbjct: 284 ITYYSNAIFRKAGFSERLGSMIFGVFVIPKALVGLI--LVDRWGRRPLLLASAVGM 337
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93YP9 | ERDL4_ARATH | No assigned EC number | 0.8037 | 0.9294 | 0.7561 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 397 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-76 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 5e-58 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 5e-37 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-19 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-15 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-14 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 5e-13 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 5e-09 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 9e-08 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 1e-07 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 3e-06 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 5e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-05 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 3e-04 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 4e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 0.001 | |
| COG2270 | 438 | COG2270, COG2270, Permeases of the major facilitat | 0.002 | |
| TIGR00792 | 437 | TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron | 0.003 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.004 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 3e-76
Identities = 129/360 (35%), Positives = 194/360 (53%), Gaps = 24/360 (6%)
Query: 51 CVLVVALGPIQFGFTCGYSSPTQAEI-----------ISDLKLTISEFSIFGSLANVGAM 99
LV ALG FG+ G I I + + S+ +VG +
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--LFMGRLLEGFGVGVISY 157
+G++ +G++ + GRK SL+I V +IG L+ F+K SF L +GR++ G GVG IS
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------WRVLAVLGVLPC 210
VP+YI+EIAP+ +RG+LGS+ QL +T GI++A ++GL +N WR+ L +P
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270
LL+ GL F+PESPRWL G E+ + L LRG D+ E+ E K S+ S
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKA 239
Query: 271 RFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQ 329
+ EL R + L++G+ L + QQL+GIN + +YS IF G+S S + T +GVV
Sbjct: 240 SWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVN 299
Query: 330 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEVGHANRVLCQKILAFIAYW 389
V T + +L+D+ GRR LLL+ ++GMA F ++ VA + + FI +
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIV--AIVFILLF 357
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 5e-58
Identities = 117/374 (31%), Positives = 189/374 (50%), Gaps = 25/374 (6%)
Query: 41 LRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGS 92
L V L+ A+G + FG+ G A + K T S + + S
Sbjct: 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVS 78
Query: 93 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF---LFMGRLLEG 149
+ VG +GA+ +G +++ GRK SL+I A+ +IG +++ + + L +GR+L G
Sbjct: 79 IFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138
Query: 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------VNWRVL 202
GVG+ S VP+Y++EIAP+ +RG+L S+ QL++T GI++AY G + WR+
Sbjct: 139 IGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198
Query: 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA 262
L ++P LL GLFF+PESPRWL G E+ SL LRG + ++E++
Sbjct: 199 LGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258
Query: 263 SSSRRTAIRFAELKRKRYWF-----PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS 317
S L +G+ L QQ +GIN +++YS IF NAG+S+
Sbjct: 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST 318
Query: 318 SN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEVGHAN 375
+ + + +G V T V +L+D+ GRR LLLI ++GMA F++ + V ++
Sbjct: 319 DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378
Query: 376 RVLCQKILAFIAYW 389
+ + FI +
Sbjct: 379 KSSGNVAIVFILLF 392
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 5e-37
Identities = 101/355 (28%), Positives = 156/355 (43%), Gaps = 40/355 (11%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQ--------AEIISDLKLTISEFSIFGSLANVGAM 99
+ LV LG + FG+ S T A S + A +G +
Sbjct: 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCI 69
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIG--------WLIISFSKDSSFLFMG----RLL 147
+G G + GR+ SL IAAV I + S D++ R++
Sbjct: 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129
Query: 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------- 197
G GVG+ S P+YIAEIAP ++RG L S NQ ++ G ++ Y + F+
Sbjct: 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN 189
Query: 198 --NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255
WR + +P L + L+F+PE+PR+L G E E L+ + G +T + +
Sbjct: 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-NTLATQALQ 248
Query: 256 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGI 315
EIK S+ + ++IG+ L V QQ GIN VL+Y+ IF G
Sbjct: 249 EIKHSLDHGRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA 303
Query: 316 SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFF 368
S+ + T +GV+ + T + +DK GR+ L +I + GMA F + AF+
Sbjct: 304 STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 358
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 77/288 (26%), Positives = 129/288 (44%), Gaps = 24/288 (8%)
Query: 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148
+ S VG ++G+ G +++ GRK L+++ + + ++ +FS + + + RLL
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGV 207
G G+G I V E P+ R +G++ Q+ ++G++L L+ F+ +WR L +
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVS 250
Query: 208 LPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD-TDISIEVNEIKRSVASSSR 266
LP L +F+PESPRWL G E+ LQ + + + EV + SS
Sbjct: 251 LPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSS 310
Query: 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS-----SNIFANAGISSSNVA 321
+ F +L R P + L L L +Y N+ N + ++
Sbjct: 311 KKQYSFLDLFRT----PNLRKT-TLCLMMLWFTTAFSYYGLVLDLGNLGGNIYL---DLF 362
Query: 322 TFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFL 369
GL V++ A + L+D+ GRR MAAS L VA L
Sbjct: 363 ISGL--VELPAKLITLLLIDRLGRRY-------TMAASLLLAGVALLL 401
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 2e-15
Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
F G+ P+ AE DL + S + G + +G MVGA G +A+ +GRK L+I
Sbjct: 184 FVVGFVLPS-AE--KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS--------- 174
N SF + F RLL GFG+G V Y AE Q RG
Sbjct: 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300
Query: 175 -LGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRW 226
+G + ++ I+ Y F +WRV ++ PC I L F+PESPR+
Sbjct: 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
Query: 227 LAKMG 231
+ G
Sbjct: 361 FLENG 365
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 4/174 (2%)
Query: 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY 111
+L++ LG G G SP + DL L+ S+ + S ++G +G++ +G +++
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 112 IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 171
GR+ L++ + +G L+++F+ L +GR L G G G + IAE P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 172 RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIP 221
RG + +G +L LLG + WR L ++ + LL L F+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 5e-13
Identities = 68/313 (21%), Positives = 125/313 (39%), Gaps = 24/313 (7%)
Query: 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126
G+++P I ++ L + S +G GA+ G +A+ IGR+ L+ + +
Sbjct: 37 GFAAPA---ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFS 93
Query: 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186
+ L+ + + + + L + R L G G+G + + ++E AP+ RG+ + IG
Sbjct: 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153
Query: 187 IMLAYLLGLFV----NWRVL-AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
+ L ++ WR L V G+ P LL+ + F+PES +L
Sbjct: 154 AAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-------PET 206
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIR---FAELKRKRYWFPLMIGIGLLVLQQLSG 298
V R + E + ++ + F L + + + + + LL L G
Sbjct: 207 VRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR-ITVLLWLLYFMLLVG 265
Query: 299 INGVLFYSSNIFANAGISSSNVATFGLGVVQVVATG--VNTWLMDKAGRRLLLLISSSGM 356
+ + + + G S S AT G G + WL D+ G R+ L+ +
Sbjct: 266 VYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL---L 322
Query: 357 AASFFLVSVAFFL 369
+ F V V L
Sbjct: 323 LGAVFAVLVGSTL 335
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 70/301 (23%), Positives = 125/301 (41%), Gaps = 53/301 (17%)
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII----SFSKDSSF----LFMGRLLEGFG 151
+GAI G + IGRK +L+I + IG L+I S++ + L + RL++GF
Sbjct: 50 LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
Query: 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCT 211
+G +Y+AE AP RG GS Q+ +G++LA L L +++ +L +L
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY-LLGDDALLEWG 168
Query: 212 LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR 271
IP L S++ VL G ++E + ++
Sbjct: 169 WRIPFLV-------------------SAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGP 209
Query: 272 FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA------NAGISSSNV--ATF 323
AE K + P ++G+GL++ FY + G+S+++
Sbjct: 210 IAETLTK-HRKPFLLGLGLVIATT------TTFYLITTYLPTYLTQTLGLSANSALLVLM 262
Query: 324 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV----------SVAFFLEVGH 373
++ + ++ L D+ GRR +L+I + A + ++ FFL +G
Sbjct: 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGM 322
Query: 374 A 374
A
Sbjct: 323 A 323
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-08
Identities = 52/309 (16%), Positives = 107/309 (34%), Gaps = 36/309 (11%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
+ DL ++ +E + + ++G + +G++++ GR+ L+I + +G L++ F+
Sbjct: 23 LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195
L + R+L+G G G + IA+ P RG + +G L LLG
Sbjct: 83 SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142
Query: 196 FV----NWR-VLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI 250
+ WR +L +L + +P P
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLPRPPP------------------------- 177
Query: 251 SIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF 310
E KR + + A R ++ LL + L +
Sbjct: 178 -----ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL 232
Query: 311 ANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370
+ + + + G++ + + L D+ GRR LL++ + + +++ E
Sbjct: 233 GLSALLAGLLLGLA-GLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE 291
Query: 371 VGHANRVLC 379
V
Sbjct: 292 SSLWLLVAL 300
|
Length = 346 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 47/190 (24%)
Query: 62 FGFTCGYSS----PTQAEIISDLKLTISEFSIFGSLANVGAM---VGAIASGQIAEYIGR 114
FGF + P E S L LT F++FG G + +GAI G + +GR
Sbjct: 34 FGFYATAIAKTFFPAGNEFAS-LMLT---FAVFG----AGFLMRPLGAIVLGAYIDRVGR 85
Query: 115 K------------GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162
+ G+L+IA VP G+ I + L GRLL+GF GV V VY
Sbjct: 86 RKGLIVTLSIMASGTLLIAFVP---GYATIGLAAPLLVLL-GRLLQGFSAGVELGGVSVY 141
Query: 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN------------WRVLAVLGVLPC 210
+AEIA +G S S + ++ A LLG +N WR+ ++G C
Sbjct: 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG---C 198
Query: 211 TLLIPGLFFI 220
L++P +F I
Sbjct: 199 -LIVPFIFLI 207
|
Length = 434 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138
+ L +++ S +G + GA+ G++A+ IGRK L+++ + G ++ ++
Sbjct: 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA--LFGLFSLATAQAW 101
Query: 139 SF--LFMGRLLEGFGVGVISYTVPVYIA---EIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F L + RLL G G+G +P IA E +RG+ S+ V G LA ++
Sbjct: 102 DFPSLLVARLLTGVGLGG---ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158
Query: 194 GLF----VNWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRG 245
G+ WR + +G + LL+P L ++PES + G + L+ L G
Sbjct: 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFG 215
|
Length = 406 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 60/288 (20%), Positives = 111/288 (38%), Gaps = 22/288 (7%)
Query: 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133
AE+ + LT + + S A + GA+ G + GR+ ++ + V G L
Sbjct: 36 AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95
Query: 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F+ +F+ RL+ G G+G + Y+ E P+++R + +G ++A +
Sbjct: 96 FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155
Query: 194 GLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD 247
V WR L + +LP + IPE ED++
Sbjct: 156 YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPE----------AEDWKEKHAGKALVR 205
Query: 248 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS-GINGVLFYS 306
T + I + + +A+ A + KR+ + + + +L S I +
Sbjct: 206 TMVDI-LYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDL--LP 262
Query: 307 SNIFANAGISSSNVA--TFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352
+ + A+ G+S VA + +V V +L D GRR + S
Sbjct: 263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCS 310
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 96 VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155
+G ++ + SG + + GRK L++ ++ + + S + + L + R L+GFG
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 156 SYTVPVYIAEIAPQNMR----GSLGSVNQLSVTIGIMLAYLLGLFVNWRVL-AVLGVLPC 210
IA+I P R G + + L +G L +L F+ WR L +L
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 211 TLLIPGLFFIPES 223
I F +PE+
Sbjct: 129 AAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWLIISFSKDS 138
L L+ +E + SL +G ++GA+ G +++ +GR+ L++ + +G L+++ +
Sbjct: 206 LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL 265
Query: 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG--LF 196
+ L + LL GFG+G + +E+AP RG+ + ++G L LL L
Sbjct: 266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL 325
Query: 197 VNWRVLAVLGVLPCTLLIPGLFF 219
V +L L+ L
Sbjct: 326 DTGGYGGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 4/173 (2%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
E+ + LT + + S A + G + G + + GR+ +++I+ V +G L F
Sbjct: 45 EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF 104
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194
+ LF+ RL+ G G+ + Y+ E P+++R +IG ++A +
Sbjct: 105 APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164
Query: 195 LFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
V WR L +G+LP + +PE+ W K + + +L
Sbjct: 165 SLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
I +DL ++ + +G +GA + + R+ L+ I+ L+ +
Sbjct: 38 PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVN---QLSVTIGIMLA 190
+ + L + R L G GV A + P RG L V L+ +G+ L
Sbjct: 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157
Query: 191 YLLGLFVNWR----VLAVLGVLPCTLLI 214
LG WR +AVL +L LL
Sbjct: 158 TFLGQLFGWRATFLAIAVLALLALLLLW 185
|
Length = 394 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
I +DL LT E + + A +G G G +A+ GRK +M + V +G + +
Sbjct: 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLG 194
L + R + G G+ Y E P++++ + IG I+ AY +
Sbjct: 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163
Query: 195 LFVN---WRVLAVLGVLPCTLLIPGLFFIPESPRW 226
F WR +G+LP L+I PES W
Sbjct: 164 SFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198
|
Length = 426 |
| >gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%)
Query: 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136
+DL L+ +E + G +V A +GAI +G + E G K LMI V I L + F +
Sbjct: 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE 339
Query: 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLGL 195
++ LL G +G + Y+A + P+ G + L+ + +L+ +
Sbjct: 340 GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399
Query: 196 FVNWRVLAVLGVLPCTLL----IPGLFFIPESPR 225
+ GVL +L + L + R
Sbjct: 400 ITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGR 433
|
Length = 438 |
| >gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 86 EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM-G 144
FS GS+A ++G + ++ + GRK + ++G+LI F+ + L +
Sbjct: 258 LFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVL 317
Query: 145 RLLEGFGVGVISYTVPVYIAEI 166
+L GFG ++ V +A+
Sbjct: 318 IILAGFGQNFVTGLVWALVADT 339
|
The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII---GWLII 132
L L+ + LA + +G + G++++ +GR+ L++A + I+ G ++
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL 287
Query: 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA 190
S ++ S +L + LL GFG G++ + ++++AP+ RG+ + + ++G L
Sbjct: 288 SLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SKDSSFLFMG 144
FS+ + + A++GA +A+ G+K + ++ + IG +++ F +
Sbjct: 259 FSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVL 318
Query: 145 RLLEGFGVGVISYTVPVYIAEIA 167
+L G G+G+ + +A++
Sbjct: 319 VVLAGIGLGLATLLPWAMLADVV 341
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.98 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.98 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.96 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.96 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.96 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.95 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.95 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.94 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.94 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.94 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.94 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.94 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.93 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.92 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.92 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.92 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.92 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.91 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.89 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.89 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.89 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.89 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.88 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.88 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.87 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.84 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.84 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.84 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.84 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.83 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.82 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.79 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.77 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.76 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.74 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.73 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.73 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.72 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.69 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.69 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.68 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.68 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.65 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.65 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.64 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.64 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.63 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.62 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.61 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.6 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.6 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.59 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.58 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.57 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.57 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.55 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.55 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.55 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.54 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.53 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.53 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.51 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.5 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.49 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.47 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.46 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.45 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.44 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.44 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.43 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.43 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.42 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.41 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.41 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.41 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.41 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.41 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.39 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.38 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.36 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.35 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.35 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.35 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.35 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.34 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.34 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.32 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.31 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.31 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.31 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.26 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.26 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.26 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.24 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.24 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.24 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.23 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.22 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.22 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.22 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.22 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.21 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.21 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.2 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.2 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.19 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.18 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.16 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.15 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.15 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.15 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.13 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.13 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.12 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.12 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.11 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.11 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.11 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.09 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.09 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.08 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.08 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.07 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.06 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.06 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.05 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.05 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 99.04 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.04 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.04 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.03 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.02 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.01 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 99.0 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.98 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.98 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.94 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.93 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.91 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.89 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.89 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.86 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.85 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.85 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.81 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.79 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.76 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.75 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.75 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.7 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.66 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.65 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.65 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.62 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.6 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.6 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.6 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.58 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.56 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.56 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.55 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.49 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.46 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.45 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.42 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.39 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.39 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.34 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.34 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.34 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.22 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.22 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.17 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.14 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.1 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.1 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.08 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 98.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.91 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.81 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.81 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.78 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.68 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.66 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.65 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.47 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.46 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.2 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.11 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.1 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.97 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.89 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.65 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.31 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 96.31 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.1 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 95.87 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.77 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 95.74 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 95.73 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.71 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.83 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 94.4 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 94.29 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 93.84 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.62 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 92.54 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.28 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 87.52 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 87.5 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 86.7 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 82.48 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.56 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=268.52 Aligned_cols=330 Identities=34% Similarity=0.597 Sum_probs=274.6
Q ss_pred CcchhhHHHHHHHHHHHhhhcccccCcccHHHHH--------Hhhc--CCchh----hHHHHhhhHHHHHHHHHHHHHHH
Q 015963 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEII--------SDLK--LTISE----FSIFGSLANVGAMVGAIASGQIA 109 (397)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~--~s~~~----~~~~~s~~~~~~~~~~~~~g~l~ 109 (397)
..++.........++.+-.|+..+..++..+.+. +.+| .++++ .+.+.+++.+|.++|+++.|.++
T Consensus 5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la 84 (485)
T KOG0569|consen 5 LTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA 84 (485)
T ss_pred ccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777999999999998766443 3345 33333 57889999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHH
Q 015963 110 EYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (397)
Q Consensus 110 dr~Grr~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 186 (397)
||+|||..+.++.++..++.++..++ +++.+++++|++.|+..|......+.++.|..|.+.||....+.+.+..+|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 99999999999988888888777654 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhh------hhHHHHHHhHHHHHHHHhhhccccCChhHHHh-cCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 015963 187 IMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK-MGMTEDFESSLQVLRGFDTDISIEVNEIKR 259 (397)
Q Consensus 187 ~~~~~~i~~~~------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (397)
..++..++.-- .|++.+.+..+++++.++...++||+|||+.. +++.++|.+.+++.++.+++..+..++.++
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e 244 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLRE 244 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 99997766222 69999999999999999999999999999987 899999999999999987544333333333
Q ss_pred HHhh-hcchhhhhHHHHHhcc-chhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHH
Q 015963 260 SVAS-SSRRTAIRFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGV 335 (397)
Q Consensus 260 ~~~~-~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~ 335 (397)
..++ ..+++..+++++++++ .+++..+.+.+....++.+.+.+.+|.+.++++.|++... +.....++...+.+++
T Consensus 245 ~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~ 324 (485)
T KOG0569|consen 245 IEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLV 324 (485)
T ss_pred HHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2223666788888874 5556777888889999999999999999999999998775 7788889999999999
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 015963 336 NTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEVGH 373 (397)
Q Consensus 336 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (397)
+.+++||+|||++++.+..++.+..+++..........
T Consensus 325 ~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~ 362 (485)
T KOG0569|consen 325 SPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF 362 (485)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998888776554443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=271.92 Aligned_cols=328 Identities=37% Similarity=0.604 Sum_probs=274.2
Q ss_pred CcchhhHHHHHHHHHHHhhhcc--cccCcccHHHHHHhhc-----CCc--hhhHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 015963 44 GSVSVVFCVLVVALGPIQFGFT--CGYSSPTQAEIISDLK-----LTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGR 114 (397)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~-----~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr 114 (397)
.............++.+..+++ .+...+....++++.. .+. .+.+|+.+++.++..+++++.|+++|++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GR 118 (513)
T KOG0254|consen 39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGR 118 (513)
T ss_pred CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445556666667777777776 6677777777777432 122 345899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 015963 115 KGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (397)
Q Consensus 115 r~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (397)
|+.++++.+++.++.+++++++|+.+++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++
T Consensus 119 k~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 119 KKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhh-----hhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCC-CchhHHHHHHHHHH-Hh-hhcc
Q 015963 195 LFV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF-DTDISIEVNEIKRS-VA-SSSR 266 (397)
Q Consensus 195 ~~~-----~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~ 266 (397)
... +||..+.+..+++++..+..+++||+|+|+.++++.+++.+.+.++++. +.+.+.+.++.+.. .. ....
T Consensus 199 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
T KOG0254|consen 199 YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVA 278 (513)
T ss_pred hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 666 6999999999998888777888999999999999999999999999984 33444444333311 11 1111
Q ss_pred hhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCch-hHHHHHHHHHHHHHHHHHHHHHHHhch
Q 015963 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSS-NVATFGLGVVQVVATGVNTWLMDKAGR 345 (397)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~l~d~~~~ 345 (397)
+.+..+.+++++...++..+...+..+.++++.+...+|.+.+++..|.+.. .......++..+++.+++.++.||+||
T Consensus 279 ~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gR 358 (513)
T KOG0254|consen 279 EGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGR 358 (513)
T ss_pred cccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222466677666777888899999999999999999999999999988766 566777888899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015963 346 RLLLLISSSGMAASFFLVSVAFFLEV 371 (397)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (397)
|++++.+...+.+++++++.......
T Consensus 359 r~lll~s~~~m~~~~~~~~~~~~~~~ 384 (513)
T KOG0254|consen 359 RKLLLFGAAGMSICLVILAVVGVFAL 384 (513)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988766543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=276.33 Aligned_cols=266 Identities=24% Similarity=0.277 Sum_probs=214.7
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l 124 (397)
.+..|.++++++++.+..+++...+++++|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++++.++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45677788888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-------
Q 015963 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------- 197 (397)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------- 197 (397)
.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++...++.+|.++++.++..+
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999999999999999999999999999999998888755221
Q ss_pred ----------hhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchh---HHH---HHHHHHHH
Q 015963 198 ----------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI---SIE---VNEIKRSV 261 (397)
Q Consensus 198 ----------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~ 261 (397)
+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+... ..+ .+..+...
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 69999999888888887778889999999999999999999999987765321 000 00111000
Q ss_pred ------hhhcch-----------------hhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHh
Q 015963 262 ------ASSSRR-----------------TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA 311 (397)
Q Consensus 262 ------~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (397)
+.++.. ....++++++++.+++++++ .+.++.....++.+..|.|.+++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l-~~~wf~~~~~yygl~~w~P~~~~ 473 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKL-MGVWFTLSFGYYGLSVWFPDMIK 473 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00134556666555555554 44455555678889999997754
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=258.94 Aligned_cols=316 Identities=31% Similarity=0.478 Sum_probs=239.2
Q ss_pred chhhHHHHHHHHHHHhhhcccccCcccHHHHHHhh--------cCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhH
Q 015963 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL--------KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117 (397)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 117 (397)
+....+.++..++.+.++++.+.+++..|.+++++ +.+.++.+++.+++.++..+++++.|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34556667777888999999999999999999988 7888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh------------cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHH
Q 015963 118 LMIAAVPNIIGWLIISFS------------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI 185 (397)
Q Consensus 118 ~~~~~~l~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 185 (397)
++.+.++++++.+.++++ ++++.+++.|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999998888763 22467789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh------------hhhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHH
Q 015963 186 GIMLAYLLGLF------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 253 (397)
Q Consensus 186 g~~~~~~i~~~------------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (397)
|..+++.++.. .+||+.|++.+++.++..+..+++||+|+++.++++.+++.+...+..+.+.. ...
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-TQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH-HHH
Confidence 99988776532 38999999988877777666777899999988888888777666665443311 111
Q ss_pred HHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHH
Q 015963 254 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVV 331 (397)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~ 331 (397)
.++..+...+++. ..+..+. ..............+.+..+.+...++.|.+.++.|.+... ......++..++
T Consensus 247 ~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i 321 (479)
T PRK10077 247 LQEIKHSLDHGRK----TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT 321 (479)
T ss_pred HHHHHHHHHHhhh----hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 1111111100000 0001111 01111122222333444445556677888888888876553 555567788899
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 015963 332 ATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (397)
Q Consensus 332 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (397)
+.++.++++||+|||+.++.+..+++++.+++....
T Consensus 322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~ 357 (479)
T PRK10077 322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 357 (479)
T ss_pred HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888887776543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=262.24 Aligned_cols=320 Identities=18% Similarity=0.213 Sum_probs=236.9
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhh-----cCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHH
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-----KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 119 (397)
.+..+.+..++.++.+.++++.+..+...|.+.+++ +.+..+.+++.+.+.+++.+++++.|+++||+|||+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~ 90 (502)
T TIGR00887 11 GWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYG 90 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 456667778888899999999999999999887753 345567799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc------hhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015963 120 IAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (397)
Q Consensus 120 ~~~~l~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 193 (397)
++.++..++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|..+++.+
T Consensus 91 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~ 170 (502)
T TIGR00887 91 MELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIV 170 (502)
T ss_pred HHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 67899999999999999999999999999999999999999999999998888776
Q ss_pred hhh---------------------------hhhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHH-HHHHHHHHHhC
Q 015963 194 GLF---------------------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTE-DFESSLQVLRG 245 (397)
Q Consensus 194 ~~~---------------------------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 245 (397)
+.. .+||+.+.+.+++.++..+..+++||+|+|+..+++.+ ++.+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 171 ALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 532 16999999988888887777788999999998877764 45555555543
Q ss_pred CCchhHHHHHHHHHHHhhhcchhhhhHHHHHhcc---chhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh---
Q 015963 246 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR---YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--- 319 (397)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--- 319 (397)
.+.+.+. ++.++..+ +++..+.+++++++++ ..++..+.....++.....++....|.|.++++.|.+...
T Consensus 251 ~~~~~~~--~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~ 327 (502)
T TIGR00887 251 VKIEAEP--DEVEKAST-AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATN 327 (502)
T ss_pred cccccCc--ccccchhc-cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccch
Confidence 2211110 11110000 1111223566666532 1222223222333333333455667788888887775431
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 015963 320 -----------VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (397)
Q Consensus 320 -----------~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (397)
.......++.+++.++.++++||+|||+.++.+..++.++++++....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~ 386 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY 386 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 012333456677889999999999999999888888877776666543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=254.15 Aligned_cols=323 Identities=35% Similarity=0.604 Sum_probs=244.2
Q ss_pred CcchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCC--------chhhHHHHhhhHHHHHHHHHHHHHHHhhhcch
Q 015963 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (397)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s--------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 115 (397)
..++.+...+++.++.+..+++...+.+..|.+..+++.+ ..+.+++.+++.++..+++++.|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 3355556666677777888899999999999999988877 78999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHH
Q 015963 116 GSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (397)
Q Consensus 116 ~~~~~~~~l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (397)
++++.+.++..++.+++.+.+ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999996654 44589999999999999999999999999999999999999999999999999999
Q ss_pred hh---hh----hhhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHH---HHHHHHh
Q 015963 193 LG---LF----VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN---EIKRSVA 262 (397)
Q Consensus 193 i~---~~----~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 262 (397)
++ .. .+||+.|++.++..++.++..+++||+|++...+++.++..+...+....+.......+ ......+
T Consensus 182 ~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
T TIGR00879 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRS 261 (481)
T ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 98 33 38999999977777766666778899998877777766655555544333221111111 1011111
Q ss_pred hhcchhhhhHHHHHhcc--chhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHH
Q 015963 263 SSSRRTAIRFAELKRKR--YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTW 338 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~ 338 (397)
.+.+..+..++++++.. ..++.++...+..+..........++.|.+.++.|.+... .......++.+++.++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 341 (481)
T TIGR00879 262 IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIF 341 (481)
T ss_pred HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111233443322 2344455555555555555566778888888888887744 5556677888999999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 015963 339 LMDKAGRRLLLLISSSGMAASFFLVSVA 366 (397)
Q Consensus 339 l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (397)
++||++||+.+..+..+.+++++.+...
T Consensus 342 l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (481)
T TIGR00879 342 LVDRFGRRPLLLIGAAGMAICLFVLGIL 369 (481)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888877777766643
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=239.89 Aligned_cols=292 Identities=17% Similarity=0.156 Sum_probs=232.5
Q ss_pred cCCcchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHH
Q 015963 42 RDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (397)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 121 (397)
+..++.++-+...+.+++...++.+..++...|.+.++.++|.+|.|.+.+.+++.|.++..+.|.++||.+.|+.+.++
T Consensus 21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g 100 (448)
T COG2271 21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence 34456677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhh--hhh--
Q 015963 122 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG--LFV-- 197 (397)
Q Consensus 122 ~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~--~~~-- 197 (397)
+++.++.+++++++++.+.+.+..+++|...|...|.+...+..|+++++||+..++++++.++|..+.|++. +++
T Consensus 101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888877 554
Q ss_pred --hhHHHHHHhHHHHHHHH-hhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchh-hhhHH
Q 015963 198 --NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRT-AIRFA 273 (397)
Q Consensus 198 --~w~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 273 (397)
+||..|++.++++++.. +.++..+|+|+.. +.+ +.++..++..+..+++++.+ ...++
T Consensus 181 ~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~-----------------GLP-~ie~~~~d~~e~~~~~~~~~~ls~~~ 242 (448)
T COG2271 181 HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE-----------------GLP-PIEEYRGDPLEIYEEEKENEGLTAWQ 242 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc-----------------CCC-CHHHhhcCchhhhhhhccCCCccHHH
Confidence 89999999998877664 4566678888521 111 00000000001001111111 22233
Q ss_pred HHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh--chhHH
Q 015963 274 ELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLL 348 (397)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~--~~~~~ 348 (397)
.+++.-..++.++.+++.....+..-+.+..|.|.++.| .|++... .....+-.++++|+++.||++||+ |||.+
T Consensus 243 i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p 322 (448)
T COG2271 243 IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP 322 (448)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch
Confidence 333334445667777777777777788999999999876 4776555 667778899999999999999998 45655
Q ss_pred HHH
Q 015963 349 LLI 351 (397)
Q Consensus 349 ~~~ 351 (397)
..+
T Consensus 323 ~~~ 325 (448)
T COG2271 323 MAL 325 (448)
T ss_pred HHH
Confidence 443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=234.59 Aligned_cols=277 Identities=18% Similarity=0.228 Sum_probs=223.8
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
..+..++...++.|..+.+..+...++|++.+|+|+|..+.|++.|+|.+++.++.++...+.||+.||++++..+.++.
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 44566677788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 015963 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (397)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (397)
++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++ |||+.
T Consensus 90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~ 169 (394)
T COG2814 90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169 (394)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888887766555 99999
Q ss_pred HHHhHHHHHHHHh-hhcccc-CChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccc
Q 015963 203 AVLGVLPCTLLIP-GLFFIP-ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRY 280 (397)
Q Consensus 203 f~~~~~~~~~~~~-~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (397)
|++.+.++++..+ .+..+| .+++ +++..+..+..++++++.
T Consensus 170 F~~ia~l~ll~~~~~~~~lP~~~~~-------------------------------------~~~~~~~~~~~~~l~~p~ 212 (394)
T COG2814 170 FLAIAVLALLALLLLWKLLPPSEIS-------------------------------------GSLPGPLRTLLRLLRRPG 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCC-------------------------------------CCCCcchhHHHHHhcCch
Confidence 9999988888765 456678 1110 011122223445566655
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 015963 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMA 357 (397)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~ 357 (397)
.+..+....+.+. +.+....|...+++ ..|++... +....++++.++|..++|++.|| +.|+.+.....+..
T Consensus 213 v~~~l~~t~l~~~----g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a 287 (394)
T COG2814 213 VLLGLLATFLFMT----GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA 287 (394)
T ss_pred HHHHHHHHHHHHc----chhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence 5444444333333 34444455444454 45777665 77888999999999999999999 88888887777777
Q ss_pred HHHHHHHH
Q 015963 358 ASFFLVSV 365 (397)
Q Consensus 358 ~~~~~~~~ 365 (397)
+.++.+.+
T Consensus 288 ~~~l~l~~ 295 (394)
T COG2814 288 LALLALTF 295 (394)
T ss_pred HHHHHHHH
Confidence 66666544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=252.54 Aligned_cols=290 Identities=24% Similarity=0.374 Sum_probs=225.6
Q ss_pred ccHHHHHHhhcCC---chhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 015963 71 PTQAEIISDLKLT---ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (397)
Q Consensus 71 ~~~~~i~~~~~~s---~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 147 (397)
+..|.+.+|+|++ ..+.++..+++.++..+++++.|+++||+|||++++++.++.+++.++++++++++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 5677899999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHhHHHHHHHHhhhccccCChhH
Q 015963 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGVLPCTLLIPGLFFIPESPRW 226 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-~w~~~f~~~~~~~~~~~~~~~~~~e~~~~ 226 (397)
.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.+++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999998766 89999999988887777767789999999
Q ss_pred HHhcCCHHHHHHHHHHHhCCCchhHH-HHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHh
Q 015963 227 LAKMGMTEDFESSLQVLRGFDTDISI-EVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFY 305 (397)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (397)
+..+++.+++.+..++..+.+..... +..+.....+.+++.++..++++++++..+...+.....++.....++.+..+
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD 349 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999988887776544332111 11111101111111123467788887766666555544444332222222222
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 306 SSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
..+.+.+ ........++..+++.++.+++.||+|||+.+..+.++.+++++++..
T Consensus 350 ----~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~ 404 (505)
T TIGR00898 350 ----LGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF 404 (505)
T ss_pred ----ccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 2223332 224445667888899999999999999999999888887777765554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=238.93 Aligned_cols=292 Identities=14% Similarity=0.130 Sum_probs=214.7
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
.+|.....+++.++.++++....+...|.+++|+|.+.++.+++.+++.+++++++++.|+++||+|||+++..+.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 34556677777778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhh----------
Q 015963 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF---------- 196 (397)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~---------- 196 (397)
++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++.+++.
T Consensus 85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 164 (412)
T TIGR02332 85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMAL 164 (412)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999888754
Q ss_pred hhhHHHHHHhHHHHHHH-HhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHH
Q 015963 197 VNWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAEL 275 (397)
Q Consensus 197 ~~w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 275 (397)
.+||+.|++.+++.++. .+.++++||+|+... ..+.++.+...+..+....+.+. . ++..++++......++++
T Consensus 165 ~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 239 (412)
T TIGR02332 165 KGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLTLEQ-P---EGAFAHAAMPQRSMLREI 239 (412)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhccccccc-c---ccccccccccHHHHHHHh
Confidence 28999999988777655 445567788874210 00111111111111111000000 0 000000000111123333
Q ss_pred HhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc--CCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHH
Q 015963 276 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA--GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLL 348 (397)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 348 (397)
++ +.++......++.....+.+..|.|.++++. +.++.. .......++.+++.++.++++||+++|+.
T Consensus 240 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 240 FT-----PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred cC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 22 2233344444455555677888999999875 444433 55667788899999999999999987664
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=243.14 Aligned_cols=283 Identities=18% Similarity=0.233 Sum_probs=207.2
Q ss_pred HHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchh-hHH-----HHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015963 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISE-FSI-----FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (397)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l 124 (397)
......++.+++++|...++...|.+.++++.+.++ .++ +.++.++++.+++++.|+++||+|||+++.++.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 455667788999999999999999999999654332 222 25778899999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhH--------HHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhh-
Q 015963 125 NIIGWLIISFSKDSSF--------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL- 195 (397)
Q Consensus 125 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~- 195 (397)
++++++++++++|+.. ++++|+++|++.|+.++...+++.|++|+++|+++.++.+.+..+|..+++.+..
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 7889999999999999999999999999999999999999888888777764432
Q ss_pred -----------hhhhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhh
Q 015963 196 -----------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 264 (397)
Q Consensus 196 -----------~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (397)
..|||+.|++.+++.++.+++...+||+|++..++++.++.. .+..
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~-----------------------~~~~ 233 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD-----------------------REGL 233 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc-----------------------cccc
Confidence 238999999988776666666667899988653322111100 0000
Q ss_pred cchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHH
Q 015963 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d 341 (397)
++.++.++++++++ .++....... ..+.....++.+..|.|.++++ .|.+... .......++.+++.++.|+++|
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d 311 (490)
T PRK10642 234 QDGPKVSFKEIATK-HWRSLLTCIG-LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD 311 (490)
T ss_pred cccccCCHHHHHHH-hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112234555553 2223222222 2222334456677788888854 5776554 4445566778889999999999
Q ss_pred HhchhHHHHHHHHHHHH
Q 015963 342 KAGRRLLLLISSSGMAA 358 (397)
Q Consensus 342 ~~~~~~~~~~~~~~~~~ 358 (397)
|+|||+.+..+.....+
T Consensus 312 r~grr~~~~~~~~~~~~ 328 (490)
T PRK10642 312 RFGRRPFVILGSVALFV 328 (490)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 99999988777654443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=238.75 Aligned_cols=273 Identities=21% Similarity=0.202 Sum_probs=198.8
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhc---CCchhhHHHHhhhH---HHHHHHHHHHHHHHhhhcchhHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLK---LTISEFSIFGSLAN---VGAMVGAIASGQIAEYIGRKGSLMI 120 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~s~~~---~~~~~~~~~~g~l~dr~Grr~~~~~ 120 (397)
+++..+...+++.+.+++|...++...|.+.++++ .+..+.+...+++. ++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45556666778888899999999999999999985 45555444444444 4445999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchh--------HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHH
Q 015963 121 AAVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (397)
Q Consensus 121 ~~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (397)
+.++++++++++++++++. .+++.|+++|++.|..++...+++.|++|+++|+++.++.+.+...|..+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 58899999999999999999999999999999999999988888888777765
Q ss_pred hhh------------hhhhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 015963 193 LGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRS 260 (397)
Q Consensus 193 i~~------------~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (397)
+.. ..|||+.|++.+++.++.......+||+|++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~------------------------------- 227 (432)
T PRK10406 179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR------------------------------- 227 (432)
T ss_pred HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-------------------------------
Confidence 432 2489999999888777665555567777542100
Q ss_pred HhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHH
Q 015963 261 VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNT 337 (397)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~ 337 (397)
+ .++..+++++++++..+...+ .........++.+..|.|.++++ .|.+..+ .......+...++.++.|
T Consensus 228 -~---~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G 300 (432)
T PRK10406 228 -A---LKEAGSLKGLWRNRRAFIMVL---GFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIG 300 (432)
T ss_pred -h---hcccccHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000123455655443222111 11222223345567788887754 5776544 344455666678888999
Q ss_pred HHHHHhchhHHHHHHHHHHH
Q 015963 338 WLMDKAGRRLLLLISSSGMA 357 (397)
Q Consensus 338 ~l~d~~~~~~~~~~~~~~~~ 357 (397)
+++||++||+.+..+..+..
T Consensus 301 ~l~Dr~grr~~~~~~~~~~~ 320 (432)
T PRK10406 301 ALSDKIGRRTSMLCFGSLAA 320 (432)
T ss_pred HHHHHcCchHHHHHHHHHHH
Confidence 99999999988766555433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=242.47 Aligned_cols=315 Identities=13% Similarity=0.069 Sum_probs=226.7
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
++|.++..++++.++..+|.++.+..+|.+.+|+|.+.++.+|+.+.|.+++.+++++.|+++||+|||++++.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~ 82 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG 82 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheec-CCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHH
Q 015963 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (397)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~ 201 (397)
++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|++++++......+|..+||.+++.+ +|||
T Consensus 83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~ 162 (495)
T PRK14995 83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGS 162 (495)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH
Confidence 99999999999999999999999999999988888777765 678999999999999999999999999777 8999
Q ss_pred HHHHhHHHHHHHHh-hhccccCChhHHHhcCCHHHHHHH-------HHHHhCCCchhHHHHHH----------HHH-HHh
Q 015963 202 LAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESS-------LQVLRGFDTDISIEVNE----------IKR-SVA 262 (397)
Q Consensus 202 ~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~----------~~~-~~~ 262 (397)
.|++...+.++.++ ..+++||+++...++.+....... ...+.....+......- ... ...
T Consensus 163 ~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~ 242 (495)
T PRK14995 163 VFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRT 242 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99998776666544 445567765321111111110000 00000000000000000 000 000
Q ss_pred hhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHH
Q 015963 263 SSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWL 339 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l 339 (397)
+.+.+.+....++++++............ ........++.|.++++ .|.++.+ ....+..++..++.++.|++
T Consensus 243 e~~~~~p~~~~~lf~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l 318 (495)
T PRK14995 243 QLAASRPMIDMRLFTHRIILSGVVMAMTA----MITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGIL 318 (495)
T ss_pred HhcCCCCCcCHHHhCCcccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111223566665444333322222 22234556677777765 5777666 66667788889999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 340 MDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
.||+|+|+.+..+..+..++.+.+..
T Consensus 319 ~~r~g~~~~~~~g~~~~~~~~~~l~~ 344 (495)
T PRK14995 319 VSRLGLRLVATGGMALSALSFYGLAM 344 (495)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777777665543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-29 Score=231.69 Aligned_cols=299 Identities=20% Similarity=0.199 Sum_probs=216.5
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l 124 (397)
++++|.....++++.+.++++....++..|.+++++|.+.++.+++.+++.++..+++++.|.++||+|||+++..+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~ 86 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL 86 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45667777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h--
Q 015963 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-- 198 (397)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-- 198 (397)
.++++++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.++..+ +
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~ 166 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDG 166 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887655 4
Q ss_pred hHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhc
Q 015963 199 WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278 (397)
Q Consensus 199 w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (397)
||+.|++.++..++.++....+||++++..++++.++..+..++..+.... .+.. .++.....++. .
T Consensus 167 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~--~ 233 (405)
T TIGR00891 167 WRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHR-------IANI----VMTLAAAMVQS--A 233 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchh-------hhhh----hhhhhHHhhhh--h
Confidence 999999877766666555666788765433222111111111111100000 0000 00000001110 1
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q 015963 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG 355 (397)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~ 355 (397)
+..+......................+.|.++. +.|.+..+ .......++.+++.++.+++.||++||+.+..+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~ 313 (405)
T TIGR00891 234 GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA 313 (405)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHH
Confidence 111121111111112112222334455566654 45776655 555667888999999999999999999988777655
Q ss_pred H
Q 015963 356 M 356 (397)
Q Consensus 356 ~ 356 (397)
.
T Consensus 314 ~ 314 (405)
T TIGR00891 314 G 314 (405)
T ss_pred H
Confidence 4
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-29 Score=233.68 Aligned_cols=291 Identities=19% Similarity=0.160 Sum_probs=217.5
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
.++.....+.++.+.++++.....+..|.+++++|+++.+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~ 94 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 33444567777778888999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 015963 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (397)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (397)
++.++++++++++.++++|+++|++.+..++....++.|++|+++|+++.++...+..+|.++++.+...+ +||+.
T Consensus 95 ~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~ 174 (426)
T PRK12307 95 VGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA 174 (426)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877554 89999
Q ss_pred HHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchh
Q 015963 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (397)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (397)
|++..+..++........||++++..++.+ ..+++ .+...+.....++++++++..+
T Consensus 175 f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 231 (426)
T PRK12307 175 FFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKGKH-----------SQSAWSVFSLSMKGLFNRAQFP 231 (426)
T ss_pred HHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------ccccc-----------cccchhhhhHHHHHHHhhchHH
Confidence 988655443333333334565433211100 00000 0000001122455666665554
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 015963 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (397)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (397)
.........+ ..+.....+..+.|.++++.|.++.. .......++.++++++.+++.||++||+.+..+..+..+..
T Consensus 232 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 310 (426)
T PRK12307 232 LTLCVFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFI 310 (426)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4333322222 22223334566778888877876555 44566778889999999999999999998887776665544
Q ss_pred H
Q 015963 361 F 361 (397)
Q Consensus 361 ~ 361 (397)
+
T Consensus 311 ~ 311 (426)
T PRK12307 311 F 311 (426)
T ss_pred H
Confidence 4
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-30 Score=241.36 Aligned_cols=295 Identities=17% Similarity=0.081 Sum_probs=211.1
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l 124 (397)
.+..+.+.....++++....++..+++..|.+.+|+|++.++.|++.+++.+++++++++.|+++||+|||+++..+.++
T Consensus 24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~ 103 (467)
T PRK09556 24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence 34456667777788888888999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHh-----hcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--
Q 015963 125 NIIGWLIISF-----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-- 197 (397)
Q Consensus 125 ~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-- 197 (397)
++++.+..+. +++++.+++.|+++|++.+...+...+++.|++|+++|++++++++.+..+|..+++.+..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 104 SAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 8887776665 589999999999999999999999999999999999999999999999999999988876432
Q ss_pred -----hhHHHHHHhHHHHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhh
Q 015963 198 -----NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR 271 (397)
Q Consensus 198 -----~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (397)
+||..|.+.+++.++..+ .+++.+++|+..... +.++. ..... + .+ + +..+.++......
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~~------~~~~~-~--~~--~--~~~~~~~~~~~~~ 249 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEEI------FGEPI-S--EE--D--KETESTDMTKWQI 249 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhhc------ccCcc-c--hh--h--hccccccCcHHHH
Confidence 588888887776665544 344556666421110 11110 00000 0 00 0 0000000000011
Q ss_pred -HHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 015963 272 -FAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL 347 (397)
Q Consensus 272 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 347 (397)
.+..++++..+ ...+..++..........|.|.++++ .|.+..+ .......++.+++.++.|+++||++||+
T Consensus 250 ~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~ 325 (467)
T PRK09556 250 FVEYVLKNPVIW----LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR 325 (467)
T ss_pred HHHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 12234444333 23333333334445677888988864 6887655 5555677889999999999999999988
Q ss_pred HHHHHHHHHH
Q 015963 348 LLLISSSGMA 357 (397)
Q Consensus 348 ~~~~~~~~~~ 357 (397)
.+........
T Consensus 326 ~~~~~~~~~~ 335 (467)
T PRK09556 326 ALVACIALAL 335 (467)
T ss_pred hHHHHHHHHH
Confidence 7665544433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=229.00 Aligned_cols=285 Identities=20% Similarity=0.261 Sum_probs=218.1
Q ss_pred chhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Q 015963 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (397)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~ 125 (397)
++.|.+..+++...+.++++....++..|.+.+++|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF 90 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 36677888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHH
Q 015963 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (397)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~ 201 (397)
.++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 170 (406)
T PRK11551 91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH 170 (406)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887554 8999
Q ss_pred HHHHhHHHHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccc
Q 015963 202 LAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRY 280 (397)
Q Consensus 202 ~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (397)
.|++.++..++..+ ...++||+|++..++.+.++ ++...+..++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~ 218 (406)
T PRK11551 171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQ--------------------------------RAPVLRALFGEGR 218 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchh--------------------------------hhhhHHHHhhhhh
Confidence 99987765554443 44567888754222110000 0000011111111
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 015963 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358 (397)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~ 358 (397)
.+... ......+......+....|.|.++++.|.++.. .......++.++++++.|++.||++||+.+..+.....+
T Consensus 219 ~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 297 (406)
T PRK11551 219 ATATL-LLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILA 297 (406)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11111 111112222223445666788888888887655 566677888999999999999999999988776555555
Q ss_pred HHHHH
Q 015963 359 SFFLV 363 (397)
Q Consensus 359 ~~~~~ 363 (397)
+++.+
T Consensus 298 ~~~~~ 302 (406)
T PRK11551 298 SLAAL 302 (406)
T ss_pred HHHHH
Confidence 44433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=226.90 Aligned_cols=269 Identities=13% Similarity=0.138 Sum_probs=197.9
Q ss_pred hHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015963 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~ 128 (397)
|.....+.++.+..........+.+|.+.+++|.|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 87 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIAS 87 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 33333444443443334445566789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHH
Q 015963 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAV 204 (397)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~ 204 (397)
++++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|+
T Consensus 88 ~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~ 167 (390)
T PRK03545 88 HVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFL 167 (390)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888654 8999999
Q ss_pred HhHHHHHHHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhh
Q 015963 205 LGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (397)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 283 (397)
+.+++.++..+. ...+||+|+. + +...++.++.++++..+.
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~~---~-----------------------------------~~~~~~~~~~~~~~~~~~ 209 (390)
T PRK03545 168 AIGGGALITLLLLIKLLPLLPSE---H-----------------------------------SGSLKSLPLLFRRPALVS 209 (390)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC---C-----------------------------------cchHHHHHHHHhCcHHHH
Confidence 988876665443 3445664320 0 000112334555554443
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 015963 284 LMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (397)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (397)
......+.... ......+.+.++++ .|.+... ......+++.++++++.+++.||+++|... .+..+..++.
T Consensus 210 ~~~~~~~~~~~----~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 210 LYLLTVVVVTA----HFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHH
Confidence 33222222221 22233444545554 5776654 555667788999999999999999987653 3444443333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=225.76 Aligned_cols=278 Identities=19% Similarity=0.171 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHhhhcccccCcccHHH-HHHhh--cCCchhhHHHH-----hhhHHHHHHHHHHHHHHHhhhcchhHHHHH
Q 015963 50 FCVLVVALGPIQFGFTCGYSSPTQAE-IISDL--KLTISEFSIFG-----SLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (397)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 121 (397)
.......++.+.+++|...++...|. +.+++ +.++. .+++. ++.+++..+++++.|+++||+|||+++..+
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~ 100 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 45566677888899999988887764 55555 66665 45543 345566789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchh--------HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015963 122 AVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (397)
Q Consensus 122 ~~l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 193 (397)
.++++++++++++++++. .++++|+++|++.|..++....++.|++|+|+|++..+..+.+..+|..++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~ 180 (438)
T PRK09952 101 VWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGL 180 (438)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 588899999999999999999999999999999999999999999998888655
Q ss_pred hh------------hhhhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 015963 194 GL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSV 261 (397)
Q Consensus 194 ~~------------~~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (397)
.. ..+||+.|++.+++.++........||+|++..++++.++
T Consensus 181 ~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~-------------------------- 234 (438)
T PRK09952 181 VSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA-------------------------- 234 (438)
T ss_pred HHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc--------------------------
Confidence 42 2489999999887766555555567888764322110000
Q ss_pred hhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHH
Q 015963 262 ASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTW 338 (397)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~ 338 (397)
.+++....+.+++++..+.. .....+......+....|.|.+++ +.|.+... ......++..+++.++.|+
T Consensus 235 ---~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~ 308 (438)
T PRK09952 235 ---AKKRIPVIEALLRHPGAFLK---IIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAW 308 (438)
T ss_pred ---ccccCCHHHHHHHchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111223333322221 111122222234455567776664 35665544 2333456677788899999
Q ss_pred HHHHhchhHHHHHHHHHHHHHH
Q 015963 339 LMDKAGRRLLLLISSSGMAASF 360 (397)
Q Consensus 339 l~d~~~~~~~~~~~~~~~~~~~ 360 (397)
++||++||+.+..+.++..++.
T Consensus 309 l~Dr~grr~~~~~~~~~~~~~~ 330 (438)
T PRK09952 309 LADRFGRRRVYITGALIGTLSA 330 (438)
T ss_pred HHHHhCchHHHHHHHHHHHHHH
Confidence 9999999998887766554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=224.44 Aligned_cols=299 Identities=19% Similarity=0.251 Sum_probs=213.8
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
+.+.......+..+..+++.....+..|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFS 93 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555666667777777778888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 015963 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (397)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (397)
++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+ +||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 173 (398)
T TIGR00895 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL 173 (398)
T ss_pred HHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999888665 89999
Q ss_pred HHHhHHHHHH-HHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccch
Q 015963 203 AVLGVLPCTL-LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (397)
Q Consensus 203 f~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (397)
+++.++..++ .++...++||++++..++ +.++..+..++......+...+ +.++ .+.+++..+...+.+++++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 249 (398)
T TIGR00895 174 FYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPE-QKATQGTKRSVFKALFQGKTA 249 (398)
T ss_pred hhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccc-cccccchhhHHHHHHhcchhH
Confidence 9888654444 344556678887665444 3333322222221111000000 0000 000001111122223333333
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 015963 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 350 (397)
+.... .....+...........+.|.+.++.|.++.. .......++.+++.++.+++.||+++|+...
T Consensus 250 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (398)
T TIGR00895 250 RITVL-LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL 319 (398)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 33222 22222333344556667778777777876655 5566778889999999999999999984443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=227.90 Aligned_cols=278 Identities=14% Similarity=0.117 Sum_probs=201.5
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
.++.......++.+...++...+++..|.+.+++|.|.++.+++.+++.+++.+++++.|+++||+|||+++.++.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 33445555666667777777788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 015963 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (397)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (397)
++.++++++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.+.+.+ +||+.
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~ 179 (434)
T PRK11663 100 IINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYG 179 (434)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887665 89999
Q ss_pred HHHhHHHHHHH-HhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHH-HHHhccc
Q 015963 203 AVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFA-ELKRKRY 280 (397)
Q Consensus 203 f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 280 (397)
|++.+++.++. ++..+++||+|++...+...++.. +. ++..++.+.++.+.+..++ ..++++.
T Consensus 180 f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (434)
T PRK11663 180 MMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-----------DA----LELAQQQEGAGLSRKEILTKYVLLNPY 244 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-----------cc----cccchhccccCCChhhhHHHHHhcChH
Confidence 99887766544 334456788765321110000000 00 0000000000000000111 1233332
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh
Q 015963 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (397)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~ 343 (397)
.+.. .+..+........+..|.|.++. +.|.+..+ .......++.++++++.|+++||+
T Consensus 245 ~~~~----~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 245 IWLL----SFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 2222 22222233334556678888884 45777655 556677888999999999999998
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=225.40 Aligned_cols=258 Identities=14% Similarity=0.133 Sum_probs=180.0
Q ss_pred HHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcc
Q 015963 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD 137 (397)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~ 137 (397)
..+...+......+..|.+.+++|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus 44 ~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s 123 (476)
T PLN00028 44 SFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS 123 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444456678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHH----HHhhh---------hhhhHHHHH
Q 015963 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA----YLLGL---------FVNWRVLAV 204 (397)
Q Consensus 138 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~----~~i~~---------~~~w~~~f~ 204 (397)
++.++++|++.|++.+... ....+++|++|+++|++++++.+....+|..++ +.+.. ..+||+.|+
T Consensus 124 ~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~ 202 (476)
T PLN00028 124 ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF 202 (476)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence 9999999999999987654 456688999999999999999876655555554 43322 137999999
Q ss_pred HhHHHHHHHHhhhcccc-CChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhh
Q 015963 205 LGVLPCTLLIPGLFFIP-ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (397)
Q Consensus 205 ~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 283 (397)
+.+++.++..+..++++ +.|+. +.++. +++.+.++.+....+++.++++..+.
T Consensus 203 i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (476)
T PLN00028 203 VPGLLHIIMGILVLTLGQDLPDG-----NYREL---------------------KKSGTMPKDSFSKVLRYGVTNYRTWI 256 (476)
T ss_pred HHHHHHHHHHHHHHHHcCcCCCC-----chhhH---------------------HhcCccccccHHHHHHHHHcCchhHH
Confidence 98887776655444444 33320 00000 00000000011122344444443332
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchh
Q 015963 284 LMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR 346 (397)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~ 346 (397)
..+. ++........+..+.|.++.+ .|++... ......++++++++++.|+++||++||
T Consensus 257 ~~~~----~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 257 LALT----YGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHH----HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 2222 222222233455566766654 5887655 556677889999999999999999865
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-28 Score=219.72 Aligned_cols=258 Identities=18% Similarity=0.184 Sum_probs=190.8
Q ss_pred hhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 015963 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (397)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~ 127 (397)
.|.....+.++.+..........+.+|.+.+++|.++++.++..+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 34443444444343444444555678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHH
Q 015963 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (397)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f 203 (397)
+.++++++++++.+++.|+++|++.+...+...+++.|++|+|+|+++.++...+.++|..++|.+++.+ +||+.|
T Consensus 98 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f 177 (394)
T PRK10213 98 SCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVF 177 (394)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888765 899999
Q ss_pred HHhHHHHHHHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchh
Q 015963 204 VLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (397)
Q Consensus 204 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (397)
++.+++.++..+. ....||+|+. + ++.....++.++++..+
T Consensus 178 ~~~~~l~~~~~l~~~~~~p~~~~~---~-----------------------------------~~~~~~~~~~l~~~~~~ 219 (394)
T PRK10213 178 NAAAVMGVLCIFWIIKSLPSLPGE---P-----------------------------------SHQKQNTFRLLQRPGVM 219 (394)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCcc---c-----------------------------------ccchhHHHHHhcCHHHH
Confidence 9887766554433 2335664320 0 00001123344444333
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHh-HHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 015963 283 PLMIGIGLLVLQQLSGINGVLFY-SSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL 347 (397)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 347 (397)
...+...+.. ........+ .|.+.++.|+++.. ......+++.+++.++.+++.||.+++.
T Consensus 220 ~~~~~~~~~~----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~ 283 (394)
T PRK10213 220 AGMIAIFMSF----AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLA 283 (394)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 3322222222 122233334 46666667887655 5566677888999999999999954443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-28 Score=223.00 Aligned_cols=271 Identities=23% Similarity=0.303 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHH-HhhhHH-----HHHHHHHHHHHHHhhhcchhHHHHHHH
Q 015963 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIF-GSLANV-----GAMVGAIASGQIAEYIGRKGSLMIAAV 123 (397)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~-~s~~~~-----~~~~~~~~~g~l~dr~Grr~~~~~~~~ 123 (397)
.....++++.+.+++|...+++..|.+.+|++.++.+.+.+ .+...+ +..+++++.|+++||+|||+.++.+.+
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence 35677788899999999999999999999999888776544 333222 224689999999999999999999999
Q ss_pred HHHHHHHHHHhhcchh--------HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 015963 124 PNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (397)
Q Consensus 124 l~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 195 (397)
++++++++++++++++ .++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++.
T Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 46889999999999999988999999999999999999988877777666655543
Q ss_pred h------------hhhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Q 015963 196 F------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVAS 263 (397)
Q Consensus 196 ~------------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (397)
. .|||+.|++..+...+........||++++..++
T Consensus 175 ~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~--------------------------------- 221 (434)
T PRK15075 175 LLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK--------------------------------- 221 (434)
T ss_pred HHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh---------------------------------
Confidence 2 3899999886544322222222233332110000
Q ss_pred hcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHH
Q 015963 264 SSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLM 340 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~ 340 (397)
++.+.+..++...+++ +.........+......+.+..|.|.++++ .|.+..+ .......++++++.++.|+++
T Consensus 222 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 298 (434)
T PRK15075 222 HRPSMREIFRSLAANW---RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALS 298 (434)
T ss_pred hccccccHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011112222221 112222222222334456778889998876 5887655 455567788889999999999
Q ss_pred HHhchhHHHHHHHHHH
Q 015963 341 DKAGRRLLLLISSSGM 356 (397)
Q Consensus 341 d~~~~~~~~~~~~~~~ 356 (397)
||++||+.+..+....
T Consensus 299 Dr~g~r~~~~~~~~~~ 314 (434)
T PRK15075 299 DRIGRRPVLIAFTVLA 314 (434)
T ss_pred HHhcchHHHHHHHHHH
Confidence 9999999877665443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-29 Score=234.86 Aligned_cols=308 Identities=17% Similarity=0.210 Sum_probs=222.6
Q ss_pred HHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 015963 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (397)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~ 130 (397)
+...++++.+...++.+..++.+|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||+.++.+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34556667788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHh
Q 015963 131 IISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (397)
Q Consensus 131 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~ 206 (397)
+++.++|++.+++.|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..++|.+++.+ +||+.|++.
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999888766 899999998
Q ss_pred HHHHHHHHhh-hccccCChhHHHhcCCHHHHHHHH---------HH-HhCCCchhHHHHHHHH-----------HHHhhh
Q 015963 207 VLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSL---------QV-LRGFDTDISIEVNEIK-----------RSVASS 264 (397)
Q Consensus 207 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~-----------~~~~~~ 264 (397)
+++.++..+. .++.||+++. ++++.|...... .. .++...+...+..... ....+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWEL 240 (485)
T ss_pred hHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8776665443 4445664331 111222111000 00 0111100000000000 000011
Q ss_pred cchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHH
Q 015963 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d 341 (397)
+.+++....++++++..+...+...+..+ ......++.|.++++ .|.++.+ .......++.+++.++.+++.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~ 316 (485)
T TIGR00711 241 TDDNPLVDLRLFKYRNFTIGCVYMSLLGL----GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD 316 (485)
T ss_pred cCCCCccCHHHHcCCChHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111122345566554444333333222 234455667777765 5776655 5566678889999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHH
Q 015963 342 KAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
|++||+.+..+..+.+++...+.
T Consensus 317 r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 317 KIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHh
Confidence 99999998888877777776655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-27 Score=214.66 Aligned_cols=266 Identities=15% Similarity=0.087 Sum_probs=194.2
Q ss_pred HHHHHHhhhcccccCcccHHHHHH-hhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 015963 55 VALGPIQFGFTCGYSSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (397)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~ 133 (397)
..++.+..-......+|+.+.+.+ ++|+|.+|.+++.+++.+++.+..++.|++.||+|.|+++.++.++.++.++..+
T Consensus 39 s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~ 118 (462)
T PRK15034 39 SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLG 118 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 333334444566777888888766 8999999999999999999999999999999999999999999999999999999
Q ss_pred hh-----cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHH----HHHhhh---------
Q 015963 134 FS-----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML----AYLLGL--------- 195 (397)
Q Consensus 134 ~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~----~~~i~~--------- 195 (397)
++ ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+ +|.+..
T Consensus 119 ~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~ 197 (462)
T PRK15034 119 IAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGV 197 (462)
T ss_pred HHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 87 8999999999999998 6788999999999999999999999996555555544 443221
Q ss_pred ---------hhhhHHHHHHhHHHHHHHHhhhc-cccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhc
Q 015963 196 ---------FVNWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSS 265 (397)
Q Consensus 196 ---------~~~w~~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (397)
..+||...++..++.++..+..+ +.++.|+ +
T Consensus 198 ~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---------------------------------------~ 238 (462)
T PRK15034 198 NGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---------------------------------------S 238 (462)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------------------------c
Confidence 12478777777666655554433 3333321 0
Q ss_pred chhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh
Q 015963 266 RRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~ 343 (397)
+.......+.+|++..|. ..+.+++.+..+..+.++.|.+.++ .++... .......+...+.++++|+++||+
T Consensus 239 ~~~~~~~~~vlk~~~~Wl----lslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRi 313 (462)
T PRK15034 239 RASIADQLPVLQRLHLWL----LSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKF 313 (462)
T ss_pred ccCHHHHHHHhCCCchhH----HHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 111223344556554333 3344455555667777788888765 332222 223344677888899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 015963 344 GRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
|+++++.+++..+.++...+..
T Consensus 314 G~~~vl~~~~i~~~i~~~~~~l 335 (462)
T PRK15034 314 GGVRVTLINFIFMAIFSALLFL 335 (462)
T ss_pred CchHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777776654433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-28 Score=220.11 Aligned_cols=273 Identities=14% Similarity=0.137 Sum_probs=201.9
Q ss_pred hhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 015963 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (397)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~ 127 (397)
.|.+....+++.+... .....++..|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..++++
T Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~ 86 (393)
T PRK09705 8 NFMLLVLVLIGLNMRP-LLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV 86 (393)
T ss_pred HHHHHHHHHHHHHcch-hhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence 3444445555543333 336778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHH
Q 015963 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVL 202 (397)
Q Consensus 128 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~ 202 (397)
+.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++.+..+...|..+++.++..+ +||+.
T Consensus 87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999997 8899999999888777777777766543 79988
Q ss_pred HHHhHHHHHHHHhhhccc-cCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccch
Q 015963 203 AVLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (397)
Q Consensus 203 f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (397)
+.+.++..++.++.++.. ++.|+. + ++++ ...++.++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------~~~~----~~~~~~l~~~~~ 207 (393)
T PRK09705 166 LAWWALPAVVALFAWWWQSAREVAS--------S--------------------------HKTT----TTPVRVVFTPRA 207 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc--------c--------------------------cCCC----cCCcccccCHhH
Confidence 776655544443333222 222110 0 0000 001112222222
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 015963 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (397)
+.. .+..+.....+.....|.|.++++.|.+... ......+++.++++++.+++.||.+||+.+..+..+..++
T Consensus 208 ~~l----~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 208 WTL----GVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVG 283 (393)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 221 2222222334556777888888888887665 5667788899999999999999999999888887776666
Q ss_pred HHHHH
Q 015963 360 FFLVS 364 (397)
Q Consensus 360 ~~~~~ 364 (397)
.+++.
T Consensus 284 ~~~~~ 288 (393)
T PRK09705 284 FCGFI 288 (393)
T ss_pred HHHHH
Confidence 65443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-27 Score=217.93 Aligned_cols=287 Identities=16% Similarity=0.156 Sum_probs=216.0
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l 124 (397)
+++.++..+.+.+..+...+..+.+.|.+|.+.+++|.+.++.++..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 87 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAF 87 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 35667777778888888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhH
Q 015963 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWR 200 (397)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~ 200 (397)
.+++.+++.++++++.+++.|+++|++.+...+...+.+.|++|+++|.++.++......+|..++|.+++.+ +||
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~ 167 (406)
T PRK15402 88 FILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWR 167 (406)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999999988888999999999999999999988888888888888887654 899
Q ss_pred HHHHHhHHHHHHHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhcc
Q 015963 201 VLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKR 279 (397)
Q Consensus 201 ~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (397)
+.|++.++..++..+. ....||+++...++. +.++....++.+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 215 (406)
T PRK15402 168 GMFVLFAALAALSFFGLWRAMPETAGRVGEKL--------------------------------SLKELGRDYKLVLKNR 215 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccccccc--------------------------------cHHHHHHHHHHHHcCc
Confidence 9999887776665443 344676642100000 0000112334555555
Q ss_pred chhhHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 015963 280 YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM 356 (397)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~ 356 (397)
..+.......+... .......+.|.++. +.|.++.+ .......++.+++.++.+++.||+++|+.+..+..+.
T Consensus 216 ~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 291 (406)
T PRK15402 216 RFVAGALALGLVSL----PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM 291 (406)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 43333322222211 12233344555554 45776655 3334455677889999999999999999988888777
Q ss_pred HHHHHHHHHHH
Q 015963 357 AASFFLVSVAF 367 (397)
Q Consensus 357 ~~~~~~~~~~~ 367 (397)
.++.+++....
T Consensus 292 ~~g~~~~~~~~ 302 (406)
T PRK15402 292 VAGLLLAALAT 302 (406)
T ss_pred HHHHHHHHHHH
Confidence 77777666543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=219.41 Aligned_cols=264 Identities=15% Similarity=0.086 Sum_probs=196.0
Q ss_pred cccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015963 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (397)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r 145 (397)
....++..|.+.+++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhh-hccc
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFI 220 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~-~~~~ 220 (397)
++.|++.+..++.....+.|++| ++|+++.++...+.++|..+++.+...+ +||+.|++.++..++..+. ++++
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999888888888899987 6899999999999999987655444333 7999999988877666544 3445
Q ss_pred cCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhH
Q 015963 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (397)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (397)
+|+|+...++ + ++.++++...++.++++..+........... ...
T Consensus 178 ~~~~~~~~~~----------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 222 (377)
T TIGR00890 178 GYPPGQLIKT----------------N---------------IEVSVKDYTVWEMLRTPQFWVLYLSFFLNAV----SGL 222 (377)
T ss_pred ecCchhcccc----------------C---------------cccchhhhhHHHHHcCccHHHHHHHHHHHhH----HHH
Confidence 5543210000 0 0000011123445555444333322222211 122
Q ss_pred HHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
....+.+.+.++.+.++.. .......+..++++++.+++.||++||+.+..+..+..++.+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 289 (377)
T TIGR00890 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLF 289 (377)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 2333445556667776544 5566778888999999999999999999988887777777665443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=213.81 Aligned_cols=241 Identities=14% Similarity=0.105 Sum_probs=175.3
Q ss_pred ccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 015963 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRL 146 (397)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~ 146 (397)
..++|.+|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|++.+++.|+
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999998876655555454433334479999999999
Q ss_pred HHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh-hhcccc
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIP 221 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~-~~~~~~ 221 (397)
++|++.+. .+.....+.|++|+++|++++++.+.+..+|..++++++..+ +||+.|++.++++++..+ .++++|
T Consensus 88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999986 455566679999999999999999999999999998888776 999999997776665544 556789
Q ss_pred CChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHH
Q 015963 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (397)
Q Consensus 222 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (397)
|+|++..++ . + .+ +..+.++++++++..+.. ....++.....+.
T Consensus 167 ~~p~~~~~~----------------~-~----~~-----------~~~~~~~~ll~~~~~~~~----~~~~~~~~~~~~~ 210 (368)
T TIGR00903 167 ALPFQAAEG----------------F-G----FK-----------DAVKEFGALAGRKDLWII----GAILGFGVALFDN 210 (368)
T ss_pred CCCCCCCCC----------------c-c----hH-----------HHHHHHHHHHcChhHHHH----HHHHHHHHHHHHH
Confidence 987531000 0 0 00 001135567776554333 3334444455667
Q ss_pred HHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 015963 302 VLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRR 346 (397)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~ 346 (397)
+..|.|.++++.|++... .....+..+.+.+..++++||.+||
T Consensus 211 ~~~wlp~~L~~~g~s~~~--~~~~~l~~~~g~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 211 LAIWLEAALRPAGLEDIA--GDAVALAILAGLIGVAVIPDRVARA 253 (368)
T ss_pred HHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHHHHHhhHHhhhh
Confidence 788999999887776432 2223333344445567888887653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=215.47 Aligned_cols=272 Identities=13% Similarity=0.105 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 015963 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (397)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~ 129 (397)
.+...++++.+..+......++..|++.+++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 86 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44445566677777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHH
Q 015963 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAV 204 (397)
Q Consensus 130 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~ 204 (397)
++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++|.+.+.+ +||+.|.
T Consensus 87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~ 166 (394)
T PRK03699 87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYA 166 (394)
T ss_pred HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888888776543 8999999
Q ss_pred HhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhH
Q 015963 205 LGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284 (397)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (397)
+.+++.++..+..++ .+.|+. .++++ +++++.. ++ .+.+.
T Consensus 167 ~~~~~~~~~~~~~~~-~~~p~~-~~~~~-----------------------------~~~~~~~--------~~-~~~~~ 206 (394)
T PRK03699 167 CIGLVYVAIFILTLF-SEFPAL-GKHAP-----------------------------KADKPVA--------KE-KWGIG 206 (394)
T ss_pred HHHHHHHHHHHHHHh-cCCccc-cccCc-----------------------------cccCccc--------cc-cCChH
Confidence 877766655443332 222210 00000 0000000 00 01111
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 015963 285 MIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (397)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 361 (397)
++...+..+........+..|.|.++++ .|.+..+ .......++..+++++.++++||+++|+.+.....+..+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 286 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 2222222233333345667788888854 5887655 555566778899999999999999999888776655544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=216.08 Aligned_cols=269 Identities=16% Similarity=0.198 Sum_probs=202.5
Q ss_pred HHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 015963 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (397)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~ 133 (397)
...+..+..+.......+.+|.+++|+|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 7 SLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHH
Q 015963 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (397)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~ 209 (397)
+++|++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.+++.+ +||+.|++.++.
T Consensus 87 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~ 166 (382)
T PRK10091 87 LSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF 166 (382)
T ss_pred HhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence 9999999999999999999998888889999999999999999999999999999988887655 899999998876
Q ss_pred HHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHH
Q 015963 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (397)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (397)
.++..+ ...++||.++. .+. +.+..+ +.++++..+.....
T Consensus 167 ~~~~~~~~~~~lp~~~~~----~~~---------------------------------~~~~~~-~~~~~~~~~~~~~~- 207 (382)
T PRK10091 167 NIAVLASIYFWVPDIRDE----AKG---------------------------------GLREQF-HFLRSPAPWLIFAA- 207 (382)
T ss_pred HHHHHHHHHHhCCCCCcc----ccc---------------------------------CHHHHH-HHhcChHHHHHHHH-
Confidence 665544 34456775320 000 000001 12222222221111
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 289 GLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
.............+.+.++. ..|.++.. ......+++.++++++.+++.||+++|+.+..+..+.+++.+.+.
T Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~ 283 (382)
T PRK10091 208 ---TMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLF 283 (382)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHH
Confidence 11111122222334444444 46776655 556677888999999999999999999988888777766665443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=219.42 Aligned_cols=315 Identities=18% Similarity=0.179 Sum_probs=214.6
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
+.+.....++++.+.++++.....+..|.+.+++|.+.++.+++.+.+.+++.+++++.|+++||+|||+.+..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 44556667777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 015963 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (397)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (397)
++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+.+.+ +||+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888765 89999
Q ss_pred HHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHH---HHhhhcchhhhhH-------
Q 015963 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKR---SVASSSRRTAIRF------- 272 (397)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------- 272 (397)
|++.++..++.++....+||++++..++++.++..+..+.....+............ ............+
T Consensus 177 f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (496)
T PRK03893 177 FFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGL 256 (496)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Confidence 987655554444444556776654322211111111111000000000000000000 0000000000000
Q ss_pred ------HH--HHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHH
Q 015963 273 ------AE--LKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMD 341 (397)
Q Consensus 273 ------~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d 341 (397)
.. .......++.........+..+........+.|.+++ +.|.+..+ .......++.+++.++.++++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d 336 (496)
T PRK03893 257 LCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD 336 (496)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0001111122222222222222222234567788885 66887655 5666778889999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHH
Q 015963 342 KAGRRLLLLISSSGMAASFF 361 (397)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~ 361 (397)
|++||+.+..+..+..+..+
T Consensus 337 r~g~~~~~~~~~~~~~~~~~ 356 (496)
T PRK03893 337 WLGTRKAYVCSLLISQLLII 356 (496)
T ss_pred HhcchHHHHHHHHHHHHHHH
Confidence 99999988777655554443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-27 Score=213.92 Aligned_cols=277 Identities=17% Similarity=0.194 Sum_probs=200.3
Q ss_pred HHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 015963 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (397)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~ 130 (397)
......+..+...+....+.|.+|.+.++++.+.++.++..+++.+++.+++++.|+++||+|||++++.+.++++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 96 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA 96 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence 33344555566777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHh
Q 015963 131 IISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (397)
Q Consensus 131 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~ 206 (397)
++++++|++.++++|+++|++.+...+...+++.|++++++|++++++......+|..+||.+++.+ +||+.|++.
T Consensus 97 ~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 97 ATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999877777788899999999999999999999999999998888655 899999998
Q ss_pred HHHHHHHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHH
Q 015963 207 VLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (397)
Q Consensus 207 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (397)
++..++..+. ++.+||+++. +++. .........++++++++..+...
T Consensus 177 ~~~~~i~~~~~~~~lp~~~~~---~~~~-----------------------------~~~~~~~~~~~~ll~~~~~~~~~ 224 (413)
T PRK15403 177 AVMGLIAFVGLLLAMPETVKR---GAVP-----------------------------FSAKSVLRDFRNVFRNRLFLTGA 224 (413)
T ss_pred HHHHHHHHHHHHHhCCCCccc---cCCC-----------------------------CChHHHHHHHHHHHcCHHHHHHH
Confidence 8877766553 4457876431 0000 00001122345566665444433
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHhhc-CCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 015963 286 IGIGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (397)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (397)
+...+ ..........+.|.++++. |.++.. +.......+..++..+.+.+.++..+++.......+..++.++
T Consensus 225 l~~~~----~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l 300 (413)
T PRK15403 225 ATLSL----SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL 300 (413)
T ss_pred HHHHH----HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 33222 2223344555667777664 776665 4444455666677777776655444434433333333444433
Q ss_pred H
Q 015963 363 V 363 (397)
Q Consensus 363 ~ 363 (397)
+
T Consensus 301 ~ 301 (413)
T PRK15403 301 L 301 (413)
T ss_pred H
Confidence 3
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=213.54 Aligned_cols=270 Identities=19% Similarity=0.214 Sum_probs=207.6
Q ss_pred HhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchh
Q 015963 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS 139 (397)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~ 139 (397)
+........+.|..|.+.+++|.++++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.++++++++++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 44456777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh
Q 015963 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~ 215 (397)
.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+ +||+.+++.++..++..+
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888765 899999887776665544
Q ss_pred -hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHH
Q 015963 216 -GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (397)
Q Consensus 216 -~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (397)
..+..||+++... +. +.++....+++.++++..+...+...+..
T Consensus 175 ~~~~~~~~~~~~~~-~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 219 (385)
T TIGR00710 175 LIFFILPETLPYEA-RI--------------------------------QISTYFETFLLLLKSKMFWGYALIYGASF-- 219 (385)
T ss_pred HHHHhCCCCCCCcc-cC--------------------------------CHHHHHHHHHHHHcCchhHHHHHHHHHHH--
Confidence 3445666542100 00 00001122344555554444333322222
Q ss_pred HhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 015963 295 QLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (397)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (397)
........+.|.+++ +.|.++.. .......++.+++.++.+++.||+++|+.+..+..+..++.+++...
T Consensus 220 --~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (385)
T TIGR00710 220 --GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEIT 292 (385)
T ss_pred --HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344455566655 46776655 55556778889999999999999999998888877777766655543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=197.26 Aligned_cols=318 Identities=17% Similarity=0.177 Sum_probs=239.6
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l 124 (397)
.+.+|........+...+.+......-+.|.+.+..|.+..+.+++......|..+++..+|.++|++|||+.+.+..+.
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~ 152 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLV 152 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHH
Confidence 34556666666666655555555555667778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhh----hhhH
Q 015963 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----VNWR 200 (397)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~----~~w~ 200 (397)
.++..++.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-+. ..+.+|.+....+... +|||
T Consensus 153 t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr 230 (528)
T KOG0253|consen 153 TGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWR 230 (528)
T ss_pred HHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999 888899999999999998776666 8888888888776643 3999
Q ss_pred HHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCch----------h--HHHHHH--HHHHHhhhcc
Q 015963 201 VLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTD----------I--SIEVNE--IKRSVASSSR 266 (397)
Q Consensus 201 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~--~~~~~~~~~~ 266 (397)
|.......+..+.....+++||+||++..+++.+++.+.++++...|.. . ++|.++ .++...+..+
T Consensus 231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~k 310 (528)
T KOG0253|consen 231 YLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAK 310 (528)
T ss_pred HHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcccc
Confidence 9998888888888888889999999999999999999999999776632 0 111111 1111111223
Q ss_pred hhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhc---CCC-----------------chh--HHHHH
Q 015963 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA---GIS-----------------SSN--VATFG 324 (397)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~-----------------~~~--~~~~~ 324 (397)
+......+++..+.++..+.....++...+. ++......+.+++.. +.. ... .-..+
T Consensus 311 e~rg~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdlli 389 (528)
T KOG0253|consen 311 EVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLI 389 (528)
T ss_pred ccccchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHH
Confidence 3345567777776666666555555544443 344444444444321 111 111 23456
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 325 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 325 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
..+..+.|.++.++++||+|||+.+...++++++..+.+..
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~ 430 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT 430 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999988888776665543
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=217.04 Aligned_cols=276 Identities=14% Similarity=0.112 Sum_probs=206.8
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l 124 (397)
....+....++++.+++...+...+....+.+++.+|++++..|++.+.+.+++.+++|++|+++||+.||+++.+|..+
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i 107 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI 107 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence 34556677788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hh
Q 015963 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NW 199 (397)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w 199 (397)
+.++.+.+++++.+|+++++|.+.|+|.+...++.+++++|.+|..+|++++++++.+..+|..+|.+.+..+ .|
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~W 187 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWW 187 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888666 49
Q ss_pred HHHHHHhHHHHHHHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhc
Q 015963 200 RVLAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278 (397)
Q Consensus 200 ~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (397)
||.|+..++++++..++ .++++|+++- ..++.. +++ ..........++.+.+.+.
T Consensus 188 r~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~-------~~~------------~~~~~~ts~~kDl~~l~~~ 243 (493)
T KOG1330|consen 188 RWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVD-------GEN------------KMVKPFTSVWKDLKVLAKI 243 (493)
T ss_pred EEEEEeehHHHHHHHHHHHhhccCcccc-----cccccc-------cCC------------cCCCCccchHHHHHHHHcc
Confidence 99999999988877654 5556666431 000000 000 0000111122233344443
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhc
Q 015963 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAG 344 (397)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~ 344 (397)
+......+.+....+...+.-+.-+.+.+...+-.|.+... ....+...++.+|.+.+|.++||+.
T Consensus 244 ~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~ 311 (493)
T KOG1330|consen 244 KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLS 311 (493)
T ss_pred CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHH
Confidence 44444344444444433222222233333333333443333 5566677888899999999999953
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=220.29 Aligned_cols=297 Identities=19% Similarity=0.189 Sum_probs=220.6
Q ss_pred ccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 015963 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (397)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 144 (397)
.....++..+ .+.+..+.....+..+++.+|..+|++++|+++||+|||++++.+.++..++.++.++++|++.+++.
T Consensus 100 ~~~~~s~~~~--~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~ 177 (521)
T KOG0255|consen 100 GSSVYSIVSE--WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIF 177 (521)
T ss_pred CCCcccccch--hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3344444433 35566778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHhHHHHHHHHhhhccccC
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPE 222 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~f~~~~~~~~~~~~~~~~~~e 222 (397)
|+++|++.++.......++.|++++++|+.+..+ ......+..+++..++++ +||+.+++..++.++.++.+++.||
T Consensus 178 Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~E 256 (521)
T KOG0255|consen 178 RFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPE 256 (521)
T ss_pred HHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999 556556666666666555 8999999999999888777777789
Q ss_pred ChhHHHhcCCHHHHHHHHHHHhCCC---chhHHHHHHH--HHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhh
Q 015963 223 SPRWLAKMGMTEDFESSLQVLRGFD---TDISIEVNEI--KRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (397)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 297 (397)
+|+|+..+++.+++.+.++++.+.| .+.....+.. .+..+....+++..+.++++.+..+...+...+.++..
T Consensus 257 s~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~-- 334 (521)
T KOG0255|consen 257 SPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF-- 334 (521)
T ss_pred ChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999988886543 1211111111 11111122223345777777764444444444444322
Q ss_pred hhHHHHHhHHHH-HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 015963 298 GINGVLFYSSNI-FANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (397)
Q Consensus 298 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (397)
...++.-.+ ....|. +........+.....+....+...|+.|||.....+..+..++++..++.....
T Consensus 335 ---~~~y~gl~~~~~~lg~-~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (521)
T KOG0255|consen 335 ---SLVYYGLSLNVSGLGG-NIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDL 404 (521)
T ss_pred ---hHHHHhhhhhhhhcCc-hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 222222221 122233 222444455557788888889999999999999999999999998888765443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=211.51 Aligned_cols=279 Identities=12% Similarity=0.113 Sum_probs=200.4
Q ss_pred hhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 015963 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (397)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~ 127 (397)
.+..+..+.+..+..++......+..|.+++++|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34444555566677788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhh--------
Q 015963 128 GWLII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------- 196 (397)
Q Consensus 128 ~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-------- 196 (397)
+++++ ..+++++.++++|+++|+|.|...+....++.|+.++++|...+++.+..+.+|..+++.++..
T Consensus 104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~ 183 (438)
T PRK10133 104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99886 4688999999999999999999999999999998777777777889999999998888877531
Q ss_pred ----------------------hhhHHHHHHhH-HHHHHHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHH
Q 015963 197 ----------------------VNWRVLAVLGV-LPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISI 252 (397)
Q Consensus 197 ----------------------~~w~~~f~~~~-~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (397)
.+||+.|+... +..++.++. ....||.+.. +.
T Consensus 184 ~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~--------------------- 239 (438)
T PRK10133 184 QSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH--------------------- 239 (438)
T ss_pred cchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---cc---------------------
Confidence 14666665433 333232222 2234442210 00
Q ss_pred HHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHH-h-hcCCCchh--HHHHHHHHH
Q 015963 253 EVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF-A-NAGISSSN--VATFGLGVV 328 (397)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~~~--~~~~~~~~~ 328 (397)
.++++.+.....+++++++..+...+..++... .......|.+.++ + ..|.++.. .......++
T Consensus 240 --------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~ 307 (438)
T PRK10133 240 --------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVC 307 (438)
T ss_pred --------ccccccchhhhHHHHHhCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Confidence 000000111234556666655544333322222 2233344555553 4 35777665 666778889
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 015963 329 QVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (397)
Q Consensus 329 ~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (397)
.++|+++++++.||+++|+++..+..+..+++++
T Consensus 308 ~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 308 FFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888876666555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=215.15 Aligned_cols=280 Identities=23% Similarity=0.315 Sum_probs=204.6
Q ss_pred HHHHhhhcccccCcccHH-HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 015963 57 LGPIQFGFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (397)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~ 135 (397)
++.+...+......+..| .+.+++|.+.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 444555666777788888 8999999999999999999999999999999999999999999999999999997777777
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHH
Q 015963 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (397)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~ 211 (397)
++.+.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+ +||+.|++.+++.+
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 88889999999999999999999999999999999999999999999999999999999876 79999999988887
Q ss_pred HHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhh-hHHHHHhccchhhHHHHHH
Q 015963 212 LLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI-RFAELKRKRYWFPLMIGIG 289 (397)
Q Consensus 212 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~ 289 (397)
+..++ ..+++++++...++.+.++. ++++++.. .++.+++++..+...+...
T Consensus 163 ~~~il~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (352)
T PF07690_consen 163 IAAILFILFLPEPPPPRERESPKESE--------------------------SKKPKPLKPGFKSLFKNPVLWILLIAFF 216 (352)
T ss_dssp HHHHHHHCCC---STTTT--SSTTTT----------------------------HHHCCCH-CTHHHHHHCCHHHHHHHH
T ss_pred hhhhhHhhhhhhcccccccccccccc--------------------------cccccccccccccccccchhhhhhhhhh
Confidence 77553 34445443211110000000 00001111 2455555555442222222
Q ss_pred HHHHHHhhhhHHHHHhHHHH-HhhcCCC-chh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 290 LLVLQQLSGINGVLFYSSNI-FANAGIS-SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
... ........+.|.+ .++.|.+ ... .......+..+++.++.+++.||+++|+..........++.+.+.+
T Consensus 217 ~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (352)
T PF07690_consen 217 LFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLL 292 (352)
T ss_dssp HHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 222 2234466677776 4455776 344 4466778888888999999999999887777766666666555544
Q ss_pred H
Q 015963 366 A 366 (397)
Q Consensus 366 ~ 366 (397)
.
T Consensus 293 ~ 293 (352)
T PF07690_consen 293 L 293 (352)
T ss_dssp S
T ss_pred H
Confidence 3
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-26 Score=209.47 Aligned_cols=261 Identities=18% Similarity=0.167 Sum_probs=196.5
Q ss_pred hcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHH
Q 015963 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (397)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~ 142 (397)
.+..+.+.|..|.+++++|.++++.+++.+++.+++.+++++.|+++||+|||+.+..+.++..++.++++++++++.++
T Consensus 19 ~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (401)
T PRK11043 19 FLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLL 98 (401)
T ss_pred HHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhc
Q 015963 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (397)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~ 218 (397)
+.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+ +||+.|++.++..++..+..+
T Consensus 99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888999999999899888888888888888888877655 899999988877776655555
Q ss_pred cccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015963 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (397)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 298 (397)
+++|+++. + + +++++.+++++++++..+...+...... ..
T Consensus 179 ~~~~~~~~---~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 218 (401)
T PRK11043 179 RLKPSKKA---R-K--------------------------------QSQDALTFKQLLKSKTYLGNVLIFAACS----AA 218 (401)
T ss_pred HcCCCCCc---c-c--------------------------------cchHHHHHHHHHcChhHHHHHHHHHHHH----HH
Confidence 55554320 0 0 0001123445555544333222222111 12
Q ss_pred hHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 015963 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (397)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (397)
......+.|.++++.|.++.. .......++.+++.+..+++.||+++|+..........++.+.+
T Consensus 219 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~ 285 (401)
T PRK11043 219 FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAI 285 (401)
T ss_pred HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 233445677777777887665 44445567778899999999999999887666655555554433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=215.31 Aligned_cols=270 Identities=17% Similarity=0.123 Sum_probs=199.1
Q ss_pred hhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhH
Q 015963 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF 140 (397)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~ 140 (397)
...++...++...|.+.+++|.+.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS 84 (399)
T ss_pred HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH
Confidence 34456677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhh
Q 015963 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~ 216 (397)
++++|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+ +||+.|++.++..++..+.
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888765 8999999888776665443
Q ss_pred -hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHH
Q 015963 217 -LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (397)
Q Consensus 217 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 295 (397)
.++.||+|+.... .+.++.....+... .+...+++++......++.++++..+.. .+..+..
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 227 (399)
T TIGR00893 165 WLKFIPDPPQKAKW-LTEEEKYIVVGGLL------------AEQQGKGPSTPKKYQIKELLKDRRVWGL----ALGQFLV 227 (399)
T ss_pred hhheecCCCCcccc-CCHHHHhhcchhhc------------cccccccccCCCccchHHHhcCHHHHHH----HHHHHHH
Confidence 4445665431110 01111000000000 0000011111222344555555433332 2223333
Q ss_pred hhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 015963 296 LSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL 347 (397)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 347 (397)
.........+.|.++++ .+.++.. .......+..+++.++.+++.||++||+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33445566677777754 4665544 5566778888999999999999999986
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=210.24 Aligned_cols=277 Identities=10% Similarity=0.040 Sum_probs=203.4
Q ss_pred HHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 015963 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (397)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~ 136 (397)
.+.+...+..+...+.+|.+..+++.+..+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVA 85 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666777888999999999999999999999999999999999999999999999999999999998888887
Q ss_pred -----chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhH
Q 015963 137 -----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (397)
Q Consensus 137 -----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~ 207 (397)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.+
T Consensus 86 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 165 (365)
T TIGR00900 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDA 165 (365)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888765 8999998887
Q ss_pred HHHHHHHhhhccc--cCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHH
Q 015963 208 LPCTLLIPGLFFI--PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (397)
Q Consensus 208 ~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (397)
+..++..+..+.+ ||+++. ++.+.+ ++ ..++....++.+++++..+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------~~-------~~~~~~~~~~~~~~~~~~~~~~ 216 (365)
T TIGR00900 166 VGFAISALLIVSVRIPELAAS--EIQALS--------------------NA-------VLRDTREGIKFVLKNPLLRTLL 216 (365)
T ss_pred HHHHHHHHHHHhcccccCCCc--cccccc--------------------hh-------HHHHHHhHHHHHHcCcHHHHHH
Confidence 7665554433333 332210 000000 00 0001112344555555544433
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 015963 286 IGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (397)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (397)
....+..... ......+.|.+.++ .+.++.+ .......++.+++.++.+++.||.+||+.+..+..+.++++..
T Consensus 217 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (365)
T TIGR00900 217 LLALLFNLVF---APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV 293 (365)
T ss_pred HHHHHHHHHH---HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 3332222221 11222556666665 5776555 5556677888899999999999999999888776666666554
Q ss_pred HHH
Q 015963 363 VSV 365 (397)
Q Consensus 363 ~~~ 365 (397)
+..
T Consensus 294 ~~~ 296 (365)
T TIGR00900 294 VGL 296 (365)
T ss_pred HHh
Confidence 443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-34 Score=267.27 Aligned_cols=308 Identities=38% Similarity=0.590 Sum_probs=242.4
Q ss_pred HHHHHHhhhcccccCcccHHHHH--HhhcCC---------chhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 015963 55 VALGPIQFGFTCGYSSPTQAEII--SDLKLT---------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (397)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~s---------~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 123 (397)
..++.+..+++....+...+... .++..+ +.+.+++.+...+|..+|+++.|+++||+|||+.+.++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 34455777888877777665544 222222 2346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc---chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---
Q 015963 124 PNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--- 197 (397)
Q Consensus 124 l~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--- 197 (397)
+..++.++.++++ +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|..++..++...
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999998888776433
Q ss_pred -h---hHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHH
Q 015963 198 -N---WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFA 273 (397)
Q Consensus 198 -~---w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (397)
+ ||+.+++.+++.++.++..+++||+|+|+.++++.||+++.++++++.+.+.++. ++..++.++. ++.+..++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 242 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEI-EEIKAEKKES-QESKASWR 242 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccc-cccccccccc-cccceeee
Confidence 4 9999999999988888878889999999999999999999988866553222111 1111111111 11114566
Q ss_pred HHHhccc-hhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 015963 274 ELKRKRY-WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (397)
Q Consensus 274 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~ 352 (397)
++++++. +++......+....+..+.+...+|.+.++++.+.++.........+...++.+++.+++||+|||++++.+
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~ 322 (451)
T PF00083_consen 243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIG 322 (451)
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7776644 455566666666666777777888888888888877664445566677778888888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 015963 353 SSGMAASFFLVS 364 (397)
Q Consensus 353 ~~~~~~~~~~~~ 364 (397)
..++.++.+.++
T Consensus 323 ~~~~~~~~~~~~ 334 (451)
T PF00083_consen 323 LLLMAICSLILG 334 (451)
T ss_pred cccccccccccc
Confidence 888888887775
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=211.20 Aligned_cols=266 Identities=17% Similarity=0.187 Sum_probs=189.2
Q ss_pred HHHHHHhhhcccccCcccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 015963 55 VALGPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (397)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~ 133 (397)
..+..+...++.++..|.+|. +++++|.|+.+.|++.+++.+++.+++++.|+++||+||||+++.+.++.+++.+.++
T Consensus 20 l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (399)
T PRK05122 20 IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH
Confidence 344445555666777788886 6789999999999999999999999999999999999999999999998888777665
Q ss_pred hh---c-----chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHH
Q 015963 134 FS---K-----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (397)
Q Consensus 134 ~~---~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~ 201 (397)
++ + +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+ +||+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 179 (399)
T PRK05122 100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAG 179 (399)
T ss_pred HhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHH
Confidence 43 2 4667899999999999999999999999999999999999999888888888888887655 8999
Q ss_pred HHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccch
Q 015963 202 LAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (397)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (397)
.+++.++..++..+.....|++++. ++ ++.++++.+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------------~~~~~~~~~~~~-- 218 (399)
T PRK05122 180 LGLLIMLLALLGLLLARPRPAVPPV---KG------------------------------------ERLPFRRVLGRV-- 218 (399)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC---Cc------------------------------------cchhHHHHHHHH--
Confidence 8887766655444333323332110 00 000111111110
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 015963 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 361 (397)
+.......+.. ........+.+.++.+.+.+..........++.+++.++.+++.||+++|+.+..+..+..++.+
T Consensus 219 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 294 (399)
T PRK05122 219 WPYGMGLALAS----IGFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLL 294 (399)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 01111111111 11233445566666666664444555667788889999999999999999988888777776665
Q ss_pred HHHH
Q 015963 362 LVSV 365 (397)
Q Consensus 362 ~~~~ 365 (397)
.+..
T Consensus 295 ~~~~ 298 (399)
T PRK05122 295 LLWL 298 (399)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=216.66 Aligned_cols=279 Identities=13% Similarity=0.107 Sum_probs=208.8
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHH----------------------hhcCCchhhHHHHhhhHHHHHHHH
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIIS----------------------DLKLTISEFSIFGSLANVGAMVGA 102 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~s~~~~~~~~s~~~~~~~~~~ 102 (397)
.+.++.+..+++++......++...+...+.+.+ |++++..+.|++.+++.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 3456667777777777778888888887777766 789999999999999999999999
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHH
Q 015963 103 IASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180 (397)
Q Consensus 103 ~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 180 (397)
++.|+++||+|||+++..+.++.+++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999887554 568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHhhhc-cccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHH
Q 015963 181 LSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 254 (397)
Q Consensus 181 ~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (397)
.+..+|..+++.+++.+ +||+.|++.+++.++..+.++ +.+|+|+...+ .+.++.
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~------------------ 234 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC-ISKFEK------------------ 234 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC-CCHHHH------------------
Confidence 99999999998887654 899999998888776655544 45666642111 111110
Q ss_pred HHHHHHHhh--hcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHH
Q 015963 255 NEIKRSVAS--SSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQ 329 (397)
Q Consensus 255 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~ 329 (397)
+..++..++ ++.+.+..++++++++..+ ...+..+......+.+..|.|.++++ .|.+... .......++.
T Consensus 235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~ 310 (465)
T TIGR00894 235 KYINSSLQGQKGSTRQSLPIKAIPKSLPVW----AIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFA 310 (465)
T ss_pred HHHHhhcccccCCCCCCCCHHHHhcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHH
Confidence 000000000 0111223466666664433 33344444445566777888988865 5776655 5555678888
Q ss_pred HHHHHHHHHHHHHhchh
Q 015963 330 VVATGVNTWLMDKAGRR 346 (397)
Q Consensus 330 ~~~~~~~~~l~d~~~~~ 346 (397)
+++.++.|+++||+++|
T Consensus 311 ~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 311 WLCSIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998643
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=211.65 Aligned_cols=283 Identities=18% Similarity=0.136 Sum_probs=192.4
Q ss_pred HHHHHhhhcccccCcccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 015963 56 ALGPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (397)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~ 134 (397)
+++.+..........+..|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+..+.++..++.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 7 WFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 33334444555667888895 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hc-chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhh----hh----------hhh
Q 015963 135 SK-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG----LF----------VNW 199 (397)
Q Consensus 135 ~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~----~~----------~~w 199 (397)
++ +++.+++.|+++|++.+. .+...+++.|++|+++|+++.++......+|..+++.++ .. .+|
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w 165 (366)
T TIGR00886 87 AVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW 165 (366)
T ss_pred HhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99 999999999999998654 566788999999999999999998866666655554443 32 269
Q ss_pred HHHHH-HhHHHHH-HHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHh
Q 015963 200 RVLAV-LGVLPCT-LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKR 277 (397)
Q Consensus 200 ~~~f~-~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (397)
|+.|+ ..++... ..++...+.+|+|+...+ .++.. ..... +..+++.....++.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~--------------~~~~~~~~~~~~~~~~ 223 (366)
T TIGR00886 166 GWAFVIVPAGILLLPALLIFFVGADTPPGKPA---TGKLS-----FKGAR--------------WSVGTGALGDQLKVFR 223 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccCCccccc---chhcc-----ccccc--------------ccccchhHHHHHHHHh
Confidence 99984 4344433 333444555666531100 00000 00000 0000001113344555
Q ss_pred ccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 015963 278 KRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSS 354 (397)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~ 354 (397)
++..+...+..... .........+.+.++++ .|.++.+ .......+..++++++.+++.||+++|+.+..+..
T Consensus 224 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~ 299 (366)
T TIGR00886 224 DRHTWILALLYSVT----FGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFL 299 (366)
T ss_pred ccchhhHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHH
Confidence 55443333332222 22234455666777754 4776655 45556677888999999999999999888777766
Q ss_pred HHHHHHHHHHH
Q 015963 355 GMAASFFLVSV 365 (397)
Q Consensus 355 ~~~~~~~~~~~ 365 (397)
....+..++..
T Consensus 300 ~~~~~~~~~~~ 310 (366)
T TIGR00886 300 GVAMGAFLVVL 310 (366)
T ss_pred HHHHHHHHHHh
Confidence 66555554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-26 Score=207.55 Aligned_cols=266 Identities=20% Similarity=0.190 Sum_probs=197.8
Q ss_pred hcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHH
Q 015963 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (397)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~ 142 (397)
......+.+.+|.+.+++|.+.++.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.+++..+++++.++
T Consensus 16 ~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~ 95 (392)
T PRK10473 16 PAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFL 95 (392)
T ss_pred HHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 34445556889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh-hh
Q 015963 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GL 217 (397)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~-~~ 217 (397)
+.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.++..++..+ ..
T Consensus 96 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 96 AGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888887654 899999988776665544 34
Q ss_pred ccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhh
Q 015963 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (397)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 297 (397)
..+||+++.. +++ +....+..++.++++..+.......+....
T Consensus 176 ~~~~~~~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 218 (392)
T PRK10473 176 FILKETRPAR--APA--------------------------------ASSKPRENSESLLNRFFLSRLVITTLSVTV--- 218 (392)
T ss_pred HHcCCCCCcc--cCC--------------------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHH---
Confidence 5567653210 000 000001112233333322222222111111
Q ss_pred hhHHHHHhHHHHH-hhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 015963 298 GINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (397)
Q Consensus 298 ~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (397)
......+.|.++ ++.|.++.. ......++..+++.++.+++.||++||+.+..+..+..++.+.+...
T Consensus 219 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 219 -ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred -HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233344444 345776655 45556788888999999999999999999888887777776665543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-26 Score=212.16 Aligned_cols=280 Identities=13% Similarity=0.108 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 015963 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (397)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~ 127 (397)
.|.+....++.......+....+...|.+.++ |++.++.+++.+++.+++.+++++.|+++||+|||++++.+.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i 105 (452)
T PRK11273 27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 105 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHH
Confidence 34444444455555555655566778888888 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc----chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHH-HHHHhhhh----hh
Q 015963 128 GWLIISFSK----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-LAYLLGLF----VN 198 (397)
Q Consensus 128 ~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~----~~ 198 (397)
+.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+..+|.. .+++++.. .+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g 185 (452)
T PRK11273 106 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND 185 (452)
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 999888763 6778899999999999988888888899999999999999999999988864 45554322 28
Q ss_pred hHHHHHHhHHHHHHH-HhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhh-HHHHH
Q 015963 199 WRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIR-FAELK 276 (397)
Q Consensus 199 w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 276 (397)
||+.|++.+++.++. ++..+++||+|+....+ +.++..+ +.+ +..+..++++.+.+.. .+.++
T Consensus 186 w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~ 250 (452)
T PRK11273 186 WHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN------DYP--------DDYNEKHEQELTAKQIFMQYVL 250 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh------ccc--------cccccccCCCccHHHHHHHHHH
Confidence 999999887766654 44556678877532111 1111000 000 0000000000000111 12234
Q ss_pred hccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh--chhH
Q 015963 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRL 347 (397)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~--~~~~ 347 (397)
+++..+...+. .+......+....|.|.++++ .|++... .......++.+++.++.|+++||+ +||.
T Consensus 251 ~~~~~~~~~l~----~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~ 322 (452)
T PRK11273 251 PNKLLWYIAIA----NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 322 (452)
T ss_pred cChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 44433332222 222222345567788888876 4776544 455567788889999999999999 4444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=206.01 Aligned_cols=275 Identities=12% Similarity=0.118 Sum_probs=202.9
Q ss_pred HHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 015963 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (397)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~ 131 (397)
...++...+..|+..+..+|.+|.+++++|.+..+.|++.+.+.+++.+++++.|++.||+|||+.+..+.++.+++.++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 34555666778888888899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh---hcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----------
Q 015963 132 ISF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------- 197 (397)
Q Consensus 132 ~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----------- 197 (397)
+.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..++|.++..+
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 654 468999999999999999999999999999999999999999999999999999998876533
Q ss_pred -------------------hhHHHHHHhHHHHHHHHhhhcc--ccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHH
Q 015963 198 -------------------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNE 256 (397)
Q Consensus 198 -------------------~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (397)
+||++|++.+++.++..+...+ .||.++ + +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~--~---------------------- 215 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S--D---------------------- 215 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c--c----------------------
Confidence 4999998887766655443322 333210 0 0
Q ss_pred HHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcC--CCchh--HHHHHHHHHHHHH
Q 015963 257 IKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG--ISSSN--VATFGLGVVQVVA 332 (397)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~--~~~~~~~~~~~~~ 332 (397)
+++.+...+.+++++++..+...+..+++...+ .....|.+.+.++.+ .+... ...........+|
T Consensus 216 ------~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e----~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vG 285 (410)
T TIGR00885 216 ------AKQISFSASLSRLARIRHYREGVIAQFFYVGVQ----IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFIS 285 (410)
T ss_pred ------cccccchhhHHHHHhChhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 000011112334555555444444433333332 334456666665543 22221 2333445667899
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 333 TGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 333 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
+++++++.||+++|+.+.++.....+++++...
T Consensus 286 R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~ 318 (410)
T TIGR00885 286 RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF 318 (410)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887776666666555443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=205.26 Aligned_cols=262 Identities=19% Similarity=0.209 Sum_probs=197.6
Q ss_pred ccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 015963 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (397)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 144 (397)
..+++.|..|.+.+++|+|+++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh-hhcc
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~-~~~~ 219 (397)
|++.|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+ +||+.|++.++..++..+ ..++
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999888665 899999988777665543 4455
Q ss_pred ccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhh
Q 015963 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (397)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 299 (397)
+||+++... +. + .+.++...++++.++++..+...+. ....+...
T Consensus 166 ~~~~~~~~~-~~---------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 210 (377)
T PRK11102 166 IPETLPKER-RQ---------------P---------------FHLRTTIRNFASLFRHKRVLGYMLA----SGFSFAGM 210 (377)
T ss_pred CCccCcccc-cC---------------C---------------CChHHHHHHHHHHHcChHHHHHHHH----HHHHHHHH
Confidence 676542100 00 0 0000011223444554433322222 22222223
Q ss_pred HHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 015963 300 NGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (397)
Q Consensus 300 ~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 361 (397)
.....+.|.++. +.|.++.+ .......+..+++.++.+++.||+++|+.+..+..+..+..+
T Consensus 211 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~ 275 (377)
T PRK11102 211 FSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGI 275 (377)
T ss_pred HHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 333444454444 45776655 556667788889999999999999999988887766544433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=211.26 Aligned_cols=305 Identities=16% Similarity=0.163 Sum_probs=213.4
Q ss_pred HHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 015963 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (397)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~ 132 (397)
..++++.+...++.+..++..|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 92 (471)
T PRK10504 13 WIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFC 92 (471)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 34445566677788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHH
Q 015963 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (397)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~ 208 (397)
+++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++......+|..++|.+++.+ +||+.|++...
T Consensus 93 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~ 172 (471)
T PRK10504 93 ALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIP 172 (471)
T ss_pred HHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888765 89999998877
Q ss_pred HHHHHHhh-hccccCChhHHHhcCCHHHHHHHHH---------HHhCCCchhHHH--HHHH---------H-HHHhhhcc
Q 015963 209 PCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQ---------VLRGFDTDISIE--VNEI---------K-RSVASSSR 266 (397)
Q Consensus 209 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~--~~~~---------~-~~~~~~~~ 266 (397)
...+..+. ....|+.+. ++.+.|....... ...+.+...... .... . ...+++..
T Consensus 173 ~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (471)
T PRK10504 173 VGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNN 249 (471)
T ss_pred HHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66555443 333454332 1111111111000 001110000000 0000 0 00011111
Q ss_pred hhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh
Q 015963 267 RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (397)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~ 343 (397)
++..+. ++++++.+.......++... .......+.|.+++. .|.++.. .......++.+++.++.+++.||+
T Consensus 250 ~~~~~~-~l~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 324 (471)
T PRK10504 250 RALFSL-KLFRTRTFSLGLAGSFAGRI----GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF 324 (471)
T ss_pred CCccCH-HHhcccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 112222 46666655444333333222 234445566777664 5776555 455566677778889999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 015963 344 GRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
++|+.+..+..+..++..++..
T Consensus 325 g~~~~~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 325 GYRRVLVATTLGLALVSLLFML 346 (471)
T ss_pred CchHHHHHHHHHHHHHHHHHHh
Confidence 9999998887777776655543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=206.40 Aligned_cols=260 Identities=18% Similarity=0.191 Sum_probs=183.1
Q ss_pred HhhhcccccCcccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---h-
Q 015963 60 IQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F- 134 (397)
Q Consensus 60 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~- 134 (397)
+......+...|.+|. +++++|.|.++.|++.+++.+++.+++++.|+++||+||||+++.+.++..++.+... .
T Consensus 25 ~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 104 (392)
T PRK12382 25 FLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAIL 104 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3334456677788885 6789999999999999999999999999999999999999999999888777654332 2
Q ss_pred ----hcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHh
Q 015963 135 ----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (397)
Q Consensus 135 ----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~ 206 (397)
.++++.+++.|+++|++.+...+...+++.|++|+|+|++++++.+.+...|..++|.+++.+ +||+.+.+.
T Consensus 105 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 105 PVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 357888999999999999999998899999999999999999999999999998988887655 899877765
Q ss_pred HHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHH
Q 015963 207 VLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMI 286 (397)
Q Consensus 207 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (397)
.+..++........||.++. + +++ .+.++..+. .+....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~---~--------------------------------~~~----~~~~~~~~~-~~~~~~- 223 (392)
T PRK12382 185 MVLPLLAWAFNGTVRKVPAH---A--------------------------------GER----PSLWSVVGL-IWKPGL- 223 (392)
T ss_pred HHHHHHHHHHHHhccCCCCC---c--------------------------------ccC----chHHHHHHH-HHHhHH-
Confidence 55443333222222332110 0 000 001111110 000111
Q ss_pred HHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 287 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
...+ ..........+.+.++++.+.+.........+++.+++++..+++.||+++|+.+..+..+..++.+++.
T Consensus 224 ~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 297 (392)
T PRK12382 224 GLAL----QGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW 297 (392)
T ss_pred HHHH----HHHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH
Confidence 1111 1112334455666677776765544555566777888999999999999999988888777777665544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=202.09 Aligned_cols=266 Identities=16% Similarity=0.117 Sum_probs=195.6
Q ss_pred HHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 015963 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (397)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~ 133 (397)
.+.++.+..+...+..++.+|.+.+++|.|.++.|++.+.+.+++.+++++.|+++||+|||+.+..+.++.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 10 LLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh---hHHHHHHhHHHH
Q 015963 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN---WRVLAVLGVLPC 210 (397)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~---w~~~f~~~~~~~ 210 (397)
+++|++.++++|+++|++.+...+...+.+.+..++++|+++++.++.+..+|..+|+.+++.+. ++...+..+...
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 169 (381)
T PRK03633 90 LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVL 169 (381)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 99999999999999999999998888888888899999999999999999999999999998761 222223222222
Q ss_pred HHHHhhhc-cccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHH
Q 015963 211 TLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (397)
Q Consensus 211 ~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (397)
...+...+ ..+++++ + + ++..+.++.++++..+.......
T Consensus 170 ~~~~~~~~~~~~~~~~------------------------------------~--~-~~~~~~~~~~~~~~~~~~~~~~~ 210 (381)
T PRK03633 170 AAILPLLFTRILNQQA------------------------------------E--N-HDSTSIWPMLKLRQARLGVNGCI 210 (381)
T ss_pred HHHHHHHHhcccCCCC------------------------------------C--C-CCCCCHHHHHHhcchHHHHHHHH
Confidence 11111111 1121100 0 0 00112334455554333222111
Q ss_pred HHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 015963 290 LLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (397)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (397)
... ........+.|.+.++.|.++.. .......+..+++++..+++.||+++|+.+..+.....++.+.
T Consensus 211 ~~~----~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 281 (381)
T PRK03633 211 ISG----IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA 281 (381)
T ss_pred HHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 111 11233445678888777876655 4555667888899999999999999999888777776665543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=212.86 Aligned_cols=269 Identities=14% Similarity=0.109 Sum_probs=194.6
Q ss_pred HHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcch
Q 015963 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138 (397)
Q Consensus 59 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~ 138 (397)
++...++...+++..|.+.+++|.+.++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL 83 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence 44555677888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHH-Hhhhhh----hhHHHHHHhHHHHHHH
Q 015963 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY-LLGLFV----NWRVLAVLGVLPCTLL 213 (397)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~i~~~~----~w~~~f~~~~~~~~~~ 213 (397)
+.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .++..+ +||+.|++.+++.++.
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
T TIGR00881 84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV 163 (379)
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 344333 8999998887766554
Q ss_pred -HhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHH
Q 015963 214 -IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (397)
Q Consensus 214 -~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 292 (397)
++..++.||+|+....+...++. +++. ++.++..+++.+..+...+++++++..+...+...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 227 (379)
T TIGR00881 164 SLICFLLLRDSPQSCGLPPAEEMP----------NEEP----DGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF-- 227 (379)
T ss_pred HHHHheeeCCCccccccCccccCc----------cccc----ccccccccccccchHHHHHHHHhcchHHHHHHHHHH--
Confidence 44455667765421110000000 0000 000000001111122234555555544433332222
Q ss_pred HHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhch
Q 015963 293 LQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (397)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~ 345 (397)
..........+.|.++++ .|.++.+ .......++.+++.++.+++.||..+
T Consensus 228 --~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 281 (379)
T TIGR00881 228 --VYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFN 281 (379)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcC
Confidence 222334556667777654 5776555 55667788889999999999998643
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-26 Score=206.31 Aligned_cols=290 Identities=17% Similarity=0.164 Sum_probs=214.9
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcc-cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSP-TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~ 125 (397)
..+.++..++..++....+...++- .+..+.+|.+...++.+.+.++++++++++.+++|.+.||++-.+.+....+.+
T Consensus 42 ~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w 121 (495)
T KOG2533|consen 42 LDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW 121 (495)
T ss_pred HHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence 3445555555566655555544332 333456889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--------
Q 015963 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------- 197 (397)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-------- 197 (397)
++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|+..++++.+..++|.++|.+++..+
T Consensus 122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 999988888999999999999999999999999999999999999999999999999999999999988662
Q ss_pred --hhHHHHHHhHHHHHHH-HhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHh--hhcchhhhhH
Q 015963 198 --NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA--SSSRRTAIRF 272 (397)
Q Consensus 198 --~w~~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 272 (397)
||||.|++.+++.++. +++.+++|+.|..- +-.+.+|..-.. ++.++... .+++.+...+
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~-~fl~~~ek~~~~--------------~~~~~~~~~~~~~~~~~~~~ 266 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA-WFLTDEEKELVV--------------ERLRESPSGGIENKFKWKGF 266 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecCChhhc-cccchHHHHHHH--------------HHHHhccCCCcccccCHHHH
Confidence 8999999998877766 45677789998621 000111100000 01110000 0111344566
Q ss_pred HHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHH----hch
Q 015963 273 AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDK----AGR 345 (397)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~----~~~ 345 (397)
++.++.+..+... +..++.....+.+.+|+|.++.+ .|++..+ ....+..++++++.+++|+++|| ..+
T Consensus 267 ~~a~~dp~vw~~~----l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~ 342 (495)
T KOG2533|consen 267 KEALKDPGVWPFS----LCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFAR 342 (495)
T ss_pred HHHHhchhHHHHH----HHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHH
Confidence 6677776554444 44444444567788999999988 4566555 67778899999999999999999 445
Q ss_pred hHHHHHHHHH
Q 015963 346 RLLLLISSSG 355 (397)
Q Consensus 346 ~~~~~~~~~~ 355 (397)
|........+
T Consensus 343 ~~~~~~~~~~ 352 (495)
T KOG2533|consen 343 RLLFIVFLCL 352 (495)
T ss_pred HHHHHHHHHH
Confidence 5554444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=205.97 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=193.2
Q ss_pred hHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015963 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~ 128 (397)
+.......+.......+...+....|.+++ +|.++++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 444445555555666666666677787776 5999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh----cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhh-----hhh
Q 015963 129 WLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNW 199 (397)
Q Consensus 129 ~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~w 199 (397)
.++.+.. ++++.+.+.|++.|++.|...+.....+.|++|+++|++++++.+.+..+|..+++.+.+. .+|
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 9887764 4667788899999999999989889999999999999999999999999998888765543 289
Q ss_pred HHHHHHhHHHHHHHH-hhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhc
Q 015963 200 RVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278 (397)
Q Consensus 200 ~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (397)
|+.|++.++..++.. +.++++||+|+....+ +.++. +.+..+ +. .++.+.+.+.++...+.++++
T Consensus 185 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~ 250 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEY-------RNDYPD---DY---NEKAEQELTAKEIFMQYVLPN 250 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhc-------cccccc---cc---ccccccccchHHHHHHHHccC
Confidence 999999888766654 4556678876531100 00000 000000 00 000000000011111234455
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchh
Q 015963 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR 346 (397)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~ 346 (397)
+..+....... ......+....|.|.++++ .|.++.. .......+.++++.++.++++||++++
T Consensus 251 ~~~~~~~~~~~----~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 251 KLLWYIAIANV----FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred chHHHHHHHHH----HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 44443333222 2223345566788888876 4776654 556677788999999999999999643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=202.15 Aligned_cols=263 Identities=14% Similarity=0.058 Sum_probs=183.4
Q ss_pred HHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc
Q 015963 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (397)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~ 136 (397)
++.+...+.........+.+.++++.+..+.+++.+.+.+++.+.+++.|+++||+|||++++.+.++.+++++.+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~ 89 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI 89 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444556667889999999999999999999999999999999999999999999999999998887776
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHH
Q 015963 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLL 213 (397)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~~~~~~ 213 (397)
+. ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|..+||.+++.+ .|+..+.+.+...++.
T Consensus 90 ~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 90 HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA 166 (393)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 77899999999999999999999999999999999999999999999999999887 4555555555444444
Q ss_pred HhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHH
Q 015963 214 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (397)
Q Consensus 214 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 293 (397)
.+....+||+|+...+++. ++ .+ ...+ ....++.+++++..+.......+...
T Consensus 167 ~~~~~~l~~~~~~~~~~~~-~~-~~--------------~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~ 219 (393)
T PRK11195 167 ALFNLFIPRLGARRPGQSW-NP-IA--------------LLRD-----------FFHACRVLWRDKLGRFSLAGTTLFWG 219 (393)
T ss_pred HHHHhcCCCCcccccccCC-CH-HH--------------HHHH-----------HHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 4455667876532110000 00 00 0000 01112445555554443333222222
Q ss_pred HHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 015963 294 QQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISS 353 (397)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~ 353 (397)
... ...+..+.+.++ .|.++.+ ......+++.+++++..+++.||.++++.+..+.
T Consensus 220 ~~~----~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 220 AGA----TLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred HHH----HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 221 222223333332 3666655 5666778888999999999999988887776664
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-24 Score=197.95 Aligned_cols=245 Identities=15% Similarity=0.160 Sum_probs=180.7
Q ss_pred hhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHH
Q 015963 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (397)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l 141 (397)
..+..+.+.|.+|.+.+++|.++.+.+++.+++.+++.+++++.|+++||+|||+.+..+.++..++.+++.++++++.+
T Consensus 20 ~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (394)
T PRK11652 20 GQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVL 99 (394)
T ss_pred HHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 33566677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHH-hh
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PG 216 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~-~~ 216 (397)
++.|++.|++.+...+....+..|.+++++|+++.+..+.+..+|..++|.+++.+ +||+.|++.++..++.. +.
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK11652 100 IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSM 179 (394)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888999999999999999999999999998888887665 89999998877655443 34
Q ss_pred hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHh
Q 015963 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (397)
Q Consensus 217 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (397)
.++.||+++... ++.+....+++.++++..+..........
T Consensus 180 ~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 220 (394)
T PRK11652 180 ARWMPETRPADA-----------------------------------RRTRVLASYRTLLSNRRFNCYLLMLIGTL---- 220 (394)
T ss_pred HHhCCccCcccc-----------------------------------chhHHHHHHHHHHcChHHHHHHHHHHHHH----
Confidence 455677643100 00001123344455444433332222111
Q ss_pred hhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhch
Q 015963 297 SGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (397)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~ 345 (397)
........+.+.++++ .|.++.. .......++.+++.++.+++.||.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 272 (394)
T PRK11652 221 AGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 272 (394)
T ss_pred HHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333344455555 5776555 33444556666777777888887773
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=199.53 Aligned_cols=247 Identities=15% Similarity=0.050 Sum_probs=175.0
Q ss_pred cccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---h-hcchhHHHHHH
Q 015963 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F-SKDSSFLFMGR 145 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~-~~~~~~l~~~r 145 (397)
.+.++.+.+++|.++++.+++.+.+.+++.+++++.|+++||+||||++..+.++.+++++++. . .++++.+++.|
T Consensus 33 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (402)
T TIGR00897 33 QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY 112 (402)
T ss_pred HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence 3455667788999999999999999999999999999999999999999999999999877653 3 35788888999
Q ss_pred HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHH-HHHHHhhhhh----hhHHHHHHhHHHHHHHHh-hhcc
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI-MLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~i~~~~----~w~~~f~~~~~~~~~~~~-~~~~ 219 (397)
++.|++.+...+...+.+.+++|+++|++++|+.+.+.++|. .++|.+++.+ ||+..++.......+..+ ..++
T Consensus 113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 192 (402)
T TIGR00897 113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFS 192 (402)
T ss_pred HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988888888889999999999999999999999996 5788877654 766554443332222222 2333
Q ss_pred ccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhh
Q 015963 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (397)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 299 (397)
.+|.++...++ + + ++.++.+..++.+++++..+...+. .+......
T Consensus 193 ~~~~~~~~~~~-~--------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 238 (402)
T TIGR00897 193 NKDIFTPQHMQ-T--------------R---------------EKFSELGKAATILFTNPNVLLGGMV----RIINTIGL 238 (402)
T ss_pred cCCCCCccccc-C--------------C---------------cchhhHHHHHHHHHcChhHHHHHHH----HHHHHHHH
Confidence 44432100000 0 0 0000011224455555544332222 22333345
Q ss_pred HHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 015963 300 NGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (397)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 350 (397)
.....|.|.+.++.|.+..+ .......++.+++.+..|+++||++||+.+.
T Consensus 239 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 239 FGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 56677888888888887665 4445667889999999999999999887654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=192.51 Aligned_cols=263 Identities=17% Similarity=0.224 Sum_probs=207.2
Q ss_pred cccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchh---H
Q 015963 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---F 140 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~---~ 140 (397)
+...+.+++-+.+.+++|+|++|.+++.++..+..++..++.|.+.||+|.|++..++.++..+.++..+++.+.+ +
T Consensus 28 ~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ 107 (417)
T COG2223 28 MVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ 107 (417)
T ss_pred HHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence 4556667888889999999999999999999999999999999999999999999999999999999999986555 9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHH----HHHHhhhhhh---hHHHHHHhHHHHHHH
Q 015963 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM----LAYLLGLFVN---WRVLAVLGVLPCTLL 213 (397)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~----~~~~i~~~~~---w~~~f~~~~~~~~~~ 213 (397)
+++++++.|++. ..+......+++++|++++|.++|++. ..++|.. ++|.+....+ ||....+..+..++.
T Consensus 108 ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 108 LLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA 185 (417)
T ss_pred HHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999966 677788999999999999999999987 5566544 5566666667 998888877766665
Q ss_pred H-hhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhh-hhHHHHHhccchhhHHHHHHHH
Q 015963 214 I-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTA-IRFAELKRKRYWFPLMIGIGLL 291 (397)
Q Consensus 214 ~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 291 (397)
. ..++...|.|....+ .++.. ...+.+++++. .+...+.
T Consensus 186 ~v~~~~~~~d~p~~r~~-----------------------------------~~~~~~~~~~~v~~~~~----~W~lsll 226 (417)
T COG2223 186 AVLAWLGMNDVPEHRAS-----------------------------------VKPQLPAQLKAVFSNKD----TWLLSLL 226 (417)
T ss_pred HHHHHHHhCCChhhhcc-----------------------------------ccccchhHHHHHhcCcc----hHHHHHH
Confidence 4 455556666542100 01111 23444554444 3445555
Q ss_pred HHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 015963 292 VLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (397)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (397)
++..+..+..+..+.|.++++ +|.++.. .......+.+.+.++++|+++||+|.++.+...+..++++...+.+..
T Consensus 227 Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~ 305 (417)
T COG2223 227 YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL 305 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence 666777788889999988875 6777666 666677788889999999999999999999998888888887777654
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=195.87 Aligned_cols=259 Identities=17% Similarity=0.182 Sum_probs=190.3
Q ss_pred ccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 015963 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (397)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 144 (397)
.....+|.+|.+++++|.+.++.+++.+++.+++.+++++.|+++||+|||+++..+.++..++.+.+ .+++.+.+++.
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 93 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG 93 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999988888877 77899999999
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhHHHHHHHHhhhc
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLF 218 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~f~~~~~~~~~~~~~~~ 218 (397)
|++.|++.+...+.....+.|+++ ++|++++++.+.+..+|..+++.++..+ +||+.|.+.++..++... .
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~ 170 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--A 170 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--H
Confidence 999999999988888888999886 6899999999999999988888776554 399888776654433322 2
Q ss_pred cccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015963 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (397)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 298 (397)
++|+.++. +. ++++..+...++.++++..+...+. .+.....
T Consensus 171 ~~~~~~~~---~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 212 (355)
T TIGR00896 171 WIPQVRRR---VA-------------------------------ANQTTTRLTPVRIWRSPLAWQVTVF----FGLQSGL 212 (355)
T ss_pred Hhhhhccc---cC-------------------------------CCCCCCCCCCchhhcCHhHHHHHHH----HHHHHHH
Confidence 23433210 00 0000001122344444433332222 2222223
Q ss_pred hHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHH
Q 015963 299 INGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
+.....|.|.++++.|.+... .......++.++++++.+++.||+ +||+.+..+..+.+++.+.+.+
T Consensus 213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~ 282 (355)
T TIGR00896 213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF 282 (355)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888886655 566677889999999999999999 4566666666666666554443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=201.98 Aligned_cols=246 Identities=15% Similarity=0.190 Sum_probs=198.7
Q ss_pred HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhhhh
Q 015963 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (397)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 154 (397)
+.+++++.++.+++.+.++.|+.+++++.|++.||+|-|+++..+.++.++++++...+. +++.+++.|++||++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999998874 556778999999999999
Q ss_pred hhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHhhhcc-ccCChhHHH
Q 015963 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFF-IPESPRWLA 228 (397)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~~~~~-~~e~~~~~~ 228 (397)
.+|+...+..+|.|++||++..++...+..+|.+++.++++.+ ||++.|++.++.+++..+++++ ..|+|.. .
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-h 223 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-H 223 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-C
Confidence 9999999999999999999999999999999999888777765 8999999999999888776654 4666652 1
Q ss_pred hcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcch--hhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhH
Q 015963 229 KMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRR--TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306 (397)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (397)
+. -.++|.+.+++...+++.+ .+.+++++++++. ++...+..+..+.+...+..|.
T Consensus 224 ~~------------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 224 PN------------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred CC------------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1112222222222222222 4678999998854 4555556666777788899999
Q ss_pred HHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhch
Q 015963 307 SNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (397)
Q Consensus 307 ~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~ 345 (397)
|.|+++ .+++... +..++..+...+..+++|.++||+.+
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999986 4665444 77778889999999999999999855
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=217.64 Aligned_cols=299 Identities=17% Similarity=0.173 Sum_probs=209.2
Q ss_pred HHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 015963 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (397)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~ 132 (397)
+..++..+......+..++.++.++++|+++..+.|++.+.+.++++++.++.|++.||+||||.+.++.++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33444556666777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc---------------------------------------------------chhHHHHHHHHHHHhhhhhhhhhhh
Q 015963 133 SFSK---------------------------------------------------DSSFLFMGRLLEGFGVGVISYTVPV 161 (397)
Q Consensus 133 ~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (397)
++.+ .+..++++|+++|+|.+..++...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 8763 2456778999999999999999999
Q ss_pred hhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHhHHHHHHHHh
Q 015963 162 YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 162 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------------------~w~~~f~~~~~~~~~~~~ 215 (397)
++.|++|+++|++++++.+.+..+|..+|+++++.+ +|+..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887543 167778888777776655
Q ss_pred hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHH
Q 015963 216 GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (397)
Q Consensus 216 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 295 (397)
.++++|++.+...++.+.++..+. ...... + .. .........+....++.+++++.++.. .+..+..
T Consensus 276 ~l~~~p~~lp~~~~~~~~~~~~~~--~~~~~~-~--~~----~~~~~~~~~~~~~~~~~Ll~n~~f~~~----~l~~~~~ 342 (633)
T TIGR00805 276 PFFFFPKALPKEGKRVNVDVHETE--KLEKSE-D--KS----RKKNSDITKDFPKIIKRLLCNPIYMLV----ILAQVID 342 (633)
T ss_pred HHHhCccccCCcccccchhhhhhh--cccccc-c--cc----chhhhhhHHHHHHHHHHHHcCcHHHHH----HHHHHHH
Confidence 555666542210000000000000 000000 0 00 000000011122345667776544333 3333334
Q ss_pred hhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHH-HHHHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHHH
Q 015963 296 LSGINGVLFYSSNIFAN-AGISSSN--VATFGLGV-VQVVATGVNTWLMDKAG--RRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~-~~~~~~~~~~~l~d~~~--~~~~~~~~~~~~~~~~~~~~ 364 (397)
......+..|.|.++++ .|.++.. .......+ +.+++.+++|+++||++ .|+.+..+..+..++.+...
T Consensus 343 ~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 417 (633)
T TIGR00805 343 SLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCS 417 (633)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHHHH
Confidence 44556777788888874 6877665 33333343 56789999999999998 46777777777766655433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=197.72 Aligned_cols=264 Identities=22% Similarity=0.289 Sum_probs=185.0
Q ss_pred hhhcccccCcccHHHHHHhhc--CCchhhHHHHhh-----hHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 015963 61 QFGFTCGYSSPTQAEIISDLK--LTISEFSIFGSL-----ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (397)
Q Consensus 61 ~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~ 133 (397)
.+.++...+++..+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 445666666777777777754 445556554443 3333456899999999999999999999999999999999
Q ss_pred hhcchh--------HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhh---------
Q 015963 134 FSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF--------- 196 (397)
Q Consensus 134 ~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~--------- 196 (397)
++++++ .+++.|+++|++.+...+...+++.|++++++|++..+..+.+..+|..+++.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~ 163 (394)
T TIGR00883 84 LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDA 163 (394)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999875 478889999999999999999999999999999999999999999999998876532
Q ss_pred ---hhhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHH
Q 015963 197 ---VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFA 273 (397)
Q Consensus 197 ---~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (397)
.+||+.|++.++..++........||++++..++ +++++.+.+.+
T Consensus 164 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~ 211 (394)
T TIGR00883 164 LLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ--------------------------------EKHKKKRGPIR 211 (394)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH--------------------------------hccccccCCHH
Confidence 3799999888776666555555567765421100 00011122334
Q ss_pred HHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 015963 274 ELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLL 350 (397)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~ 350 (397)
+.++++.. ..... ....+...........+.|.+++ +.|.++.. .......+...++.++.+++.||++||+.+.
T Consensus 212 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 212 ETLTKHRK-PFLLG-LGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred HHHHhchH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 44444321 12222 22222333334556667777774 45776555 4555677888899999999999999999776
Q ss_pred HHHHHHHH
Q 015963 351 ISSSGMAA 358 (397)
Q Consensus 351 ~~~~~~~~ 358 (397)
....+..+
T Consensus 290 ~~~~~~~~ 297 (394)
T TIGR00883 290 IFTVLAAL 297 (394)
T ss_pred HHHHHHHH
Confidence 55444433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-27 Score=203.35 Aligned_cols=342 Identities=17% Similarity=0.173 Sum_probs=242.4
Q ss_pred CCcchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhh-c-------CCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 015963 43 DGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-K-------LTISEFSIFGSLANVGAMVGAIASGQIAEYIGR 114 (397)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr 114 (397)
..+|+....+.+...+.+.++++...++.+.|.+...+ + .++...+.+..+..+|.++||++.|++.||+||
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44677888888999999999999999999988776654 2 345567899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc-------hhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHH
Q 015963 115 KGSLMIAAVPNIIGWLIISFSKD-------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI 187 (397)
Q Consensus 115 r~~~~~~~~l~~~~~~~~~~~~~-------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 187 (397)
|+++...+++..+++++++++.. .+++...|++.|+|.|+-+|...+..+|....++||...+...+..+.|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 99999999999999998887521 35677889999999999999999999999999999998887766666666
Q ss_pred HHHHHhhhhh-------------------hhHHHHHHhHHHHHHHHhhhccccCChhHHHhc-CCHHHHHHHHHHHhCCC
Q 015963 188 MLAYLLGLFV-------------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKM-GMTEDFESSLQVLRGFD 247 (397)
Q Consensus 188 ~~~~~i~~~~-------------------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~ 247 (397)
..|.+++-.+ -||..+.+.+++++..+...+.+||++++.... ++.+.+.+ ...+..
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~---d~~k~~ 270 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAG---DMKKVL 270 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhh---cccccc
Confidence 6665554322 399999999999999888888999999875222 22222221 111110
Q ss_pred chhHHHHHHHHHHHhhhcchhh---hhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--H--
Q 015963 248 TDISIEVNEIKRSVASSSRRTA---IRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--V-- 320 (397)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~-- 320 (397)
.. +.++.+. .+.....++ ..+...+..+ .-+.++.....++..-..++....+...++++.|+.+.. .
T Consensus 271 ~~---~~~~~~~-~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~ 345 (538)
T KOG0252|consen 271 SV---DIEAEST-AESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHE 345 (538)
T ss_pred cc---ccchhhc-cccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHH
Confidence 00 0000000 011111111 1233333333 234556667777777677788888899999877775544 1
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhh
Q 015963 321 -------ATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEVGHANRVLCQKILAFIAYWGYC 392 (397)
Q Consensus 321 -------~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 392 (397)
...+.....+.|..+...++|++|||+..+.+++++.+..+.++.......+.....++..+..|+.-+|+.
T Consensus 346 ~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn 424 (538)
T KOG0252|consen 346 LFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN 424 (538)
T ss_pred HHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC
Confidence 112222333346667778999999999999999999999998887765433444444555556666666654
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=196.53 Aligned_cols=263 Identities=13% Similarity=0.156 Sum_probs=183.2
Q ss_pred HHHhhhcccccCcccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHhh
Q 015963 58 GPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISFS 135 (397)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~l~~~~~~~~~~~ 135 (397)
.++..++..+...|.+|. +++++|.|.++.|++.+++.+...+.+++.|+++||+||||.++ .+..+..++.++++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 84 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN 84 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc
Confidence 345566677777888886 57889999999999999999999999999999999999988765 4566667788888999
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhH--HHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHH
Q 015963 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL--GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (397)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~ 209 (397)
++++.+++.|++.|.+.+...|...++..|+.++++|++. .+....+.++|..++|.+++.+ +||+.|++.++.
T Consensus 85 ~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 85 RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999988888888888888998887777654 5677777788888888777655 899999998887
Q ss_pred HHHHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHH
Q 015963 210 CTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (397)
Q Consensus 210 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (397)
.++..+. ++++||+|+...++. +..+.++.++++..+......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T TIGR00899 165 FVLCGVLVWLFLPSYPRGAPGAL------------------------------------TRLEVRGLLASRDTRLLFVAC 208 (375)
T ss_pred HHHHHHHHHHhCCCcccCccccc------------------------------------CcchhhhhhcCcchHHHHHHH
Confidence 6665443 455788654210000 000111233333333322222
Q ss_pred HHHHHHHhhhhHHHHHhHHHHH-hhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 015963 289 GLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (397)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (397)
.+.... ......+.|.++ ++.|.++.. ..........+++.++.+++.||++||+.+..+.....+..
T Consensus 209 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~ 279 (375)
T TIGR00899 209 TLMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFY 279 (375)
T ss_pred HHHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 222221 122333445554 345776655 33334445667788899999999999998877665544433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-24 Score=195.33 Aligned_cols=270 Identities=16% Similarity=0.093 Sum_probs=187.3
Q ss_pred HHHHHhhhcccccCcccHHHHHHhhcCCchh-----hHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 015963 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISE-----FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (397)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~ 130 (397)
+++.+..++..+...+.+|.+.+++|.+..+ .+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 99 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV 99 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence 4445556667777889999999999988655 48899999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHh
Q 015963 131 IISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (397)
Q Consensus 131 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~ 206 (397)
++..+++++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..++|.+++.+ +||+.|++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999999999999999865 5677788899999999999999999999999999998888765 899999988
Q ss_pred HHHHHHHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHH
Q 015963 207 VLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (397)
Q Consensus 207 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (397)
++..++..+. .+++||+++...+ ++ . .+.....+.++++......
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~----~~------------------~------------~~~~~~~~~~~~~~~~~~~ 224 (408)
T PRK09874 179 ASVLFLCFLVTLFCIRENFQPVSK----KE------------------M------------LHMREVVTSLKNPKLVLSL 224 (408)
T ss_pred HHHHHHHHHHHHHHhccCcccccc----hh------------------h------------hHHHHHHHhCcCCchHHHH
Confidence 8776655443 3445654321000 00 0 0000011122222222211
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh------HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 015963 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN------VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (397)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (397)
....+.. .........+.+.+..+.+.+... ......+++.+++.+..+++.||++||+.+..+.....++
T Consensus 225 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 301 (408)
T PRK09874 225 FVTTLII---QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLL 301 (408)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 1111111 111222333444444443222221 2233456677788889999999999999988877666555
Q ss_pred HHHH
Q 015963 360 FFLV 363 (397)
Q Consensus 360 ~~~~ 363 (397)
.+.+
T Consensus 302 ~~~~ 305 (408)
T PRK09874 302 LIPM 305 (408)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=201.04 Aligned_cols=264 Identities=15% Similarity=0.149 Sum_probs=193.4
Q ss_pred cccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh-----hcch
Q 015963 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDS 138 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~-----~~~~ 138 (397)
+......+.+|.+.++++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+. .+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T PRK10489 31 FGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSL 110 (417)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcH
Confidence 34455567888899999999999999999999999999999999999999999999998888877765542 5678
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHH
Q 015963 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (397)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~ 214 (397)
+.+++.|++.|++.+...+...+++.|+.|+++|+++.++.+....+|..+||.+++.+ +|++.|++.++..++..
T Consensus 111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~ 190 (417)
T PRK10489 111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL 190 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88999999999999888898899999999999999999999999999999999988765 89999998877766666
Q ss_pred hhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHH
Q 015963 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (397)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (397)
+..+.+|++++...+++ +..++....++..++++..+...+...+...
T Consensus 191 ~~~~~l~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (417)
T PRK10489 191 LPLLRLPALPPPPQPRE-------------------------------HPLRSLLAGFRFLLASPVVGGIALLGGLLTM- 238 (417)
T ss_pred HHHHhCCCCCCCCcccc-------------------------------cchHHHHHHHHHHHcChHHHHHHHHHHHHHH-
Confidence 65666776543100000 0000011123334444433333322221111
Q ss_pred HhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 015963 295 QLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (397)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (397)
......+.|.+.++ .|.++.. ......+++.+++.++.+++.||.++++.+..+..+..++.+.+
T Consensus 239 ----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 306 (417)
T PRK10489 239 ----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLF 306 (417)
T ss_pred ----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHH
Confidence 23345567777776 6776554 55566778889999999999999777777777766666555444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=199.27 Aligned_cols=279 Identities=11% Similarity=0.062 Sum_probs=186.8
Q ss_pred hhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 015963 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (397)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~ 127 (397)
.|.++..+.+...........++...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 96 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASL 96 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHH
Confidence 45454444444443333445567789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHH-HHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 015963 128 GWLIISFSKDSSFLFM-GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (397)
Q Consensus 128 ~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (397)
++++++++++++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+++.+ |||+.
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~ 175 (455)
T TIGR00892 97 GMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS 175 (455)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence 9999999999998875 4799999998877777788899986 8999999999999999998888877655 89999
Q ss_pred HHHhHHHHHHHHhhhccc-cCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccch
Q 015963 203 AVLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (397)
Q Consensus 203 f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (397)
|++.+++.++..+..+++ ++.+.. ++.+.++. ......+ . .+ +.+.. ...++..+....++++++.+
T Consensus 176 f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~----~~~~~~~-~--~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 243 (455)
T TIGR00892 176 FLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKSK----EGLPPDG-S--TK--KLSKK-STAEKINRFLDFSLFTHRGF 243 (455)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccc--cccccccc----ccCCCCC-c--cc--ccccc-chhhhhhhhcchHHhcCchH
Confidence 999888766554443333 322210 00000000 0000000 0 00 00000 00000000111134555444
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh
Q 015963 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~ 343 (397)
+...... +...........+.+.+.++.|.+... ......+++.++++++.+++.||.
T Consensus 244 ~~~~~~~----~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 244 LVYLSGN----VIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred HHHHHHH----HHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3332222 222222344456677777777887655 555667888889999999999973
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=189.74 Aligned_cols=250 Identities=26% Similarity=0.399 Sum_probs=207.9
Q ss_pred HHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 015963 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (397)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~ 134 (397)
+.+..+...++.....+..|.+.+++|.+.++.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 34455666778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHH
Q 015963 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (397)
Q Consensus 135 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~ 210 (397)
+++++.+++.|++.|++.+...+...+++.|++|+|+|++.+++.+....+|..+++.+++.+ +||+.+++.++..
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988776 7999999888777
Q ss_pred HHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHH
Q 015963 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (397)
Q Consensus 211 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 290 (397)
++..+...+++ +..+...+
T Consensus 164 ~~~~~~~~~~~-------------------------------------------------------------~~~~~~~~ 182 (352)
T cd06174 164 LLLALLLLFLL-------------------------------------------------------------RLLLLLAL 182 (352)
T ss_pred HHHHHHHHHHH-------------------------------------------------------------HHHHHHHH
Confidence 66655443322 11222223
Q ss_pred HHHHHhhhhHHHHHhHHHHHhhc-CCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHHHHH
Q 015963 291 LVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRL-LLLISSSGMAASFFLVSV 365 (397)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~-~~~~~~~~~~~~~~~~~~ 365 (397)
..+...........+.+.+.++. +.++.+ .......++..++.++.+++.||++||+ .+..+..+..++.+.+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333444556667777777765 666555 6667778899999999999999999999 888888888777776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=188.11 Aligned_cols=266 Identities=14% Similarity=0.123 Sum_probs=187.5
Q ss_pred cccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh-----cchhH-HHHHHHHHHHHHHHHHhh---c
Q 015963 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKGS-LMIAAVPNIIGWLIISFS---K 136 (397)
Q Consensus 66 ~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~l~~~~~~~~~~~---~ 136 (397)
....++..|.+.+|+|+|.+++++..+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....++. .
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3456678899999999999999999755 455554 99999999998 89987 467788888887777777 4
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h--------hHHHHH
Q 015963 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N--------WRVLAV 204 (397)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~--------w~~~f~ 204 (397)
+.+.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+ + ||..|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 5566777788889888889999999999999999999999999999999999999888654 6 999999
Q ss_pred HhHHHHHHHHhhhc-cccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhh
Q 015963 205 LGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (397)
Q Consensus 205 ~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 283 (397)
+.++..++..+..+ ..||+++. ++.+ + + ++++....++++++++..++
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~--~~~~-~--------------------~--------~~~~~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQED--ASVP-K--------------------P--------LTQAVLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc--cccc-h--------------------h--------HHHHHHHHHHHHHHhcCchH
Confidence 98887766655444 34664220 0000 0 0 00011223455566554223
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhH--HHHHHH-HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 015963 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNV--ATFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMAASF 360 (397)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~-~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~ 360 (397)
.......... ..........+.+.+.++.|+++.+. .....+ +..+++.++++++.||+|+|+.+..+..+.+++.
T Consensus 211 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~ 289 (356)
T TIGR00901 211 ALLLLLLIVL-YKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTN 289 (356)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3222222222 22234455566777777778877663 333333 5677899999999999999998888877777665
Q ss_pred HHHHH
Q 015963 361 FLVSV 365 (397)
Q Consensus 361 ~~~~~ 365 (397)
.++.+
T Consensus 290 ~~~~~ 294 (356)
T TIGR00901 290 AGFVW 294 (356)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-24 Score=193.58 Aligned_cols=266 Identities=12% Similarity=0.082 Sum_probs=186.9
Q ss_pred hcccccCcccHH-HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHH
Q 015963 63 GFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (397)
Q Consensus 63 ~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l 141 (397)
....+...|.+| .+++++|.+..+.|++.+++.+++.+++++.|+++||+|||++++.+.++.+++.++.+++++++.+
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLV 99 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344445556555 4667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHHHhh-h
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG-L 217 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~~~~~~~~~-~ 217 (397)
++.|.+.|.+.+...+...++..|..|+++|++++++.....++|..++|.+++.+ +|+..|++.++..++.++. .
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 100 VLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 99999999888888888999999999999999999999999999999999998876 8999999887776665443 3
Q ss_pred ccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhh
Q 015963 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (397)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 297 (397)
+++||+++. + + ++ +++..+.++.++++..+.......+..+....
T Consensus 180 ~~~~~~~~~---~-~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (395)
T PRK10054 180 IWVQRSEKA---I-A-TE------------------------------TGSVWSPSVLLQDKALLWFTCSGFLASFVSGA 224 (395)
T ss_pred HHHhccccc---c-c-cc------------------------------hhhhhhhhhhccCceehHHHHHHHHHHHHHHH
Confidence 445554320 0 0 00 00001123445555544444333332222211
Q ss_pred hhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 298 GINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
.......+.+.. .+.+.+... .......+.........+++.||.++|+.+..+..+..++...+.
T Consensus 225 ~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (395)
T PRK10054 225 FASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI 292 (395)
T ss_pred hhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 111222222222 222332322 333334444555667888999999999988888777777665554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=184.71 Aligned_cols=277 Identities=12% Similarity=0.132 Sum_probs=188.1
Q ss_pred ccccCcccHHHHHHhhcCCchh-hHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 015963 65 TCGYSSPTQAEIISDLKLTISE-FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (397)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 143 (397)
.+...+.+.|.+.+|+|+|.++ .|.+.++++.+|++++++.|.++||+|.|+++.++.+.+++.+++.++++++..+.+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566788899999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHh---HHHHHHHHhhh
Q 015963 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLG---VLPCTLLIPGL 217 (397)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~---~~~~~~~~~~~ 217 (397)
.|++.|++.|... +...++..|+|+++|+++.++..++..+|.++++++++.+ |||+.+.+. ....+++++..
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a 199 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLA 199 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999988776 888655443 34444555666
Q ss_pred ccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhh
Q 015963 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (397)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 297 (397)
+++|..++.+.-+++.+.......+.....++.. .+. .+..+.........+..-++.....+.++...+.+....+
T Consensus 200 ~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~ 276 (511)
T TIGR00806 200 LFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG--GKL-EDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSA 276 (511)
T ss_pred HhCCCCchhhhhccccccccccccccccCCCCCc--ccc-chhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhh
Confidence 7788665543322211000000000000000000 000 0000000000001111112222223344455556666667
Q ss_pred hhHHHHHhHHHHHhhcCCCchh---HHHHHHHHHHHHHHHHHHHHHHHhch
Q 015963 298 GINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGR 345 (397)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~l~d~~~~ 345 (397)
+++-+..|...+.++..-+... ..-.+..+.+.+.++..|++-.++.+
T Consensus 277 g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 277 GYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 7777888887777665332221 34445556667778888887555544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=192.65 Aligned_cols=315 Identities=14% Similarity=0.167 Sum_probs=197.8
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
+.+..+..+++......+........++.+.+|+|- .+...|+.+.+.++.+++.++.|+++|.||||..++.+.++..
T Consensus 41 ~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~v 119 (599)
T PF06609_consen 41 RFIASFAAFSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGV 119 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 333333344444444555666667788899999994 5788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 015963 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (397)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (397)
+|+++++.++|...++++..+.|+|.|.... ....++|..|.|.|+...++......+....++.++..+ +|||.
T Consensus 120 vG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~ 198 (599)
T PF06609_consen 120 VGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI 198 (599)
T ss_pred hHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence 9999999999999999999999999877765 455689999999998888777766666555667776554 89999
Q ss_pred HHHhHHHHHHHHhhhccccCChhHHHhcC---CHHHHHHHHHHH------------------hCCCch---hHHHHHHH-
Q 015963 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMG---MTEDFESSLQVL------------------RGFDTD---ISIEVNEI- 257 (397)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~------------------~~~~~~---~~~~~~~~- 257 (397)
|++.++...+.++..++...+|++...++ +..+..+.++.+ .+.... ...-....
T Consensus 199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv 278 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV 278 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence 99998877766554333222233222211 122222222211 000000 00000000
Q ss_pred ------H--HHHhhh-cchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHH-HhhcCCCc-----hhHHH
Q 015963 258 ------K--RSVASS-SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANAGISS-----SNVAT 322 (397)
Q Consensus 258 ------~--~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~-----~~~~~ 322 (397)
. --.|.. ..+++.-..+++++++ .+.+.++..+.....++....+.|+. ..-++.++ .....
T Consensus 279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r---~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s 355 (599)
T PF06609_consen 279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRR---GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWIS 355 (599)
T ss_pred HHHHHHHHHHHhhhhccCCCCcCCHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhh
Confidence 0 011211 1123334455666532 12222222222222233333333433 32233332 12555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHH
Q 015963 323 FGLGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAASFFLVSVA 366 (397)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 366 (397)
...+++..+|.++.+.+..+++| |+.++++..++.+++.+++..
T Consensus 356 ~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~ 400 (599)
T PF06609_consen 356 SPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV 400 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc
Confidence 67778888889999999999887 666677777776665555543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-23 Score=192.47 Aligned_cols=266 Identities=13% Similarity=0.142 Sum_probs=185.3
Q ss_pred HhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh-----cchhH-HHHHHHHHHHHHHHHH
Q 015963 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKGS-LMIAAVPNIIGWLIIS 133 (397)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~l~~~~~~~~~ 133 (397)
+..+.......+.+|...++.|.+.++++.+ +.....+ ++++++|+++||+ ||||. ++.+.++.+++....+
T Consensus 22 ~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a 99 (491)
T PRK11010 22 FASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG 99 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 4455666677788999999999999999987 4444444 6899999999999 99985 6677777778877777
Q ss_pred hh---cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHH
Q 015963 134 FS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNWRVLAVL 205 (397)
Q Consensus 134 ~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~~~f~~ 205 (397)
+. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.. .|||..|++
T Consensus 100 ~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i 179 (491)
T PRK11010 100 FLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWL 179 (491)
T ss_pred HcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 75 4678888999999999999999999999999999999999999999999999888866643 389999999
Q ss_pred hHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHH
Q 015963 206 GVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (397)
Q Consensus 206 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (397)
.++..++..+..+++||+++.. .+ ++ + .++....++++.++++..+...
T Consensus 180 ~a~l~ll~~l~~~~~~e~~~~~---~~-~~-------------~--------------~~~~~~~~l~~~~~~~~~~~~l 228 (491)
T PRK11010 180 MAALLIPCIIATLLAPEPTDTI---PV-PK-------------T--------------LEQAVVAPLRDFFGRNNAWLIL 228 (491)
T ss_pred HHHHHHHHHHHHHhcCCCcccc---cc-cc-------------c--------------hhhhHHHHHHHHHcCcCHHHHH
Confidence 8887776665555577764310 00 00 0 0000112344555554443333
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHH-hhcCCCchh--HHH-HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 015963 286 IGIGLLVLQQLSGINGVLFYSSNIF-ANAGISSSN--VAT-FGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFF 361 (397)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--~~~-~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~ 361 (397)
....+.... ......+.+.++ ++.|++..+ ... ....++.+++.+++|+++||+++|+.+..+..+.+++.+
T Consensus 229 l~~~l~~~~----~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l 304 (491)
T PRK11010 229 LLIVLYKLG----DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNA 304 (491)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 322222211 222333444444 457887776 332 233468889999999999999998877766655555443
Q ss_pred H
Q 015963 362 L 362 (397)
Q Consensus 362 ~ 362 (397)
.
T Consensus 305 ~ 305 (491)
T PRK11010 305 G 305 (491)
T ss_pred H
Confidence 3
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=182.79 Aligned_cols=258 Identities=13% Similarity=0.154 Sum_probs=181.4
Q ss_pred ccCcccHH-HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015963 67 GYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (397)
Q Consensus 67 ~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r 145 (397)
....|.++ .+++++|.|..+.|++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSC 106 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 33345555 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHHHh-hhcccc
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIP-GLFFIP 221 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~~~~~~~~-~~~~~~ 221 (397)
+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+ +||+.|++.++..++..+ ..++.|
T Consensus 107 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 186 (400)
T PRK11646 107 ILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLP 186 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999988899999999999999999999999999999999999988777 899999988776655433 334445
Q ss_pred CChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHH
Q 015963 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (397)
Q Consensus 222 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (397)
|.+. .+ .+++.+..++++++++.............. ....
T Consensus 187 ~~~~-----~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 226 (400)
T PRK11646 187 AYKL-----ST-------------------------------VRTPVREGMTRVLRDKRFVTYVLTLTGYYM----LAVQ 226 (400)
T ss_pred cccc-----cc-------------------------------cchhhHHHHHHHHcCchHHHHHHHHHHHHH----HHHH
Confidence 4311 00 000011234445555443322222111111 1122
Q ss_pred HHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHH
Q 015963 302 VLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLM-DKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~-d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
...+.|.+.++.+.++.. ......++....+....+++. ||.+.++.+..+..+.+++...+.
T Consensus 227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~ 292 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG 292 (400)
T ss_pred HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 345667777776554444 333444444444444445544 456656666666666666655443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=184.03 Aligned_cols=272 Identities=16% Similarity=0.125 Sum_probs=192.9
Q ss_pred HHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh-----cchh-HHHHHHHHHHHHH
Q 015963 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKG-SLMIAAVPNIIGW 129 (397)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~l~~~~~ 129 (397)
...++..++..+.....+|.+.++.|+|.+++|++..+... .+.++++|+++||+ |||| .++++.++.+++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34456677778888889999999999999999999777776 69999999999999 8876 6888888888888
Q ss_pred HHHHhh---cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHH
Q 015963 130 LIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRV 201 (397)
Q Consensus 130 ~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~ 201 (397)
.+.++. ++++.+++..++.++..+...+...+++.|+.|+|+|+++.++...+..+|.++++.++..+ |||.
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 887776 35777888888888889899999999999999999999999999999999999888766443 8999
Q ss_pred HHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccch
Q 015963 202 LAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (397)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (397)
.|++.++..++..+..+++||+++.. ++.++ .+++....++++++++..
T Consensus 163 ~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~----------------------------~~~~~~~~~~~l~~~~~~ 211 (402)
T PRK11902 163 TYLLMAGLMLAGALTTLWAPEPEVPA---RPPRS----------------------------LGEAVVGPLRDFFSRRGA 211 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccc---cccch----------------------------hHHHHHHHHHHHHhCcCH
Confidence 99998877666555555667764310 00000 000112245667777766
Q ss_pred hhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchhHHHH--HHH-HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 015963 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATF--GLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358 (397)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~-~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~ 358 (397)
+.......+........ .....+.+.++.|.++...... ..+ ++.+++.++++++.||+++|+.+..+..+..+
T Consensus 212 ~~~l~~~~l~~~~~~~~---~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l 288 (402)
T PRK11902 212 WALLLLIVLYKLGDAFA---GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAV 288 (402)
T ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55544433333222111 1122333444568876653222 333 45788999999999999999887766666555
Q ss_pred HHHHH
Q 015963 359 SFFLV 363 (397)
Q Consensus 359 ~~~~~ 363 (397)
..+.+
T Consensus 289 ~~l~~ 293 (402)
T PRK11902 289 SNLGY 293 (402)
T ss_pred HHHHH
Confidence 54433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=183.68 Aligned_cols=268 Identities=12% Similarity=0.051 Sum_probs=190.3
Q ss_pred HHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHH----HHHHHHHHHHHHHH
Q 015963 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL----MIAAVPNIIGWLII 132 (397)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~l~~~~~~~~ 132 (397)
+.++...+..+...|.+|.+.+++|.|.+++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~ 88 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH
Confidence 44455556667888999999999999999999999999999999999999999999985433 222222222 244
Q ss_pred HhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHH
Q 015963 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (397)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~ 208 (397)
..+++++.+++.|+++|.+.+...|...++..++ +++|++..+......++|.+++|++++.+ |||..|++..+
T Consensus 89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~ 166 (382)
T TIGR00902 89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA 166 (382)
T ss_pred HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 5678999999999999999988889888887664 47788999999999999999999887766 89999887665
Q ss_pred HHHHHHhhhccccCCh-hHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHH
Q 015963 209 PCTLLIPGLFFIPESP-RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (397)
Q Consensus 209 ~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 287 (397)
..++.++.. .++|++ +. ++ + ++++.++..+.+++++++..+.....
T Consensus 167 ~~~~~~~~~-~~~~~~~~~----~~-~---------------------------~~~~~~~~~~~~~~l~~~~~~~~l~~ 213 (382)
T TIGR00902 167 GLAFMLIGF-LIKPTIPPK----DA-I---------------------------PEDESQGDSAFIALLKNPMNLRFLAA 213 (382)
T ss_pred HHHHHHHHH-HcCCCCCCC----cc-c---------------------------cccccccchhHHHHHcChHHHHHHHH
Confidence 433333322 333332 10 00 0 00000112234566666655444443
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
..+... .......+.+.++++.|.++.. .......+..+++.+..+++.||+++|+.+..+.....+....+..
T Consensus 214 ~~l~~~----~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 289 (382)
T TIGR00902 214 VCLIQG----AHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA 289 (382)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 333222 2444555777777888887766 4555667788888999999999999999999888888888776654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=183.03 Aligned_cols=262 Identities=13% Similarity=0.034 Sum_probs=181.5
Q ss_pred hcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcch----hHHHHHHHHHHHHHHHHHhhcch
Q 015963 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLIISFSKDS 138 (397)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~l~~~~~~~~~~~~~~ 138 (397)
....+...|.+|.+.+|+|.|.+++|++.+++.++..+++++.|+++||+||| +.+.++..+. .......++++
T Consensus 17 ~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 94 (382)
T PRK11128 17 FFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSF 94 (382)
T ss_pred HHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccH
Confidence 34557778999999999999999999999999999999999999999999994 3333222222 22233446889
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHH
Q 015963 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (397)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~ 214 (397)
+.+++.|++.|++.+...+...++..++ .++|+++.+.......+|..+||.+++.+ +||..|++.++..++..
T Consensus 95 ~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 95 WLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 9999999999999988889888887776 35677777777777788888888888765 99999987776544444
Q ss_pred hhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHH
Q 015963 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (397)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (397)
+...+.||+++. ++. +++.++...+++++++++..+.......+....
T Consensus 173 ~~~~~~~~~~~~----~~~----------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 220 (382)
T PRK11128 173 LGQLLRPTIMPQ----GES----------------------------RQQESAGWPAWKALLKEPTVWRFLLCVSLLQGS 220 (382)
T ss_pred HHHHccCCCCCc----ccc----------------------------ccccccccchHHHHHcChhHHHHHHHHHHHHHH
Confidence 433344543210 000 000001123466777776655544433333322
Q ss_pred HhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 295 QLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
......+.+.+.++.|.++.. .......+..++..++.+++.||+++|+.+..+....+++.+.+.
T Consensus 221 ----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~ 288 (382)
T PRK11128 221 ----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG 288 (382)
T ss_pred ----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 223444556666777887655 444455677788889999999999999998888877777665443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=168.18 Aligned_cols=277 Identities=14% Similarity=0.126 Sum_probs=215.5
Q ss_pred HHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 015963 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (397)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~ 130 (397)
....+....++.|+......+++|++++.|+++..|.+.+...++.++.+.+++.|++.+|+|+|+.+++|+.++++++.
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33444555577888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---hhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----------
Q 015963 131 IIS---FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------- 197 (397)
Q Consensus 131 ~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---------- 197 (397)
+.. ...++..++++-++.|.|.+...+....+++...++++-.+.+++.+..+++|.+++|++++.+
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~ 173 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS 173 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence 985 5678999999999999999999999999999999998889999999999999999999998654
Q ss_pred -------------hhHHHHHHhHHHHHHHHhhhcc--ccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Q 015963 198 -------------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA 262 (397)
Q Consensus 198 -------------~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (397)
.||++|...+...++..+.... .|+.+. ..+
T Consensus 174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~----------------------------------~~~ 219 (422)
T COG0738 174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV----------------------------------AAP 219 (422)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc----------------------------------ccc
Confidence 3677777766655544443333 343321 000
Q ss_pred hhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHH
Q 015963 263 SSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWL 339 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l 339 (397)
++.+.+.....++++++..+...+..+++...+ .....|.+.++.+ .|.+..+ ........+.++|++++.++
T Consensus 220 ~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~E----va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~l 295 (422)
T COG0738 220 SLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAE----VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSAL 295 (422)
T ss_pred cccccccchHHHHHhChHHHHHHHHHHHHHhHH----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111114667788877777677666666655 4556667777776 5665555 66677788899999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 340 MDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
.+|+...+.+.....+..+.++..++
T Consensus 296 m~~~~~~k~Laf~a~~~ill~~~~~l 321 (422)
T COG0738 296 MSRIKPEKYLAFYALIAILLLLAVAL 321 (422)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877665555444444443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=185.38 Aligned_cols=308 Identities=16% Similarity=0.145 Sum_probs=210.8
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l 124 (397)
.-+-|.+++...+......-....++.+.+.++++++.+.++++|+.++....+.+..|+.+.+.||+|.|.+.+.|.++
T Consensus 41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v 120 (509)
T KOG2504|consen 41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV 120 (509)
T ss_pred CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence 34456665555555433333444556788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHH-HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hh
Q 015963 125 NIIGWLIISFSKDSSFLFMG-RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NW 199 (397)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w 199 (397)
..+|.++.++++++|.+++. -++.|+|.|..+......+..||+ |+|+.+.|+...+.++|.++-|.+...+ ||
T Consensus 121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~ 199 (509)
T KOG2504|consen 121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGW 199 (509)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCc
Confidence 99999999999999988876 789999999999999999998876 8999999999999999999988888776 99
Q ss_pred HHHHHHhHHHHHHHHhhhccc-cCChhHHHhcCCHHHHHHHHHH-----------HhC-CCchhH----HHHHHHHHHHh
Q 015963 200 RVLAVLGVLPCTLLIPGLFFI-PESPRWLAKMGMTEDFESSLQV-----------LRG-FDTDIS----IEVNEIKRSVA 262 (397)
Q Consensus 200 ~~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~----~~~~~~~~~~~ 262 (397)
|+.+++.+.+.+-.++....+ |.+++.... .++..+.... ... .+.... .+....++..+
T Consensus 200 r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (509)
T KOG2504|consen 200 RGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD 276 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence 999988777665444433333 322221111 0000000000 000 000000 00000000000
Q ss_pred -hhcchhhhhH----HHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHH
Q 015963 263 -SSSRRTAIRF----AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGV 335 (397)
Q Consensus 263 -~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~ 335 (397)
.+....+... .++++++ .++...+.......++.....+++.+..+.+++... ......++..++++++
T Consensus 277 ~~~~~~~~~~~~~~d~~ll~~~----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~ 352 (509)
T KOG2504|consen 277 KWRNSPLQAFLSMLDLSLLKDP----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRII 352 (509)
T ss_pred cccccchhhhhhhhhHHHHcCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhh
Confidence 0000111111 3555553 344445555555556777788888888888887766 7777889999999999
Q ss_pred HHHHHHHhchh--HHHHHHHHHHHHHH
Q 015963 336 NTWLMDKAGRR--LLLLISSSGMAASF 360 (397)
Q Consensus 336 ~~~l~d~~~~~--~~~~~~~~~~~~~~ 360 (397)
.|++.|+...+ ....++.+..+++.
T Consensus 353 ~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 353 LGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred hhhhcCccccchHHHHHHHHHHHHHHH
Confidence 99999998743 44444444444444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=175.74 Aligned_cols=257 Identities=12% Similarity=0.148 Sum_probs=164.2
Q ss_pred HhhhcccccCcccHHH-HHHhhcCCchhhHHHHhhhHH-HHHHHHHHHHHHHhhhcchhHH-HHHHHHHHHHHHHHHhhc
Q 015963 60 IQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSL-MIAAVPNIIGWLIISFSK 136 (397)
Q Consensus 60 ~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~l~~~~~~~~~~~~ 136 (397)
+..++......|.+|. +.+++|.+.+++|++.+...+ ++.++.++.++ +||+||||.+ ..+.++.+++..+.++++
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 103 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNR 103 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444555676665 678999999999999877655 55555555555 9999999875 456677778888888999
Q ss_pred chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcc--hhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHH
Q 015963 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (397)
Q Consensus 137 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~ 210 (397)
+++.+++.+.+.|...+...+...+++.|+.++++| +...++.+.+.++|..++|++++.+ |||..|++.++..
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~ 183 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAF 183 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence 999887666555555557788888888888776655 3445778888888999998888665 9999999888776
Q ss_pred HHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhc-cchhhHHHHH
Q 015963 211 TLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK-RYWFPLMIGI 288 (397)
Q Consensus 211 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~ 288 (397)
++..+ .+.++||+++.. ++ ++ ++ .+. ..++ +.....+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~---~~-~~--------------------------~~-~~~-------~~~~~~~~~~~~~~~ 225 (393)
T PRK15011 184 IVCGVMVWLFLPSMRKEL---PL-AT--------------------------GT-LEA-------PRRNRRDTLLLFVIC 225 (393)
T ss_pred HHHHHHHHhhcCccCCCC---cc-cc--------------------------cc-ccc-------cccccccHHHHHHHH
Confidence 65544 455578764310 00 00 00 000 0001 1111111111
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 015963 289 GLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (397)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (397)
.. ..........+.|.+++ +.+.++.. .......+..+++.++.|+++||++||+.+..+.....+.
T Consensus 226 ~~----~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 295 (393)
T PRK15011 226 TL----MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF 295 (393)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 11 11223334456666664 35776554 3334445667788999999999999998777665544443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=172.80 Aligned_cols=268 Identities=15% Similarity=0.080 Sum_probs=169.5
Q ss_pred cccccCcccHHHH-HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---hhc---
Q 015963 64 FTCGYSSPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSK--- 136 (397)
Q Consensus 64 ~~~~~~~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~~~--- 136 (397)
.....+.|.+|.. .+++|.+..+.+++.+++.+++.+++++.|+++||+|||+.++.+....+++..... ..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (396)
T TIGR00882 16 FIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ 95 (396)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3445556777654 567899999999999999999999999999999999999999887766655443321 221
Q ss_pred --chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHH
Q 015963 137 --DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCT 211 (397)
Q Consensus 137 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~~~~ 211 (397)
.+..+.+.|++.|++.+...+....+..|..+ +++...+......++|..++|.+++.+ +||+.|++.+++.+
T Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~ 173 (396)
T TIGR00882 96 SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFAL 173 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHH
Confidence 23345667888888888888888777766433 334556666666778888888877655 89999999887777
Q ss_pred HHHhhhcc-ccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHH
Q 015963 212 LLIPGLFF-IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (397)
Q Consensus 212 ~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 290 (397)
+..+..+. .||+|+.. +.. +.. ..++++.+.++.+++++++..+...+....
T Consensus 174 ~~~~~~~~~~~~~~~~~-------~~~------------------~~~--~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 226 (396)
T TIGR00882 174 ILMLLLMFAKPKAPSSA-------TVA------------------NAL--GANASAFSLKLALELFRQRKFWMFVLYVVG 226 (396)
T ss_pred HHHHHHHHhCCCCchhh-------hhh------------------ccc--ccccCCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence 66544443 34443210 000 000 000111122345667777654433332222
Q ss_pred HHHHHhhhhHHHHHhHHHHHhhc----CCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 291 LVLQQLSGINGVLFYSSNIFANA----GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
... .+.....+.+.++++. +.+... .......+...++.+..+++.||+++|+.+.++..+.++...+..
T Consensus 227 ~~~----~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~ 302 (396)
T TIGR00882 227 VAC----VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS 302 (396)
T ss_pred HHH----HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 111 1222222344444332 332222 445556677788889999999999999998888777776555433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-21 Score=197.18 Aligned_cols=266 Identities=14% Similarity=0.061 Sum_probs=181.0
Q ss_pred cccHHHHHHhhcCCch--hhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---hhcchhHHHHH
Q 015963 70 SPTQAEIISDLKLTIS--EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSKDSSFLFMG 144 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~~--~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~~~~~~~l~~~ 144 (397)
..+.+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .+++++.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV 109 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3445556666776543 479999999999999999999999999999999998877666555443 45789999999
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-h------------hHHHHHHhHH-HH
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-N------------WRVLAVLGVL-PC 210 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-~------------w~~~f~~~~~-~~ 210 (397)
|+++|++.+...++..+++.|++|+++|++++++.+.+..+|.++|+++++++ . |++.+.+..+ ..
T Consensus 110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1146)
T PRK08633 110 TFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA 189 (1146)
T ss_pred HHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988765 1 2334333332 33
Q ss_pred HHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHH
Q 015963 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (397)
Q Consensus 211 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 290 (397)
++.++..+.+||.|+....+.+.++ ..........++.+++++..+..++...+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 243 (1146)
T PRK08633 190 VLGLIFAYRLPKVPAAAPEVFDKKK--------------------------YLFPKLLWRNLKLLRSDRVLWLAIIGLSY 243 (1146)
T ss_pred HHHHHHHhcCcCCCCCCcccccccc--------------------------cccHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3334445556776542111000000 00000111234455555544443333333
Q ss_pred HHHHHhhhhHHHHHhHHHHHh-hcCCCch-h--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 291 LVLQQLSGINGVLFYSSNIFA-NAGISSS-N--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
..+. ......+.|.++. ..|.+.. . .......++.+++.++.+++.||+++++.+.++.++.+++.+++.+
T Consensus 244 ~~~~----~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 318 (1146)
T PRK08633 244 FWFI----SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT 318 (1146)
T ss_pred HHHH----HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH
Confidence 3222 2233444555554 4577766 4 5566677888899999999999999988887777766666655543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=175.39 Aligned_cols=225 Identities=14% Similarity=0.144 Sum_probs=172.6
Q ss_pred cCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhh
Q 015963 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (397)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 160 (397)
+-+++++|++.+.+.+...+.+++.|.+.||+|+|..+++|.+.....++++++.+++++++++|.+||+|.+....+..
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhheecCCCc-chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHH
Q 015963 161 VYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTED 235 (397)
Q Consensus 161 ~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 235 (397)
++++|.+|+++ |++++|+.-.+.++|..+||.+|+.+ |.+.+|++.+++.++-..+.+++-|+.+
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~---------- 251 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE---------- 251 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc----------
Confidence 99999998654 79999999999999999999999887 9999999999988888777666544311
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHH-HhhcC
Q 015963 236 FESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANAG 314 (397)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g 314 (397)
.+++..++..+++++++.+......... .+.+.. ...+-.-.+.+ .++..
T Consensus 252 -------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai---~~~n~~-lafLePtlslwm~e~m~ 302 (464)
T KOG3764|consen 252 -------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAI---TFSNSS-LAFLEPTLSLWMLETMF 302 (464)
T ss_pred -------------------------cCccccccCccHHHHHhCchHhhhhcch---hhccch-HHHhCcccHHHHHHhcc
Confidence 0001223344567777766433322221 221111 12222222232 23333
Q ss_pred CCch-h--HHHHHHHHHHHHHHHHHHHHHHHhch
Q 015963 315 ISSS-N--VATFGLGVVQVVATGVNTWLMDKAGR 345 (397)
Q Consensus 315 ~~~~-~--~~~~~~~~~~~~~~~~~~~l~d~~~~ 345 (397)
++. + .......+...+++.+.|.+.||++.
T Consensus 303 -~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~ 335 (464)
T KOG3764|consen 303 -TPGWEVGLAFLPASLSYAIGTNLFGKLADKYPH 335 (464)
T ss_pred -CCCcceeeeecccccchhccCchHHHHHHhcCc
Confidence 233 2 55667788899999999999999994
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-20 Score=155.84 Aligned_cols=275 Identities=20% Similarity=0.205 Sum_probs=216.9
Q ss_pred hHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015963 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~ 128 (397)
++.+..+.+..+.---..+..+|+++++++|+|+|.+..|.++++..+...+.+++..++..|+|.++.+..++++.++|
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444444555556788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhh----hh-hhHHHH
Q 015963 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL----FV-NWRVLA 203 (397)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~----~~-~w~~~f 203 (397)
.++.... +.+.++.+-.+.|.|.+......++.+.+.+| |+-+..+++|.+..++|..+++.+.- .. +||...
T Consensus 91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL 168 (395)
T COG2807 91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL 168 (395)
T ss_pred HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence 9999887 77889999999999999999999999999998 77899999999999998777765553 33 799999
Q ss_pred HHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhh
Q 015963 204 VLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 283 (397)
.+-+.+++++++.|+--...++ ....+.+..+-..+++++.
T Consensus 169 ~~WAl~allAl~~WlPq~~r~~------------------------------------~~~~~~~~~~~~~vw~~~~--- 209 (395)
T COG2807 169 GFWALLALLALLIWLPQALREQ------------------------------------AASIATKLVSVRKVWRSPL--- 209 (395)
T ss_pred HHHHHHHHHHHHHHhhhccccc------------------------------------ccccccccccccccccCch---
Confidence 9999988888877653221100 0001111112233455543
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHH
Q 015963 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA-GRRLLLLISSSGMAASF 360 (397)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~-~~~~~~~~~~~~~~~~~ 360 (397)
.+.+.+++..+...++....|+|.++.|.|++..+ .......+..++.++....+.+|. ++|+..+....++.++.
T Consensus 210 -aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 210 -AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred -hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 44455566666677889999999999999998877 667788899999999999999976 45677777777777777
Q ss_pred HHHHH
Q 015963 361 FLVSV 365 (397)
Q Consensus 361 ~~~~~ 365 (397)
+.+.+
T Consensus 289 ~G~~~ 293 (395)
T COG2807 289 VGLLL 293 (395)
T ss_pred HHHHH
Confidence 66653
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=175.48 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=134.3
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
++|..+..........+.. ..++...|.+++++|+|.++.+++.++. .....++++.|++.||+|+|+++.++.+++.
T Consensus 25 ~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3344433333333333322 2334566789999999999999998874 4556778889999999999999999999999
Q ss_pred HHHHHHHhh------cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHH-HHHhhhhh--
Q 015963 127 IGWLIISFS------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML-AYLLGLFV-- 197 (397)
Q Consensus 127 ~~~~~~~~~------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~i~~~~-- 197 (397)
+++++++++ ++++.+.+.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|..+ +++....+
T Consensus 103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~ 181 (591)
T PTZ00207 103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD 181 (591)
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 689999999999999999999999999999997 88999999999999999975 55555555
Q ss_pred hhHHHHHHhHHHHHHHHh-hhcccc
Q 015963 198 NWRVLAVLGVLPCTLLIP-GLFFIP 221 (397)
Q Consensus 198 ~w~~~f~~~~~~~~~~~~-~~~~~~ 221 (397)
+|+..|++.+++.++..+ ...+++
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 888888877776665544 334443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=172.59 Aligned_cols=272 Identities=14% Similarity=0.052 Sum_probs=158.0
Q ss_pred ccCcccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---hhcchh-HH
Q 015963 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSKDSS-FL 141 (397)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~~~~~~-~l 141 (397)
+...|.+|. +.+++|++..+.|++.+++.+++.+++++.|+++||+|||++++.+..+.+++..... .++... ..
T Consensus 27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (420)
T PRK09528 27 SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNI 106 (420)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566664 4556999999999999999999999999999999999999999887666555443221 111111 01
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecC--CCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHHHhh
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAP--QNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~~~~~~~~~ 216 (397)
.....+.++..+.........+.++.+ .+++++.++.......+|..++|.+++.+ +|++.|++.++..++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~ 186 (420)
T PRK09528 107 LLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVL 186 (420)
T ss_pred HHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHH
Confidence 112222333333222222222333322 24567777888888888888888888766 8999999888777666555
Q ss_pred hccc-cCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHH
Q 015963 217 LFFI-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (397)
Q Consensus 217 ~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 295 (397)
.++. +|+++....++ + +.++++.......++.++++..+...+.........
T Consensus 187 ~~~~~~~~~~~~~~~~---~------------------------~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~ 239 (420)
T PRK09528 187 LFFAKPDAPSTAKVAN---A------------------------LGANASAVSLKDALALLKLPKFWFLVLYVIGVACFY 239 (420)
T ss_pred Hhcccccccchhhhcc---c------------------------hhcccccccHHHHHHHccCCCeEeehHHHHHHHHHH
Confidence 5444 33322000000 0 000001111223344555655444333222222211
Q ss_pred hhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 296 LSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
.........|......+.+.+... .......+...++.++.+++.||+++|+.+..+..+..++.+++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~ 311 (420)
T PRK09528 240 DVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF 311 (420)
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh
Confidence 111112233333333333443333 4455566777899999999999999999988887777776665543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-21 Score=196.38 Aligned_cols=256 Identities=14% Similarity=0.058 Sum_probs=175.2
Q ss_pred HHHhhcCCc-hhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHH---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015963 76 IISDLKLTI-SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI---AAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 76 i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (397)
+.++.+.+. ...++..+++.+.++++++++|+++||+|||+++.. +.++..+..+.+...++++.++++|+++|++
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~ 121 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIH 121 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333444333 347888999999999999999999999999997633 3333333333344458999999999999999
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhccccCChhHH
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~ 227 (397)
.+...|+..+++.|++++++|++++++.+++..+|.++||.+++++ +|++.|+..++..++.++..+++|+++...
T Consensus 122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1140)
T PRK06814 122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAA 201 (1140)
T ss_pred HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999999999999999999999999999999999887 899998666666665566666666653200
Q ss_pred HhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHH
Q 015963 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSS 307 (397)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (397)
. ..+.+. ....+....++.+.+++..+...+...+..+. ...+..+.|
T Consensus 202 ~-~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p 249 (1140)
T PRK06814 202 P-DLKIDR---------------------------NIIRSTITLLKYAKADKRIWLAILGISWFWLV----GAVVLSQLP 249 (1140)
T ss_pred C-CCeecc---------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHhH
Confidence 0 000000 00000112345555555554444433333322 234445667
Q ss_pred HHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 015963 308 NIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (397)
Q Consensus 308 ~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (397)
.++++ .|.++.. ......+++.++|.++.++++|+..+++.+..+.++.+++.+.+
T Consensus 250 ~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l 308 (1140)
T PRK06814 250 LLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDL 308 (1140)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHH
Confidence 77665 4666554 56667788999999999999988777665555555544444433
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-20 Score=170.34 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=125.0
Q ss_pred ccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHH
Q 015963 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLE 148 (397)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~r~l~ 148 (397)
.+...+.+++|.+.++.+++.+.+.....+..+++|+++|| +||||+++.+.++++++.++++++++... ++++|+++
T Consensus 36 ~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~ 115 (489)
T PRK10207 36 ILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTI 115 (489)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34556788899999999999999999999999999999999 99999999999999999999999876554 45789999
Q ss_pred HHhhhhhhhhhhhhhheecCCCc--chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhh
Q 015963 149 GFGVGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~ 216 (397)
|+|.|...+...+++.|.+|+++ |.++++++..+.++|..+||.+++++ |||+.|++.++..++.++.
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~ 189 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLV 189 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998774 57788999999999998888887766 9999999875533333333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=167.07 Aligned_cols=261 Identities=11% Similarity=0.028 Sum_probs=168.7
Q ss_pred cccccC-cccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhcchhHH
Q 015963 64 FTCGYS-SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSKDSSFL 141 (397)
Q Consensus 64 ~~~~~~-~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~~~~~~~~~~~~~~~l 141 (397)
...+.. .|+.+.+.+++|.+.+++|++.+++.++..+++++.|+++||+|| |+++.++.++..++..+..+.++++.+
T Consensus 16 ~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (418)
T TIGR00889 16 FIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGM 95 (418)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 333444 344556778899999999999999999999999999999999965 778888888888998888999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhh--------eecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHH
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIA--------EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~ 209 (397)
++.|++.|++.+...+...++.. |......|.+..|. +|..++|.+++.+ .|+ +|++.++.
T Consensus 96 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~-~f~~~~~~ 168 (418)
T TIGR00889 96 FPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNI-QLYITAGS 168 (418)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhH-HHHHHHHH
Confidence 99999999987766666554432 22222334444442 4555555555544 344 35555555
Q ss_pred HHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHH
Q 015963 210 CTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (397)
Q Consensus 210 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 289 (397)
.++..+..+++||+|+...++ + ++.++....+.+++++++.++..++..+
T Consensus 169 ~~~~~~~~~~~~e~~~~~~~~---~---------------------------~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 218 (418)
T TIGR00889 169 SALLGVFALTLPDIPVAKSTA---K---------------------------MSIKVMLGLDAFILFKNKRMAIFFFFSM 218 (418)
T ss_pred HHHHHHHHhcCCCCCCCcccc---c---------------------------cCHHHHhhhhHHHHhcCCCeeeHHHHHH
Confidence 555545556778875310000 0 0000001112344566665544444333
Q ss_pred HHHHHHhhhhHHHHHhHHHHHhhcCCCc--------h--hHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 015963 290 LLVLQQLSGINGVLFYSSNIFANAGISS--------S--NVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (397)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~--~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (397)
+.... ......+.+.+.++.|.++ . ........+..+++.+..++++||+|+|+.+..+.++..++
T Consensus 219 ~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~ 294 (418)
T TIGR00889 219 LLGAP----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALR 294 (418)
T ss_pred HHHhH----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 32221 2223345566666655432 1 25555667788889999999999999999999988887777
Q ss_pred HHHHHH
Q 015963 360 FFLVSV 365 (397)
Q Consensus 360 ~~~~~~ 365 (397)
..++..
T Consensus 295 ~~l~~~ 300 (418)
T TIGR00889 295 FGFFAY 300 (418)
T ss_pred HHHHHH
Confidence 655544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-18 Score=155.50 Aligned_cols=268 Identities=12% Similarity=0.046 Sum_probs=178.9
Q ss_pred HHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHH--HhhhHHHHHHHHHHHHH-HHhhhcchhHHHHHHHH-HHHH
Q 015963 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIF--GSLANVGAMVGAIASGQ-IAEYIGRKGSLMIAAVP-NIIG 128 (397)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~--~s~~~~~~~~~~~~~g~-l~dr~Grr~~~~~~~~l-~~~~ 128 (397)
..+...++..|+..+...|.+|.+.+|.|.|.+++|.+ .+++.+...+.+++.++ ..||+||||..++...+ .++.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 44556678888888999999999999999999999997 46778888888888855 79999999987665533 2222
Q ss_pred HHHHH-h--hcc-hhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhh----hhhhH
Q 015963 129 WLIIS-F--SKD-SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL----FVNWR 200 (397)
Q Consensus 129 ~~~~~-~--~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~----~~~w~ 200 (397)
....+ + ..+ ...++..-++.++..+...+...++..|..++++++...+....+..+|..+|+...+ ..+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 22222 1 222 3334445566667777888888888889888888888888888888888888886544 44999
Q ss_pred HHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccc
Q 015963 201 VLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRY 280 (397)
Q Consensus 201 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (397)
..|++.++..++..+..++++|+++. +.+ +++++..+.+++++++.
T Consensus 164 ~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~-------------------------------~~~~~~~~~~~~l~~~~ 209 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLWLKDRAVA---SPE-------------------------------APLARRASLFRFFRRPL 209 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcC---ccc-------------------------------cchhhHHHHHHHHcCcC
Confidence 99999888777665544444433210 000 00001123456666665
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHH-HHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 015963 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLG-VVQVVATGVNTWLMDKAGRRLLLLISSSGMA 357 (397)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~-~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~ 357 (397)
.+.......+.... ......+.+.++++.|+++.+ ......+ ...+++.++.|++.||+++|+.+..+..+..
T Consensus 210 ~~~~~~~~~l~~~~----~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 285 (390)
T TIGR02718 210 AWSLLALALLSAMT----AVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAG 285 (390)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54444433333222 233334556677778888776 3333333 3556778999999999999998887766553
Q ss_pred H
Q 015963 358 A 358 (397)
Q Consensus 358 ~ 358 (397)
+
T Consensus 286 ~ 286 (390)
T TIGR02718 286 S 286 (390)
T ss_pred H
Confidence 3
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=159.54 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=134.6
Q ss_pred HhhhcccccCcccHHHH-HHh--hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhh
Q 015963 60 IQFGFTCGYSSPTQAEI-ISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFS 135 (397)
Q Consensus 60 ~~~~~~~~~~~~~~~~i-~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~ 135 (397)
+...+......+.+|.+ .++ +|.+..+.+++.+.+.+++.++++++|+++|| +|||+++.++.++.+++.++.+++
T Consensus 20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~ 99 (475)
T TIGR00924 20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS 99 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444445666655 445 89999999999999999999999999999999 899999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCc---chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHH
Q 015963 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (397)
Q Consensus 136 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~ 208 (397)
++++.++++|.+.|++.|...+...++++|++|+++ |+.+.++.+.+.++|..+||.+++.+ +||+.|++.++
T Consensus 100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~ 179 (475)
T TIGR00924 100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV 179 (475)
T ss_pred ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 998899999999999999999999999999998754 88899999999999999999998776 89999998776
Q ss_pred HHHHHHhh
Q 015963 209 PCTLLIPG 216 (397)
Q Consensus 209 ~~~~~~~~ 216 (397)
..++.++.
T Consensus 180 ~~~~~~l~ 187 (475)
T TIGR00924 180 GMVIGLLT 187 (475)
T ss_pred HHHHHHHH
Confidence 55544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=153.72 Aligned_cols=114 Identities=17% Similarity=0.289 Sum_probs=106.0
Q ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhh
Q 015963 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162 (397)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 162 (397)
+....|++.+.|.++..+.++.+|.++||+|||.+++.|.+..++...+.+.++|+..++++|++.|+..| ...+..++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence 44457999999999999999999999999999999999999999999999999999777777999999885 55667899
Q ss_pred hheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 163 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
++|..++|+|+++++..++.+++|.++||.+|+++
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHH
Confidence 99999999999999999999999999999999987
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-19 Score=163.49 Aligned_cols=258 Identities=16% Similarity=0.123 Sum_probs=173.5
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh----hcchh-HHHHHHHHHHHHHHHHHhhcc------hhH
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKG-SLMIAAVPNIIGWLIISFSKD------SSF 140 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~l~~~~~~~~~~~~~------~~~ 140 (397)
..+.+.+++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4456778899999999999999999999999999999997 68855 566788888888888877664 345
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhheec-CCCcchhHHHHHHHHHHHHHHHHHHhhh-----------hhhhHHHHHHhHH
Q 015963 141 LFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGL-----------FVNWRVLAVLGVL 208 (397)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~-----------~~~w~~~f~~~~~ 208 (397)
+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.. ..+||+.+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 667788899988888888888889987 4688999999888877777655443321 2379999988887
Q ss_pred HHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHH
Q 015963 209 PCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (397)
Q Consensus 209 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 287 (397)
+.++..+ ..+..||+++.. +. .++++.+....++++++++.++.....
T Consensus 182 l~~~~~~~~~~~~~e~~~~~----~~---------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 182 IGVVSLIICFFGTKERYSEI----PK---------------------------NIEKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHHcCCEecCCCC----Cc---------------------------ccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 7666644 345567654200 00 000011122344556666554443333
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHhhc-CCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 288 IGLLVLQQLSGINGVLFYSSNIFANA-GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
..+.... ......+.+.+.+.. + ++.. .......++.+++.++.++++||+|+|+.+..+..+.+++.+.+.
T Consensus 231 ~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 305 (437)
T TIGR00792 231 YLFYNLA----FNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF 305 (437)
T ss_pred HHHHHHH----HHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 3322222 222222333333221 2 1222 344455788889999999999999999999888877777665554
Q ss_pred H
Q 015963 365 V 365 (397)
Q Consensus 365 ~ 365 (397)
+
T Consensus 306 ~ 306 (437)
T TIGR00792 306 F 306 (437)
T ss_pred H
Confidence 3
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-18 Score=154.98 Aligned_cols=280 Identities=14% Similarity=0.146 Sum_probs=180.3
Q ss_pred cccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHh----hhcchhHHHHH-HHHHHHHHHHHHhhcch
Q 015963 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLMIA-AVPNIIGWLIISFSKDS 138 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~l~~~~~~~~~~~~~~ 138 (397)
+..+...+..+.+.+++|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .+...++.++.+++++.
T Consensus 18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 44455566677788899999999999999999999999999999999 59999998875 66677777777777664
Q ss_pred h-----------------HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcc--hhHHHHHHHHHHHHHHHHHHhhhhh--
Q 015963 139 S-----------------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV-- 197 (397)
Q Consensus 139 ~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~i~~~~-- 197 (397)
. .++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.++|+.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3 223333344557777888889999999998865 5789999999999999999888643
Q ss_pred -----------------hhHHHHHHhHHHHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 015963 198 -----------------NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKR 259 (397)
Q Consensus 198 -----------------~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (397)
+.|+.|++.++..++..+ ..+..+|.|....+..+.++ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~---------------------~-- 234 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE---------------------A-- 234 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh---------------------c--
Confidence 457788888776666544 56668887531100000000 0
Q ss_pred HHhhhcchhhhhHHHHHhc-cchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh--cCCCc--------h----hHHHHH
Q 015963 260 SVASSSRRTAIRFAELKRK-RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN--AGISS--------S----NVATFG 324 (397)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~--------~----~~~~~~ 324 (397)
.+.++.+....++++++. +...+.+...+...++.+.+...+..|.+.+..+ ++-++ . .+....
T Consensus 235 -~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~ 313 (477)
T TIGR01301 235 -APPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLML 313 (477)
T ss_pred -ccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHH
Confidence 000000111123333332 1122233333333333334445555555555543 12111 1 134445
Q ss_pred HHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHH
Q 015963 325 LGVVQVVATGVNTWLMDKAGR-RLLLLISSSGMAASFFLVSVAF 367 (397)
Q Consensus 325 ~~~~~~~~~~~~~~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 367 (397)
.++...+.+++..++.+|+|+ |+....+.++.+++++...+..
T Consensus 314 ~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~ 357 (477)
T TIGR01301 314 NSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVT 357 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 566666777888899999985 6776888888888877776544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-18 Score=156.63 Aligned_cols=268 Identities=14% Similarity=0.144 Sum_probs=186.4
Q ss_pred ccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh-----cchh
Q 015963 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSS 139 (397)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----~~~~ 139 (397)
...+.....+.+..++.-|+..++++.++..+...+.++++|.++||++|||+++.+.++.++..+..++. .+.+
T Consensus 25 G~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~ 104 (524)
T PF05977_consen 25 GDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPW 104 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHH
Confidence 33444455666777777788999999999999999999999999999999999999988777665554432 4778
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh
Q 015963 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~ 215 (397)
.+++.-++.|++.+...|+..+.+.|..|+++...+.++.+...++...+||.+++.+ |-.+.|.+.++..++.+.
T Consensus 105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL 184 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999988876 777888888776555544
Q ss_pred hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHH
Q 015963 216 GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (397)
Q Consensus 216 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 295 (397)
.....+.+++ .++... ++-.+.-+..++-+.+++..+..+....+..+.
T Consensus 185 ~l~~~~~~~~--~~~~~~----------------------------e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~- 233 (524)
T PF05977_consen 185 ALLRWKPPPP--PSSLPR----------------------------ERFFSALREGLRYVRSSPPLRSVLLRSFLFNLF- 233 (524)
T ss_pred HHHHcccccc--ccccch----------------------------hhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHh-
Confidence 4333332211 000000 000011112233333333333333222222221
Q ss_pred hhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 015963 296 LSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (397)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (397)
...+...+|.+.++ .|.++.. +.....+++.++|.++.+++.+|+++++++..+.+..+++++.+++.
T Consensus 234 ---~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 234 ---ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred ---hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 12223345655543 4665554 66778899999999999999999999888888877777766665553
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=149.29 Aligned_cols=143 Identities=16% Similarity=0.270 Sum_probs=120.4
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHH
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEG 149 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G 149 (397)
....+.+++|.+.++.+++.+.+........+++|+++|| +|||+.+..+.++.+++.+++++++ +.+.+.++|+++|
T Consensus 44 l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~g 123 (500)
T PRK09584 44 MAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIA 123 (500)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3445678999999999999888877777777899999999 5999999999999999999998874 5566778899999
Q ss_pred HhhhhhhhhhhhhhheecCCCc--chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHH
Q 015963 150 FGVGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~ 214 (397)
++.|...+...+++.|++|+++ |..++++++.+.++|..+||.+++++ |||+.|++.++..++.+
T Consensus 124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998654 44578888899999999999988776 89999998876544443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-16 Score=135.45 Aligned_cols=285 Identities=16% Similarity=0.102 Sum_probs=202.5
Q ss_pred cCCcchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHH
Q 015963 42 RDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (397)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 121 (397)
.+..+++|.+++++++..+.+++..-.++++.......|+ +.+..-|+.-+|++.+....+++-|+.||+|-|...+++
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 3456788999999999999999999889999888888999 888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc------chh--HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015963 122 AVPNIIGWLIISFSK------DSS--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (397)
Q Consensus 122 ~~l~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 193 (397)
..+.++|+.+-..+. .++ ....+..+.+.+.-...........-|+++++|..+..+-..+..+|..++.++
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 999999999987763 344 667889999998877777778888899999999999999888888888888777
Q ss_pred hhhh----------hhHH--HHHHhHHHHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 015963 194 GLFV----------NWRV--LAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRS 260 (397)
Q Consensus 194 ~~~~----------~w~~--~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (397)
...+ .|.. .|+....+..+.++ ..+..++.|+.-.+ .. .
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps--------------------~s--------~ 247 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS--------------------AS--------Q 247 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc--------------------hh--------H
Confidence 7554 4654 34433333333322 22333333321000 00 0
Q ss_pred HhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHH
Q 015963 261 VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISS--SNVATFGLGVVQVVATGVNTW 338 (397)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 338 (397)
...++.+-..+.++.++++.+....++..... ..++.+...+...+...|+++ .........+++++++.+.|.
T Consensus 248 ~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~----g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi 323 (480)
T KOG2563|consen 248 AALQDASFPKSIKSCFKNRQFIILAICYGIGL----GLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI 323 (480)
T ss_pred hhhhcCcHHHHHHHHHcCccHHHHHHHHhhhH----HHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh
Confidence 00011224456677777766544444433333 334555555544444456653 337777888899999999999
Q ss_pred HHHHhch-hHHHHHHHHHHHHH
Q 015963 339 LMDKAGR-RLLLLISSSGMAAS 359 (397)
Q Consensus 339 l~d~~~~-~~~~~~~~~~~~~~ 359 (397)
+.||.++ |..+.+......++
T Consensus 324 i~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 324 IADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 9999987 55555555554444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=156.23 Aligned_cols=175 Identities=11% Similarity=0.056 Sum_probs=132.7
Q ss_pred ccHHHH-HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH---HHhhcchhHHHHHHH
Q 015963 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI---ISFSKDSSFLFMGRL 146 (397)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~---~~~~~~~~~l~~~r~ 146 (397)
...|.+ ++++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...++++++
T Consensus 271 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (490)
T PRK10642 271 TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLL 350 (490)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345554 4678988888888888899999999999999999999999988887654433322 223456777888899
Q ss_pred HHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHhhhcccc
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIP 221 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~ 221 (397)
+.|++.+........++.|.+|++.|+.++++......++..++|.+.+++ +|+.++++..+.+++.++..+++|
T Consensus 351 ~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 351 MLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999888777777788889999999999999874333444455666666554 477777666666666666666789
Q ss_pred CChhHHHhc-----CCHHHHHHHHHHHhC
Q 015963 222 ESPRWLAKM-----GMTEDFESSLQVLRG 245 (397)
Q Consensus 222 e~~~~~~~~-----~~~~~~~~~~~~~~~ 245 (397)
|+|+++.++ ++.||+.+.+++++.
T Consensus 431 es~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 431 ETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred cccCCCCCCccccccchhhHHHHhhcccc
Confidence 999987754 888999999888863
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=147.28 Aligned_cols=261 Identities=16% Similarity=0.171 Sum_probs=184.5
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHh----hhcchhHHH-HHHHHHHHHHHHHHhh-c-------ch
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLM-IAAVPNIIGWLIISFS-K-------DS 138 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~-~~~~l~~~~~~~~~~~-~-------~~ 138 (397)
..+.+.+.+|+++...|.+..+..+..++..|+.|.++| |+||||..+ .|.+..+++.+++... + ..
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 455677788999999999999999999999999999999 899877665 6788888888877766 4 12
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhheecC-CCcchhHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHh
Q 015963 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLG 206 (397)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----------~w~~~f~~~ 206 (397)
..+.+..++..++.........++..|..+ +++|.+..+.-+.+..+|..+...+...+ +|++..++.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~ 183 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL 183 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence 335667777799998999999999999997 57899999988888888776444433222 588888887
Q ss_pred HHHHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHH
Q 015963 207 VLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (397)
Q Consensus 207 ~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (397)
+++.++..+ ..+..+|+++ +.+.++++.+.+..++.+++++.++...
T Consensus 184 ~iv~~v~~~i~~~~~ke~~~--------------------------------~~~~~~~~~~~~~~~~~~~~nr~~~~l~ 231 (428)
T PF13347_consen 184 AIVGLVFFLITFFFVKERSV--------------------------------EVTEQEKKISLRDSLRSLFRNRPFRILL 231 (428)
T ss_pred HHHHHHHhhhhhheeeeccc--------------------------------cccccccccccccchhhhcccchHHHHH
Confidence 777666544 4555677211 0001112223344567777777766665
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
....+.............+|....+ +.+... .......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl---~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 308 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVL---GNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF 308 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHh---cCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence 5555544444333333344444433 333222 555567788889999999999999999999999999888887766
Q ss_pred HHH
Q 015963 365 VAF 367 (397)
Q Consensus 365 ~~~ 367 (397)
+..
T Consensus 309 ~~~ 311 (428)
T PF13347_consen 309 FLG 311 (428)
T ss_pred HHH
Confidence 543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-15 Score=135.39 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=117.8
Q ss_pred ccHH-HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHH
Q 015963 71 PTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLL 147 (397)
Q Consensus 71 ~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l 147 (397)
..+| .+.+++|.++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++..++.++.+..+ +...+.++..+
T Consensus 30 ~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~l 109 (493)
T PRK15462 30 ALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAI 109 (493)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3444 45677899999999999999999999999999999999 999999999999999988776543 22334445555
Q ss_pred HHHhhhhhhhhhhhhhheecCCC--cchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh
Q 015963 148 EGFGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~ 215 (397)
.++|.|...+...++++|.+|++ +|..++++...+.++|..++|.+.+++ |||+.|.+.++..++.++
T Consensus 110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li 183 (493)
T PRK15462 110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLV 183 (493)
T ss_pred HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence 56677777787788999999875 688899999999999999999999877 899999987654444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.5e-16 Score=142.94 Aligned_cols=251 Identities=13% Similarity=0.055 Sum_probs=158.8
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh----hcchhH-HHHHHHHHHHHHHHHHhhcc------hhH
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGS-LMIAAVPNIIGWLIISFSKD------SSF 140 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~l~~~~~~~~~~~~~------~~~ 140 (397)
+...+.+++|+|..++|.+.++..+..++..|+.|+++|| +||||. ++.+.+..++..++....++ ...
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 4456778899999999999999999999999999999998 788555 55677777777766655543 345
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhheec-CCCcchhHHHHHHHHHHHHHHHHHHhh----hh-------hhhHHHHHHhHH
Q 015963 141 LFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLG----LF-------VNWRVLAVLGVL 208 (397)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~----~~-------~~w~~~f~~~~~ 208 (397)
+++...+.+.+.........++..|+. ++++|++..++......+|..+++.+. .. .+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 556677777777777777788999988 568899888887777777666654432 22 267877777766
Q ss_pred HHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHH
Q 015963 209 PCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287 (397)
Q Consensus 209 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 287 (397)
+.++..+ .++..+|.++. + ++++.+.....+.+++++.++.....
T Consensus 192 i~~v~~~~~~~~~~e~~~~--~--------------------------------~~~~~~~~~~~~~~~~n~~~~~l~~~ 237 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYTP--E--------------------------------VDNSSSVWKDLKLLLGNSQWRIMFIF 237 (444)
T ss_pred HHHHHHHHHhCCeEEecCC--C--------------------------------CcCCCCHHHHHHHHhCCchHHHHHHH
Confidence 6555443 33444553210 0 00111223455666777766655444
Q ss_pred HHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Q 015963 288 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAAS 359 (397)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 359 (397)
..+.............+|....+ +..... .......+..+++.++.+++.||+|+|+....+.....++
T Consensus 238 ~~~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~ 307 (444)
T PRK09669 238 NVVLLTAVVTRGGATLYYVNYVL---LRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVIL 307 (444)
T ss_pred HHHHHHHHHHHhhhhheeeeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 33332222111111222222211 111111 2333445667788889999999999999988776555443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-16 Score=144.61 Aligned_cols=259 Identities=11% Similarity=0.009 Sum_probs=158.6
Q ss_pred HHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHh----hhcch-hHHHHHHHHHHHHHHHHHhhcc------hhHH
Q 015963 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRK-GSLMIAAVPNIIGWLIISFSKD------SSFL 141 (397)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr-~~~~~~~~l~~~~~~~~~~~~~------~~~l 141 (397)
...+.+.+|++...+|.+..+.-+..++..|+.|+++| |+||| +.++.+.+..+++.++.-..++ +..+
T Consensus 30 ~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~ 109 (473)
T PRK10429 30 MYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV 109 (473)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 33466678999999999999999999999999999999 66995 5555677777777666644332 2345
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheec-CCCcchhHHHHHHHHHHHHHHHHHHhhh----h-------hhhHHHHHHhHHH
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGL----F-------VNWRVLAVLGVLP 209 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~----~-------~~w~~~f~~~~~~ 209 (397)
++...+.+++.....+...++..|.. ++++|.+..++-.....+|..+.+.+.. . .+|+....+.+++
T Consensus 110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~ 189 (473)
T PRK10429 110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAF 189 (473)
T ss_pred HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 55667778888888888899999998 5899999888866666665444333221 1 1567666666665
Q ss_pred HHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHH
Q 015963 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (397)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (397)
.++..+ ..+..+|.++.... +..++++.+.+..++.+++++.++..+...
T Consensus 190 ~~~~~~~~~~~~~e~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~ 240 (473)
T PRK10429 190 FIVSTIITLRNVHEVYSSDNQ-----------------------------VSAEGSHLTLKDIVALIYKNDQLSCLLGMA 240 (473)
T ss_pred HHHHHHHHHcCceecCCcccc-----------------------------ccccccCCCHHHHHHHHhcCHHHHHHHHHH
Confidence 554433 34446665320000 000001112223344444554443333332
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
.+... .......+.+.+.+....+... .......+..+++.++.+++.||+|+|+.+..+..+.+++.+.+.
T Consensus 241 ~~~~~----~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~ 314 (473)
T PRK10429 241 LAYNI----ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLL 314 (473)
T ss_pred HHHHH----HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 22222 2222333333333322222222 334445577888999999999999999998888776665555443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=136.06 Aligned_cols=176 Identities=19% Similarity=0.249 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHhhhcccccCcccHHHHHHh--hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHH
Q 015963 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPN 125 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~ 125 (397)
|..+.++.+.+++.+...+++.+..-.+.++ .+.+.+..|++.++..++.+++++.+|....|.++ |+.++.|.++.
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHH
Confidence 3344455555666677777777765555555 66777889999999999999999999999999997 99999999999
Q ss_pred HHHHHHH-Hhh---c-chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---
Q 015963 126 IIGWLII-SFS---K-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--- 197 (397)
Q Consensus 126 ~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--- 197 (397)
.+++++. +.. + ..+.++++|++.|+|.| ......+|+++....++|.++++....+..+|.++||.++..+
T Consensus 113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L 191 (488)
T KOG2325|consen 113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL 191 (488)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence 9999998 332 3 56789999999999985 4566789999999899999999999998889988888888555
Q ss_pred ---h-----------hHHHHHHhHHHHHHHHh-hhccccCChh
Q 015963 198 ---N-----------WRVLAVLGVLPCTLLIP-GLFFIPESPR 225 (397)
Q Consensus 198 ---~-----------w~~~f~~~~~~~~~~~~-~~~~~~e~~~ 225 (397)
| +..+-|+.+++.++.++ +.++++|.++
T Consensus 192 g~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 192 GEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred cCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 1 34667777777777655 4455677654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=130.12 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=131.9
Q ss_pred chhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHHHHH
Q 015963 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVP 124 (397)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l 124 (397)
.++.+....+|+..|.++++....+.+..+...+.+++.++..++.++|.+-..+-++++|++.|| +|.|..-++-++.
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~f 119 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIF 119 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHH
Confidence 456777788888889999999988888889999999999999999999999999999999999996 7888877777777
Q ss_pred HHHHHHHHH---hhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 125 NIIGWLIIS---FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 125 ~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
..+|.++++ ..+.+|+++++|++.|+|.-....+..++...|+..|+.+.++|+......+|..+--.+.+++
T Consensus 120 v~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 120 VFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence 778877766 4689999999999999999888899999999999999999999999999999877654444433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-15 Score=138.00 Aligned_cols=291 Identities=12% Similarity=0.004 Sum_probs=174.6
Q ss_pred HHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhc-----chhHHHHHHHHHH-
Q 015963 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMIAAVPNI- 126 (397)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~l~~- 126 (397)
.++...++..|+..-......|.+.+++|++.++++...+...+...+-.+ +|+++||++ ||+.++++.++.+
T Consensus 29 ~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~ 107 (468)
T TIGR00788 29 AIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSA 107 (468)
T ss_pred HHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHH
Confidence 344444566676633444556677888999999999999999999999655 999999998 7777777776663
Q ss_pred HHHHHHHhhcchhHHH-HHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHH---HHHHHHHHHHHHHhhhhh----h
Q 015963 127 IGWLIISFSKDSSFLF-MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN---QLSVTIGIMLAYLLGLFV----N 198 (397)
Q Consensus 127 ~~~~~~~~~~~~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~---~~~~~~g~~~~~~i~~~~----~ 198 (397)
+.....+..++..... +..++.+++.+...++..++..|..+ +++....+.. .....+|..+++.+++.+ +
T Consensus 108 ~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~ 186 (468)
T TIGR00788 108 ILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL 186 (468)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4333334345544444 47899999999999999999999998 5554433333 222346666666666554 8
Q ss_pred hHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhc
Q 015963 199 WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278 (397)
Q Consensus 199 w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (397)
||..|++.+++.++..+...+++|++.....+.+.++. . . .. ...........+.....++.+++
T Consensus 187 ~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~--~-------~-~~-----~~~~~~~~~~~~~~~~l~~~l~~ 251 (468)
T TIGR00788 187 TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE--M-------N-MA-----LLTLGVLANVKVQILGLRGAIQL 251 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccccccccccccccch--h-------h-hh-----hhhhhHHHHHHHHHHHHHHHHhc
Confidence 99999988877776655566778863100000000000 0 0 00 00000000001111223333444
Q ss_pred cchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 015963 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGM 356 (397)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~ 356 (397)
+..++.+....+.+...........++.+ ...|.++.. ......+++.+++....+++.+|++.|+.+.++.++.
T Consensus 252 ~~i~~~l~fifl~~~~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~ 328 (468)
T TIGR00788 252 LEIAKPLIFIFLSYANLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLY 328 (468)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 44333222222211111111101111111 235777766 5566677899999999999999999999999888888
Q ss_pred HHHHHHH
Q 015963 357 AASFFLV 363 (397)
Q Consensus 357 ~~~~~~~ 363 (397)
+++.+..
T Consensus 329 ~~~~~~~ 335 (468)
T TIGR00788 329 TLSSLFD 335 (468)
T ss_pred HHHHhCc
Confidence 7776543
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-14 Score=127.43 Aligned_cols=267 Identities=16% Similarity=0.181 Sum_probs=176.3
Q ss_pred cccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHhhcchhHHH
Q 015963 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-RKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~l~~~~~~~~~~~~~~~~l~ 142 (397)
+..+.+.|..+.+-++.|.|..|+|.+.++..+...++++++|.++||.+ +||.+.+..++.++........++++.++
T Consensus 16 ~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~ 95 (400)
T PF03825_consen 16 FAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLF 95 (400)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34455668888889999999999999999999999999999999999986 57777788888888777778888999888
Q ss_pred HHHHHHHHhhhhhhhhhhhhhheecCCC--cchhHHHHHHHHHHHHHHH-HHHhhhhhhh---HHHHHHhHHHHHHHHhh
Q 015963 143 MGRLLEGFGVGVISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIML-AYLLGLFVNW---RVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~-~~~i~~~~~w---~~~f~~~~~~~~~~~~~ 216 (397)
+.-++..+......|...++..+...++ +-|+.-.+-+.++.++... +..+.+..++ .+.+++.+...++....
T Consensus 96 ~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~ 175 (400)
T PF03825_consen 96 VIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF 175 (400)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887776522 2233322233333333221 1223333322 24555655555444444
Q ss_pred hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHh
Q 015963 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (397)
Q Consensus 217 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (397)
.+.+|+.|+.... .++.++....+..+++|++.....++...+...
T Consensus 176 ~l~lp~~~~~~~~-------------------------------~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~--- 221 (400)
T PF03825_consen 176 ALFLPKTPPKRSA-------------------------------KESVKKLLGLDALKLLKNPRFLVFLLAAFLIGI--- 221 (400)
T ss_pred HHhCCCCcccccc-------------------------------CCCcccccchHHHHHhcCccHHHHHHHHHHHHH---
Confidence 5567776520000 000011112233457777665544444333332
Q ss_pred hhhHHHHHhHHHHHhhcC-CCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 297 SGINGVLFYSSNIFANAG-ISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g-~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
.......|.+.++++.| .+... ....+..+..++.-...+++.+|+|.|+++.++....++=..+++.
T Consensus 222 -~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 222 -SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred -HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 24455667777788877 44333 4445666788888899999999999999999888887777666654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-13 Score=128.42 Aligned_cols=248 Identities=13% Similarity=0.060 Sum_probs=159.6
Q ss_pred HHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh----hcchhHHH-HHHHHHHHHHHHHHhhcc------hhHH
Q 015963 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGSLM-IAAVPNIIGWLIISFSKD------SSFL 141 (397)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~-~~~~l~~~~~~~~~~~~~------~~~l 141 (397)
...+.+.+|+++..+|.+..+.-+--++..|+.|+++|| +||||..+ ++.+..+++.+++-..++ ...+
T Consensus 33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~ 112 (460)
T PRK11462 33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA 112 (460)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 334667789999999999999999999999999999995 79876655 566777777776655543 3345
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecC-CCcchhHHHHHHHHHHHHHHHHHHhhhh----h-------hhHHHHHHhHHH
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLF----V-------NWRVLAVLGVLP 209 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~----~-------~w~~~f~~~~~~ 209 (397)
.+...+..++.........++..|..+ +++|++..++...+..+|..+++.+... . +|+....+.+++
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii 192 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV 192 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 566777788888888888899999986 7889999999888888877666554321 1 477666666665
Q ss_pred HHHHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHH
Q 015963 210 CTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (397)
Q Consensus 210 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (397)
.++...+ ....+|.++. +.++.+.+...+..++++.++......
T Consensus 193 ~~i~~~i~~~~~kE~~~~-----------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~~~ 237 (460)
T PRK11462 193 AFMMLAFCFFTTKERVEA-----------------------------------PPTTTSMREDLRDIWQNDQWRIVGLLT 237 (460)
T ss_pred HHHHHHHHHhcceeccCC-----------------------------------CccCCCHHHHHHHHhCChHHHHHHHHH
Confidence 5444433 3334554210 000111223445556665555443333
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 015963 289 GLLVLQQLSGINGVLFYSSNIFANAGISSSN-VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAA 358 (397)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~ 358 (397)
.+.............+|..+++ +..... .......+..+++.++++++.||+++|+....+.....+
T Consensus 238 ~~~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 238 IFNILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HHHHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 3333322222223333333332 222222 344566778888999999999999999887655444333
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-15 Score=137.78 Aligned_cols=300 Identities=17% Similarity=0.198 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 015963 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (397)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~ 129 (397)
..+.+.++..+..++..+.+...+.++++.|+++.++.|++.+.+-++..+...+..+..-|.-|-|.+-.|.++.++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 44555666667788877888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh--------------------c---------------------------c----hh-HHHHHHHHHHHhhhhhhh
Q 015963 130 LIISFS--------------------K---------------------------D----SS-FLFMGRLLEGFGVGVISY 157 (397)
Q Consensus 130 ~~~~~~--------------------~---------------------------~----~~-~l~~~r~l~G~~~g~~~~ 157 (397)
+++++- + + ++ .++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 998762 0 0 22 566789999999999999
Q ss_pred hhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----------------------hhHHHHHHhHHHHHHHH
Q 015963 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------------------NWRVLAVLGVLPCTLLI 214 (397)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----------------------~w~~~f~~~~~~~~~~~ 214 (397)
.+.+|+-|...+++-+..+|+......+|+++|.++++.. .|..-|++.+.+.++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988654 37778888888887777
Q ss_pred hhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHH
Q 015963 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (397)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (397)
+.++++|...+...++ .+ .+..+..+.++.. .. .+......-++-+...++++++ +++++..+....
T Consensus 337 ~p~f~fPk~lp~~~~~---~~-~~~~~~~k~~~~~-~~----~~~~~~~~ikdfp~s~~~ll~N----~if~~~~l~~~~ 403 (735)
T KOG3626|consen 337 VPLFFFPKELPKSQKR---KR-ARDLHVLKTESGG-AK----SDKTFGKKIKDFPKSIKRLLSN----PIFMLVVLASVI 403 (735)
T ss_pred HHHHhCcccCcccccc---ch-hhhhccccccccc-cc----CCcchhhhHHHHHHHHHHHhcC----chHHHHHHHHHH
Confidence 7667776553211110 00 0000000000000 00 0000000011223344555555 445566666666
Q ss_pred HhhhhHHHHHhHHHHHhh-cCCCchh--HHH-HHHHHHHHHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHH
Q 015963 295 QLSGINGVLFYSSNIFAN-AGISSSN--VAT-FGLGVVQVVATGVNTWLMDKAG--RRLLLLISSSGMAASFFL 362 (397)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~-~~~~~~~~~~~~~~~~l~d~~~--~~~~~~~~~~~~~~~~~~ 362 (397)
....+.....|+|.++++ +|.+... ... .+.--+..+|.+++|++++|+. .|....+..+...++++.
T Consensus 404 ~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 404 ESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 667788889999999974 6776555 222 2333455678999999999985 356655555555555544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=129.09 Aligned_cols=252 Identities=12% Similarity=0.125 Sum_probs=149.4
Q ss_pred HHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh----cchhHH-HHHHHHHHHHHHHHHhhc-----c--hhHH
Q 015963 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI----GRKGSL-MIAAVPNIIGWLIISFSK-----D--SSFL 141 (397)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~l~~~~~~~~~~~~-----~--~~~l 141 (397)
+.+.+.+|++..++|.+.++..+..++..++.|+++||. ||||.. ..+.+...+..++....+ + ...+
T Consensus 33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (448)
T PRK09848 33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA 112 (448)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence 467777899999999999999999999999999999996 777755 555555554444432111 1 2224
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecC-CCcchhHHHHHHHH-----HHHHHHHHHHhhhhh------hhHHHHHHhHHH
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLS-----VTIGIMLAYLLGLFV------NWRVLAVLGVLP 209 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~g~~~~~~i~~~~------~w~~~f~~~~~~ 209 (397)
++...+.+++.+...+...++..+..+ +++|.+..+.-..+ ..++..++|.++... +|.....+.+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~ 192 (448)
T PRK09848 113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA 192 (448)
T ss_pred HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 445677788888888877777777764 46788776655433 334555566665432 122111222222
Q ss_pred HHHH-HhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHH
Q 015963 210 CTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (397)
Q Consensus 210 ~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (397)
+++. ++.....||+++. +.++...+..++.+++++.+.......
T Consensus 193 ~~~~~~~~~~~~~e~~~~-----------------------------------~~~~~~~~~~~~~l~~n~~f~~~~~~~ 237 (448)
T PRK09848 193 GMVLYFICFKSTRENVVR-----------------------------------IVAQPSLKISLQTLKRNRPLFMLCIGA 237 (448)
T ss_pred HHHHHHHHHcCcEeccCC-----------------------------------CccCCCHHHHHHHHhCCchHHHHHHHH
Confidence 2222 2223334554210 000111223456677776655544433
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 289 GLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
.+.... ........+.++++ .|.++.. .......+..+++.++.+++.||+++|+.+..+..+..++.+.+.
T Consensus 238 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 238 LCVLIS----TFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred HHHHHH----HHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 333332 22333344444443 3443333 222223456677899999999999999999999888777766554
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-17 Score=154.70 Aligned_cols=301 Identities=16% Similarity=0.157 Sum_probs=3.0
Q ss_pred HHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 015963 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (397)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~ 134 (397)
.++..+......+.....++.+++.|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.+++++++++
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 33344445667777888899999999999999999999999999999999999999988889999999999999988764
Q ss_pred hc--------------------------------------------------chhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 015963 135 SK--------------------------------------------------DSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (397)
Q Consensus 135 ~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (397)
-+ -+..+++++++.|+|....++.+.+|+-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 10 0246778899999999999999999999
Q ss_pred eecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--------------------------hhHHHHHHhHHHHHHHHhhhc
Q 015963 165 EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------NWRVLAVLGVLPCTLLIPGLF 218 (397)
Q Consensus 165 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------------------~w~~~f~~~~~~~~~~~~~~~ 218 (397)
|..++++-+..+|+..+...+|+.+|.++++.. .|..-|++.+++.++..+..+
T Consensus 168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~ 247 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF 247 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888543 255556666666555555555
Q ss_pred cccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhh
Q 015963 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (397)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 298 (397)
++|++-+...+..+.++.++ .+.+..+.+...+.++ .+......++-....++++++ +.+++..+........
T Consensus 248 ~FPk~lp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~df~~~l~~Ll~N----p~f~~~~la~~~~~~~ 320 (539)
T PF03137_consen 248 FFPKKLPGTSERQEEKESSE--RKEEDSDKDSFKDPKS-KKSFGKSIKDFPKALKRLLTN----PVFMCLILAGVFESFI 320 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCccCCCcccccchhhhhh--cchhhhhhhccccccc-ccchhhhhhhHHHHHHHHhcC----hHHHHHHHHHHHHHHH
Confidence 55544221100000000000 0000000000000000 000001112222344445555 4455555666666666
Q ss_pred hHHHHHhHHHHHhh-cCCCchh---HHHHHHHHHHHHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHH
Q 015963 299 INGVLFYSSNIFAN-AGISSSN---VATFGLGVVQVVATGVNTWLMDKAG--RRLLLLISSSGMAASFFL 362 (397)
Q Consensus 299 ~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~~~~~~~~~~~~~l~d~~~--~~~~~~~~~~~~~~~~~~ 362 (397)
...+..|.|.+++. ++.++.. +.....-.+.++|.+++|++.+|++ .|..+....+...++.+.
T Consensus 321 ~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~ 390 (539)
T PF03137_consen 321 VSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL 390 (539)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 78888999999874 5766554 2223333466789999999999985 355555555555555544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-13 Score=115.16 Aligned_cols=264 Identities=13% Similarity=0.074 Sum_probs=165.3
Q ss_pred cCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 015963 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (397)
Q Consensus 68 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 147 (397)
..+|..-.+-+++|.+..|++.+....+....+..++.|.++||+|||+.-+...++.+++++ +-..++++.++++|++
T Consensus 52 LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvl 130 (354)
T PF05631_consen 52 LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVL 130 (354)
T ss_pred hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHH
Confidence 334666667788999999999999999999999999999999999999999999999999995 5566899999999999
Q ss_pred HHHhhhhhhhhhhhhh-heec----CCCcchhHHHHHH-HHHHHHHHHHHHhhhhh----h--hHHHHHHhHHHHHHHHh
Q 015963 148 EGFGVGVISYTVPVYI-AEIA----PQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----N--WRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----~--w~~~f~~~~~~~~~~~~ 215 (397)
.|++.+..+.+-.++. .|+- |++..+..++... ...++-.+.+.+++..+ + -..+|....+..++..+
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~ 210 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAV 210 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999887765 3442 2222222232222 22233334444444443 3 35788887776666544
Q ss_pred h-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHH
Q 015963 216 G-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (397)
Q Consensus 216 ~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 294 (397)
. ....+|++....++ .+..+.....++.+.+++ +.+........+
T Consensus 211 ~I~~~W~ENyg~~~~~-------------------------------~~~~~~~~~a~~~i~~d~---ril~LG~~qslF 256 (354)
T PF05631_consen 211 LILKTWPENYGDTSSS-------------------------------SSLSGSFREAWRAILSDP---RILLLGLIQSLF 256 (354)
T ss_pred HHHhcccccCCCcccc-------------------------------cchHHHHHHHHHHHHcCc---hhHHHHHHHHHH
Confidence 3 33445653200000 000001112233444433 444555556666
Q ss_pred HhhhhHHHHHhHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHH
Q 015963 295 QLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMD-KAGRRLLLLISSSGMAASFFLVSVA 366 (397)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (397)
....+.....|.|.+-.+..--+...+...+.++.++|+.+..++.. +......+...+.+..+++.+-.+.
T Consensus 257 E~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~pv~~ 329 (354)
T PF05631_consen 257 EGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAIPVVT 329 (354)
T ss_pred HHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667778887652211113336777777888888888865544 4444455555555555555444443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=114.89 Aligned_cols=133 Identities=23% Similarity=0.375 Sum_probs=117.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCC
Q 015963 90 FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ 169 (397)
Q Consensus 90 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 169 (397)
..+.+.++..+++++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+...+++.|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCh
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhh-ccccC
Q 015963 170 NMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL-FFIPE 222 (397)
Q Consensus 170 ~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~-~~~~e 222 (397)
++|++..++.+....+|..+++.+.+.+ +|++.+++.++..++..+.. ++.||
T Consensus 83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999888766 79999988877766665443 34454
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=124.10 Aligned_cols=260 Identities=17% Similarity=0.140 Sum_probs=174.7
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh----hcchh-HHHHHHHHHHHHHHHHHhhcc------hhHHHH
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKG-SLMIAAVPNIIGWLIISFSKD------SSFLFM 143 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~l~~~~~~~~~~~~~------~~~l~~ 143 (397)
.+.+.+|+++..+|.+..+.=+--++.-|+.|.++|| +|||| .++.+.+-.++.+.++-.+++ ....++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 4666789999999999999999999999999999994 88855 555677889998888888773 345566
Q ss_pred HHHHHHHhhhhhhhhhhhhhheecC-CCcchhHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHhHHHHH
Q 015963 144 GRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLGVLPCT 211 (397)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----------~w~~~f~~~~~~~~ 211 (397)
...+.+++.........++..|..+ ++||.+..++-+.+..+|..+...+...+ ||+...++.+++++
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 7889999999999999999999985 78899999999988888866554333222 67777777777666
Q ss_pred HHHhh-hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHH
Q 015963 212 LLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (397)
Q Consensus 212 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 290 (397)
+..+. ++-.+|.+... +...+..+.+.+..+..+++++.+.......++
T Consensus 198 i~~l~~~~~v~ER~~~~------------------------------~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~ 247 (467)
T COG2211 198 ILLLFCFFNVKERVVET------------------------------QPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLL 247 (467)
T ss_pred HHHHHHHHHhhcccCcc------------------------------ccCcccccccHHHHHHHHHccchHHHHHHHHHH
Confidence 66554 33456653200 000000112222334456666655554443333
Q ss_pred HHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 015963 291 LVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAF 367 (397)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (397)
.............+|....+ |.++.. ..........+++.++...+.+|+|+|++...+.++.+++.+.+.+..
T Consensus 248 ~~~~~~i~~s~~~yy~~y~l---g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~ 323 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVL---GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP 323 (467)
T ss_pred HHHHHHHHhhhhheeEEEEc---CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence 33322222222233332222 443333 344445566666789999999999999999999888888887766543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-14 Score=126.73 Aligned_cols=270 Identities=17% Similarity=0.134 Sum_probs=145.8
Q ss_pred cccccCcccHHHHHH-hhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH--HHHH-HHHHhh----
Q 015963 64 FTCGYSSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN--IIGW-LIISFS---- 135 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~--~~~~-~~~~~~---- 135 (397)
+..+...|..|...+ +.|+|.+++|.+.++..+...+.+|+.|.++||.|.||-++....+. ..+. +...+.
T Consensus 21 f~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~ 100 (412)
T PF01306_consen 21 FIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ 100 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677776555 58999999999999999999999999999999999777655433222 2222 222222
Q ss_pred cchh-HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHH
Q 015963 136 KDSS-FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCT 211 (397)
Q Consensus 136 ~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~~~~ 211 (397)
.|.+ ..+++-...|+......|+..+++.++. ++.+.-.|=.-...++|.+++..+++.+ +-+..|++....++
T Consensus 101 ~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~ 178 (412)
T PF01306_consen 101 SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAI 178 (412)
T ss_dssp TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHH
Confidence 2322 2233333344445555566666655544 2223334444555566666666666655 55678887766655
Q ss_pred HHHhhhc-cccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHH
Q 015963 212 LLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (397)
Q Consensus 212 ~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 290 (397)
+..++.+ .-|+.++.....+.. .+++++...+...++++.+..+...+....
T Consensus 179 il~lll~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g 231 (412)
T PF01306_consen 179 ILLLLLLLLKPDVPPQAEVADAL---------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIG 231 (412)
T ss_dssp HHHHHHHSS---SSSSS-SSTTS---------------------------SS------HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCchhhhhhccc---------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHH
Confidence 5544433 334432210000000 000011112234456666655554443332
Q ss_pred HHHHHhhhhHHHHHhHHHHHhhc----CCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 291 LVLQQLSGINGVLFYSSNIFANA----GISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
... .+.......+.++... +.++.. +......+..++.-.+..++.+|+|.|+.++++..++.+=....+
T Consensus 232 ~~~----~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~ 307 (412)
T PF01306_consen 232 VAA----IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG 307 (412)
T ss_dssp HHH----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh
Confidence 222 2333333344444433 222222 455566778888999999999999999999998888877766655
Q ss_pred HH
Q 015963 365 VA 366 (397)
Q Consensus 365 ~~ 366 (397)
+.
T Consensus 308 ~~ 309 (412)
T PF01306_consen 308 FA 309 (412)
T ss_dssp T-
T ss_pred hh
Confidence 43
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=134.26 Aligned_cols=145 Identities=15% Similarity=0.090 Sum_probs=121.6
Q ss_pred hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhh
Q 015963 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 159 (397)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 159 (397)
.+.+..+.+++.++..++..++.++.|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hhhhheecCCCcchhHHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhh-hccccCCh
Q 015963 160 PVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (397)
Q Consensus 160 ~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~-~~~~~e~~ 224 (397)
..++.|.+|++.|+...+. ++....+|..+++.+.+++ ||+..|.+.++..++..+. ...+++++
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 8999999999998877655 5667788888888888776 8999999877766655443 33444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.3e-14 Score=127.55 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=123.1
Q ss_pred cHH-HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015963 72 TQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (397)
Q Consensus 72 ~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (397)
..| .+++++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.++
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 317 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAI 317 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344 4567789999999999888888888999999999999999998888776666665555567788888888999998
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhccccC
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~~~e 222 (397)
+.|...+....+..|..| ++|+++.++.+....+|..+++.+++.+ +|+..|++.+++.++.++..++.||
T Consensus 318 ~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 318 YIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888777777788889887 5699999998888888888888888765 8999999888887777776666665
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=136.19 Aligned_cols=136 Identities=16% Similarity=0.086 Sum_probs=119.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecC
Q 015963 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAP 168 (397)
Q Consensus 89 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 168 (397)
....+..++..++.++.|+++||+|||++++++.++.++++++.+++++...+++.+++.|++.+...+...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34556678899999999999999999999999999999999999999988888888999999888889999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHHHhhhccccCCh
Q 015963 169 QNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (397)
Q Consensus 169 ~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~~~~~~~~~~~~~~e~~ 224 (397)
.+.|++++|+.+....+|.+++|.+++.+ +...+|++.++..++..++..++||+.
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999998765 445677777777776666666779874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-12 Score=112.61 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=126.3
Q ss_pred ccHHHHHHhhc----CCchhhHHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhhc--chhHHHH
Q 015963 71 PTQAEIISDLK----LTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFM 143 (397)
Q Consensus 71 ~~~~~i~~~~~----~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~l~~ 143 (397)
++.-++..+++ .++++..-+.++|..-.-+...++|+++|| +|+|+.+..|.++..+|.++.+.+. +...+.+
T Consensus 43 iL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i 122 (498)
T COG3104 43 ILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYI 122 (498)
T ss_pred HHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 44455666666 999999888888888888999999999999 5999999999999999999999984 7889999
Q ss_pred HHHHHHHhhhhhhhhhhhhhheecCCCc--chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhh
Q 015963 144 GRLLEGFGVGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (397)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~ 217 (397)
+-.+.++|.|..=+...++++|.+|+++ |-..++++..+.++|..++|++.+++ ||+..|...++-..+.++..
T Consensus 123 ~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 123 GLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred HHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998654 55578888888999999999988877 89999998887666655544
Q ss_pred cc
Q 015963 218 FF 219 (397)
Q Consensus 218 ~~ 219 (397)
+.
T Consensus 203 ~~ 204 (498)
T COG3104 203 LL 204 (498)
T ss_pred HH
Confidence 33
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=8e-14 Score=126.96 Aligned_cols=143 Identities=12% Similarity=0.041 Sum_probs=122.5
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHH
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEG 149 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G 149 (397)
..+.+.++++.++++.+++.+.+.++..+++++.|++.||+|||+.+.++.++..++.++..+.++. ..+++..++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 3455667889898899999999999999999999999999999999999999999988888777643 33456678889
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHH
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~ 214 (397)
++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.|.+.++..++.+
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 888888888888999999999999999999999999999999888765 89999988877666543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=127.47 Aligned_cols=151 Identities=10% Similarity=0.072 Sum_probs=126.7
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (397)
..|.+.++.|.+..+.+.+.+.+.++..++.++.|+++||+|||+.+..+.+...++.++....++.+.+.+..++.|++
T Consensus 242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (406)
T PRK11551 242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321 (406)
T ss_pred HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45677778899999999999999999999999999999999999999888777777777777788888888888899998
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHhhhccccC
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~e 222 (397)
.+...+...++..|.+|+++|+++.++.+....+|..++|.+.+.+ +|...++......++..+..+.+.+
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888899999999999999999999999999999999999876 4566666666555555444443333
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=115.74 Aligned_cols=192 Identities=11% Similarity=0.035 Sum_probs=129.9
Q ss_pred HhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---------------
Q 015963 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------- 197 (397)
Q Consensus 133 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------- 197 (397)
+..++++.++++-++.|.|.+...+..+.++++..++|++.+.+++.+..+++|..++|.+++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999998632
Q ss_pred -----hhHHHHHHhHHHHHHHHhhhcc--ccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhh
Q 015963 198 -----NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270 (397)
Q Consensus 198 -----~w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (397)
+|+++|++.+...++..+.+.+ +||.++ ++.+ +..+++..
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~------------------------~~~~~~~~---- 131 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVA------------------------RVSSGDTT---- 131 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccc------------------------cccccccc----
Confidence 5888888665544444333333 344311 0000 00000000
Q ss_pred hHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh---cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhch
Q 015963 271 RFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN---AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (397)
Q Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~ 345 (397)
..++.++++..+ ...+..+...........|.+.++.+ .|.++.+ ........+.++|+++++++.||+++
T Consensus 132 ~~~~~~~~~~~~----l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~ 207 (310)
T TIGR01272 132 QKTSAFQFTHLV----LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQ 207 (310)
T ss_pred chhhHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 011223322222 22233333333455667778888864 3676555 55667788889999999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 015963 346 RLLLLISSSGMAASFF 361 (397)
Q Consensus 346 ~~~~~~~~~~~~~~~~ 361 (397)
|+.+..+..+..++.+
T Consensus 208 ~~~l~~~~~l~~~~~~ 223 (310)
T TIGR01272 208 GRYLAFNAFLAVLLSI 223 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888777666665553
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=126.79 Aligned_cols=153 Identities=14% Similarity=0.257 Sum_probs=124.0
Q ss_pred cHHHHHHhhcCCc--------hhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc----chh
Q 015963 72 TQAEIISDLKLTI--------SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DSS 139 (397)
Q Consensus 72 ~~~~i~~~~~~s~--------~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~----~~~ 139 (397)
..+...++.|.++ ++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... +++
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~ 309 (418)
T TIGR00889 230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYA 309 (418)
T ss_pred hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 3344555555443 5679999999999999999999999999999999999999998877776642 245
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHH-HHHHHHHHHHHHhhhhh----------hhHHHHHHhHH
Q 015963 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----------NWRVLAVLGVL 208 (397)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----------~w~~~f~~~~~ 208 (397)
.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ...++|..+||.+++.+ ||+..|.+.++
T Consensus 310 ~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~ 389 (418)
T TIGR00889 310 LLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAG 389 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 67778999999999888998999999999999999999997 67888999999888765 38999988877
Q ss_pred HHHHHHh-hhccccCCh
Q 015963 209 PCTLLIP-GLFFIPESP 224 (397)
Q Consensus 209 ~~~~~~~-~~~~~~e~~ 224 (397)
..++..+ ..+++||+.
T Consensus 390 ~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 390 YIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 7666544 455567663
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=114.04 Aligned_cols=243 Identities=19% Similarity=0.253 Sum_probs=158.9
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHH-HHHHHHHHHHHHhh-c-chhHHHHHHHHHHHhhhhhhhhhhh
Q 015963 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA-AVPNIIGWLIISFS-K-DSSFLFMGRLLEGFGVGVISYTVPV 161 (397)
Q Consensus 85 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~l~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (397)
+..++..++..+..++..|+.|.++|+-|+||.++.. .++..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999987766654 55555666666664 3 3444445566666788888888999
Q ss_pred hhheecCCCcc--------------------------hhHHHHHHHHHHHHHHHHHHhhhhh------------hhHHHH
Q 015963 162 YIAEIAPQNMR--------------------------GSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLA 203 (397)
Q Consensus 162 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~i~~~~------------~w~~~f 203 (397)
++.|..+++++ ++..+.-.....+|.++.-++.-.+ +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 8888887777778877776655332 247778
Q ss_pred HHhHHHHH-HHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchh
Q 015963 204 VLGVLPCT-LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (397)
Q Consensus 204 ~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (397)
.+.++.-+ ..+...+++||.|+....+...+.... .-++-..+++++.+.+
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~-------------------------g~~~l~~t~k~~~~~~--- 281 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRF-------------------------GFKRLWRTFKEIRKLR--- 281 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHH-------------------------HHHHHHHHHHHHHhCh---
Confidence 77776544 445567778887641000000000000 0001112233333332
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchh--HHHHHHHHHH
Q 015963 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRR--LLLLISSSGM 356 (397)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~--~~~~~~~~~~ 356 (397)
-+..+++.++....+...+......+.+ +.|++..+ ...+...+.+++|+++.+++.||+|.| +.+..+....
T Consensus 282 -~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 282 -QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 2333344444444455566666555555 56998877 556677899999999999999999988 6766665554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-13 Score=121.28 Aligned_cols=147 Identities=15% Similarity=0.218 Sum_probs=122.8
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhh
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (397)
.+.+++|.++.+.+++.+.......++.++.|++.||+|||+.+..+.++..+........++.+.+.+.+++.|++.+.
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999988888888888999999999999999999888777776666666677888888889999999988
Q ss_pred hhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhccccC
Q 015963 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (397)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~~~e 222 (397)
..+....++.|..|+ +|+++.++.+....+|..++|.+++.+ ||+..|++.++..++..+...+++|
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 888888899998874 567999999988889999998888765 8999999888887777666555543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-13 Score=121.72 Aligned_cols=156 Identities=21% Similarity=0.328 Sum_probs=138.3
Q ss_pred cccccCcccHHHHHHhh-cCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchh-HHHHHHHHHHHHHHHHHhhcchhHH
Q 015963 64 FTCGYSSPTQAEIISDL-KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG-SLMIAAVPNIIGWLIISFSKDSSFL 141 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~~~-~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~l~~~~~~~~~~~~~~~~l 141 (397)
..........|.+.++. |.+..+.++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 268 (352)
T cd06174 189 FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALL 268 (352)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33344445566666554 889999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhh
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~ 217 (397)
.+..++.|++.+...+...+++.|..|+++|++.+++.+....+|..+++.+.+.+ +|++.+++.+++.++..+..
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998766 89999999988887776654
Q ss_pred cc
Q 015963 218 FF 219 (397)
Q Consensus 218 ~~ 219 (397)
++
T Consensus 349 ~~ 350 (352)
T cd06174 349 LL 350 (352)
T ss_pred ee
Confidence 43
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-11 Score=106.39 Aligned_cols=263 Identities=16% Similarity=0.116 Sum_probs=171.5
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhc-----chhHHHH-HHHHHHHHHHHHHhh-----c-------
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMI-AAVPNIIGWLIISFS-----K------- 136 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~-~~~l~~~~~~~~~~~-----~------- 136 (397)
.+..|++++..-.+.+.+...+... ..+.+|+.+|+.+ ||..+++ |.++...+..+..++ .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 4677899999999999888877665 6899999999999 8877765 466666655554442 2
Q ss_pred ch--h--HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhH
Q 015963 137 DS--S--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGV 207 (397)
Q Consensus 137 ~~--~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~ 207 (397)
+. + ...+...+.|+|.+.......+++.|..|+++|+++.++......+|.+++..+.+.+ .-|..-.+..
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 12 2 3344578889999999999999999999999999999999999999999998888766 2232222222
Q ss_pred H--HHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHH
Q 015963 208 L--PCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (397)
Q Consensus 208 ~--~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (397)
. ..+..-++..+-.|.+.... .+..++++.+....++++..++.-++++
T Consensus 164 ~a~i~~~l~~ia~wg~E~r~~~~-----------------------------~~~~~~~~~~f~~a~~~~~~~~~a~~f~ 214 (403)
T PF03209_consen 164 VALIALLLNLIALWGQEPRRSRR-----------------------------AAAAERPRPPFREAWRQVWASPQARRFF 214 (403)
T ss_pred HHHHHHHHHHHHHHhcccCCccc-----------------------------ccCCCCCCccHHHHHHHHHhCCChhHHH
Confidence 2 22111112222223211000 0011122233345667777777766666
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHH
Q 015963 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMD-KAGRRLLLLISSSGMAASFFL 362 (397)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d-~~~~~~~~~~~~~~~~~~~~~ 362 (397)
....+.....+.--..+-.|.-+.+ |++..+ ..+...+.+.++|-...+++.. |.++++....++....+++.+
T Consensus 215 ~fl~l~t~a~~~QD~iLEPygg~Vf---gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l 291 (403)
T PF03209_consen 215 VFLFLGTLAFFMQDVILEPYGGEVF---GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL 291 (403)
T ss_pred HHHHHHHHHHHhhHHHcCCchhHHc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 6555444433332333333333333 777666 5666778888888888887766 677788888888888888887
Q ss_pred HHHHHHhh
Q 015963 363 VSVAFFLE 370 (397)
Q Consensus 363 ~~~~~~~~ 370 (397)
+...-..+
T Consensus 292 ii~a~~~~ 299 (403)
T PF03209_consen 292 IILAGPLG 299 (403)
T ss_pred HHHHHhcc
Confidence 77665443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-13 Score=121.82 Aligned_cols=150 Identities=13% Similarity=0.189 Sum_probs=123.8
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (397)
..+.+.++.|. ++.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++....++.+.+++.+++.|++
T Consensus 238 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 238 FITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred HHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444455555 3456677888899999999999999999999999999999898888888888888888899999999
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhccccCC
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES 223 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (397)
.+...+.....+.|..|+++|+++.++.+....+|..+++.+.+.+ ||++.+++.++..++.++..++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9988888888888999999999999999999999988887777665 89999998887777766655555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=118.49 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=123.9
Q ss_pred ccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015963 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (397)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (397)
...|.+.+|+|.++.+.|.+.++..++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.+.+.|+
T Consensus 226 ~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~ 305 (382)
T TIGR00902 226 GFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCG 305 (382)
T ss_pred HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence 34555567799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHH-HHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~ 216 (397)
..+...+....++.+. |+++|++..++++ ...++|..+++.+++++ ++ ..|++.+++.++..+.
T Consensus 306 ~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 306 TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999999999999998 8889999999876 56788888888888877 54 4455555555554433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=119.05 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=121.8
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (397)
..|.+.++.+.+ +.++..+.+.++..+++++.|++.||+|+||.+..+..+.+++.++..+.++.+.+++..++.|++
T Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 315 (392)
T PRK12382 238 FVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAG 315 (392)
T ss_pred HHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344444555554 355667778888899999999999999999999999999999988888888888888899999999
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhh
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~ 217 (397)
.+...+...+.+.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.|.+.++..++..+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 9988888888889999999999999999999999999999888766 89999998887777665543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=121.23 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=122.7
Q ss_pred cccHHHHHHhhcCCch----hhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015963 70 SPTQAEIISDLKLTIS----EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~~----~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r 145 (397)
.+..+.+.++.+.+.+ ..+.+.+++.++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILR 318 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3445555444432322 245666777888889999999999999999999999888888888888888888888999
Q ss_pred HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhc
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~ 218 (397)
++.|++.+...+...+.+.+..++++|++.+++.+....+|..+||.+++.+ +|++.|++.++..++..+..+
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988776 899999998887777655443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-10 Score=101.78 Aligned_cols=278 Identities=14% Similarity=0.156 Sum_probs=175.8
Q ss_pred HHHHHHh-hcCCchhhH-HHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015963 73 QAEIISD-LKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (397)
Q Consensus 73 ~~~i~~~-~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (397)
.|.+.+. .|++.+|+. -+.-...-++....++...+.|..|.|++++++.+...+...+..+.++...+-+..+.-|+
T Consensus 27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~ 106 (412)
T PF01770_consen 27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGL 106 (412)
T ss_pred hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence 3445544 788888764 56666777888899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhHHHHHHHHhhhccccCCh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~f~~~~~~~~~~~~~~~~~~e~~ 224 (397)
+.+. ..+..+++-...|+++--++.+...++.-+|..++.++++.+ +++...++......++.+..+++|..+
T Consensus 107 ~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 107 ATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8855 677789999999988888899988888888888888888766 566777777666666666667788765
Q ss_pred hHHHhcCCHHHHHHHHHHHhCCCchhHHHHH-HHHHHHhhhcchhhhhHHHHHh---ccchhhHHHHHHHHHHHHhhhhH
Q 015963 225 RWLAKMGMTEDFESSLQVLRGFDTDISIEVN-EIKRSVASSSRRTAIRFAELKR---KRYWFPLMIGIGLLVLQQLSGIN 300 (397)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~ 300 (397)
+...-+++.++... ..+.+.++.+...+.. +.++..+..+...+..++.+.+ .-...+.++...+.+....+++.
T Consensus 186 ~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~ 264 (412)
T PF01770_consen 186 RSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYY 264 (412)
T ss_pred cccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHH
Confidence 53321111111000 0000000000000000 0000001111111122222222 22233445555666667777777
Q ss_pred HHHHhHHHHHhhcCCC-chh----HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 015963 301 GVLFYSSNIFANAGIS-SSN----VATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (397)
Q Consensus 301 ~~~~~~~~~~~~~g~~-~~~----~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~ 352 (397)
-+..|...+.++..-+ +.. ..-....+.+.++.+..|++..++.+...+..+
T Consensus 265 qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~ 321 (412)
T PF01770_consen 265 QVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALG 321 (412)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHH
Confidence 7888888777766221 111 334455566667778888885555554443333
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-12 Score=122.19 Aligned_cols=146 Identities=11% Similarity=0.023 Sum_probs=120.5
Q ss_pred cccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh--cchhHHHH--HHHHHHHHHHHHHhhcchhHHHHHH
Q 015963 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMI--AAVPNIIGWLIISFSKDSSFLFMGR 145 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~r 145 (397)
...+|.+.+++|.+..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.+++.++....++++.+++.+
T Consensus 261 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~ 340 (455)
T TIGR00892 261 IIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3455667778899999999999999999999999999999973 34443333 3444455556667788899899999
Q ss_pred HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHh
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~ 215 (397)
++.|++.+...+...+++.|.+|++++++..++.+....+|..+||.+++.+ +|++.|++.++..++..+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999866 599999888876655543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-12 Score=119.54 Aligned_cols=149 Identities=13% Similarity=0.097 Sum_probs=108.1
Q ss_pred cccHH-HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH--HHhhcchhHHHHHHH
Q 015963 70 SPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI--ISFSKDSSFLFMGRL 146 (397)
Q Consensus 70 ~~~~~-~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~--~~~~~~~~~l~~~r~ 146 (397)
....| .+++++|.+..+.++..+.+.++..++.++.|+++||+|||+.+.....+..++..+ ....++...+.+.++
T Consensus 278 ~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (467)
T PRK09556 278 DNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLF 357 (467)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455 456779999999999999999999999999999999999998877655444443322 233456666777888
Q ss_pred HHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHH-HHHHHHHhhhhh----------------hhHHHHHHhHHH
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----------------NWRVLAVLGVLP 209 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----------------~w~~~f~~~~~~ 209 (397)
+.|+..............|.+|++.|+.+.|+.+....+ |..++|.+.+.+ +|+..|++..+.
T Consensus 358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~ 437 (467)
T PRK09556 358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIA 437 (467)
T ss_pred HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHH
Confidence 888654333333345677999999999999999887775 656665555333 589999887666
Q ss_pred HHHHHhhhc
Q 015963 210 CTLLIPGLF 218 (397)
Q Consensus 210 ~~~~~~~~~ 218 (397)
.++..+..+
T Consensus 438 ~~~~~~~~~ 446 (467)
T PRK09556 438 AIGCICLMA 446 (467)
T ss_pred HHHHHHHHH
Confidence 666555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=118.25 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=105.2
Q ss_pred cccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhH--HH------HHHHHHHHHHHHHHhhcchhH
Q 015963 70 SPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS--LM------IAAVPNIIGWLIISFSKDSSF 140 (397)
Q Consensus 70 ~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~--~~------~~~~l~~~~~~~~~~~~~~~~ 140 (397)
....|. +.+++|.+..+.+++.+...++..++.++.|+++||+|||+. .. .+.++..+........++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (399)
T TIGR00893 235 LTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYA 314 (399)
T ss_pred HHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 344444 456789999999999999999999999999999999999961 11 111111111111122234444
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHHhHHHHHHHHh
Q 015963 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~f~~~~~~~~~~~~ 215 (397)
......+.+.+.+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+ + |++.+++.++..++..+
T Consensus 315 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~ 393 (399)
T TIGR00893 315 ALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGAL 393 (399)
T ss_pred HHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHH
Confidence 4444444444444 7888899999999999999999999999999999999988776 6 99998887776665544
Q ss_pred h
Q 015963 216 G 216 (397)
Q Consensus 216 ~ 216 (397)
.
T Consensus 394 ~ 394 (399)
T TIGR00893 394 S 394 (399)
T ss_pred H
Confidence 3
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=118.37 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=109.3
Q ss_pred ccHHHH-HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH--HHHHh--hcchhHHHHHH
Q 015963 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW--LIISF--SKDSSFLFMGR 145 (397)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~--~~~~~--~~~~~~l~~~r 145 (397)
...|.+ ++++|.+.++.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +.... .++.+.+.+..
T Consensus 240 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (394)
T TIGR00883 240 TYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLV 319 (394)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 445544 47789999999999999999999999999999999999998876554444333 22222 24666777788
Q ss_pred HHHHHhhhhhhhhhhhhhheecCCCcchhHHHH-HHHHHHHHHHHHHHhhhhh----h-hHHHHHHhHHHHH
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCT 211 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~-w~~~f~~~~~~~~ 211 (397)
++.|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+ + |++.++..+...+
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 999999989999999999999999999999887 4566677888888888766 5 8877766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-12 Score=115.09 Aligned_cols=151 Identities=15% Similarity=0.074 Sum_probs=122.5
Q ss_pred ccHHHHH-HhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015963 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (397)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 149 (397)
...|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 305 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLG 305 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3455444 678999999999999999999999999999999999999999888877777777777788877777888999
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhccccC
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~~~e 222 (397)
++.+..++...++..|..+ +++++..+.......+|..++|.+.+.+ ||+..++..++..++..+....+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 306 FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9888888888888888765 5567778888888889999998888766 8998888877776666555544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=116.37 Aligned_cols=149 Identities=13% Similarity=0.167 Sum_probs=110.9
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh---h-cchhHHHHHHHHHHH
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---S-KDSSFLFMGRLLEGF 150 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~---~-~~~~~l~~~r~l~G~ 150 (397)
.+.+++|.+.+....+..+......++.++.|+++||+|||+.+..+.++..++.+.... . ++.+.+++..++.|+
T Consensus 276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456778888877666666677777889999999999999999998887766655443322 2 234444556677788
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHH-HHHHHHHHHHHHHhhhhh------hhHHHHHHhHHHHHHHHhhhccccCC
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPES 223 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~------~w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (397)
+.+...+...+++.|.+|.+.|+.+.++. +.+..+|..++|.+.+++ +|+..+.+.++..++..+..+.++|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 88888888899999999999998888884 444557888888887765 48888887777777766655556664
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=118.06 Aligned_cols=154 Identities=12% Similarity=0.084 Sum_probs=126.9
Q ss_pred ccHHHHHHh-hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015963 71 PTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (397)
Q Consensus 71 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 149 (397)
...|.+.++ +|.+..+.+++.+.+.++..++.++.+++.||.++|+.+..+.++..++.++..+.++.+.+.++.++.|
T Consensus 244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (417)
T PRK10489 244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG 323 (417)
T ss_pred HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 345656555 8999999999999999999999999999999988888888888888888888888888888888899999
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHH-HHhhhccccCCh
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL-LIPGLFFIPESP 224 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~-~~~~~~~~~e~~ 224 (397)
++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.+.+ |++..+++.+...++ .++....+||.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 999888888888999999999999999999988888888888888776 667777665554443 444555566653
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=113.20 Aligned_cols=145 Identities=12% Similarity=0.116 Sum_probs=118.2
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (397)
.+|.+.++.|.+.++.++..+.+.++..+++++.|++.||+|+|+.+..+..+..++.+... + ........++.|++
T Consensus 222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~ 298 (381)
T PRK03633 222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAA 298 (381)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHH
Confidence 46767777899999999999999999999999999999999999999888888777665443 2 23344567888888
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhcc
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~ 219 (397)
.....|...+++.|..|+++++...+..+....+|..+||.+++.+ +|++.|.+.+...++..+..+.
T Consensus 299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 8788899999999999888888888888888899999999888876 7999999887777665544443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-12 Score=117.13 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=107.7
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH-HHHhhcchhHHHHHHHHHHHhhh
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IISFSKDSSFLFMGRLLEGFGVG 153 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g 153 (397)
.+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+..+.++..+..+ +....++.+.+.+..++.|+..+
T Consensus 264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (405)
T TIGR00891 264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ 343 (405)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence 45667899999999999999999999999999999999999999888776544333 33344566667777788887777
Q ss_pred hhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHH
Q 015963 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVL 205 (397)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~f~~ 205 (397)
...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+ | |+..+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 77788889999999999999999999999999999999998877 4 6554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=117.12 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=107.0
Q ss_pred cccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015963 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 149 (397)
....|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+......+......++....++.+.+++..++.|
T Consensus 270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 349 (398)
T TIGR00895 270 TNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349 (398)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 34456788889999999999999999999999999999999999995554444443333333333567777888899999
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
++.+...+...+++.|.+|+++|+++.++......+|..++|.+++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 350 FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999999999999999999999999988753
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=101.82 Aligned_cols=249 Identities=14% Similarity=0.218 Sum_probs=163.8
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHhhcc--h-hHHHHHHHHHHHhhhhhhhhhh
Q 015963 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISFSKD--S-SFLFMGRLLEGFGVGVISYTVP 160 (397)
Q Consensus 85 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~l~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~~~ 160 (397)
+..+...++..+..++-+|+.|.++|+.|+||... +...+..+..++..++++ + +..++.-.+..++.........
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 45788899999999999999999999999766554 556666666666666654 4 4445568888899999999999
Q ss_pred hhhheecCCCcchhHHHHHHHHHHHHHHHHHHhh------h----------------hhhhHHHHHHhHHHHHHH-Hhhh
Q 015963 161 VYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG------L----------------FVNWRVLAVLGVLPCTLL-IPGL 217 (397)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~------~----------------~~~w~~~f~~~~~~~~~~-~~~~ 217 (397)
+++.+..++++-++..+.......+|..+.-++. + ...-|..+.+.++..++. +..+
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~ 217 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI 217 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence 9999999988878777665555555555443332 1 014677777777655554 4455
Q ss_pred ccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhh
Q 015963 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (397)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 297 (397)
+.+++.++-. .+.. +...+.-++-..+++++.+++..... .+..+...-
T Consensus 218 ~~v~~~~~~~---~~~~------------------------~~l~~g~k~L~~t~k~i~~~~~i~~F----LiA~~~~~D 266 (438)
T COG2270 218 LNVHDAEKIS---SPPP------------------------TALRNGFKELKSTFKEIRGRKNLVLF----LIARFFYID 266 (438)
T ss_pred hccccccccc---ccch------------------------HHHHHHHHHHHHHHHHHhcccchHHH----HHHHHHHHh
Confidence 6666654300 0000 00000011123345555555443333 333344444
Q ss_pred hhHHHHHhHHHHHh-hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 015963 298 GINGVLFYSSNIFA-NAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVS 364 (397)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (397)
+.+.+......+-. +.|+++.+ .......+.+++|+++.|++.||+|.|+++..+.++..+.++...
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence 55666666666665 67998877 555566889999999999999999999998888777766665443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-12 Score=117.31 Aligned_cols=155 Identities=15% Similarity=0.055 Sum_probs=113.9
Q ss_pred cccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc--ch-h-HHHHHH
Q 015963 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DS-S-FLFMGR 145 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~-~-~l~~~r 145 (397)
....|.+.++.|.+.....+......+...++.++.|+++||+|||+.++.+.++.+++.++.+... +. + ....+-
T Consensus 291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3445778888998887777887888889999999999999999999999999999998887766431 21 1 222334
Q ss_pred HHHHHhhhh-hhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHHhHHHHHHHH
Q 015963 146 LLEGFGVGV-ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL----------FVNWRVLAVLGVLPCTLLI 214 (397)
Q Consensus 146 ~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~----------~~~w~~~f~~~~~~~~~~~ 214 (397)
++.+.+.+. ..+....++.|.+|+++|++++++......+|..+++.+.. ..+|++.|++.++..++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 450 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHH
Confidence 444444443 23667899999999999999999998888888777744332 2368888888776666554
Q ss_pred hh-hccccCCh
Q 015963 215 PG-LFFIPESP 224 (397)
Q Consensus 215 ~~-~~~~~e~~ 224 (397)
+. +++.||++
T Consensus 451 ~~~~~~~~e~~ 461 (479)
T PRK10077 451 LFMWKFVPETK 461 (479)
T ss_pred HHHHhccccCC
Confidence 43 44567763
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=111.69 Aligned_cols=147 Identities=13% Similarity=0.055 Sum_probs=112.7
Q ss_pred ccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHh-----hcchhHHHHH
Q 015963 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISF-----SKDSSFLFMG 144 (397)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~l~~~~~~~~~~-----~~~~~~l~~~ 144 (397)
...|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.... .++.+..++.
T Consensus 243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (402)
T TIGR00897 243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII 322 (402)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence 3566777889999999999999999999999999999999999988764 333334443333322 2456677778
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhcc
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~ 219 (397)
.++.|++.+...+. ...+.|.. +++|+++.|+.+....+|..++|.+++.+ ||+..+++.++..++..+..++
T Consensus 323 ~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 323 AIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 88999888776554 45666764 46899999999999999999999888776 8899988888777666554444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=110.90 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=113.4
Q ss_pred HHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH-HHHhhcchhHHHHHHHHHHHh
Q 015963 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IISFSKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~-~~~~~~~~~~l~~~r~l~G~~ 151 (397)
.|.+.+++|.+.++.+++.+.+.++..+++++.|+++||+|||+.. .+..+..++.. +....++.+.+++..++.|++
T Consensus 229 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~ 307 (390)
T PRK03545 229 EPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIA 307 (390)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3445666899999999999999999999999999999999988754 44444444443 345567788888889999999
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhh
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~ 217 (397)
.+...+...+.+.|..| ++|++++++.+....+|..+||++++.+ |++..|++.+++.++..+..
T Consensus 308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 87777777788888766 6889999988888888888888887765 89999998888777765543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=112.07 Aligned_cols=147 Identities=13% Similarity=0.111 Sum_probs=98.1
Q ss_pred ccHHHH-HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh--cchhHH-HHHHHHHHHHHHHHHh--hcchhHHHHH
Q 015963 71 PTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSL-MIAAVPNIIGWLIISF--SKDSSFLFMG 144 (397)
Q Consensus 71 ~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~l~~~~~~~~~~--~~~~~~l~~~ 144 (397)
..+|.+ +++.|.+..+.++....+.++..++.++.|+++||+ |||+.. .....+..++.+.... .++.+...+.
T Consensus 274 ~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 353 (452)
T PRK11273 274 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMAC 353 (452)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHH
Confidence 345554 455789989999999999999999999999999999 555432 2222333333333222 2344444455
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHH-HHHHhhhhh----hhHHHHHHhHHHHHHHHhhh
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-LAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~ 217 (397)
.++.|.+..........+..|.+|+++|+++.|+.+....+|.. .+|.+.+.+ ||+..|++.++.+++.++..
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 354 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 55555543332333345677999999999999999877777654 467766555 89999988877666665543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-10 Score=106.74 Aligned_cols=151 Identities=12% Similarity=0.147 Sum_probs=114.3
Q ss_pred HHHHHHhhcCCchhhHHHHh-hhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---Hhh-cchhHHHHHHHH
Q 015963 73 QAEIISDLKLTISEFSIFGS-LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGRLL 147 (397)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~---~~~-~~~~~l~~~r~l 147 (397)
.|.+.+++|.+.++.++... ...++..++.++.|+++||+|+|+.+.++.++.+++.+.. +.. ++.+.+.+.-++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34456779999999999974 5668999999999999999999998877666555544332 333 355555556666
Q ss_pred HHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhccccCC
Q 015963 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES 223 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (397)
..+..|...+...++..+..+++.+++..++.+....+|..+++.+.+.+ ||+..|.+.++.+++.++....++++
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666666788888899988999999999998899888776666655 89999998888888776665555543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=114.06 Aligned_cols=160 Identities=14% Similarity=0.050 Sum_probs=120.6
Q ss_pred ccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh---h--c---
Q 015963 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---S--K--- 136 (397)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~---~--~--- 136 (397)
.........|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++ . +
T Consensus 299 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
T TIGR00879 299 GINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378 (481)
T ss_pred CCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 3344445567788889999988999999999999999999999999999999999998888888777662 1 1
Q ss_pred ---chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHH
Q 015963 137 ---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (397)
Q Consensus 137 ---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~ 209 (397)
+...+....++.+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+ +|++.|++.+++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~ 458 (481)
T TIGR00879 379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGL 458 (481)
T ss_pred cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHH
Confidence 2222233333333323334466677889999999999999999999999999999887765 799988888777
Q ss_pred HHHHHhh-hccccCCh
Q 015963 210 CTLLIPG-LFFIPESP 224 (397)
Q Consensus 210 ~~~~~~~-~~~~~e~~ 224 (397)
+++..+. .++.||++
T Consensus 459 ~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 459 NVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHheecccCC
Confidence 6666554 44566653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-12 Score=119.86 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=107.4
Q ss_pred ccHHHHH-HhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHH
Q 015963 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLL 147 (397)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l 147 (397)
..+|.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..+..++.... .+.+.+.+..++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 4556665 5899999999999999999999999999999999999999988877777666544433 233344445555
Q ss_pred HHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHH
Q 015963 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~ 208 (397)
.+.......+...+++.|.+|+++|++++++.+....+|..+||.+++.+ ||+..+...+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 55444444566778899999999999999999888899999999888766 78877755443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-11 Score=109.50 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=116.9
Q ss_pred ccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHH
Q 015963 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEG 149 (397)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~-~~~~l~~~r~l~G 149 (397)
...|.+.+++|.+.++.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ .-++.|
T Consensus 226 ~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g 303 (393)
T PRK09705 226 AWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCG 303 (393)
T ss_pred HHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHH
Confidence 345556667899999999999999999999999999999999999999988888777776655433 22222 234678
Q ss_pred HhhhhhhhhhhhhhheecC-CCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHh-hhccccC
Q 015963 150 FGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP-GLFFIPE 222 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~-~~~~~~e 222 (397)
++.+...+.......+..+ +++|++..++.+....++..++|.+.+++ +|...|++.++..++..+ ...+.||
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888877777777775 57889999999999899999999888777 477778777666655544 3455677
Q ss_pred Ch
Q 015963 223 SP 224 (397)
Q Consensus 223 ~~ 224 (397)
++
T Consensus 384 ~~ 385 (393)
T PRK09705 384 RF 385 (393)
T ss_pred cc
Confidence 64
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-11 Score=108.84 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=115.6
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (397)
..|.+.+|.|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+.+++.+.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33445577899999999999999999999999999999999999999999999999888888899999999999999999
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHH-HHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHH
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~ 214 (397)
.+...+....++.+. +++++++..+..+ ....+|..+||.+++.+ ++ ..++..+++.++.+
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 999889888888887 5566788888775 55667778888888776 55 35555555554443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.7e-11 Score=109.63 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=112.9
Q ss_pred cCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhh
Q 015963 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (397)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 160 (397)
+.+....+.+.++..+...++.+..|++.||+|||+.+.++.++.+++..+...+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788999999999999999999999999999999999999999888888889999899999999999877777777
Q ss_pred hhhheecCCCcchhHHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh
Q 015963 161 VYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~ 215 (397)
.+..+..+++.++...+. .+....+|..+++.+++++ ||+..|.+.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 788888888888776665 5677888888888777766 889999988776665544
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-11 Score=110.26 Aligned_cols=126 Identities=16% Similarity=0.174 Sum_probs=96.2
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~ 151 (397)
..|.+.++.|.+.++.+...+.+.++..++.++.|++.||+|||+.+..+.++..+..+.....++.....+.-.+.|++
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (426)
T PRK12307 253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLM 332 (426)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 45666677899999999999999999999999999999999999999988877776665554433222222222333332
Q ss_pred --hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 152 --VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 152 --~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
..+..+..+.++.|.+|+++|++++|+......+|..++|.+.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 333 ATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 2233445567889999999999999999988899999999988777
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.6e-11 Score=108.73 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=132.6
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcch--hHHHHHHHHHHHHHHHHHh--------hcchhHH
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIAAVPNIIGWLIISF--------SKDSSFL 141 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~l~~~~~~~~~~--------~~~~~~l 141 (397)
....-.+++|++..+...+.-+..+..++|++++|++.||+|.| +++..+.+++.+..+...+ .++.+.+
T Consensus 304 ~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f 383 (477)
T PF11700_consen 304 AGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEF 383 (477)
T ss_pred HHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHH
Confidence 33445668999999999999999999999999999999999999 8999888888666666555 6788899
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHhh
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~~ 216 (397)
.+.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||++.+.+ +-|+.+....++.++.+++
T Consensus 384 ~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l 463 (477)
T PF11700_consen 384 WVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL 463 (477)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988777 4788888777777777777
Q ss_pred hccccCC
Q 015963 217 LFFIPES 223 (397)
Q Consensus 217 ~~~~~e~ 223 (397)
.+.++.+
T Consensus 464 l~~v~~~ 470 (477)
T PF11700_consen 464 LFFVDVE 470 (477)
T ss_pred Hhhccch
Confidence 6666654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=107.87 Aligned_cols=127 Identities=15% Similarity=0.168 Sum_probs=113.7
Q ss_pred ccHHHHHHh-hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHH
Q 015963 71 PTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-SSFLFMGRLLE 148 (397)
Q Consensus 71 ~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~-~~~l~~~r~l~ 148 (397)
...|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+.+..++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI 311 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 345556554 8999999999999999999999999999999999999999888888888888887774 88888899999
Q ss_pred HHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
|++.+...+...+++.|..|+++|+++.++.+....+|..+++.+++.+
T Consensus 312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888764
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=95.36 Aligned_cols=172 Identities=16% Similarity=0.196 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015963 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~ 128 (397)
|..+..........| ....++..-|++++.+|.|.+|...+.++-.+|..+ .++.|.+.|++|+|.++.+|.+...+|
T Consensus 2 W~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 2 WLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred hhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 444444444444444 444555667789999999999999999999999987 488999999999999999999999999
Q ss_pred HHHHHhh-------cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---h
Q 015963 129 WLIISFS-------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---N 198 (397)
Q Consensus 129 ~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~ 198 (397)
..+...+ .++|.+.+..++.|.+.+....+......+.+| ++||.+.|+.-...+++..+-..+...+ +
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~ 158 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD 158 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence 9887653 366778777888888877777777666678887 6899999999999999887766666554 2
Q ss_pred -hHHHHHHhHHHHHHHHhhhccccCC
Q 015963 199 -WRVLAVLGVLPCTLLIPGLFFIPES 223 (397)
Q Consensus 199 -w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (397)
-+..+.....+.++.++..++++..
T Consensus 159 ~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 159 PSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHhhheecc
Confidence 3333344444444545554555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-11 Score=111.35 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=109.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHhhhhhhhhhhhhhheec
Q 015963 90 FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (397)
Q Consensus 90 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 167 (397)
...+..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344566778889999999999999999999999999998888877654 44555667777778788888899999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHhHHHHHHHHhhhccccCCh
Q 015963 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (397)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~f~~~~~~~~~~~~~~~~~~e~~ 224 (397)
|++.|+.++++.+....+|.+++|.+.+.. ++...+++.+...++..+..+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999988732 456777777777666666667788874
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=108.42 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=125.3
Q ss_pred ccHHHHH-HhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015963 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (397)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 149 (397)
.++|.+. +++|.+...+|++.+++.+|..+++++.+++.+|+++++.+..+.++++++.+..+++++.+...+.-++.|
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G 318 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAG 318 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4566554 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~ 215 (397)
++.........+.+.+..|++.||++++++++....+..+|.++.+.+ |-+..+.+.++..++..+
T Consensus 319 ~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 319 AAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999888899999999999999999999888777777777766665 777777776654444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=108.29 Aligned_cols=127 Identities=11% Similarity=0.058 Sum_probs=106.2
Q ss_pred ccHHHHHH-hhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh---cchhHHHHHHH
Q 015963 71 PTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRL 146 (397)
Q Consensus 71 ~~~~~i~~-~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~r~ 146 (397)
...|.+.+ .+|.++.+.++......++..++.++.|++.||+|||+++..+.++.+++..+..+. ++.+.+.+.-+
T Consensus 282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (471)
T PRK10504 282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLF 361 (471)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 34555544 588899999999999999999999999999999999999999988888887766653 33344455677
Q ss_pred HHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
+.|++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+++.+
T Consensus 362 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 362 LQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 888988888888889999999999999999999999999999998888765
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.8e-10 Score=101.72 Aligned_cols=288 Identities=16% Similarity=0.182 Sum_probs=170.4
Q ss_pred HHHHHHHHHHhhhcccccCcccHHHHHHhhcCCch-hhHHHHhhh----HHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Q 015963 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTIS-EFSIFGSLA----NVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (397)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~~~~s~~----~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~ 125 (397)
+.....+-.+..++......+..+.....++.... ..+...... .+...+.++..|.++||+|||..+....+..
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~ 102 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGT 102 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHH
Confidence 33444445556666666666666666666554322 233333333 6788899999999999999999999999988
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh--hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hh
Q 015963 126 IIGWLIISFSKDSSFLFMGRLLEGFG--VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NW 199 (397)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w 199 (397)
.+..+...+.. +|.++ +.|+. .+.......++++|....++|....++.+..+..+..++|.+++.. |.
T Consensus 103 ~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~ 177 (463)
T KOG2816|consen 103 ILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI 177 (463)
T ss_pred HHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc
Confidence 88888777766 33333 44433 3345667788999999999999999999999999999999988776 66
Q ss_pred HHHHHHhHHHHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhc
Q 015963 200 RVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278 (397)
Q Consensus 200 ~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (397)
-..|.+..+..++..+ ...++||+-....+. ++ ........ ...+......++...+.
T Consensus 178 a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~~---~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 236 (463)
T KOG2816|consen 178 ALVFLIAAASGILSLLYMLLFLPESLQEKERS---DA---TLRELTPG---------------SLDSSHVADAFQSLTKV 236 (463)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccCccccc---cc---cccccCCC---------------cccchhhhhhhhhhccc
Confidence 6788888877777755 566788874311100 00 00000000 00000001111111111
Q ss_pred cchhhHHHHHHHHHH---HHhhhhH-HHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHH-HHHHHhchhHHHHH
Q 015963 279 RYWFPLMIGIGLLVL---QQLSGIN-GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNT-WLMDKAGRRLLLLI 351 (397)
Q Consensus 279 ~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~-~l~d~~~~~~~~~~ 351 (397)
+..+..+.......+ ....+.. ...+|+.. ..+++... ......+....++.++.. .+...++.|+.+..
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~---~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l 313 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKA---KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL 313 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEEEEEEee---ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence 111111111111111 1110000 11112211 23666655 344555666667766665 77788888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 015963 352 SSSGMAASFFLVSVAF 367 (397)
Q Consensus 352 ~~~~~~~~~~~~~~~~ 367 (397)
|.....+.....++..
T Consensus 314 Gl~~~~~~~~~~af~~ 329 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFAT 329 (463)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888887777653
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.8e-10 Score=100.69 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=107.6
Q ss_pred HHHHHhhcCCchhhHHHHhhhHH-HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh------hcchhHHHHHHH
Q 015963 74 AEIISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF------SKDSSFLFMGRL 146 (397)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~------~~~~~~l~~~r~ 146 (397)
+.+.+|.|.+.++.+++...... ...++.++.|++.||+|+|+.+..+.++.++..+.... .++...+.....
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 44556789999999999888764 66778899999999999999998877666443332221 123334455566
Q ss_pred HHHHhhhhhhhhhhhhhheecCC-CcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~ 215 (397)
+.+++.+...+...+...+..++ +++++.+++.+....+|..++|.+++.+ ||+..|+..++..++..+
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 66777777777777787777765 7899999999999999999999998776 788888887776666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-10 Score=106.46 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=101.6
Q ss_pred cHHHHHHhhcCCchhhHH------------HHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcc--
Q 015963 72 TQAEIISDLKLTISEFSI------------FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-- 137 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~------------~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~-- 137 (397)
..|.+.++.|.+..+.+. ...+..++..++.++.++++||+|||+.++.+..+.+++.++.+...+
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366677788876543211 233344566678889999999999999998888877777666554321
Q ss_pred -hhHHHHHH-HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-h-------------hHH
Q 015963 138 -SSFLFMGR-LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-N-------------WRV 201 (397)
Q Consensus 138 -~~~l~~~r-~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-~-------------w~~ 201 (397)
.....+.- +...++..+..+....+..|.+|.+.|+++.++.+....+|..+++.+.+.+ + +..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 11111111 1112222233455667789999999999999999999999999988777554 1 345
Q ss_pred HHHHhHHHHHHHHhhhccccCCh
Q 015963 202 LAVLGVLPCTLLIPGLFFIPESP 224 (397)
Q Consensus 202 ~f~~~~~~~~~~~~~~~~~~e~~ 224 (397)
.|++.++..++..+..+++||+.
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCC
Confidence 66666666665555556779874
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=105.89 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=98.6
Q ss_pred ccHHHHH-HhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh--cchhHH-HHHHHHHHHHHHH--HHhhcchhHHHHH
Q 015963 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSL-MIAAVPNIIGWLI--ISFSKDSSFLFMG 144 (397)
Q Consensus 71 ~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~l~~~~~~~--~~~~~~~~~l~~~ 144 (397)
...|.+. +++|.+..+.+...+.+.++..++.++.|+++||+ ++|+.. ....+...+.... .....+.....+.
T Consensus 264 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK11663 264 DWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAAC 343 (434)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 3445444 67899999999999999999999999999999999 333332 2211111111111 1112333333344
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhh
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~ 217 (397)
.+..|++...........+.|.+|+++|+.+.|+.+....+|..++|.+.+.+ ||+..|++.++..++..+..
T Consensus 344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44445433222223345678999999999999999999999999998888766 89999988877766655433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.8e-10 Score=97.49 Aligned_cols=153 Identities=17% Similarity=0.235 Sum_probs=125.0
Q ss_pred ccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh-cchhHHHH
Q 015963 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFM 143 (397)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~l~~ 143 (397)
....++.+-|.+++..|.+.+.++++.-+|.++..+|+.+.|++.|| +.|+.+.....+.++..+...+. ++.+..++
T Consensus 227 ~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~ 305 (394)
T COG2814 227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALA 305 (394)
T ss_pred hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 33455567778999999999999999999999999999999999999 99999998877777777776655 45556666
Q ss_pred HHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhcc
Q 015963 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (397)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~ 219 (397)
.-++-|++.+.........+.+ ..++.+..+.+++...+++|..+|..+++.. |+....++.+++.++..+..+.
T Consensus 306 ~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 306 LLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 6777888777777766777777 4468999999999999999999998888776 8899999998888877665443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=108.01 Aligned_cols=146 Identities=11% Similarity=0.031 Sum_probs=106.7
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchh-------HHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG-------SLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~-------~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l 147 (397)
.+.+++|.+..+.+.+.+++.++..++.++.|+++||+|||+ ......++.++..++....++.+..++.-++
T Consensus 278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l 357 (476)
T PLN00028 278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMIL 357 (476)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 346678999999999999999999999999999999998762 2333334444444445556666666666667
Q ss_pred HHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHhHHHHHHHHhhhcccc
Q 015963 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF---VNWRVLAVLGVLPCTLLIPGLFFIP 221 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~---~~w~~~f~~~~~~~~~~~~~~~~~~ 221 (397)
.+++.+...+...+++.+.. +++|+...++.+.+..+|..+++.+.+. .+|+..|++.+++.++..+..++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 358 FSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 77766666666666666665 4789999999988888888888877542 2699999888877777666555543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-10 Score=104.40 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=98.1
Q ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHhhhhhhhhhhh
Q 015963 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGRLLEGFGVGVISYTVPV 161 (397)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (397)
+..+.+++.++..++..++.+++++++||+|+|+.+..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999998888888777665 35667777888999999999999999
Q ss_pred hhheecC-------CCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 162 YIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 162 ~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988865 45679999999999999999988887665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=105.04 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=108.8
Q ss_pred HhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHhhhhhh
Q 015963 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGRLLEGFGVGVIS 156 (397)
Q Consensus 78 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~ 156 (397)
++.+.+....+++.+.+.......+++.|++.||+++|+.+..+..+..++.....++ ++.+.+++..++.|+|.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888888888888888999999999999999999998888888777764 567777788999999998888
Q ss_pred hhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh
Q 015963 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~ 215 (397)
|...+.+.+..|++.|+++.+..+ ...+|..+||.+++.+ +.+..|++.+....+..+
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 378 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWL 378 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHH
Confidence 888899999999999999988655 4447888888777666 666677665554444433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=105.54 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=93.1
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcch-hHHH-HHH-HHHHHHHHHHHh--hcchhHHHHHHHHHH
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK-GSLM-IAA-VPNIIGWLIISF--SKDSSFLFMGRLLEG 149 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-~~~~-~~~-~l~~~~~~~~~~--~~~~~~l~~~r~l~G 149 (397)
.+.+++|.+..+.++..+.+.++..++.++.|++.||.++| +... ... ....++...... ..+.....+..++.|
T Consensus 242 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 321 (379)
T TIGR00881 242 YLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALG 321 (379)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999986443 3222 211 122222222222 234455566677778
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHH
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~ 202 (397)
+......+....+..|..|+++|+++.++.+....+|..++|.+.+.+ ||++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 322 FLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 766666666677889999999999999999999999999998888766 66654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=100.45 Aligned_cols=174 Identities=21% Similarity=0.186 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015963 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~ 128 (397)
-.+.+++.-..+.+|.+. .....-..-.+++|++..+...+.....+..+++++++|+|.||+|.|+++..+.++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence 344444444445555432 2222222345589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHH
Q 015963 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLA 203 (397)
Q Consensus 129 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f 203 (397)
++...+...-..+.+.-.+.|...|+.+....++..+..|+++-++.+|+++.....+..+||.+-+.+ +-|..+
T Consensus 332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 998888887778888889999999999999999999999999999999999999999999999888766 567766
Q ss_pred HHhHHHHHHHHhhhccccCC
Q 015963 204 VLGVLPCTLLIPGLFFIPES 223 (397)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~ 223 (397)
....++..+.+++...+|++
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 66666666667777777765
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.6e-10 Score=104.25 Aligned_cols=151 Identities=12% Similarity=-0.012 Sum_probs=96.9
Q ss_pred cHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH--h--hcchhHHHHHHH
Q 015963 72 TQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F--SKDSSFLFMGRL 146 (397)
Q Consensus 72 ~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~--~--~~~~~~l~~~r~ 146 (397)
..|. +.+++|.+.++.+...++..++..+++++.|+++||+|||+.+..+.++.++..+... . .++....+..-.
T Consensus 265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (432)
T PRK10406 265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVM 344 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3454 4566899988999999988888899999999999999999988776655443332221 1 223332222222
Q ss_pred HHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHH-HHHHHHHHhhhhh---h-hHHHHHHhHHHHHHHHhhhcccc
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT-IGIMLAYLLGLFV---N-WRVLAVLGVLPCTLLIPGLFFIP 221 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~i~~~~---~-w~~~f~~~~~~~~~~~~~~~~~~ 221 (397)
+.++..+...+....++.|++|++.|+.+.|+.+.... +.....|.+...+ + |...+++.++..++..+..++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 345 CALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 23333444445567788999999999999999765433 3233466655544 3 55566666666555555444444
Q ss_pred C
Q 015963 222 E 222 (397)
Q Consensus 222 e 222 (397)
+
T Consensus 425 ~ 425 (432)
T PRK10406 425 R 425 (432)
T ss_pred h
Confidence 3
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-10 Score=105.57 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=96.5
Q ss_pred cHHHHH-HhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH---HHHHHHHhh--cchhHHHHHH
Q 015963 72 TQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI---IGWLIISFS--KDSSFLFMGR 145 (397)
Q Consensus 72 ~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~---~~~~~~~~~--~~~~~l~~~r 145 (397)
..|.+. +..|.+..+.++..+.+.++..++.++.|+++||+++|+....+..+.. ++.+..... .+.+.....-
T Consensus 273 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T TIGR00712 273 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICM 352 (438)
T ss_pred hHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 445444 4578999999999999999999999999999999975432223322221 222222221 2334333444
Q ss_pred HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHH-HHHHHHhhhhh----hhHHHHHHhHHHHHHHHh-hhcc
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~-~~~~ 219 (397)
++.|++.............|.+|+++|+.+.|+.+....+| ..++|.+.+.+ ||...+++.....++..+ ....
T Consensus 353 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 353 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred HHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 45554432222222346779999999999999987766655 46677766655 788888877665555544 4455
Q ss_pred ccCC
Q 015963 220 IPES 223 (397)
Q Consensus 220 ~~e~ 223 (397)
+||+
T Consensus 433 ~~~~ 436 (438)
T TIGR00712 433 MIGE 436 (438)
T ss_pred Hhhc
Confidence 6665
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.9e-10 Score=102.54 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=101.6
Q ss_pred HHHHHhhcCCchhhHHHHhhhH-HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---Hhh-cchhHHHHHH---
Q 015963 74 AEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGR--- 145 (397)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~---~~~-~~~~~l~~~r--- 145 (397)
+.+.+++|.+.++.+++.+... .+..++.++.|++.||+|+|+.+..+..+..+..+.. +.. ++.+.+.+.-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4567778999999999986654 5689999999999999999998887777666554433 343 4555555444
Q ss_pred -HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhhhc
Q 015963 146 -LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLF 218 (397)
Q Consensus 146 -~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~w~~~f~~~~~~~~~~~~~~~ 218 (397)
+..|++.+...+....++.+.+|.++++...+..+.+..++..++..+...+||+..|.+.++.+++.++..+
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888888888877665544443333333333444555556999999998888777655543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=99.33 Aligned_cols=137 Identities=12% Similarity=0.177 Sum_probs=107.3
Q ss_pred HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHH
Q 015963 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGF 150 (397)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~ 150 (397)
+.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++.... ++.+.+++.-++.|+
T Consensus 242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (406)
T PRK15402 242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF 321 (406)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 456789999999998888888999999999999999999999999988887777766653 356667788899999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHH
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~ 213 (397)
+.+...+......... ++++|+++.+..+....+|..+|+.+++.+ ++....+..++.+++.
T Consensus 322 g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 322 GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 9988777666655443 458999999999999999999999888876 4444444444444333
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-09 Score=97.35 Aligned_cols=173 Identities=16% Similarity=0.128 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015963 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~ 128 (397)
..+.+.+.++.-..|. +.....-..+-++-|++.++..+.+........+..+.+..+.||+|||+.++.+..+..+.
T Consensus 271 ~~i~~~v~~~qq~sGi--~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 271 LLIGIVVSFAQQFSGI--NAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHHHhcCc--ceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 3444444444444443 23333445678888999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhc----ch--h---HHHHHHHHHHHhhhh-hhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHH----HHhh
Q 015963 129 WLIISFSK----DS--S---FLFMGRLLEGFGVGV-ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA----YLLG 194 (397)
Q Consensus 129 ~~~~~~~~----~~--~---~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~----~~i~ 194 (397)
.++..... .. | ..+++.++..++.+. .-|...-+.+|.+|++.|..++++.....-+...+- |.+.
T Consensus 349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~ 428 (485)
T KOG0569|consen 349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ 428 (485)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776541 11 1 123444444444333 356778899999999999999988777666655443 3333
Q ss_pred hhhhhHHHHHHhHHHHHHH-HhhhccccCCh
Q 015963 195 LFVNWRVLAVLGVLPCTLL-IPGLFFIPESP 224 (397)
Q Consensus 195 ~~~~w~~~f~~~~~~~~~~-~~~~~~~~e~~ 224 (397)
..+|- +.|++..++.++. +.++..+||+.
T Consensus 429 ~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 429 NVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 33343 6666666665555 55677899984
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=105.51 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=145.9
Q ss_pred HHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHH
Q 015963 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLI 131 (397)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~l~~~~~~~ 131 (397)
...++.....+...+....+|.+.++.+.+..+.+.+.++..+...++.++.|.++|+.. ++.+..++.+..+++.+.
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~ 381 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF 381 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH
Confidence 333333444445555666788899999999999999999999999999999999999988 566777888899999999
Q ss_pred HHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHh
Q 015963 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLG 206 (397)
Q Consensus 132 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~ 206 (397)
+.++++++.+...-.+.|+..|.........+.|..+.++-..+.|+.....+++.++||.+++.+ +|...|+.+
T Consensus 382 ~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~ 461 (509)
T KOG2504|consen 382 LPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFC 461 (509)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhc
Confidence 999999999999999999999999998888999999999999999999999999999999999877 599999999
Q ss_pred HHHHHHHHhhhcccc
Q 015963 207 VLPCTLLIPGLFFIP 221 (397)
Q Consensus 207 ~~~~~~~~~~~~~~~ 221 (397)
++..++....++..|
T Consensus 462 g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 462 GLCFLLSAVLLLILR 476 (509)
T ss_pred ChHHHHHHHHHHHhH
Confidence 888877776666655
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=100.06 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=91.4
Q ss_pred cccHHHHH-HhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH-HH---hhcchhHHHHH
Q 015963 70 SPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI-IS---FSKDSSFLFMG 144 (397)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~-~~---~~~~~~~l~~~ 144 (397)
....|.+. +.+|.+.++.++....+.++..++.++.|+++||+|||+.+..+.++..+.... .. ..+++..+.+.
T Consensus 258 ~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T PRK15075 258 TVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAV 337 (434)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 34456554 458999999999999999999999999999999999999888765544332221 11 12344444455
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHH-HHHHHHHHHHHHHhhhhh
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~ 197 (397)
.++.|++.+...+....++.|.+|+++|+.+.++. +.+..++..++|.+.+++
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 338 ELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 66677777777777778899999999999999885 334444456677766554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=101.55 Aligned_cols=114 Identities=11% Similarity=0.196 Sum_probs=95.3
Q ss_pred ccHHHHHHhhcCCchhhHHHHhhhH-HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh-----------cch
Q 015963 71 PTQAEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----------KDS 138 (397)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----------~~~ 138 (397)
...|.+.+++|.+.++.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+. ++.
T Consensus 230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (356)
T TIGR00901 230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL 309 (356)
T ss_pred HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 3455555668999999998887766 6788999999999999999999998888888777655543 345
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHH
Q 015963 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184 (397)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 184 (397)
+.+..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 6777889999999999999999999999999999999999877653
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-09 Score=96.28 Aligned_cols=140 Identities=9% Similarity=0.068 Sum_probs=108.4
Q ss_pred HHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Q 015963 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGV 152 (397)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 152 (397)
.|.+.+++|.+.++.+...+.+.++..++.++.+++.||.++|.......+...+..++....++.+.+.+..++.|++.
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46677888999999999999999999999999999999965443344334334444555556677788888899999999
Q ss_pred hhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHH
Q 015963 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (397)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~ 213 (397)
+...+...+++.+..| +++++..+.......+|..+|+.+++.+ |++..++..+...++.
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 9999988988998887 5666777777777788888888888776 7788787776554433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-08 Score=92.88 Aligned_cols=148 Identities=12% Similarity=0.161 Sum_probs=118.7
Q ss_pred cccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhhcc--------hhH
Q 015963 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKD--------SSF 140 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~--------~~~ 140 (397)
..+...+.+.+|.+.+....+...+....-+..+++|.++|+ +||++.+.++.++..+|.++.+++.. ...
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 344556677789999999999999999999999999999995 79999999999999999988877521 123
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhheecCCCc---chhHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHHHh
Q 015963 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLG 206 (397)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~i~~~~-----------~w~~~f~~~ 206 (397)
.+++-.+..+|.|+.-+...+...|.+++++ |-..+.++..+.++|..+++.+..++ +|...|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 5567778889999999999999999997543 55678888888999999887776554 388888888
Q ss_pred HHHHHHHHhhh
Q 015963 207 VLPCTLLIPGL 217 (397)
Q Consensus 207 ~~~~~~~~~~~ 217 (397)
++..++.++..
T Consensus 168 ~i~m~ia~lvf 178 (654)
T TIGR00926 168 AILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHH
Confidence 87776665543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=113.15 Aligned_cols=135 Identities=17% Similarity=0.205 Sum_probs=116.4
Q ss_pred HHHHHhhcCCch-hhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Q 015963 74 AEIISDLKLTIS-EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGV 152 (397)
Q Consensus 74 ~~i~~~~~~s~~-~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 152 (397)
+.+.+++|.+.. +.+++.+...++..+++++.|+++||+++|+.+.++.++.+++.++..+..+.+.+++..++.|++.
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA 336 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 345677899998 9999999999999999999999999999999999999999988888888888888888999999999
Q ss_pred hhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHH
Q 015963 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVL 208 (397)
Q Consensus 153 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~ 208 (397)
+...+...+++.+..|++.|++++++.+....+|..+++.++..+ ++...+++.+.
T Consensus 337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999999999999999999988888887777766554 34445554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-09 Score=92.85 Aligned_cols=126 Identities=15% Similarity=0.061 Sum_probs=100.0
Q ss_pred hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhh
Q 015963 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 159 (397)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 159 (397)
+|.++++.+...+.+..+..++.+..+++.||+|+||.+.++.++..++.++....++... ..+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999888888888776666555433 345668899999999999
Q ss_pred hhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHH
Q 015963 160 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (397)
Q Consensus 160 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~ 208 (397)
.+...+..++ +.+.+.++. ....+|..+.|.+.+.+ |.+..|++..+
T Consensus 252 ~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 252 FSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 9998888774 345566664 45668888888866665 66677664433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-08 Score=93.20 Aligned_cols=157 Identities=19% Similarity=0.306 Sum_probs=121.9
Q ss_pred ccCcccHHHHHHhhc-CCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh-cchhHHHHH
Q 015963 67 GYSSPTQAEIISDLK-LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMG 144 (397)
Q Consensus 67 ~~~~~~~~~i~~~~~-~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~ 144 (397)
+.+....+..-++.| .+.+..+.+.++..++-.+.-...+++..|+|.|+++.++.+..++=..+.+.. ++.+...+.
T Consensus 224 ~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~ 303 (400)
T PF03825_consen 224 AAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVAL 303 (400)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 333344555667777 677778888888888888999999999999999999999999999999888887 555444333
Q ss_pred ----HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHH-HHHHHHHHHHHhhhhh----------hhHHHHHHhHHH
Q 015963 145 ----RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL-SVTIGIMLAYLLGLFV----------NWRVLAVLGVLP 209 (397)
Q Consensus 145 ----r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~i~~~~----------~w~~~f~~~~~~ 209 (397)
..+.|+..+........++.+..|++.|+++.++++. ..++|..+|..+++++ .|...+.+.+..
T Consensus 304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~ 383 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVM 383 (400)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 4569999999999999999999999999999999766 5789999999999887 245556666665
Q ss_pred HHHHHhh-hccccCC
Q 015963 210 CTLLIPG-LFFIPES 223 (397)
Q Consensus 210 ~~~~~~~-~~~~~e~ 223 (397)
.++..++ +.+.+|+
T Consensus 384 ~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 384 ALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHhhccCC
Confidence 5555443 3334443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-09 Score=94.86 Aligned_cols=118 Identities=17% Similarity=0.297 Sum_probs=96.0
Q ss_pred HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHH
Q 015963 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGF 150 (397)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~-----~~~~~l~~~r~l~G~ 150 (397)
+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++.... ++...+.+..++.|+
T Consensus 233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 312 (385)
T TIGR00710 233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI 312 (385)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999998888877777666543 233455566788999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHH-HHHHHHHHHhh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV-TIGIMLAYLLG 194 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~~~~~i~ 194 (397)
+.+...+.......|..| ++|+++.++.+... ..|.+.++.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888876 68899999877655 45666666665
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.1e-09 Score=96.81 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=96.5
Q ss_pred HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhhhh
Q 015963 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (397)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 154 (397)
++.+|.+....++......++..++.++.+++.||+|+|+.+.++.++..++.++..+.+ +++.+++..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 444666655555555555677888999999999999999999999999888888777654 566777778899999999
Q ss_pred hhhhhhhhhheecCCC-------cchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 155 ISYTVPVYIAEIAPQN-------MRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 155 ~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
..+...+...|..|.+ ++|...++.+....+|..+|+.+.+.+
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888643 358889999999889988888777544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=97.73 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=105.1
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (397)
..|.+.++.+.++.+.+++.++..++...+..+.+++.|| ++.|+.+..+.++.+++.++.+.+++++.+.+...+.|+
T Consensus 230 ~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 309 (400)
T PRK11646 230 MLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYI 309 (400)
T ss_pred hhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555555655577888999888888777777677777764 666777788888888888888888888888888889999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
+.+...|...+++.|..|+++|++++++.+....+|..+||.+++.+
T Consensus 310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 99888899999999999999999999999999999999999999887
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-09 Score=97.30 Aligned_cols=142 Identities=11% Similarity=0.195 Sum_probs=104.3
Q ss_pred HHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHh
Q 015963 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-SKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~r~l~G~~ 151 (397)
.|.+.+.+|.++++.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..++.+++
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 302 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35566778999999999999999999999999999999999999999988888887765543 45556666667777776
Q ss_pred hhhhhhhhh-hhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHhh
Q 015963 152 VGVISYTVP-VYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 152 ~g~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~~ 216 (397)
.....+... ....+..+++.++... .+....+|..+||.+++.+ +|++.+.+.++...+.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 303 LFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 655444333 3444444445555443 3566778888888888765 6888888887666655443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=97.11 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=99.9
Q ss_pred ccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015963 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (397)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 149 (397)
...|.+.++.|.+..+.+.+.+.+.++..+++++.|++.||+ +||+.+..+..+.+++.++..+.++..... .-++.|
T Consensus 218 ~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 296 (355)
T TIGR00896 218 GWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLG 296 (355)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHH
Confidence 346667777899999999999999999999999999999999 566677788888888877777765433332 457889
Q ss_pred HhhhhhhhhhhhhhheecC-CCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 150 FGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
++.|...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887777765554 46678888888888888888888887765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.9e-10 Score=99.34 Aligned_cols=123 Identities=21% Similarity=0.319 Sum_probs=106.4
Q ss_pred CcccHHHH-HHhhcCC-chhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh---cchhHHHH
Q 015963 69 SSPTQAEI-ISDLKLT-ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFM 143 (397)
Q Consensus 69 ~~~~~~~i-~~~~~~s-~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---~~~~~l~~ 143 (397)
.....|.+ .+++|.+ ..+.++..++..++..++.++.|++.||+|+|+..........++.+..... ++....++
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLII 304 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHH
T ss_pred hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44556665 8889999 7899999999999999999999999999999888887777777776666544 34567777
Q ss_pred HHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHH
Q 015963 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191 (397)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 191 (397)
.-++.|++.+...+...+++.|..|+++|+++.++.+....+|..+||
T Consensus 305 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 305 ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 889999999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-09 Score=101.99 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=108.1
Q ss_pred cHHHH-HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh--h--cchhHHHHHHH
Q 015963 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--S--KDSSFLFMGRL 146 (397)
Q Consensus 72 ~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~--~--~~~~~l~~~r~ 146 (397)
..|.+ ++.+|.++.+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+ . .+.+.+....+
T Consensus 277 ~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (485)
T TIGR00711 277 LLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQF 356 (485)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 44544 4558999999999999999999999999999999999999999999988888887763 1 34566777789
Q ss_pred HHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
+.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+
T Consensus 357 l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 357 IRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877777778888999999999999999999999998887765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=96.84 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=107.0
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhh
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (397)
.+++.+|.++.+.|++.+.+.++..++++..+++.||.++|+.+..+. +.++..++.++.++++...+.-++.|++.+.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 456778999999999999999999999999999999999999888775 4445555556677777777788899999988
Q ss_pred hhhhhhhhhheecCCCc-chhHHHHHHHHHHHHHHHHHHhhhhh---h--hHHHHHHhHHH
Q 015963 155 ISYTVPVYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV---N--WRVLAVLGVLP 209 (397)
Q Consensus 155 ~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~---~--w~~~f~~~~~~ 209 (397)
..+...+.+.+..|++. +|++.++.+....+|..++..+.+.+ + ++..+...+.+
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL 370 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 88888888888766554 79999999999999999888877655 3 44444444444
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.8e-10 Score=94.47 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcch
Q 015963 94 ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 173 (397)
Q Consensus 94 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 173 (397)
..+.-..|.++.+.+.||+|||+.+..+.+++++..++...+.+-....+.-+..-+..++.+.+.+.|..|.+|.+.|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34566789999999999999999999999999999999888876555555555555566677788899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHhHHHHHHHHhhhccccCC
Q 015963 174 SLGSVNQLSVTIGIMLAYLLGLFVN--WRVLAVLGVLPCTLLIPGLFFIPES 223 (397)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~i~~~~~--w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (397)
...|.-.....+|.++.|+++--.+ -..+..+.+...+++.+..+++|-.
T Consensus 470 tgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 9999999999999999999983222 2233444444555555555556643
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-09 Score=98.53 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=97.1
Q ss_pred CcccHHHHHHhh--cCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhH-HHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015963 69 SSPTQAEIISDL--KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS-LMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (397)
Q Consensus 69 ~~~~~~~i~~~~--~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~l~~~~~~~~~~~~~~~~l~~~r 145 (397)
....+|.+.+++ +.+..+.+...+...++..++.++.|+++||++||+. .....++..++.++....++....+++-
T Consensus 261 ~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (412)
T TIGR02332 261 INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGI 340 (412)
T ss_pred HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345667777765 5677888999999999999999999999999998775 3344444444433322233322222222
Q ss_pred HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHH
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPC 210 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~ 210 (397)
.+.+++.....+.......|.+|+++|+.+.|+.+....+|..++|.+.+.+ +|++.+++.++..
T Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 341 IMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 2333333333344445557788999999999999999999999999887665 5998888766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=93.86 Aligned_cols=130 Identities=15% Similarity=0.266 Sum_probs=102.0
Q ss_pred ccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHh----hhcchhHHHHH-HHHHHHHHHHHHhhcchh------
Q 015963 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLMIA-AVPNIIGWLIISFSKDSS------ 139 (397)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~l~~~~~~~~~~~~~~~------ 139 (397)
...|.+..++|++....+.+--.--+...+.+|+.|..+| ||||||.++.. .++..++.++..++.++.
T Consensus 53 sy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~ 132 (498)
T KOG0637|consen 53 SYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN 132 (498)
T ss_pred ccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC
Confidence 3445577888999999888888888889999999999999 58998877754 666677777777664332
Q ss_pred -----------HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchh-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 015963 140 -----------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVNQLSVTIGIMLAYLLGLFVNWR 200 (397)
Q Consensus 140 -----------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~i~~~~~w~ 200 (397)
.++++-.+.-++.-.......+++.|...++++.+ +.+++....++|..+|..++.+.+|+
T Consensus 133 ~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 133 ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY 205 (498)
T ss_pred cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence 33444445555666777788999999998777666 99999999999999999999888766
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-09 Score=94.23 Aligned_cols=142 Identities=16% Similarity=0.145 Sum_probs=115.9
Q ss_pred CCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhh
Q 015963 82 LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPV 161 (397)
Q Consensus 82 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (397)
.++..+|.+.++..+.-++.-.+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+........
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheecCCCcchhHHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHH-hhhccccCC
Q 015963 162 YIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLFFIPES 223 (397)
Q Consensus 162 ~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~-~~~~~~~e~ 223 (397)
|+++.+|+|..++...+ .+.+.++|..+.+.+++.+ |.+..|++.+.+.+... +..+.++++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 99999998887777766 3677788888877777766 88888877776655544 445555544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-09 Score=93.08 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=110.9
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh--cchhHHHHH-HHHHHHHHHHHHhhc--chhHHHHHHHHHH
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMIA-AVPNIIGWLIISFSK--DSSFLFMGRLLEG 149 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~-~~l~~~~~~~~~~~~--~~~~l~~~r~l~G 149 (397)
.+.|..|.|..+.++..+.|-.+...|.+++|+++||+ |||.+..+. +++..++.+..-.++ |+.+..++-++.|
T Consensus 278 YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iG 357 (448)
T COG2271 278 YLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIG 357 (448)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999996 677665544 444444444444555 4577778889999
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhh
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~ 216 (397)
+..-+..-..-....|..|++--|.+.|+...+..+ |...+....+.+ ||...|++..+.++++.++
T Consensus 358 f~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ll 429 (448)
T COG2271 358 FLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILL 429 (448)
T ss_pred HHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHH
Confidence 877666666677788999999999999999988888 777776666555 9999998877766666543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-09 Score=109.62 Aligned_cols=136 Identities=12% Similarity=0.028 Sum_probs=112.1
Q ss_pred HHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh----------------
Q 015963 73 QAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------------- 135 (397)
Q Consensus 73 ~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---------------- 135 (397)
+|. +.+.+|.+..+.+++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 248 ~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 327 (1140)
T PRK06814 248 LPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV 327 (1140)
T ss_pred hHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhh
Confidence 444 455689999999999999999999999999999999888887777766666666555443
Q ss_pred ----cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHh
Q 015963 136 ----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLG 206 (397)
Q Consensus 136 ----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~ 206 (397)
++.+.+.+..++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+++++.+.+ ++...+++.
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~ 407 (1140)
T PRK06814 328 FLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFI 407 (1140)
T ss_pred hhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 67777888899999999999999999999999999999999999999999988888877665 455555544
Q ss_pred HH
Q 015963 207 VL 208 (397)
Q Consensus 207 ~~ 208 (397)
++
T Consensus 408 ~~ 409 (1140)
T PRK06814 408 AL 409 (1140)
T ss_pred HH
Confidence 43
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=93.75 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=93.5
Q ss_pred HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhh
Q 015963 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155 (397)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 155 (397)
+.+++|.+..+.+.+.+...++..++.++.+++.||+|||+.+..+.++..++.++..+.++.+.....-.+.+.+.+..
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 309 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG 309 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999888888887766554444444444444443
Q ss_pred hhhhhhhhheecCCCcc-hhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhHH
Q 015963 156 SYTVPVYIAEIAPQNMR-GSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVL 208 (397)
Q Consensus 156 ~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~i~~~~~w~~~f~~~~~ 208 (397)
.+.. ...+..|.++| +.+.++...+..+|..+++.+.+.+++.....+.+.
T Consensus 310 ~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 310 FGVA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred hHHH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 3332 22333443333 556666666667777777777777776654444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-08 Score=90.43 Aligned_cols=121 Identities=20% Similarity=0.131 Sum_probs=88.2
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---h-hcchhHHHHHHHHHHH
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F-SKDSSFLFMGRLLEGF 150 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~-~~~~~~l~~~r~l~G~ 150 (397)
.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+... . ..+.+.+.++-.+.+.
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG 299 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999999999999999888766544333222 2 2244555555555555
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHH-HHHHHHHHHHhhhh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLF 196 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~ 196 (397)
+.+........++.|..| ++|+++.++.+.. ..+|..+++.++..
T Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555556666667777766 8899998886553 56778888777643
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=89.58 Aligned_cols=148 Identities=24% Similarity=0.423 Sum_probs=122.1
Q ss_pred cccccCcccHHHHHHhhcCCc--hhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcc--hh
Q 015963 64 FTCGYSSPTQAEIISDLKLTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--SS 139 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~--~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~--~~ 139 (397)
.+.....+..+.+..+++.+. ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+++++..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 555666677788888887666 48899999999999999999999999999998888888776777777777776 88
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhheecCC-CcchhHHHHHHH-HHHHHHHHHHHhhhhh------hhHHHHHHhHHHHH
Q 015963 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQL-SVTIGIMLAYLLGLFV------NWRVLAVLGVLPCT 211 (397)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~i~~~~------~w~~~f~~~~~~~~ 211 (397)
.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.++..+ +||+.|........
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999987 678888888877 5777888887666544 68886666655443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=93.94 Aligned_cols=133 Identities=20% Similarity=0.251 Sum_probs=110.4
Q ss_pred cccccCcccHHHHHHh-hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc--chhH
Q 015963 64 FTCGYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSF 140 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~ 140 (397)
......+...+.+.++ ++ +++..+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ |.+.
T Consensus 239 ~~~~~~~~~~~y~~~~vl~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLG-NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWL 317 (428)
T ss_pred hhhhhhhhHHHHHHHHHhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHH
Confidence 3444445555555555 44 446788888999999999999999999999999999999999999999988886 9999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhheecCC-------CcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
+++.-++.|++.+...+...++++|..+. ++.|...+.++...-+|..+++.+.+.+
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999873 3347788888888888888887766544
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=98.93 Aligned_cols=123 Identities=13% Similarity=0.098 Sum_probs=107.8
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHh
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFG 151 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 151 (397)
.+++.+|.++.+.|.....+.++..++.++.|++.||+|+|+.+..+.++..++.++.... ++.+......++.|+|
T Consensus 285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g 364 (495)
T PRK14995 285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS 364 (495)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 4566689999999999999999999999999999999999999999988888877665542 4555667788999999
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
.|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888889999999999999999999999999998888765
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-09 Score=97.88 Aligned_cols=149 Identities=16% Similarity=0.115 Sum_probs=100.4
Q ss_pred ccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHH--------HHHHHHH--HHHHHHHHh-hcch
Q 015963 71 PTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL--------MIAAVPN--IIGWLIISF-SKDS 138 (397)
Q Consensus 71 ~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~--------~~~~~l~--~~~~~~~~~-~~~~ 138 (397)
..+|. +.+++|.+..+.+++.++..++..++.++.|+++||+++|+.. ..+.... ++..+.... ..+.
T Consensus 282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (465)
T TIGR00894 282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF 361 (465)
T ss_pred HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 34554 4567899999999999999999999999999999998765322 1111111 111111222 2344
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHhHHHHH
Q 015963 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPCT 211 (397)
Q Consensus 139 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-------~w~~~f~~~~~~~~ 211 (397)
...++.-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+ +|+..|.+.++..+
T Consensus 362 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~ 440 (465)
T TIGR00894 362 YLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNI 440 (465)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHH
Confidence 444444555555555555544455556665 5899999999999999999999888764 38888888887777
Q ss_pred HHHhhhccc
Q 015963 212 LLIPGLFFI 220 (397)
Q Consensus 212 ~~~~~~~~~ 220 (397)
+..+...+.
T Consensus 441 i~~i~~~~~ 449 (465)
T TIGR00894 441 LCVIFYLIF 449 (465)
T ss_pred HHHHHeeee
Confidence 766554444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-08 Score=91.42 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=112.4
Q ss_pred ccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhc-----chhHHHHHHHHHHHHHHHHHhhc----chhHH
Q 015963 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMIAAVPNIIGWLIISFSK----DSSFL 141 (397)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~l~~~~~~~~~~~~----~~~~l 141 (397)
+..|.+++++|+++++.....+...+...+ .++.|.++|-+- ||+-++++.++..++.+..+..+ +....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 456779999999999999888887777755 688999999763 44555567777666666555533 45666
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecC--CCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAP--QNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~ 215 (397)
.+.-++..+|......+..+.+.|... ++.||...+.......+|.+++..+++.+ ++|+.|.+.+++..+..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 677788889999999999999999884 33467777888888888988888888766 788888888776666655
Q ss_pred hhcccc
Q 015963 216 GLFFIP 221 (397)
Q Consensus 216 ~~~~~~ 221 (397)
..++++
T Consensus 170 ~~~~~~ 175 (433)
T PF03092_consen 170 VALFLL 175 (433)
T ss_pred HHHHhh
Confidence 444433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-08 Score=90.18 Aligned_cols=132 Identities=13% Similarity=-0.032 Sum_probs=101.8
Q ss_pred HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhh
Q 015963 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVIS 156 (397)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 156 (397)
++.+|.++.+.++....+.++..++.++.|++.||+|+|+++..+.++..++..+..+.++.. -+..-.+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999888887777766666543 3456778999999999
Q ss_pred hhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHHhHHHHH
Q 015963 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCT 211 (397)
Q Consensus 157 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~f~~~~~~~~ 211 (397)
|...+...|..++ +.+.+.++..... +|..++|.+.+.+ | -|..|++..+..+
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~ 423 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhHHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999998874 4566666665433 4555665555554 4 4666665444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-09 Score=91.52 Aligned_cols=143 Identities=12% Similarity=0.019 Sum_probs=108.2
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHH
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-------DSSFLFMGRLL 147 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~-------~~~~l~~~r~l 147 (397)
.++++|+.+..+.+.....+.+...+..+.+|+++||+|.+|++........++..+.+... +....++.-+.
T Consensus 244 ~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (417)
T COG2223 244 YLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA 323 (417)
T ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999988888888877763 34444443444
Q ss_pred HHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHhhhc
Q 015963 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF 218 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~~~~ 218 (397)
.++..|.........+..++| ++-|.+.|+.....++|...-|..-+.. +++..|++.....+++.+..+
T Consensus 324 l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 324 LFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred HHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445556666665 5778889999999999876666555443 588888888777776666443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-07 Score=80.97 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=90.5
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCC
Q 015963 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN 170 (397)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 170 (397)
.++-+....+++++.+.+.|+.|.|..+.++...+....+..-+-+ -+.++.+..+.|+|.+..+...-.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 7788888899999999999999999999999999998888777655 567888999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhh
Q 015963 171 MRGSLGSVNQLSVTIGIMLAYLLG 194 (397)
Q Consensus 171 ~r~~~~~~~~~~~~~g~~~~~~i~ 194 (397)
.+.+..++.-.....+.++|..+-
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999998888777777777775554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-08 Score=88.92 Aligned_cols=149 Identities=12% Similarity=0.095 Sum_probs=99.4
Q ss_pred ccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcc---hhHHH-HHHHHHHHHHHHHHhhcchhHHHHHHH
Q 015963 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR---KGSLM-IAAVPNIIGWLIISFSKDSSFLFMGRL 146 (397)
Q Consensus 71 ~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---r~~~~-~~~~l~~~~~~~~~~~~~~~~l~~~r~ 146 (397)
.-+|.+.++.|.+.. .+...++..+...++ .++++||.+| |+... ...++.++.....+...+....++.-.
T Consensus 213 ~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIG 288 (368)
T ss_pred HHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 346666677777754 555555555555554 4677777654 33333 234444555545555555555555566
Q ss_pred HHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHhHHHHHHHHhhhccccCC
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPES 223 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--~w~~~f~~~~~~~~~~~~~~~~~~e~ 223 (397)
+.|++.....+...++..|.+|++.|+++.|+.+....+|...+|.+.+.+ +-+..|.+.+++.++..+....++++
T Consensus 289 l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~ 367 (368)
T TIGR00903 289 IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLPND 367 (368)
T ss_pred HHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 777777777777888999999999999999999999999998888777544 66677777666666655444343543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-08 Score=90.93 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=90.4
Q ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHHHhhhhhhh
Q 015963 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFLFMGRLLEGFGVGVISY 157 (397)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 157 (397)
+.+..+++.++..++..++.+++++++||+|+|+.+.++..+..++.+.... .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777899999999999999999999999888877766655432 34566777778889999999999
Q ss_pred hhhhhhheecC-------CCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 158 TVPVYIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 158 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
...++++|..+ .|+.|..++......-+|..+++.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999965 23346678888888888888887776554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-06 Score=76.99 Aligned_cols=126 Identities=6% Similarity=0.028 Sum_probs=95.2
Q ss_pred cHHHHHHhhcC-----CchhhHHHHhhhHHHHHHH-HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh----c-----
Q 015963 72 TQAEIISDLKL-----TISEFSIFGSLANVGAMVG-AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS----K----- 136 (397)
Q Consensus 72 ~~~~i~~~~~~-----s~~~~~~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~----~----- 136 (397)
++-.+++.+.+ +.+.+.++-+...+..++. .++.+++++|++|++.+-.....+.....++++. +
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 34457777765 3357899988887777666 8999999999999999988777777777666654 1
Q ss_pred ----------------------chhHHHHHHHHHHHhhhhhhh-hhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015963 137 ----------------------DSSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (397)
Q Consensus 137 ----------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 193 (397)
+.|...+..+...+-...... .-..+.+|.++.++-.|..++...+.++|.++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333444455555555555 668899999999999999999999999999999988
Q ss_pred hhhh
Q 015963 194 GLFV 197 (397)
Q Consensus 194 ~~~~ 197 (397)
..++
T Consensus 185 ~~~~ 188 (472)
T TIGR00769 185 IKYF 188 (472)
T ss_pred HHHH
Confidence 7665
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.9e-09 Score=70.46 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=74.7
Q ss_pred hhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHH
Q 015963 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (397)
Q Consensus 62 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l 141 (397)
.|+.+..++|++|.+++|.++|.++.+++.+..++||.+|.+...++.++..+++.+..+.+...+..+.+++.++.+..
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 46677888999999999999999999999999999999999999999999888999999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-08 Score=82.39 Aligned_cols=144 Identities=13% Similarity=0.059 Sum_probs=107.0
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH-HHHHHhhcchhHHHHHHHHHHHhhh
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG-WLIISFSKDSSFLFMGRLLEGFGVG 153 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~r~l~G~~~g 153 (397)
..++.+|+|+...+.+.+....-.++.+++.|.++||+|++...+.+..+..+. -....++ ++.=.++-.+.|+..+
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYS 367 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHH
Confidence 478999999999999999999999999999999999999998887765554443 3333332 2333456677888777
Q ss_pred hhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----h--hH-HHHHHhHHHHHHHHhhhccc
Q 015963 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N--WR-VLAVLGVLPCTLLIPGLFFI 220 (397)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~--w~-~~f~~~~~~~~~~~~~~~~~ 220 (397)
.........++...|+++.|.+.+..+...++|..+.|++++.+ + |- ..|+..+.+++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 66665667778888889999999999999999999999999877 2 33 33344444554444444443
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-07 Score=86.28 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=86.9
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHhhhhhhhhhhhh
Q 015963 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SKDSSFLFMGRLLEGFGVGVISYTVPVY 162 (397)
Q Consensus 85 ~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 162 (397)
+..+.+.....+...++.+++++++||+|+|+.+..+.++..++.+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677888889999999999999999999887766654443322 3467777888899999999999999999
Q ss_pred hheecCC-------CcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 163 IAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 163 i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
++|..+. ++.|...+..+....+|..+|+.+++.+
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998752 2336677888888888888888777654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-07 Score=83.85 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=95.7
Q ss_pred HHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---Hh--hcchhHHHHHHHH
Q 015963 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SF--SKDSSFLFMGRLL 147 (397)
Q Consensus 73 ~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~---~~--~~~~~~l~~~r~l 147 (397)
.|.+.+++|.+..+.++....+.++..++.+..+++.||+|+|+......++.+++.+.. .. .++.+.+++...+
T Consensus 226 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (401)
T PRK11043 226 SPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV 305 (401)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 455667789999999998888889999999999999999999987766655555444332 22 3455556666778
Q ss_pred HHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
.|++.+..++...+...|..| ++|+++.++.+.....+...++.+.+.+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 306 MAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 899999999988888777765 6899999999887777777777776665
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-07 Score=84.24 Aligned_cols=126 Identities=20% Similarity=0.085 Sum_probs=95.6
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH-HHHHHHHh--hcchhHHHHHHHHHHHh
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI-IGWLIISF--SKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~-~~~~~~~~--~~~~~~l~~~r~l~G~~ 151 (397)
.+.+.+|.+..+.+++......+..++.++.+++.||++++........+.. +....... ..+.+.+.+..++.|++
T Consensus 233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (394)
T PRK11652 233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG 312 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3455589999999999999999999999999999999984433322222222 22222222 23556777788999999
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRV 201 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~w~~ 201 (397)
.+...+...++..|..| ++++.+.++.+....+|..+++.+++.+..+.
T Consensus 313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 99999999999999886 68899999999999999999999988874333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=89.24 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=99.0
Q ss_pred hHHHHhhhHHHHHHHHHHH----HHHHhhhcchhHHHHHHHHHHHHHHHHHhhcc---------hhHHHHHHHHHHHhhh
Q 015963 87 FSIFGSLANVGAMVGAIAS----GQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD---------SSFLFMGRLLEGFGVG 153 (397)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~----g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g 153 (397)
.++..++..+...+..++. +++.||++.++.+.+|.++.+++.+..+.+.+ .+.++..+++.|+|++
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4566666666666666665 66666666778889999999999988777654 4578889999999999
Q ss_pred hhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--------------hhHHHHHHhHHHHHHH
Q 015963 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRVLAVLGVLPCTLL 213 (397)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------~w~~~f~~~~~~~~~~ 213 (397)
...|...+++.+..|++.||+++|.+..+..+|..++..+.... +.++.|...++..++.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 471 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVI 471 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888877666421 2567776666554433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=85.87 Aligned_cols=129 Identities=21% Similarity=0.158 Sum_probs=104.0
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhcc-----hhHH--HHHHHHHHHHHHHHHh---------hcchhHHHHHHHHHHH
Q 015963 87 FSIFGSLANVGAMVGAIASGQIAEYIGR-----KGSL--MIAAVPNIIGWLIISF---------SKDSSFLFMGRLLEGF 150 (397)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-----r~~~--~~~~~l~~~~~~~~~~---------~~~~~~l~~~r~l~G~ 150 (397)
.+++.++..+...+.+++..++-.|.+| +... .+|.++.+++.+..++ ..|++.+++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6788888888888888886654444443 3333 7788888888887764 4688999999999999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~ 215 (397)
|+....|...+++.+..|++.||+++|++.....+|..+++.+.... +|.+.|...++..++..+
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGV 462 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887654 677777666655554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=89.09 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=116.4
Q ss_pred HhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh----------hcchhHHHHHHHH
Q 015963 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF----------SKDSSFLFMGRLL 147 (397)
Q Consensus 78 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~----------~~~~~~l~~~r~l 147 (397)
+.+|.++.+.|.+.+...++..++....+++.+|++.|+++.++.++.+++.+.... .++.+.+...-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 468999999999999999999999999999999999999999999999998865431 1344455566889
Q ss_pred HHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h-----hH--HHHH-HhHHHHHHHHh
Q 015963 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-----WR--VLAV-LGVLPCTLLIP 215 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-----w~--~~f~-~~~~~~~~~~~ 215 (397)
.+++.+........++.+..|++.++...++.+...++|..+++.+++.+ | ++ +..+ ++.+..++.+.
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~ 440 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP 440 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877665 3 33 3322 23344444444
Q ss_pred hhccccC
Q 015963 216 GLFFIPE 222 (397)
Q Consensus 216 ~~~~~~e 222 (397)
...++|+
T Consensus 441 ~~~llP~ 447 (468)
T TIGR00788 441 LLHLLPR 447 (468)
T ss_pred HHHhCCC
Confidence 4557785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=86.36 Aligned_cols=126 Identities=10% Similarity=-0.117 Sum_probs=83.1
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH-hh-----cchhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 015963 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS-FS-----KDSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (397)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~-~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (397)
..+..+...+..+++|+++||+|+||++.++.+...++..... .. .+++.+.+.-+...++.|........++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 4445677888999999999999999999988877777664322 22 24555555554444445555555555666
Q ss_pred eecCC---------------------CcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHhh
Q 015963 165 EIAPQ---------------------NMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 165 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~~ 216 (397)
+++|+ ++-|.+.|+......+|..+-|.+-+.. ++...|+...+..+++++.
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 449 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLL 449 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 66653 1346677888888888777777554333 5777777777666655544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=75.09 Aligned_cols=168 Identities=17% Similarity=0.120 Sum_probs=127.3
Q ss_pred CcchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh-cchhHHHHHH
Q 015963 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAA 122 (397)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~ 122 (397)
+++..|.+.+.+.+.++..+.. ..-+|.+..|-|+|..+.|++.+...+.....++....+.+|. .+|+..+...
T Consensus 206 ~~~~aW~vtLfmGlqS~~~Y~~----~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~ 281 (395)
T COG2807 206 RSPLAWQVTLFMGLQSLLYYIV----IGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL 281 (395)
T ss_pred cCchhHHHHHHHHhhHHHHHHH----HHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 4445666766666665544432 2457889999999999999999999999999999999999965 5677777778
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCc-chhHHHHHHHHHHHHHHHHHHhhhhh----
Q 015963 123 VPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (397)
Q Consensus 123 ~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~i~~~~---- 197 (397)
.++.++.+.+.+.+.-..+.- -++.|+|.|..++.....+.+..+..+ -++..++.+....+=..+||.+.+++
T Consensus 282 ~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~ 360 (395)
T COG2807 282 LLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT 360 (395)
T ss_pred HHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence 888888888878765443333 499999999999999999998886443 45556666666666666788888887
Q ss_pred -hhHHHHHHhHHHHHHHHhh
Q 015963 198 -NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 198 -~w~~~f~~~~~~~~~~~~~ 216 (397)
+|+...+..+...+...+.
T Consensus 361 gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 361 GSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred CChHHHHHHHHHHHHHHHHH
Confidence 8998887776666655443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-06 Score=74.02 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=116.8
Q ss_pred HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHh-hhcchhHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHh
Q 015963 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-YIGRKGSLMIAAVPNIIGWLIISF---SKDSSFLFMGRLLEGFG 151 (397)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~r~l~G~~ 151 (397)
=.+-||.|..+...++..+..|..++-...|++.. |.++|+...+++.+..++..+..+ ..+.+.+...-++.|++
T Consensus 235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g 314 (403)
T PF03209_consen 235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLG 314 (403)
T ss_pred hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 34558999999999999999999999999999888 677888887888877777666444 46788999999999999
Q ss_pred hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh--------------hhHHHHHHhHHHHHHHHhh
Q 015963 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------~w~~~f~~~~~~~~~~~~~ 216 (397)
.|.......+...+...+++.|..+|.|.....++..++..+++.. +|-..|.+.++..++.+.+
T Consensus 315 ~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 315 NGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888877654 4666777766655555443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=86.38 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhhcccccCcccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcc---------hhHHHH
Q 015963 51 CVLVVALGPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR---------KGSLMI 120 (397)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr---------r~~~~~ 120 (397)
.+..+.++.+...+....+....|. +.+-+|.+..+.|++.++..+...+..+++|.++||.-+ |..-.+
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhH
Confidence 3444555555555555555556664 555689999999999999999999999999999998755 333335
Q ss_pred HHHHHHHHHHHHHhhcchhH-HHHHHHHHHHhhhhhhhhh-hhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh-
Q 015963 121 AAVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTV-PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV- 197 (397)
Q Consensus 121 ~~~l~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~- 197 (397)
+....+++.+..++.++-.. ..+.-...+.+..+....+ ..-..|. .+++-+..+++.+....+..+++|.+.+.+
T Consensus 339 ~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~ 417 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIV 417 (466)
T ss_pred HHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence 56666666666666653211 1222222222222222222 2222232 457789999999999999999999998776
Q ss_pred ------hhHHHHHHhHHHHHHHHhhhcc
Q 015963 198 ------NWRVLAVLGVLPCTLLIPGLFF 219 (397)
Q Consensus 198 ------~w~~~f~~~~~~~~~~~~~~~~ 219 (397)
.||+.|++.+++.++.-+.+.+
T Consensus 418 ~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 418 TDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 7999999998887777554443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=86.29 Aligned_cols=111 Identities=12% Similarity=0.145 Sum_probs=84.3
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh--c--chhHHHHHHHHHHH
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--K--DSSFLFMGRLLEGF 150 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~--~--~~~~l~~~r~l~G~ 150 (397)
.+++.+|.+..+.+++.+.+.+...++.++.|+++||+|||+.+..+..+...+..+..+. + +.+.+.+.-.+.++
T Consensus 251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (366)
T TIGR00886 251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF 330 (366)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999999999999998888777766666555543 2 45555555555556
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHH
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 186 (397)
+.|...+...+.+.+..| +++|.+.|+.+....+|
T Consensus 331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 666666666677778776 78999999887766554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00012 Score=66.86 Aligned_cols=306 Identities=14% Similarity=0.003 Sum_probs=147.0
Q ss_pred HHHhhhcccccCcccHHHHHHhhcC-CchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh-
Q 015963 58 GPIQFGFTCGYSSPTQAEIISDLKL-TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS- 135 (397)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~i~~~~~~-s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~- 135 (397)
+.+....+.-+.....+.+..+..- +---.+...-.-.+...+.++..|.+.||..|.++...+.+..-++..+.+..
T Consensus 10 sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~ 89 (432)
T PF06963_consen 10 SHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALF 89 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555421 22223333334455667888889999999999998877765554444333221
Q ss_pred -------c----chhHH---HHHHHHHHHhhhh-hhhhhhhhhheecC------CCcchhHHHHHHHHHHHHHHHHHHhh
Q 015963 136 -------K----DSSFL---FMGRLLEGFGVGV-ISYTVPVYIAEIAP------QNMRGSLGSVNQLSVTIGIMLAYLLG 194 (397)
Q Consensus 136 -------~----~~~~l---~~~r~l~G~~~g~-~~~~~~~~i~~~~~------~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (397)
+ +-+.. ++.-.+.|.-.-. ......+.=.||.. ++.+.+..+...-.=-+.-+++|++.
T Consensus 90 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~v 169 (432)
T PF06963_consen 90 LLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFV 169 (432)
T ss_pred HHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11222 2222222211111 11122223344432 22333344443333334566666666
Q ss_pred hhh----hhHHHHHHhHHHHHHHHhh-hcc---c-cCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhc
Q 015963 195 LFV----NWRVLAVLGVLPCTLLIPG-LFF---I-PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSS 265 (397)
Q Consensus 195 ~~~----~w~~~f~~~~~~~~~~~~~-~~~---~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (397)
+.+ +.+...++.+...++..+. +++ + ...|. +..+++.++.......- +.....+.....+...+.-
T Consensus 170 G~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 245 (432)
T PF06963_consen 170 GLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE---SSSESSSDPSILKRLWNPL 245 (432)
T ss_pred HHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc---ccccccchhhHHHHHHHHH
Confidence 555 6666666666655555442 222 1 22222 22221111100000000 0000000001111111111
Q ss_pred chhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh
Q 015963 266 RRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKA 343 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~ 343 (397)
......|+..++++.+.+.+-..+++.- . -.+......|+...|+++.. ..-....+.++.|+++..++.+|+
T Consensus 246 ~~~~~~w~~Y~~q~vflas~alalLY~T-V----Lsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri 320 (432)
T PF06963_consen 246 RTIIRGWRTYFRQPVFLASFALALLYFT-V----LSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI 320 (432)
T ss_pred HHHhccHHHHHhCHHHHHHHHHHHHHHH-H----hcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223456666666544443332222222 2 22334455666677997776 455567788999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015963 344 GRRLLLLISSSGMAASFFLVSVAFFLEVG 372 (397)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (397)
|..+.-.++.....++..+....++.+.+
T Consensus 321 Glvr~G~~~l~~q~~~L~~~v~~~~~~~~ 349 (432)
T PF06963_consen 321 GLVRAGLWSLWWQWVCLALCVVSFWAPGS 349 (432)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99888778877777666666655555443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-06 Score=78.74 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=75.6
Q ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhhhhhhhhhh
Q 015963 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISYTVP 160 (397)
Q Consensus 83 s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~ 160 (397)
+++..+.+.+.+.++..++.+++++++||+|+|+.+..+..+.++..++..+.+ +...+++.-++.|++.+...+...
T Consensus 261 ~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~ 340 (460)
T PRK11462 261 TPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW 340 (460)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888899999999999999999999987765554444344333332 233344555677888777777767
Q ss_pred hhhheecC-------CCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 161 VYIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 161 ~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
+++.|..+ .++.|...+......-+|..+++.+++.+
T Consensus 341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777765 22235555666666666666666655443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=86.08 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=120.4
Q ss_pred HHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhh
Q 015963 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVG 153 (397)
Q Consensus 74 ~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 153 (397)
-.-.+|++-.+.-.|.....-..|-.+.-++.+++.+|+|+-+++..++....+=.+..+..+|.|+.+...+++|+..+
T Consensus 395 fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~a 474 (618)
T KOG3762|consen 395 FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHA 474 (618)
T ss_pred HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHH
Confidence 34567777677777877788888888999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhheecCCCcchhHHHHHHHH-HHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhh
Q 015963 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~ 216 (397)
..+.+..+|+++..||+.|..+.++.+.. .++|-.+|.+|++.+ +=|..|.+.++.+++.++.
T Consensus 475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886543 566666666666655 7777777777666655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-06 Score=81.17 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=91.3
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhcchhH-------HHHHHHHHHHHHHHHH-----hh-----cchhHHHHHHHHHH
Q 015963 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGS-------LMIAAVPNIIGWLIIS-----FS-----KDSSFLFMGRLLEG 149 (397)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-------~~~~~~l~~~~~~~~~-----~~-----~~~~~l~~~r~l~G 149 (397)
.+++.+...+...+..++.+++.||+|+|+. +.+|.++.+++.+..+ .+ .+.+.++...++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3556666677788899999999999999974 7778888777764321 21 35677788899999
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
+|++...+...+++.+..|++.++.+++++.....+|..++..++...
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998887433
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.1e-06 Score=75.60 Aligned_cols=117 Identities=16% Similarity=0.242 Sum_probs=92.6
Q ss_pred hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhhhhhhh
Q 015963 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISY 157 (397)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~ 157 (397)
+|-++.+..+.......+..++.+++.++++|+|+|+++..+.++..++.++..+.+ +.+.+++..++.++|.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 454555666777778888888899999999999999999999999999999988876 678888889999999999999
Q ss_pred hhhhhhheecCC-------CcchhHHHHHHHHHHHHHHHHHHhhhh
Q 015963 158 TVPVYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (397)
Q Consensus 158 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~i~~~ 196 (397)
...+.++|..+- |+-|...+......=+|..++..+.++
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888752 222556666665555666666554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-06 Score=78.59 Aligned_cols=124 Identities=14% Similarity=-0.008 Sum_probs=92.3
Q ss_pred ccHHHHHHhh--cCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 015963 71 PTQAEIISDL--KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (397)
Q Consensus 71 ~~~~~i~~~~--~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 148 (397)
..++...++. +.+....+...+.+..+..++.++.+++.||+++|+++.++.++..+..++..+.++... ...-.+.
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC 331 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 3344444443 334444555677777888999999999999999999999999999999888888777544 5667888
Q ss_pred HHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
|++.+..+|...+...+..+++.+.-...+.. + .+|..+.|.+.+.+
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~ 378 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFI 378 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHH
Confidence 89999999999999999998555433333333 2 37888888777665
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=81.91 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=118.0
Q ss_pred cccccCcccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHhhcchhH
Q 015963 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKDSSF 140 (397)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~l~~~~~~~~~~~~~~~~ 140 (397)
...+..-|.++. +.|.+..+.-+.|...--..+.+.++..+.|.++||++ |-.....+++..++.+....+++++.+
T Consensus 284 ~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~ 363 (464)
T KOG3764|consen 284 SSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ 363 (464)
T ss_pred chHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH
Confidence 455556677776 56667744448888888888999999999999999999 544444567777777777788999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhheecCCCc------chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHH
Q 015963 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNM------RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (397)
Q Consensus 141 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~ 210 (397)
+.+-++..|++.+...........+..+.++ -|...++...++++|..+||.+++.+ |++|.-.+.++..
T Consensus 364 L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n 443 (464)
T KOG3764|consen 364 LWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILN 443 (464)
T ss_pred HhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHH
Confidence 9999999999888887777666666665433 36788999999999999999999887 8888877777666
Q ss_pred HHHHh
Q 015963 211 TLLIP 215 (397)
Q Consensus 211 ~~~~~ 215 (397)
++-..
T Consensus 444 ~iyap 448 (464)
T KOG3764|consen 444 LIYAP 448 (464)
T ss_pred HHHHH
Confidence 65443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-06 Score=65.84 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=93.4
Q ss_pred CCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhh
Q 015963 82 LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPV 161 (397)
Q Consensus 82 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 161 (397)
+++..--.-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-++.|++.+..++....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 333334445677777888899999999999999999999999988665544 4567788999999999999999999999
Q ss_pred hhheecCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 015963 162 YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (397)
Q Consensus 162 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 195 (397)
++.+..++++|++..++.......+.++|.++..
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888887778777766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.49 E-value=6e-06 Score=76.47 Aligned_cols=137 Identities=12% Similarity=-0.001 Sum_probs=106.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhcc---------------------hhHHHHHH
Q 015963 88 SIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSKD---------------------SSFLFMGR 145 (397)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~~~~~~~~~~~~---------------------~~~l~~~r 145 (397)
.+....+.+...+.+++.-++.+|+|+ |+...++.++.+++.....+.++ .+..++.-
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 344555566666777888899999995 77779998888888887775443 26677888
Q ss_pred HHHHHhhhhhhhhhhhhhheecCC--CcchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhHHHHHHHHh-h
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIP-G 216 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~f~~~~~~~~~~~~-~ 216 (397)
.+.|+..+..+...++++++..++ ++.|..+|+.+.+..+.+++..+..+.+ +-.+.+.+.++..+++.+ .
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 4559999999999999999888766554 345778888887777655 4
Q ss_pred hccccCCh
Q 015963 217 LFFIPESP 224 (397)
Q Consensus 217 ~~~~~e~~ 224 (397)
.+.+|+++
T Consensus 468 ~~~~~~~~ 475 (477)
T TIGR01301 468 LILLPRPR 475 (477)
T ss_pred HHhCCCCC
Confidence 55677764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-06 Score=80.00 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=111.4
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHhhhhhhhhhhhh
Q 015963 86 EFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLLEGFGVGVISYTVPVY 162 (397)
Q Consensus 86 ~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~ 162 (397)
+.++....+.++..+++.+.|.+..+++| |+.++++.++..+++-+++.. +|....+..-++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 57888888999999999999999999988 566667777776654444433 466666778899999999988888888
Q ss_pred hheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---------------------------------------------
Q 015963 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------------------------- 197 (397)
Q Consensus 163 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~--------------------------------------------- 197 (397)
..-..|+++-+.+.++....-.+|..+|..+...+
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~i 509 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAI 509 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhC
Confidence 88888989999999998888888777775554211
Q ss_pred ---------------------hhHHHHHHhHHHHHHHHhhhccccCChhHH
Q 015963 198 ---------------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227 (397)
Q Consensus 198 ---------------------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~ 227 (397)
++|+.|+....++.++++..++++|..+++
T Consensus 510 PGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m 560 (599)
T PF06609_consen 510 PGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM 560 (599)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence 288999999999999988888888765544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-09 Score=99.66 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=96.4
Q ss_pred cHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH--h---hcc----hhHHH
Q 015963 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F---SKD----SSFLF 142 (397)
Q Consensus 72 ~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~--~---~~~----~~~l~ 142 (397)
..+.+.++.+.+.. -.......+...++.++...+.||+|||+.++.+..+.+++.+..+ . .++ -...+
T Consensus 275 ~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 352 (451)
T PF00083_consen 275 YSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI 352 (451)
T ss_pred cccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34556777777666 2222334455556777777999999999999999988888887775 1 121 11122
Q ss_pred HHHHHHHHhhh-hhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHH-HHHHHHhh
Q 015963 143 MGRLLEGFGVG-VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL-PCTLLIPG 216 (397)
Q Consensus 143 ~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~-~~~~~~~~ 216 (397)
+.-.+...+.+ +..+....+..|.+|.+.|+++.++......++..+++.+...+ +-...+.+.+. ..+..++.
T Consensus 353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~ 432 (451)
T PF00083_consen 353 VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFV 432 (451)
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhe
Confidence 22222222222 34466668889999999999999998888888887777666554 31233444443 34444556
Q ss_pred hccccCCh
Q 015963 217 LFFIPESP 224 (397)
Q Consensus 217 ~~~~~e~~ 224 (397)
.+++||+.
T Consensus 433 ~~~lpET~ 440 (451)
T PF00083_consen 433 YFFLPETK 440 (451)
T ss_pred eEEEeeCC
Confidence 77899984
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-05 Score=65.83 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=74.8
Q ss_pred cccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 015963 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G 149 (397)
+|.+-.+-+.++....+++.+...-.-...+...+.|-++||.|||+.-+.-.+-+.++| +.-.++.+-.+.++|.+-|
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhh
Confidence 455556777889999999998888888888999999999999999996554444443333 2345678889999999999
Q ss_pred Hhhhhhhhhhhhh-hheec
Q 015963 150 FGVGVISYTVPVY-IAEIA 167 (397)
Q Consensus 150 ~~~g~~~~~~~~~-i~~~~ 167 (397)
+..+..+.+-.++ +.|.-
T Consensus 136 iaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999988887665 45544
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.8e-07 Score=81.00 Aligned_cols=176 Identities=18% Similarity=0.032 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHH--------HHh-hhHHHHHHHHHHHHHHHhhhcchhHHHH
Q 015963 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSI--------FGS-LANVGAMVGAIASGQIAEYIGRKGSLMI 120 (397)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~--------~~s-~~~~~~~~~~~~~g~l~dr~Grr~~~~~ 120 (397)
..++..+...|+.-+.....+.....+-+..++.+++... ... +-..++..+-.+...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 4445556666666666666666777888877765544322 111 1223333466667788999999999999
Q ss_pred HHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHh-hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 015963 121 AAVPNIIGWLIISFSKD----SSFLFMGRLLEGFG-VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (397)
Q Consensus 121 ~~~l~~~~~~~~~~~~~----~~~l~~~r~l~G~~-~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 195 (397)
|.+++.+..+..+...| -..+++...+..+. .-+.......+-+|.+|.+-|+...|+..+..-.|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999999999888766 22333333333322 21223334556789999999999999999998888888866543
Q ss_pred hh---------hhHHHHHHhHHHHHHHHhhhccccCChh
Q 015963 196 FV---------NWRVLAVLGVLPCTLLIPGLFFIPESPR 225 (397)
Q Consensus 196 ~~---------~w~~~f~~~~~~~~~~~~~~~~~~e~~~ 225 (397)
+. +.|+.+++.+...++.++..+++||+.+
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 33 7889999999999999888888998853
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-05 Score=66.99 Aligned_cols=256 Identities=14% Similarity=0.180 Sum_probs=158.3
Q ss_pred hhcCCchhhH-HHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhh
Q 015963 79 DLKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISY 157 (397)
Q Consensus 79 ~~~~s~~~~~-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 157 (397)
+.|++.++.. -+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.....-.+..+.++.+.+-+..+..|... ....
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t-AaEI 113 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT-AAEI 113 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH-HHHH
Confidence 4456655542 2334445566677777778999999999999988888888889999999999999999999877 5567
Q ss_pred hhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh------hhHHHHHHhHHHHHHHHhhhccccCChhHHHhcC
Q 015963 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMG 231 (397)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 231 (397)
+.++++-+..+++++-++.+..-++.-.|...|..++..+ +++..=.+......++.....++|..+|.+.-+.
T Consensus 114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~ 193 (433)
T KOG3810|consen 114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHR 193 (433)
T ss_pred hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhc
Confidence 7889999999999999999998888888888888887766 3444445555555556666677887765433222
Q ss_pred CHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHh
Q 015963 232 MTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA 311 (397)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (397)
..++.. ....+..+. +....+..+.....+.+-+..-..++.+....+.+....++++-..+|...+-+
T Consensus 194 ~~~~~~--v~~~e~~~~---------~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~ 262 (433)
T KOG3810|consen 194 LEDKIS--VGDLEEMNP---------QASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWK 262 (433)
T ss_pred ccccce--eccchhcCc---------cchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHH
Confidence 222110 000000000 000000000111112211222223334445555666666777777778777776
Q ss_pred hcCCCchh----HHHHHHHHHHHHHHHHHHHHHHHhchh
Q 015963 312 NAGISSSN----VATFGLGVVQVVATGVNTWLMDKAGRR 346 (397)
Q Consensus 312 ~~g~~~~~----~~~~~~~~~~~~~~~~~~~l~d~~~~~ 346 (397)
+..-.+.. ..=.+..+.++++.+..|.+.-.+.|+
T Consensus 263 ~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~ 301 (433)
T KOG3810|consen 263 EVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRW 301 (433)
T ss_pred hhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchh
Confidence 65422222 223344556677788888876666664
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-06 Score=57.70 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=53.9
Q ss_pred hcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 015963 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (397)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l 124 (397)
....+...|.+|...++.|+|..++|.+.++..+...++.+++|.++||+++++..+....+
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 33556667888888889999999999999999999999999999999999999887766544
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.1e-05 Score=69.59 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=85.7
Q ss_pred HHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH-----hhcchhHHHHHHH
Q 015963 73 QAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS-----FSKDSSFLFMGRL 146 (397)
Q Consensus 73 ~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~-----~~~~~~~l~~~r~ 146 (397)
.|. +++.+|.+..+.++.......+..++..+.+++.++.++++.......+..++..+.. ..++++..++..+
T Consensus 241 ~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~ 320 (413)
T PRK15403 241 SPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTS 320 (413)
T ss_pred ChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 343 4556799999999998888888889888888877555554443333333333333222 1234444567888
Q ss_pred HHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHH
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVL 208 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~ 208 (397)
+.++|.+...+...+..- .-....+|++.++.+.....+..+++..++++ +=++.|...++
T Consensus 321 l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 384 (413)
T PRK15403 321 LYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAV 384 (413)
T ss_pred HHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 889999888887764332 11233478888888777777777777777665 33345544443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.2e-05 Score=72.14 Aligned_cols=160 Identities=16% Similarity=0.065 Sum_probs=100.4
Q ss_pred cccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcch-----
Q 015963 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS----- 138 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~----- 138 (397)
..........+.+-+..+.+.+. .+...+..+...++..+...+.||+|||+.++.+...+.++.++.+.....
T Consensus 309 tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~ 387 (513)
T KOG0254|consen 309 TGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYP 387 (513)
T ss_pred hCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Confidence 33445555667777777776554 556666677777888888999999999999999999999999988754211
Q ss_pred --------hHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhh-hhh---hhHHHHHHh
Q 015963 139 --------SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-LFV---NWRVLAVLG 206 (397)
Q Consensus 139 --------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~-~~~---~w~~~f~~~ 206 (397)
..+...-+.......+..+....+.+|.+|.+-|+++.++......+...+-.... ... ++...|...
T Consensus 388 ~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f 467 (513)
T KOG0254|consen 388 NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYF 467 (513)
T ss_pred CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 11122222222223344455566889999999999998886555444333222221 111 224455544
Q ss_pred HHHHH-HHH-hhhccccCCh
Q 015963 207 VLPCT-LLI-PGLFFIPESP 224 (397)
Q Consensus 207 ~~~~~-~~~-~~~~~~~e~~ 224 (397)
+.... ... ....++||+.
T Consensus 468 ~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 468 GGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred HHHHHHHHHHHheEEcccCC
Confidence 44333 334 4667789984
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0018 Score=60.24 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=77.5
Q ss_pred CchhhHHHHhhhHH-HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh---------cc---------------
Q 015963 83 TISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD--------------- 137 (397)
Q Consensus 83 s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---------~~--------------- 137 (397)
.++.+.++-....+ +..+...+..++++|++|++++-.....+.....++++. ++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 45566777664444 556667889999999999998887776666666665542 11
Q ss_pred -------hhHHHHHHHHHHHhhhhhhh-hhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 138 -------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 138 -------~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
.|.+.+..+..-+-.....+ .-..+.+|.++.+|-.|..++...+.++|.++++.+..++
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222222223333 3477899999999999999999999999999987776554
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.7e-05 Score=68.89 Aligned_cols=122 Identities=10% Similarity=0.169 Sum_probs=109.5
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHH-HHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhh
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASG-QIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVG 153 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 153 (397)
.+...++++..+.+...+.......+++++.. .+...+|-|+.+..|+....+...+.+++++.|+++....+.++..
T Consensus 267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~- 345 (463)
T KOG2816|consen 267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAG- 345 (463)
T ss_pred EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc-
Confidence 36667899999999999988888888888877 7888899999999999999999999999999999999998888754
Q ss_pred hhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
...+...+.++.+.+++++|++.++....-++..+++|.+-+.+
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 78888999999999999999999999999999999988877655
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=74.68 Aligned_cols=152 Identities=11% Similarity=-0.002 Sum_probs=100.4
Q ss_pred HHHHHHHhhhcccccCcccHHHHHHh-hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHH
Q 015963 54 VVALGPIQFGFTCGYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGSLMIAAVPNIIG 128 (397)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~~~~~~~l~~~~ 128 (397)
..++..+......+.+...+|.+.++ .|.|..+.+.+.+.+.++.+++.+++|+++|| ..+|..+.....+....
T Consensus 277 ~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~ 356 (495)
T KOG2533|consen 277 PFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAII 356 (495)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34444444555556566677777776 56899999999999999999999999999999 67777777776665555
Q ss_pred H-HHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcc-hhHHHHHHHHHHHHHHHHHHhhhh-----hhhHH
Q 015963 129 W-LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR-GSLGSVNQLSVTIGIMLAYLLGLF-----VNWRV 201 (397)
Q Consensus 129 ~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~i~~~-----~~w~~ 201 (397)
. +.....++.......-.....+.+...+......++...+..| -...+....+.+.+..++|.+-.. ..|.+
T Consensus 357 g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~ 436 (495)
T KOG2533|consen 357 GAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGA 436 (495)
T ss_pred HHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhh
Confidence 5 4444444344444444445555667777788888888765544 334455555555555555444322 25666
Q ss_pred HHHH
Q 015963 202 LAVL 205 (397)
Q Consensus 202 ~f~~ 205 (397)
.|..
T Consensus 437 ~f~~ 440 (495)
T KOG2533|consen 437 VFYM 440 (495)
T ss_pred HHHH
Confidence 6633
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=69.68 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=110.4
Q ss_pred HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhh
Q 015963 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (397)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (397)
.+.+|.++.|.|.+.+...++..+.+....+..||.. -+-.+..++.+..=..++.+.++....+.++-.+-.+..+.
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~ 368 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS 368 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999988 77788888888888888888999999999999999999999
Q ss_pred hhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
..+....++....|.++||.++|+......++-.+||++++..
T Consensus 369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 9999999999999999999999999999999999999999665
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00057 Score=59.82 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=90.5
Q ss_pred HHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHh-----hhcchhHHHH-HHHHHHH
Q 015963 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-----YIGRKGSLMI-AAVPNII 127 (397)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~l~~~ 127 (397)
...+.+...|.-.+... .+|.+.+.-|+|.++.+...-++.= .---+++.++.| |+||||.-++ +..+.+.
T Consensus 35 lLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~ 111 (510)
T KOG3574|consen 35 LLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGL 111 (510)
T ss_pred HHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHH
Confidence 34445667788777777 8898888888888777654332211 123567889999 9999986553 4444454
Q ss_pred HHHHHHhh-----------cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHh
Q 015963 128 GWLIISFS-----------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (397)
Q Consensus 128 ~~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 193 (397)
.+...+.. ++...+....++.-+..+.-..+.-.+.-.+..+++-|.+......+...|..++..+
T Consensus 112 ~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 112 FMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 44444432 2333333445666677777778888888888888888888777777777776666443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00061 Score=61.24 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=92.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheec
Q 015963 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (397)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 167 (397)
+.+.-+-.+-..+..+.+.++.+|...+.-......+..++.++.+++++.+.=+++-++.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 33444555666777778888999998776677788899999999999999998889999999999888887777644 45
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhhhh-----hhHHHHHHhHHHHHHHHhhhc-cccC
Q 015963 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPE 222 (397)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~-----~w~~~f~~~~~~~~~~~~~~~-~~~e 222 (397)
++ ...+.+..+.+.+.++|+..-..+ +-|..+.+...+.++..+.++ .+|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43 346777777777777776554333 446667666665554544433 4443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.9e-05 Score=65.72 Aligned_cols=128 Identities=17% Similarity=0.099 Sum_probs=101.5
Q ss_pred ccCcccHHHHHHh-hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 015963 67 GYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (397)
Q Consensus 67 ~~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r 145 (397)
......++.+.+| .|.++.+.+...+.+..+..+|.++..++..|+...|.+.+..+...+-++..+++++...+ .+-
T Consensus 253 va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l 331 (422)
T COG0738 253 VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YAL 331 (422)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHH
Confidence 3334455555555 88899999999999999999999999999999999999999999999999999999995544 456
Q ss_pred HHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
++.|+..+..+|...+...+..+ ++- ...|..-....+|..+-|.+.+++
T Consensus 332 ~~ig~F~simfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 332 FLIGLFNSIMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHHH
Confidence 78899999999999999999988 333 333444445556777777777666
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.012 Score=53.83 Aligned_cols=125 Identities=10% Similarity=0.071 Sum_probs=89.7
Q ss_pred HHHHHHhhcC---CchhhHHHHhhhHH-HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh---------cc--
Q 015963 73 QAEIISDLKL---TISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD-- 137 (397)
Q Consensus 73 ~~~i~~~~~~---s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---------~~-- 137 (397)
+-.+.+.+.+ .++.++++-+..-+ +..+..++.+++++++.|++++-.-...+....+++++. ++
T Consensus 46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~ 125 (509)
T COG3202 46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPE 125 (509)
T ss_pred HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHH
Confidence 3446666654 45567888888877 778899999999999999999988887777777777653 11
Q ss_pred ---------h------------hHHHHHHHHHHHhhhhhhh-hhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q 015963 138 ---------S------------SFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (397)
Q Consensus 138 ---------~------------~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 195 (397)
. |...+...+.-+=.+.... .-....+|.+..+|-.|..++++.+.+++..++..+..
T Consensus 126 ~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~ 205 (509)
T COG3202 126 FSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS 205 (509)
T ss_pred HHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 2222222333332333333 34567889999889899999999999999999988887
Q ss_pred hh
Q 015963 196 FV 197 (397)
Q Consensus 196 ~~ 197 (397)
++
T Consensus 206 ~~ 207 (509)
T COG3202 206 WL 207 (509)
T ss_pred HH
Confidence 77
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0004 Score=64.87 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=88.5
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhcch-h------HHHHHHHHHHHHHHHHHhh---------cchhHHHHHHHHHHH
Q 015963 87 FSIFGSLANVGAMVGAIASGQIAEYIGRK-G------SLMIAAVPNIIGWLIISFS---------KDSSFLFMGRLLEGF 150 (397)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-~------~~~~~~~l~~~~~~~~~~~---------~~~~~l~~~r~l~G~ 150 (397)
.+|..++..+...+.+|+.+++-.|.+|| | =+.+|+++.+++.++..++ .+.+.+++..+++++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 57778888888888888888887777432 1 1677888888887766432 256778899999999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHH-HHHHHHHHHHhhhhh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLFV 197 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~~~~ 197 (397)
|+-...|+..+.+++..|+|.|++.+|.+... ..+|..++..+++..
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999774 468877777666544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00056 Score=65.16 Aligned_cols=143 Identities=13% Similarity=0.075 Sum_probs=102.9
Q ss_pred HHHHHHhh-cC-CchhhHH-HHhhhHHHHHHHHHHHHHHHhhhcch--------hHHHHHHHHHHHHHHHHHhhcchhHH
Q 015963 73 QAEIISDL-KL-TISEFSI-FGSLANVGAMVGAIASGQIAEYIGRK--------GSLMIAAVPNIIGWLIISFSKDSSFL 141 (397)
Q Consensus 73 ~~~i~~~~-~~-s~~~~~~-~~s~~~~~~~~~~~~~g~l~dr~Grr--------~~~~~~~~l~~~~~~~~~~~~~~~~l 141 (397)
..+|.+.+ |. ++++... +.+++.++.++|-+..|.+....-+| ...+....+..++.++.+++-....+
T Consensus 376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L 455 (591)
T PTZ00207 376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAAL 455 (591)
T ss_pred HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHh
Confidence 45788888 66 3332233 78999999999999999887222222 22333333366666666666443689
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHH-HHhhhhh--------------h---hHHHH
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA-YLLGLFV--------------N---WRVLA 203 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~i~~~~--------------~---w~~~f 203 (397)
++.-++.|++.|..+++....++|.|. |+-|+-..+...+..+|..+- ..+.+.+ | .|..|
T Consensus 456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~ 534 (591)
T PTZ00207 456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL 534 (591)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence 999999999999999999999999999 999998888888888887775 2333322 1 77888
Q ss_pred HHhHHHHHHHHhh
Q 015963 204 VLGVLPCTLLIPG 216 (397)
Q Consensus 204 ~~~~~~~~~~~~~ 216 (397)
++.+..++...+.
T Consensus 535 ~v~~~~~~~g~~~ 547 (591)
T PTZ00207 535 AFLLGLSFLAFIT 547 (591)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777777654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=65.28 Aligned_cols=114 Identities=19% Similarity=0.163 Sum_probs=82.3
Q ss_pred hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH-----HHHHHHhhcchhHHHHHHHHHHHhhhh
Q 015963 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII-----GWLIISFSKDSSFLFMGRLLEGFGVGV 154 (397)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~r~l~G~~~g~ 154 (397)
+.-..++..+....|.+|-.++.--...+ |+ |+..+.+.+-..- .....-+.++.|..++.-+..|+..|.
T Consensus 276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 33345678888888888766654332211 23 4444443322222 222233457889888999999999999
Q ss_pred hhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
.+.-....+.|-.++++|..+++....+-++|..++.+++-.+
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00068 Score=64.79 Aligned_cols=128 Identities=21% Similarity=0.280 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhH---HHHHHHHHHHhhhhhhhhhhhhhheecCCCcch
Q 015963 97 GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF---LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 173 (397)
Q Consensus 97 ~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~---l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 173 (397)
.........+.+.|++|||.....+.++..++.++.++..+... ..+...+...+.+..+.....+..|.+|...|.
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~ 441 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN 441 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 55566666689999999999999999999999999998865443 555566666667777777799999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh--hH-HHHHHhHHHHH-HHHhhhccccCCh
Q 015963 174 SLGSVNQLSVTIGIMLAYLLGLFVN--WR-VLAVLGVLPCT-LLIPGLFFIPESP 224 (397)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~i~~~~~--w~-~~f~~~~~~~~-~~~~~~~~~~e~~ 224 (397)
.+.+.......+|.+++|.+..... +. ..+.+.+.... ...+...++||+.
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~ 496 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETK 496 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999998875442 22 22222233333 3344457789874
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00034 Score=47.05 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=50.8
Q ss_pred HHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 015963 291 LVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSS 354 (397)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~ 354 (397)
.++..++....+..|.+.++++.|+++.+ ....+..+..+++.++.|+++||.++++.......
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34445555677888899999999998877 66667788999999999999999999877665543
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00029 Score=58.55 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=34.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHH--Hhhh-----hh--hhHHHHHHhHHHHHHHHhhhccc
Q 015963 170 NMRGSLGSVNQLSVTIGIMLAY--LLGL-----FV--NWRVLAVLGVLPCTLLIPGLFFI 220 (397)
Q Consensus 170 ~~r~~~~~~~~~~~~~g~~~~~--~i~~-----~~--~w~~~f~~~~~~~~~~~~~~~~~ 220 (397)
|+|+....+...++++|.++.. .+-. .. +|++.+.+.+++.++-++++.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777777888888877753 2222 11 79999988888776666554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0014 Score=59.88 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=96.1
Q ss_pred cccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh---hc-------chh
Q 015963 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---SK-------DSS 139 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~---~~-------~~~ 139 (397)
......+...-|+++..+|..-+.-.+....+.....++.+|+|..|.=+++.....++..++.. .+ +..
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 44444455555999999999999999999999999999999999988888887766655544432 22 223
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 140 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
.++.+-.+.-+|.=+......-++.|..|+++||...|......++--++...++-.+
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444565567778888999999999999999998888887777766665444
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0084 Score=54.87 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=81.4
Q ss_pred HHHHHHHhhhcccccCcccHHHHHHh--hcCCchhhHHHHhh-hHHHHHHHHHHHHHHHh-----hhcchhHHHHH-HHH
Q 015963 54 VVALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSL-ANVGAMVGAIASGQIAE-----YIGRKGSLMIA-AVP 124 (397)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~~~~~~~s~-~~~~~~~~~~~~g~l~d-----r~Grr~~~~~~-~~l 124 (397)
++.+.+++.|+-.+.....+|.+.++ -++|.+|.+...-+ +-.. .-+++.++.| |+||||..++= -.+
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfS---lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l 80 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFS---LKLLWAPIVDSVYSKRIGRRKSWIIPIQYL 80 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhH---HHHhhhhhhhhhcccccCCcchhhhHHHHH
Confidence 44556778888888776677888887 67888887654222 1111 2455666666 89999977653 333
Q ss_pred HHHHHHHHHhhc-------------------ch-----hHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHH
Q 015963 125 NIIGWLIISFSK-------------------DS-----SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180 (397)
Q Consensus 125 ~~~~~~~~~~~~-------------------~~-----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~ 180 (397)
.++..+..+..- +. ..+....++.=+-.+.-..+.-.+.-...++++++.+..-..
T Consensus 81 ~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqt 160 (544)
T PF13000_consen 81 SGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQT 160 (544)
T ss_pred HHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHH
Confidence 333333332211 01 122233334444455556666667777778888888877777
Q ss_pred HHHHHHHHHHHHhh
Q 015963 181 LSVTIGIMLAYLLG 194 (397)
Q Consensus 181 ~~~~~g~~~~~~i~ 194 (397)
.+.+.|..++..+-
T Consensus 161 vG~~~Gyfls~tvF 174 (544)
T PF13000_consen 161 VGQTAGYFLSFTVF 174 (544)
T ss_pred hHhhhhHHHHHHHH
Confidence 77777766665443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=60.06 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHHHhh--c-ch------hHHHHHHHHHHHhhhhhhhhhhhhhheecCCC---cchhHHHHHHHHH
Q 015963 116 GSLMIAAVPNIIGWLIISFS--K-DS------SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN---MRGSLGSVNQLSV 183 (397)
Q Consensus 116 ~~~~~~~~l~~~~~~~~~~~--~-~~------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 183 (397)
|+++++.++..+|.++..++ + +. +.++++-.+.++|.|+.=|...++.+|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788999999999885443 2 22 57889999999999999999999999999865 3566788899999
Q ss_pred HHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhcc
Q 015963 184 TIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (397)
Q Consensus 184 ~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~~ 219 (397)
++|..++..+..++ +|.+.|.++++..+++++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999888777 7999999988877777665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0036 Score=59.65 Aligned_cols=150 Identities=15% Similarity=0.114 Sum_probs=116.3
Q ss_pred ccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhhcch-------
Q 015963 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDS------- 138 (397)
Q Consensus 67 ~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~------- 138 (397)
+.....+..+.++++.+...+.-..+.+.-......+.+++++|- +||-+++.++.++..+|.++...+...
T Consensus 55 g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 55 GLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred cchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 335567778899999988888888999998999999999999996 588899999999888886655432111
Q ss_pred ------------------hHHHHHHHHHHHhhhhhhhhhhhhhheecC---CCcc---hhHHHHHHHHHHHHHHHHHHhh
Q 015963 139 ------------------SFLFMGRLLEGFGVGVISYTVPVYIAEIAP---QNMR---GSLGSVNQLSVTIGIMLAYLLG 194 (397)
Q Consensus 139 ------------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~r---~~~~~~~~~~~~~g~~~~~~i~ 194 (397)
..+..+.-+..+|.|+.-+...++-+|-++ ++++ ...+.++....++|..++..+.
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 255666777788999999999999999998 3222 3567788888888988887766
Q ss_pred hhh----hhHHHHHHhHHHHHHHHhh
Q 015963 195 LFV----NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 195 ~~~----~w~~~f~~~~~~~~~~~~~ 216 (397)
-+. +|.+.|.+..+...+++++
T Consensus 215 vyiq~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 215 VYIQDNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred HhhhhcccceeeccHHHHHHHHHHHH
Confidence 555 8999998887766655544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0051 Score=57.10 Aligned_cols=144 Identities=15% Similarity=0.236 Sum_probs=105.2
Q ss_pred cCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh----------hcchhHHHHHHHHHHH
Q 015963 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF----------SKDSSFLFMGRLLEGF 150 (397)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~----------~~~~~~l~~~r~l~G~ 150 (397)
|.++...+.+..+..++..++..+..+..-+..-|+++..+.++.++..+.-.. .++.+-.+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 378888999998899999999999998888889999998888877766654221 1222333334566666
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---------h---hHHHHHHhHHHHHHHHhhhc
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------N---WRVLAVLGVLPCTLLIPGLF 218 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---------~---w~~~f~~~~~~~~~~~~~~~ 218 (397)
..+..+.....+++|..|+..-|...++.....++|..++..++..+ + -.+..++..+..++.+++..
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 66677777788999999999999999999888888888887777655 1 22444455555555555566
Q ss_pred cccCCh
Q 015963 219 FIPESP 224 (397)
Q Consensus 219 ~~~e~~ 224 (397)
++|+..
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 677653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.048 Score=50.23 Aligned_cols=104 Identities=20% Similarity=0.341 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHHHHHHH---hhhcchhHHHHHHHHHHHHHHHHHhh------------------cchhHHHHHHHHHHH
Q 015963 92 SLANVGAMVGAIASGQIA---EYIGRKGSLMIAAVPNIIGWLIISFS------------------KDSSFLFMGRLLEGF 150 (397)
Q Consensus 92 s~~~~~~~~~~~~~g~l~---dr~Grr~~~~~~~~l~~~~~~~~~~~------------------~~~~~l~~~r~l~G~ 150 (397)
-...+|..++..+.+.++ +++||++.+.++.++..+++++.-.. +++....+.-++.|+
T Consensus 286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence 334445555556666666 46899999999999988888876653 134566777899999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 196 (397)
+-+......+.++.+.. +++|..+.++.-.-..++..++......
T Consensus 366 ~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999 5888888888777777776665444433
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.027 Score=51.68 Aligned_cols=127 Identities=16% Similarity=0.119 Sum_probs=97.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhcch-------hHHHHHHHHHHHHHHHHHhh----------cchhHHHHHHHHHH
Q 015963 87 FSIFGSLANVGAMVGAIASGQIAEYIGRK-------GSLMIAAVPNIIGWLIISFS----------KDSSFLFMGRLLEG 149 (397)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~l~~~~~~~~~~~----------~~~~~l~~~r~l~G 149 (397)
.+|..+...+.-.+.+++..++..|.++| .-+-++..+.+.+.++.... .+.++++...++++
T Consensus 326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s 405 (498)
T COG3104 326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS 405 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 46777777888888888888888885554 23456677777776665543 35788999999999
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhh-------hh---hhHHHHHHhHHHHHHH
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-------FV---NWRVLAVLGVLPCTLL 213 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~-------~~---~w~~~f~~~~~~~~~~ 213 (397)
+|+=...|...+++....|++-.+..++++......|..++..+++ .. .-...|+..+...++.
T Consensus 406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~ 479 (498)
T COG3104 406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVI 479 (498)
T ss_pred HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887776 22 3445555555544433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.047 Score=51.87 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=68.6
Q ss_pred HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH---HHHHHH----Hhhcch-hHHHHHHHH
Q 015963 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI---IGWLII----SFSKDS-SFLFMGRLL 147 (397)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~---~~~~~~----~~~~~~-~~l~~~r~l 147 (397)
+.--+|-+....+.+.+++..|.++|+.+.+++.++.-++... .-..+.. ++..+. ++.... ..++..-++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445687888899999999999999999999887443333221 1111111 111111 111111 122334566
Q ss_pred HHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 148 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
.++..|...|....+..+... ++-+...|-......+|.++|.++.+++
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 788888888887776655332 2234445555666666666666555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.031 Score=51.73 Aligned_cols=128 Identities=9% Similarity=-0.007 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH-Hh----h---cchhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 015963 93 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII-SF----S---KDSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (397)
Q Consensus 93 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~-~~----~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (397)
...+...+..+..-.+..|+..|.=+..++++..+..++. .+ . ..++..++.-++.|++.+.......++.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 3444444444555555566665333344433322222221 11 1 13556666778889998888888887776
Q ss_pred eecCCCcchhHHHHHHHHHHHHHHHHHHhhhh----------hhhH--HHHHHhHHHHHHHHhhhccccCChh
Q 015963 165 EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----------VNWR--VLAVLGVLPCTLLIPGLFFIPESPR 225 (397)
Q Consensus 165 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~----------~~w~--~~f~~~~~~~~~~~~~~~~~~e~~~ 225 (397)
. +|++ .+..+..+.+++.+++.++.-. ..++ ..|.+.+++.++.++....+++.|.
T Consensus 133 ~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 133 V-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred c-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4 5533 3344445555554444333211 1122 2333444455555555556666653
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0014 Score=60.18 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=62.5
Q ss_pred HhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHH-HHHHHHHHHHHHhh
Q 015963 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA-AVPNIIGWLIISFS 135 (397)
Q Consensus 60 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~-~~l~~~~~~~~~~~ 135 (397)
+..+...+...|.++.+-+++|+++++.|.+++.--+..+++.|++|+++||+-+||.++++ +++.....++..+.
T Consensus 21 ~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 21 LFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred eeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 44445667778888899999999999999999999999999999999999999987666655 66666666666654
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.4 Score=41.76 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecC
Q 015963 94 ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAP 168 (397)
Q Consensus 94 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 168 (397)
..+..+.++++.+.+..++|-|.++.++...+...-.. =+=+.+..++.+-...|++.+..+..--+|+++.-.
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 44555667777779999999999998877666543221 122567788889999999999998887777776653
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.062 Score=45.44 Aligned_cols=76 Identities=17% Similarity=0.066 Sum_probs=59.1
Q ss_pred HHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 015963 294 QQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (397)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (397)
......+.+..|.|++-++.|++..+ .......++..+ .++.|.+.|+++++.++.+|.....++...+.......
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~ 90 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR 90 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33445677889999998888998777 333344566555 58889999999999999999999999998887765544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.13 Score=47.58 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=55.9
Q ss_pred hHHHHHhHHHHHhhcCCCchh---HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 015963 299 INGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (397)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (397)
=....+-.|.+.++.|++..+ .....+..+..+..+++|+++||+|.|+++..+.+...+..+++++.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa 112 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG 112 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777788998777 55667778889999999999999999999999988888888877764
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.31 Score=43.99 Aligned_cols=156 Identities=8% Similarity=0.017 Sum_probs=73.3
Q ss_pred cccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH---HHHHHhh-----
Q 015963 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG---WLIISFS----- 135 (397)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~---~~~~~~~----- 135 (397)
...+.+..+.++..+++--++. .......+.+...+..++...+--+...|....++..+.... .+.+.++
T Consensus 32 lpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~~~ 110 (406)
T KOG1479|consen 32 LPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLALVKTD 110 (406)
T ss_pred cchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4455566666777777654433 334444455554444444444444433322222222222221 1222222
Q ss_pred ----cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhh---hhh------hhHHH
Q 015963 136 ----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG---LFV------NWRVL 202 (397)
Q Consensus 136 ----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~---~~~------~w~~~ 202 (397)
..+...++.-.+.+.+.|..........++. |++.-. ....+.+++..+..++. ... +=...
T Consensus 111 ~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytq----avm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~y 185 (406)
T KOG1479|consen 111 TWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQ----AVMSGQALAGTLTSLLRILTKAAFSDSRTSALIY 185 (406)
T ss_pred CccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHH----HHHhcchhHhHHHHHHHHHHHHhcCCCCceeehh
Confidence 2345556667788888888777777776664 433322 22223333322222221 111 12234
Q ss_pred HHHhHHHHHHHHhhhccccCChh
Q 015963 203 AVLGVLPCTLLIPGLFFIPESPR 225 (397)
Q Consensus 203 f~~~~~~~~~~~~~~~~~~e~~~ 225 (397)
|.+..+..++.++....+|+.|-
T Consensus 186 F~~s~~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 186 FITSTVILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhcchH
Confidence 44555555555555556676653
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.066 Score=48.56 Aligned_cols=101 Identities=22% Similarity=0.131 Sum_probs=72.3
Q ss_pred hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHhhhh
Q 015963 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFS----KDSSFLFMGRLLEGFGVGV 154 (397)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~l~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~ 154 (397)
-|.+....|++......+..+++.+.|.+.||... |+.+++......++....... .+.+.+...-.+.|.+..+
T Consensus 296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~ 375 (480)
T KOG2563|consen 296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTG 375 (480)
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcC
Confidence 35566788999999999999999999999999876 666666666666664332222 2334556667788888888
Q ss_pred hhhhhhhhhheecCCCcchhHHHHHH
Q 015963 155 ISYTVPVYIAEIAPQNMRGSLGSVNQ 180 (397)
Q Consensus 155 ~~~~~~~~i~~~~~~~~r~~~~~~~~ 180 (397)
..|...-+-.|..-|..-+...|+.+
T Consensus 376 ~~Pig~ElgvE~TyPv~E~tSsGll~ 401 (480)
T KOG2563|consen 376 YLPIGFELGVETTYPVAEGTSSGLLN 401 (480)
T ss_pred CCCcceeeeeeeccccCCcccceeEE
Confidence 99999888888864444444444433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.16 Score=34.62 Aligned_cols=66 Identities=15% Similarity=-0.023 Sum_probs=54.2
Q ss_pred HHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 015963 301 GVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVA 366 (397)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (397)
.....+|...++.+++..+ +......++.++|.+...++.++.++++.+..+.+...+..+.+++.
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888777 67777889999999999999988888888888988888888877765
|
Note that many members are hypothetical proteins. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.048 Score=49.59 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=66.0
Q ss_pred hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcc-------hhHHHHHHHHHHHH---HHHHH--hhcchhHHHHHHHH
Q 015963 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-------KGSLMIAAVPNIIG---WLIIS--FSKDSSFLFMGRLL 147 (397)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-------r~~~~~~~~l~~~~---~~~~~--~~~~~~~l~~~r~l 147 (397)
.|.+..+.-++..+...+..+|.+++|.++||+-| .+.=.+...+.+.. .+.+. ++.+...+.+.-++
T Consensus 278 ~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~ 357 (493)
T KOG1330|consen 278 IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFL 357 (493)
T ss_pred hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35566677778888999999999999999999433 22211221111111 11111 12222333334455
Q ss_pred HHHhhhh-hhhhhhhhhheecCCCcchhHHHHHHHH-HHHHHHHHHHhh
Q 015963 148 EGFGVGV-ISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLG 194 (397)
Q Consensus 148 ~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~i~ 194 (397)
.|.-... ......-...|..|+++|..+.++.... ...|..-+|.+-
T Consensus 358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~iv 406 (493)
T KOG1330|consen 358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIV 406 (493)
T ss_pred HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCccee
Confidence 5544333 3344455778888999999999886544 444555555333
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.015 Score=56.80 Aligned_cols=82 Identities=17% Similarity=0.070 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 015963 286 IGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (397)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (397)
+...+..+.+.........-.+.+-+++++++.+ .......++.+++.++.+++.||.+||+.+.++.++++++.+++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 3344344444444445555567777778887766 56667888999999999999999999999999999999999998
Q ss_pred HHHH
Q 015963 364 SVAF 367 (397)
Q Consensus 364 ~~~~ 367 (397)
++..
T Consensus 116 alph 119 (633)
T TIGR00805 116 SLPH 119 (633)
T ss_pred hChH
Confidence 8775
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.12 Score=45.66 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=42.4
Q ss_pred hHHHHHhhcCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 015963 305 YSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (397)
Q Consensus 305 ~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (397)
|.-.++++.|++..+ .......+...+...+.|.+.||+|||+..+...++..++++.
T Consensus 56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 333455677887776 3444445666777888899999999999988888887777753
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.19 Score=46.61 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=72.2
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhcch--hHHHHH--HHHHHHHHHHHHhh---------cchhHHHHHHHHHHHhhh
Q 015963 87 FSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIA--AVPNIIGWLIISFS---------KDSSFLFMGRLLEGFGVG 153 (397)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~--~~l~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~g 153 (397)
.-.....|.++-.+|..+..+.. .-++| ++.+.+ =+++.-..++|..- ++-+..++.-++.|+..|
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG 387 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG 387 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence 34566777788888777554321 11222 333221 22233333444322 355667778999999999
Q ss_pred hhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 015963 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (397)
Q Consensus 154 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (397)
........+..+..++++|..+..+...+..+|..+|..++
T Consensus 388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888888888887664
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.047 Score=50.53 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=51.4
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHH
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~ 212 (397)
-++.|++.-.......++-+|...|++++.+.++++.....+..++|++.... |.|+...+.....++
T Consensus 395 i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~ 466 (488)
T KOG2325|consen 395 IVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLV 466 (488)
T ss_pred hheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHH
Confidence 34556666556666788889999999999999999999999999998888555 677666555444333
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.31 Score=36.58 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 324 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 324 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
...++..++.+..+++.||++||+.+..+.....++.+.+..
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 47 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL 47 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999998887777777665543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.68 Score=42.17 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=73.3
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhcchhHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhhh
Q 015963 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSL--MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (397)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~--~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 164 (397)
=|.+-++..+..+++.+..|++..++.+-.-+ ....++.+...++++..+|.|..+++.++.+.......+....-++
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA 366 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIA 366 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999999999999999997777774333 3445555666667788899999999999888888788888877777
Q ss_pred eecCCCcchhHHHHHHH
Q 015963 165 EIAPQNMRGSLGSVNQL 181 (397)
Q Consensus 165 ~~~~~~~r~~~~~~~~~ 181 (397)
.....+.-+..+|+...
T Consensus 367 ~~l~~e~yaLVFGiNtf 383 (412)
T PF01770_consen 367 KNLSEERYALVFGINTF 383 (412)
T ss_pred HhccccceeeeeeeHHH
Confidence 77776666777666543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.017 Score=55.04 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHhhhcccccCcccHH-HHHHhhcCCchhhHHHHhhhHH-HHHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHH
Q 015963 57 LGPIQFGFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWL 130 (397)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~s~~~~-~~~~~~~~~g~l~dr~G--rr~~~~~~~~l~~~~~~ 130 (397)
++.....+...-+....| .++.+|+.++++.+.+..+..+ +.++|.+++|.+..|+. .|+.+.+..+...++.+
T Consensus 312 la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~ 389 (539)
T PF03137_consen 312 LAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVI 389 (539)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence 333333333334444444 6788999999999988876666 66789999999999875 35555555444444433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.022 Score=50.35 Aligned_cols=106 Identities=18% Similarity=0.239 Sum_probs=3.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHH--HHHHHHHHHHHH----------hhcchhHHHHHHHHHHHhhhhh
Q 015963 89 IFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIA--AVPNIIGWLIIS----------FSKDSSFLFMGRLLEGFGVGVI 155 (397)
Q Consensus 89 ~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~--~~l~~~~~~~~~----------~~~~~~~l~~~r~l~G~~~g~~ 155 (397)
.....|.++-.+|..+.++.-=+ -.+|+..+.+ =+++.-..++|. .-+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667888888988887764211 1344443321 222222222331 1234466677789999999999
Q ss_pred hhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 015963 156 SYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (397)
Q Consensus 156 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (397)
......+..+..++++|..+..+.......|..+|..++
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888887777788877776654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.66 Score=41.94 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=70.8
Q ss_pred HHHHhh-hHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---------hhcchhHHHHHHHHHHHhhhhhhh
Q 015963 88 SIFGSL-ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---------FSKDSSFLFMGRLLEGFGVGVISY 157 (397)
Q Consensus 88 ~~~~s~-~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---------~~~~~~~l~~~r~l~G~~~g~~~~ 157 (397)
-.+... |.+...+|.+.+.++-++= ||+.. +..++-.+..-++. .-.+-+.++..-.+.|+..|-...
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~-i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLT-IPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCCC-Cceeh-HHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 444555 8888888877666665543 34333 33222222222222 234667788889999999999999
Q ss_pred hhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhh
Q 015963 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (397)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 194 (397)
....+..+..+++++..+..+.......|...|..++
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999989988777777777777777765554
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.04 Score=48.68 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015963 321 ATFGLGVVQVVATGVNTWL 339 (397)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l 339 (397)
....++++..+|+.+..+.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~ 205 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWP 205 (309)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhcchhccee
Confidence 4557789999999988875
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.52 E-value=2.2 Score=37.12 Aligned_cols=115 Identities=20% Similarity=0.155 Sum_probs=81.3
Q ss_pred HhhcCCc-hhhHHHHhhhHHHHHHHHHHHHHHHhhhcc-hhH-----HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 015963 78 SDLKLTI-SEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGS-----LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (397)
Q Consensus 78 ~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~-----~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~ 150 (397)
+.+..+. .|+-|....|.+|-.+.. -+-|+=+ +.. +-.-.+++.+...+..+.++++...+.-+..|+
T Consensus 280 ~g~sls~~sqYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGL 354 (409)
T KOG3880|consen 280 HGFSLSKDSQYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGL 354 (409)
T ss_pred cCCccchhhcchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 3444443 357888888888765432 2222222 111 122344455555666778999998899999999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~ 197 (397)
-.|..+.-..--+.+-.++++|-.+++....+-.+|..++.+++-.+
T Consensus 355 lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 355 LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 88888888877788878889999999999999999999988877544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=87.50 E-value=5.3 Score=39.37 Aligned_cols=55 Identities=18% Similarity=0.127 Sum_probs=38.8
Q ss_pred hcCCCchh--HHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHH
Q 015963 312 NAGISSSN--VATFGLGVVQVVATGVNTWLMDK-AGRRLLLLISSSGMAASFFLVSVA 366 (397)
Q Consensus 312 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~ 366 (397)
..+.+... .....+....-+..+++|++.|+ +|+++.+..+.++..++..++++.
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34666554 23333333444667788999997 599999999999999988877764
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=86.70 E-value=13 Score=28.92 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 015963 320 VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFL 362 (397)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 362 (397)
....+......+..++.+.+.+++|.|+.++++.+...+-...
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~ 83 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS 83 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5556666777788889999999999999999887776544433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.48 E-value=21 Score=30.64 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=83.7
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhcch--hHHHHHHHHHHHHHHHHHhh----c---chhHHHHHHHHHHHhhhhhhh
Q 015963 87 FSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIAAVPNIIGWLIISFS----K---DSSFLFMGRLLEGFGVGVISY 157 (397)
Q Consensus 87 ~~~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~l~~~~~~~~~~~----~---~~~~l~~~r~l~G~~~g~~~~ 157 (397)
-|.+.+.+++...+|+-+..++..|-..| ..+.+..+...+...+.... + +...=+++..+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 48889999999999999999988876554 34444444444443333322 2 222334455555667788999
Q ss_pred hhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHhHHHHHHHHh
Q 015963 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL----GLFVNWRVLAVLGVLPCTLLIP 215 (397)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i----~~~~~w~~~f~~~~~~~~~~~~ 215 (397)
....+-+++.|++.|...+.++-....+=..++-.. +...+-|..|-++.+...++.+
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence 999999999999999988887765554433333211 0112567888887776655533
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.56 E-value=22 Score=30.25 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=50.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHH----HHHHHHHHHHHHHH-hh----cchhHHHHHHHHHHHhhhhhhh
Q 015963 88 SIFGSLANVGAMVGAIASGQIAEY-IGRKGSLM----IAAVPNIIGWLIIS-FS----KDSSFLFMGRLLEGFGVGVISY 157 (397)
Q Consensus 88 ~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~----~~~~l~~~~~~~~~-~~----~~~~~l~~~r~l~G~~~g~~~~ 157 (397)
....-++..|..+|....|.+... +.||+.+. .+.++..+..+..+ .. .++..+++.-++.|+..=+..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 444555666666776777877764 44554433 23444444444421 11 1355677788888876544444
Q ss_pred hhhhhhheecCCCcchhHHHHHHHHHHHHHH
Q 015963 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM 188 (397)
Q Consensus 158 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ 188 (397)
+....-.|+ +..++.+..-.++..+++|.+
T Consensus 224 ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~ 253 (267)
T PF07672_consen 224 VILNLPHEY-KGYNPKKIGIQFGLIWGFGYI 253 (267)
T ss_pred HHhcChhhh-cCCCcceehhHHHHHHHHHHH
Confidence 443333333 222222333334445555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 397 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-24 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.98 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.94 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.86 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.56 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.45 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.42 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.39 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.37 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.03 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.93 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=286.38 Aligned_cols=324 Identities=29% Similarity=0.431 Sum_probs=259.7
Q ss_pred cchhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcC--------CchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchh
Q 015963 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKL--------TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG 116 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~ 116 (397)
+++.+.+.++.+++.+..|+|.++++..+|.++++++. +..+.|++.+++.+|..+|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 34566777778889999999999999999999998843 2346789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH------------------hhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHH
Q 015963 117 SLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178 (397)
Q Consensus 117 ~~~~~~~l~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~ 178 (397)
+++++.+++.+++++++ .++|+++++++|+++|++.|...+....+++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 99999999999999999 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhh------------hhHHHHHHhHHHHHHHHhhhccccCChhHHHhcCCHHHHHHHHHHHhCC
Q 015963 179 NQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF 246 (397)
Q Consensus 179 ~~~~~~~g~~~~~~i~~~~------------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 246 (397)
.+.+..+|..+++.++... +||+.+.+..++.++.++..+++||+|+|+..+++.|++.+.+++..+.
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 9999999999988877443 5888888888888888888889999999999999999999888776543
Q ss_pred CchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhhcCCCchh--HHHHH
Q 015963 247 DTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFG 324 (397)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~ 324 (397)
+...++..+..+.. ++ .++...... ....++..+......+.++.+.+.+.+|.+.+.++.+.+... .....
T Consensus 247 ~~~~~~~~~~~~~~-~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4gc0_A 247 TLATQAVQEIKHSL-DH--GRKTGGRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII 320 (491)
T ss_dssp HHHHHHHHHHHHHH-HH--HHHHTTHHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH-Hh--hhhhhhHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHH
Confidence 32221111111111 11 111111111 122334556666677777788888899999998887776554 45567
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 015963 325 LGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEVGHA 374 (397)
Q Consensus 325 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (397)
.++..+++.++++++.||+|||+.++.+...+.++++.++..........
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 78888999999999999999999999999998888888777665544433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=245.19 Aligned_cols=281 Identities=12% Similarity=0.122 Sum_probs=221.6
Q ss_pred hHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 015963 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (397)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~ 128 (397)
+.....+++..+..+++.....+..|.+.+++|.+.++.+++.+++.+++.+++++.|+++||+|||++++.+.++.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44445556666777888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH---HhhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh-------
Q 015963 129 WLII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN------- 198 (397)
Q Consensus 129 ~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~~------- 198 (397)
.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 184 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ 184 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999 888999999999999999999999999999999999999999999999999999999999987762
Q ss_pred -----------------------hHHHHHHhHHHHHHHHhhhc--cccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHH
Q 015963 199 -----------------------WRVLAVLGVLPCTLLIPGLF--FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 253 (397)
Q Consensus 199 -----------------------w~~~f~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (397)
||+.|++.++..++..+..+ ..||+++...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~------------------------- 239 (438)
T 3o7q_A 185 SQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH------------------------- 239 (438)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC-------------------------
T ss_pred cccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc-------------------------
Confidence 99999877766555544333 2455532100
Q ss_pred HHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHH-Hhhc-CCCchh--HHHHHHHHHH
Q 015963 254 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANA-GISSSN--VATFGLGVVQ 329 (397)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~--~~~~~~~~~~ 329 (397)
.++++++.+..++++++++..+...+...+.. ........+.+.+ +++. |.+... .......++.
T Consensus 240 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 308 (438)
T 3o7q_A 240 -------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYV----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCF 308 (438)
T ss_dssp -------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred -------ccccccchhhhHHHHHhChHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHH
Confidence 00111223345566666665554444333322 2345566777777 7665 777665 5666778889
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 330 VVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 330 ~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
+++.++.++++||++||+.+..+..+..++++++..
T Consensus 309 ~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 344 (438)
T 3o7q_A 309 FIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF 344 (438)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888777776655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-31 Score=245.57 Aligned_cols=296 Identities=13% Similarity=0.092 Sum_probs=222.4
Q ss_pred hhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 015963 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~ 126 (397)
.++......+++.+..+++...+.+.+|.+.+++ .+.++.+++.+++.++..+++++.|+++||+|||++++.+.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 4456666777777888888889999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h
Q 015963 127 IGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N 198 (397)
Q Consensus 127 ~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~ 198 (397)
++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999998764 7
Q ss_pred -hHHHHHHhHHHHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHH
Q 015963 199 -WRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (397)
Q Consensus 199 -w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 276 (397)
||+.|++.+++.++..+ .++++||+|+....+.+.++ ..+.+.+ .++..+++....+...++++
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 249 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDD---YNEKAEQELTAKQIFMQYVL 249 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccccc---chhhhhcccccccchHHHHH
Confidence 99999998887766544 45667887764221111000 0000000 00000001111111133444
Q ss_pred hccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHH
Q 015963 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLLI 351 (397)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~--~~~~~~~~ 351 (397)
+++. ++...+..+........+..+.|.++++ .|.++.. .......++.+++.++.+++.||+ +||+.+..
T Consensus 250 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 250 PNKL----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp SCHH----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred cCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 4433 2333333333444456677888888877 6787665 666677889999999999999999 99988877
Q ss_pred HHHHHH-HHHH
Q 015963 352 SSSGMA-ASFF 361 (397)
Q Consensus 352 ~~~~~~-~~~~ 361 (397)
+..+.. ++++
T Consensus 326 ~~~~~~~~~~~ 336 (451)
T 1pw4_A 326 FFMTLVTIATI 336 (451)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 665555 4443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=223.32 Aligned_cols=253 Identities=15% Similarity=0.147 Sum_probs=200.0
Q ss_pred HHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 015963 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (397)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~ 133 (397)
.+++..+..+++.+.+.+..|.+.+++|.+.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 44555666777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHH
Q 015963 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (397)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~ 209 (397)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998776 899999988887
Q ss_pred HHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHH
Q 015963 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (397)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 288 (397)
.++..+ ..+++||+++... ++++.+.+++++++++..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDA-----------------------------------PRTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTC-----------------------------------CCCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCCc-----------------------------------ccccHHHHHHHHhcCcchHHHHHHH
Confidence 776655 5566788754210 0011222334455554444333332
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhch
Q 015963 289 GLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGR 345 (397)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~ 345 (397)
.+ ..........+.|.++++ .|.++.. .......++.+++.++.+++.||.++
T Consensus 209 ~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 209 IG----GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp HH----HHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222334455555555554 4665444 55566678888889999999998887
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=203.90 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=131.2
Q ss_pred HHHHHHh-----hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 015963 73 QAEIISD-----LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRL 146 (397)
Q Consensus 73 ~~~i~~~-----~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~ 146 (397)
.+.+.++ +|.+.++.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++++++|++.++++|+
T Consensus 37 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (491)
T 4aps_A 37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSII 116 (491)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHH
T ss_pred HHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445555 99999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhheecCCCc--chhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhh
Q 015963 147 LEGFGVGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (397)
Q Consensus 147 l~G~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~ 217 (397)
++|++.+...+...+++.|++|+++ |+.++++++.+..+|..++|.+++.+ +||+.|++.++..++.++..
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 77788889999999999999988776 89999999877666555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-22 Score=185.12 Aligned_cols=267 Identities=13% Similarity=0.049 Sum_probs=156.3
Q ss_pred ccCcccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH---HHHhhcch-hHH
Q 015963 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL---IISFSKDS-SFL 141 (397)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~---~~~~~~~~-~~l 141 (397)
+...+.+|. +++++|.+..+.|++.+++.+++.++++++|+++||+|||++++.+..+.+++.. ...+++.. ..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665 5567999999999999999999999999999999999999999988877765322 11222211 123
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhheecCC--CcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHHHHHhh
Q 015963 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG 216 (397)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~~~~~~~~~ 216 (397)
...+.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+ +||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 3455666655555444444444444432 3456566666666677777888777665 7999999877765555544
Q ss_pred hccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHHHHHh
Q 015963 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (397)
Q Consensus 217 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 296 (397)
.++.+|+++...++. + + + .+++++.....++++++++..+...+......
T Consensus 184 ~~~~~~~~~~~~~~~---~-----------~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 233 (417)
T 2cfq_A 184 LFFAKTDAPSSATVA---N-----------A-V-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVS---- 233 (417)
T ss_dssp SCSSCCCCSCSSCSS---S-----------S-S-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHcCcccccccccc---c-----------c-c-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHH----
Confidence 444444331000000 0 0 0 00001111123445555544433332211111
Q ss_pred hhhHHHHHhHHHHHhhc-CC---Cchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Q 015963 297 SGINGVLFYSSNIFANA-GI---SSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLV 363 (397)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-g~---~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~ 363 (397)
..+.....+.|.++.+. +. +... .......++.+++.++.++++||++||+.+..+..+.+++.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 234 CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 11222333345554432 21 1111 33445566778899999999999999998887777666654433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=177.10 Aligned_cols=146 Identities=13% Similarity=0.122 Sum_probs=131.9
Q ss_pred HHHHHHhhc------CCchhhHHHHhhhHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHHHHHHhhc-chhHHHHH
Q 015963 73 QAEIISDLK------LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMG 144 (397)
Q Consensus 73 ~~~i~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~l~~~~~~~~~~~~-~~~~l~~~ 144 (397)
.+.+.+++| .+..+.+++.+++.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++.
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTG 115 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 345678899 9999999999999999999999999999999 999999999999999999999999 99999999
Q ss_pred HHHHHHhhhhhhhhhhhhhheecCCCcchhHHHH---HHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhh
Q 015963 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (397)
Q Consensus 145 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~ 217 (397)
|++.|++.+...+...+++.|++|+++|+++.+. .+.+..+|..++|.+++.+ +||+.|++.++..++..+..
T Consensus 116 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876666 8889999999999988766 89999998887766655543
Q ss_pred c
Q 015963 218 F 218 (397)
Q Consensus 218 ~ 218 (397)
+
T Consensus 196 ~ 196 (524)
T 2xut_A 196 W 196 (524)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=131.07 Aligned_cols=152 Identities=13% Similarity=0.154 Sum_probs=128.2
Q ss_pred CcccHHHHHHh-hcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHH-HHHHHHHhh--cchhHHH
Q 015963 69 SSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMIAAVPNI-IGWLIISFS--KDSSFLF 142 (397)
Q Consensus 69 ~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~l~~-~~~~~~~~~--~~~~~l~ 142 (397)
.....|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. ++.+.+.
T Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 34556666555 899999999999999999999999999999999 99999888877776 666666665 3677788
Q ss_pred HHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhh
Q 015963 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (397)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~ 217 (397)
+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.++..++..+..
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8889999999888888899999999999999999999999999 999999888776 79999998887777666554
Q ss_pred ccc
Q 015963 218 FFI 220 (397)
Q Consensus 218 ~~~ 220 (397)
+++
T Consensus 431 ~~~ 433 (451)
T 1pw4_A 431 IVV 433 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.6e-13 Score=124.16 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=117.0
Q ss_pred chhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhhhhh
Q 015963 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYI 163 (397)
Q Consensus 84 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 163 (397)
....++..++..++..++.++.|+++||+|||+.+..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888889999999999999999999999999988888887888888888888888888888777777778899
Q ss_pred heecCCCcchhHHHH-HHHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhh-hccccCChh
Q 015963 164 AEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESPR 225 (397)
Q Consensus 164 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~-~~~~~e~~~ 225 (397)
.|.+|++.|+.+.++ ++....+|..++|.+++.+ +++..|.+.++..++..+. +...||+++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999888 4777788888888888765 7788888877776666554 444666543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=119.45 Aligned_cols=146 Identities=13% Similarity=-0.042 Sum_probs=117.7
Q ss_pred ccHHHH-H-HhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 015963 71 PTQAEI-I-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (397)
Q Consensus 71 ~~~~~i-~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~ 148 (397)
...|.+ . +.+|.+..+.++..+.+.++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.++.. ++.
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 357 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLC 357 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHH
Confidence 344444 4 4569999999999999999999999999999999999999999999999999998888887665544 888
Q ss_pred HHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----h-hHHHHHHhHHHHHHHHhhhcc
Q 015963 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPGLFF 219 (397)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~-w~~~f~~~~~~~~~~~~~~~~ 219 (397)
|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ + ++..|++.++..++..+..+.
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865 888877766 4558888888887766 6 888888766554444443333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-13 Score=125.34 Aligned_cols=156 Identities=13% Similarity=0.045 Sum_probs=112.0
Q ss_pred CcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh---c-chhHHHHH
Q 015963 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---K-DSSFLFMG 144 (397)
Q Consensus 69 ~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~---~-~~~~l~~~ 144 (397)
.....|.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. . +.+..++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 375 (491)
T 4gc0_A 296 VLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 375 (491)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 3445567788888888788888888889999999999999999999999999988888877766543 1 11222222
Q ss_pred HHHHHHh-hhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----------hhHHHHHHhHHHHHHH
Q 015963 145 RLLEGFG-VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLL 213 (397)
Q Consensus 145 r~l~G~~-~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----------~w~~~f~~~~~~~~~~ 213 (397)
-.+...+ .....+....+.+|.+|.+.|+.++++......+|..+++.+...+ ++.+.|++.++++++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 376 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 2222222 2234466778999999999999999999888888887776554332 3456677777666666
Q ss_pred Hh-hhccccCCh
Q 015963 214 IP-GLFFIPESP 224 (397)
Q Consensus 214 ~~-~~~~~~e~~ 224 (397)
.+ .++++||+.
T Consensus 456 ~i~~~~~~PETk 467 (491)
T 4gc0_A 456 ALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHCCCCT
T ss_pred HHHHHheecCCC
Confidence 44 567789984
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=120.02 Aligned_cols=153 Identities=16% Similarity=0.048 Sum_probs=119.1
Q ss_pred cccHHHH-HHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHH-----HHHHHHHHHHHHHHhhc-------
Q 015963 70 SPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-----IAAVPNIIGWLIISFSK------- 136 (397)
Q Consensus 70 ~~~~~~i-~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~l~~~~~~~~~~~~------- 136 (397)
....|.+ .+.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++.....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444444 4446777678888899999999999999999999999987665 77777777777666643
Q ss_pred --chhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhHHHHH
Q 015963 137 --DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCT 211 (397)
Q Consensus 137 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~~~~~ 211 (397)
+.+.+.+.-++.|++.+...+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+ ++.+.|.+.++..+
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSV 462 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6777888899999999999999999999999999999999999999999999999998877 56677777766665
Q ss_pred HHHhh-hccccC
Q 015963 212 LLIPG-LFFIPE 222 (397)
Q Consensus 212 ~~~~~-~~~~~e 222 (397)
+..+. +++.++
T Consensus 463 ~~~~~~~~~~~~ 474 (491)
T 4aps_A 463 VLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHH
Confidence 55443 333343
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.6e-11 Score=106.09 Aligned_cols=128 Identities=19% Similarity=0.119 Sum_probs=100.4
Q ss_pred HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHH-HHHHHH--HHHh--hcchhHHHHHHHHHHH
Q 015963 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWL--IISF--SKDSSFLFMGRLLEGF 150 (397)
Q Consensus 76 i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l-~~~~~~--~~~~--~~~~~~l~~~r~l~G~ 150 (397)
+++++|.++.+.+++.+...++..++.++.+++.||+|+|. ..+..+ ...+.. .... .++.+.+.+..++.|+
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 303 (375)
T 2gfp_A 226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFF 303 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 34558889999999999999999999999999999999833 233222 222222 2222 2467777788899999
Q ss_pred hhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHh
Q 015963 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (397)
Q Consensus 151 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~----~w~~~f~~~ 206 (397)
+.+...+...+++.|..| ++|+++.++.+....+|..++|.+.+.+ +|+..+++.
T Consensus 304 ~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 304 GAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999999999998 8999999999999999999998888776 466555553
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-09 Score=99.06 Aligned_cols=149 Identities=17% Similarity=0.119 Sum_probs=105.6
Q ss_pred cccHHHHHHhhcCCc-hhhHHHHhhhHHHHHHHHHHHHHHH----hhhcc----hhHHHHHHHHHHHHHHHHHhh-----
Q 015963 70 SPTQAEIISDLKLTI-SEFSIFGSLANVGAMVGAIASGQIA----EYIGR----KGSLMIAAVPNIIGWLIISFS----- 135 (397)
Q Consensus 70 ~~~~~~i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~l~~~~~~~~~~~----- 135 (397)
.+..+....+.+.+. ...+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 398 (524)
T 2xut_A 319 ASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMD 398 (524)
T ss_dssp TTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT
T ss_pred chhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444443322 2467777777788888887777764 55543 356777888888887777664
Q ss_pred ----cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh------hh------
Q 015963 136 ----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NW------ 199 (397)
Q Consensus 136 ----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~------~w------ 199 (397)
.+.+.+++..++.|++.+...+...+++.|..|+++|++++++.+....+|..+++.+.+.+ +|
T Consensus 399 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~ 478 (524)
T 2xut_A 399 GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM 478 (524)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 36677888899999999999999999999999999999999999999999999999988766 24
Q ss_pred ---HHHHHHhHHHHHHHHhhhc
Q 015963 200 ---RVLAVLGVLPCTLLIPGLF 218 (397)
Q Consensus 200 ---~~~f~~~~~~~~~~~~~~~ 218 (397)
+..|++.+...++..+..+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~ 500 (524)
T 2xut_A 479 SVTAFQMFFFAGFAILAAIVFA 500 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHHH
Confidence 3336666655555544433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 397 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 50.1 bits (118), Expect = 3e-07
Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 13/302 (4%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLI 131
+ + + + S ++ G +++ + L++AA + +
Sbjct: 50 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 109
Query: 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191
+ + +F+ L G+ G+ + Q RG + SV + +G +
Sbjct: 110 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169
Query: 192 LLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDIS 251
LL L + + L M D S + +
Sbjct: 170 LLFLL-------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 222
Query: 252 IEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA 311
+ +++ + + L K W+ + + + +L+ GI
Sbjct: 223 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY--GILDWSPTYLKEVK 280
Query: 312 NAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEV 371
+ + S+ A F + T + W+ DK R M V +
Sbjct: 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA 340
Query: 372 GH 373
G+
Sbjct: 341 GN 342
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.57 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.43 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=8.2e-31 Score=240.64 Aligned_cols=290 Identities=13% Similarity=0.069 Sum_probs=207.8
Q ss_pred chhhHHHHHHHHHHHhhhcccccCcccHHHHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Q 015963 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (397)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~ 125 (397)
+.+|.+...++++.+..+++...++.+.|.++ |+|+|.+|+|++.+++.+++.+++++.|+++||+|||+++..+.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 45677777778888888888888888888775 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----cchhHHHHHHHHHHHhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHHHHHHHHHhhhhh----
Q 015963 126 IIGWLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (397)
Q Consensus 126 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~~---- 197 (397)
+++.++++++ ++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++.++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 9999998876 47889999999999999999999999999999999999999999999999999988877554
Q ss_pred -hhHHHHHHhHHHHHHHHh-hhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHH
Q 015963 198 -NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAEL 275 (397)
Q Consensus 198 -~w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 275 (397)
+||+.|++.+++.++..+ .+.+++|+|+........++ .+.+.++..+..+++...++...+..
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------KNDYPDDYNEKAEQELTAKQIFMQYV 245 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------CCC-------------CCTHHHHHHT
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh--------------hhhcccchhhccccccchhhHHHHHH
Confidence 799999888777665544 44556666543211110000 00000001111111111222223333
Q ss_pred HhccchhhHHHHHHHHHHHHhhhhHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 015963 276 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLIS 352 (397)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~ 352 (397)
++++ ..+......+......+....+.+.++.+ .+.+... .......+..+++.++.+++.||++|++.....
T Consensus 246 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (447)
T d1pw4a_ 246 LPNK----LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 321 (447)
T ss_dssp SSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HcCc----hHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence 3333 23333333333444455666777777765 4665554 566677888999999999999999886654444
Q ss_pred HH
Q 015963 353 SS 354 (397)
Q Consensus 353 ~~ 354 (397)
..
T Consensus 322 ~~ 323 (447)
T d1pw4a_ 322 VF 323 (447)
T ss_dssp HH
T ss_pred ch
Confidence 33
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=2.3e-21 Score=174.60 Aligned_cols=271 Identities=13% Similarity=0.039 Sum_probs=163.3
Q ss_pred cccccCcccHHH-HHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHH-
Q 015963 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL- 141 (397)
Q Consensus 64 ~~~~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l- 141 (397)
+..+...|.+|. +++++|.|.+++|++.+++.+++.+++++.|+++||+||||+++++..+..++..+.....+....
T Consensus 21 ~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T d1pv7a_ 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ 100 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 344455677775 677899999999999999999999999999999999999999999999999999888887665544
Q ss_pred ---HHHHHHHHHhhhhhhhhhhhhhheecCC--CcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHhH-HHHHH
Q 015963 142 ---FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGV-LPCTL 212 (397)
Q Consensus 142 ---~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~i~~~~---~w~~~f~~~~-~~~~~ 212 (397)
++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++.+ +|+..+.... ...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 180 (417)
T d1pv7a_ 101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL 180 (417)
T ss_dssp TTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHH
Confidence 3445555555544444444444333332 2334455666677777777777777665 4555555444 44444
Q ss_pred HHhhhccccCChhHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHhhhcchhhhhHHHHHhccchhhHHHHHHHHH
Q 015963 213 LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (397)
Q Consensus 213 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 292 (397)
..+..+..+|+++...++ +++.+.++........+..+.+..+..........
T Consensus 181 ~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (417)
T d1pv7a_ 181 AVLLFFAKTDAPSSATVA---------------------------NAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVS 233 (417)
T ss_dssp HHHHHSSCCCSCSSSCSS---------------------------HHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchhhh---------------------------hhhhhhcccccccccccccccccccchhhhhHHHH
Confidence 455566666665311100 00011111112222223333333333222222222
Q ss_pred HHHhhhhHHHHHhHHHHHhhcCCC----chh--HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Q 015963 293 LQQLSGINGVLFYSSNIFANAGIS----SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSV 365 (397)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (397)
... .........+....... ... .......++..++..+.+++.||.++|+.+..+..+..++.+.+..
T Consensus 234 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 308 (417)
T d1pv7a_ 234 CTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHH----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc
Confidence 221 11222222222221111 111 3445556777888999999999999999999888887777665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.9e-15 Score=134.09 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=122.1
Q ss_pred cCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhhhhhhhhh
Q 015963 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (397)
Q Consensus 81 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 160 (397)
+.+....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34556678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhheecCCCcchhHHHHH-HHHHHHHHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhh-hccccC
Q 015963 161 VYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPE 222 (397)
Q Consensus 161 ~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~-~~~~~e 222 (397)
+++.|.+|+++|+++.++. +....+|..++|.+.+++ ||+..|++.+++.++..++ .+.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999975 556778888888887665 8999998887776665443 344443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=7.5e-13 Score=119.77 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=110.0
Q ss_pred HHHHhhcCCchhhHHHHhhhHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH---h--hcchhHHHHHHHHHH
Q 015963 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F--SKDSSFLFMGRLLEG 149 (397)
Q Consensus 75 ~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~l~~~~~~~~~---~--~~~~~~l~~~r~l~G 149 (397)
.+.+.++.+..+.++..+...++..++.++.|++.||++||+......+...+..+... . ..+.+...+.-++.|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999987655444333333222222 1 346677778888899
Q ss_pred HhhhhhhhhhhhhhheecCCCcchhHHHHHHHHHHH-HHHHHHHhhhhh----hhHHHHHHhHHHHHHHHhhhc
Q 015963 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (397)
Q Consensus 150 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~i~~~~----~w~~~f~~~~~~~~~~~~~~~ 218 (397)
++.+...+....+..|.+|++.|+++.|+.+....+ |.+++|.+.+.+ ||+..|++.+...++..++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 998888888999999999999999999998776655 566777777655 899888887766665554433
|