Citrus Sinensis ID: 016048

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
Protein Sequence
MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFSSA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHccccccccccccccccHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mekksgvsHLFITIFVHCfstsmvapaitdvtmsavcpgrdecSLAIYLSGFQQAIIGLGTLVMMplvgnlsdkygrkalltvpitlsiiPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLslayvadnvppgrrasVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIflpesvrdedlytpilsskaEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTIsqlimmpvlaptvGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQvasneqgkaqGCISGICSFanlvsplafspltgdcrfssa
Flexible Loop (DISEMBL)
MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLafspltgdcrfssa
Low Complexity Region (SEG)
MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFSSA
Disordered region (IsUnstruct)
******VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSS*************KLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD******
Disordered Region (DISOPRED)
****SGV*HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYT********************QVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSK*******GKAQGCISGICSFANLVSPLAFSPLTGDCRFS**
Disordered Region (DISEMBL)
MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFSSA
Disordered Region (DISPRO)
**KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFS**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFSSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	396	2.2.26 [Sep-21-2011]
Q96MC6	490	Hippocampus abundant tran	yes	no	0.863	0.697	0.242	6e-21
P70187	490	Hippocampus abundant tran	yes	no	0.863	0.697	0.242	6e-21
A4IF94	502	Hippocampus abundant tran	no	no	0.858	0.677	0.237	2e-18
Q5SR56	506	Hippocampus abundant tran	no	no	0.853	0.667	0.226	8e-18
Q8CIA9	507	Hippocampus abundant tran	no	no	0.777	0.607	0.230	5e-17
B2RYH9	507	Hippocampus abundant tran	no	no	0.772	0.603	0.228	4e-16
P02982	399	Tetracycline resistance p	yes	no	0.732	0.726	0.233	2e-12
P51563	393	Tetracycline resistance p	yes	no	0.737	0.743	0.238	4e-10
P02981	396	Tetracycline resistance p	yes	no	0.727	0.727	0.217	7e-09
Q07282	405	Tetracycline resistance p	yes	no	0.760	0.743	0.206	2e-07

>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2

 Score =  102 bits (253), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 167/383 (43%), Gaps = 41/383 (10%)

Query: 7   VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMP 66
           V H  I IF+  F+  ++  A T V +    P          ++G  Q + GL + +  P
Sbjct: 37  VYHAVIVIFLEFFAWGLLT-APTLVVLHETFPKH-----TFLMNGLIQGVKGLLSFLSAP 90

Query: 67  LVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLS 126
           L+G LSD +GRK+ L + +  +  P+ ++  S      + Y+ + +++ +        + 
Sbjct: 91  LIGALSDVWGRKSFLLLTVFFTCAPIPLMKISP-----WWYFAVISVSGVFA--VTFSVV 143

Query: 127 LAYVADNVPPGRRASVFGIFSGIVSGAFVC----GTISARFISTSAAFQAATAGSIISAV 182
            AYVAD      R+  +G+ S   + + V     G    R    S     ATA +++   
Sbjct: 144 FAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDIC 203

Query: 183 YMRIFLPESV----RDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS 238
           ++ + +PES+    R      PI   +A+  AS ++  +           D +V L+   
Sbjct: 204 FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQ-----------DSIVLLI--- 249

Query: 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPV 298
                  I  FLS L +AG   S   YL+    F+    A  + + GI   I+Q I++ +
Sbjct: 250 ------CITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 299 LAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVA 358
           L  ++G    +  GL F  + +  Y      W+ +AA   + +S  + P +  +VS+   
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTAD 363

Query: 359 SNEQGKAQGCISGICSFANLVSP 381
           +++QG  QG I+GI    N + P
Sbjct: 364 ADQQGVVQGMITGIRGLCNGLGP 386

Homo sapiens (taxid: 9606)

>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3

 Score =  102 bits (253), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 167/383 (43%), Gaps = 41/383 (10%)

Query: 7   VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMP 66
           V H  I IF+  F+  ++  A T V +    P          ++G  Q + GL + +  P
Sbjct: 37  VYHAVIVIFLEFFAWGLLT-APTLVVLHETFPKH-----TFLMNGLIQGVKGLLSFLSAP 90

Query: 67  LVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLS 126
           L+G LSD +GRK+ L + +  +  P+ ++  S      + Y+ + +++ +        + 
Sbjct: 91  LIGALSDVWGRKSFLLLTVFFTCAPIPLMKISP-----WWYFAVISVSGVFA--VTFSVV 143

Query: 127 LAYVADNVPPGRRASVFGIFSGIVSGAFVC----GTISARFISTSAAFQAATAGSIISAV 182
            AYVAD      R+  +G+ S   + + V     G    R    S     ATA +++   
Sbjct: 144 FAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDIC 203

Query: 183 YMRIFLPESV----RDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS 238
           ++ + +PES+    R      PI   +A+  AS ++  +           D +V L+   
Sbjct: 204 FILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQ-----------DSIVLLI--- 249

Query: 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPV 298
                  I  FLS L +AG   S   YL+    F+    A  + + GI   I+Q I++ +
Sbjct: 250 ------CITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 299 LAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVA 358
           L  ++G    +  GL F  + +  Y      W+ +AA   + +S  + P +  +VS+   
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTAD 363

Query: 359 SNEQGKAQGCISGICSFANLVSP 381
           +++QG  QG I+GI    N + P
Sbjct: 364 ADQQGVVQGMITGIRGLCNGLGP 386

Mus musculus (taxid: 10090)

>sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 171/391 (43%), Gaps = 51/391 (13%)

Query: 4   KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLV 63
           +  V H  I IF+  F+  ++  ++  V +    P          ++G  Q + GL + +
Sbjct: 39  RPSVYHAAIVIFLEFFAWGLLTTSMLTV-LHETFPQH-----TFLMNGLIQGVKGLLSFL 92

Query: 64  MMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIH 123
             PL+G LSD +GRK  L   +  +  P+ ++  S      + Y+ + +++ +       
Sbjct: 93  SAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISP-----WWYFAMISISGVFS--VTF 145

Query: 124 CLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSA--AFQAATAGS---- 177
            +  AYVAD      R++ +G         +V  T +A  +S+ A  A+ +A+ G     
Sbjct: 146 SVIFAYVADVTQEHERSTAYG---------WVSATFAASLVSSPAIGAYLSASYGDSLVV 196

Query: 178 -------IISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDD 230
                  ++   ++ + +PES+ ++    P LS  A IS    +    L+   +    D 
Sbjct: 197 LVATVVALLDICFILLAVPESLPEK--MRP-LSWGARISWKQADPFASLKKVGK----DS 249

Query: 231 MVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTI 290
            + L+          I  FLS L +AG   S   YL+    F   + A  + + GI   +
Sbjct: 250 TILLI---------CITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAMVGILSIV 300

Query: 291 SQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLR 350
           +Q + +  L  ++G    +  GL F    +  Y     +W+ +AA + + +S  + P + 
Sbjct: 301 AQTVFLTSLMRSLGNKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGIVAAVSSITFPAVS 360

Query: 351 TIVSKQVASNEQGKAQGCISGICSFANLVSP 381
           T+VS+   SN+QG AQG I+GI    N + P
Sbjct: 361 TLVSQNADSNQQGVAQGIITGIRGLCNGLGP 391

Bos taurus (taxid: 9913)

>sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 166/393 (42%), Gaps = 55/393 (13%)

Query: 4   KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLV 63
           +  V H  I IF+  F+  ++   +  V                 ++G  Q + GL + +
Sbjct: 42  RPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFS------QHTFLMNGLIQGVKGLLSFL 95

Query: 64  MMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIH 123
             PL+G LSD +GRK  L   +  +  P+ ++  S      + Y+ + +++ +       
Sbjct: 96  SAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISP-----WWYFAMISVSGVFS--VTF 148

Query: 124 CLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSA--AFQAATAGS---- 177
            +  AYVAD      R++ +G         +V  T +A  +S+ A  A+ +A+ G     
Sbjct: 149 SVIFAYVADVTQEHERSTAYG---------WVSATFAASLVSSPAIGAYLSASYGDSLVV 199

Query: 178 -------IISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSI-- 228
                  ++   ++ + +PES+ ++            +S   + S K+   F  L  +  
Sbjct: 200 LVATVVALLDICFILVAVPESLPEK---------MRPVSWGAQISWKQADPFASLKKVGK 250

Query: 229 DDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAG 288
           D  V L+          I  FLS L +AG   S   YL+    F   + A  + + GI  
Sbjct: 251 DSTVLLI---------CITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMVGILS 301

Query: 289 TISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPC 348
            ++Q   + +L  ++G    +  GL F  + +  Y     +W+ +AA   + +S  + P 
Sbjct: 302 IVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPA 361

Query: 349 LRTIVSKQVASNEQGKAQGCISGICSFANLVSP 381
           +  +VS+   S++QG AQG I+GI    N + P
Sbjct: 362 ISALVSRNAESDQQGVAQGIITGIRGLCNGLGP 394

Homo sapiens (taxid: 9606)

>sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 147/339 (43%), Gaps = 31/339 (9%)

Query: 49  LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYY 108
           ++G  Q + GL + +  PL+G LSD +GRK  L   +  +  P+ ++  +      + Y+
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINP-----WWYF 137

Query: 109 VLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVC----GTISARFI 164
            + +++ +        +  AYVAD      R++ +G  S   + + V     GT  +   
Sbjct: 138 GMISVSGVFS--VTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSANY 195

Query: 165 STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKR 224
             S     AT  +++   ++ I +PES+ ++             S   + S K+   F  
Sbjct: 196 GDSLVVLVATLVALLDICFILIAVPESLSEK---------IRPASWGAQISWKQADPFAS 246

Query: 225 LPSI--DDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMV 282
           L  +  D  V L+          I  FLS L +AG   S   YL+    F   +    + 
Sbjct: 247 LKKVGKDSTVLLI---------CITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIA 297

Query: 283 IAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILS 342
           + GI   ++Q + +  L  ++G    +  GL F  + +  Y     +W+ +AA   + +S
Sbjct: 298 MVGILSIVAQTVFLSKLMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMS 357

Query: 343 VFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSP 381
             + P +  ++S+   S++QG AQG ++GI    N + P
Sbjct: 358 SITFPAVSALISRNAESDQQGVAQGIVTGIRGLCNGLGP 396

Mus musculus (taxid: 10090)

>sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 144/341 (42%), Gaps = 35/341 (10%)

Query: 49  LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYY 108
           ++G  Q + GL + +  PL+G LSD +GRK  L   +  +  P+ ++  S      + Y+
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISP-----WWYF 137

Query: 109 VLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSA 168
            + +++ +        +  AYVAD      R++ +G  S   + + V       ++S++ 
Sbjct: 138 GMISVSGVFS--VTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSSNY 195

Query: 169 AFQAATAGSIISAVYMRIF--------LPESVRDEDLYTPILSSKAEISASCEESTKKLQ 220
                   + + A+    F        LPE +R       I   +A+  AS ++  K   
Sbjct: 196 GDSLVVLVATVVALLDICFILVAVPESLPEKIRPASWGAQISWKQADPFASLKKVGK--- 252

Query: 221 VFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADL 280
                   D  V L+          I  FLS L +AG   S   YL+    F   +    
Sbjct: 253 --------DSTVLLI---------CITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAF 295

Query: 281 MVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSI 340
           + + GI   ++Q + +  L  ++G    +  GL F  + +  Y     +W+ +AA   + 
Sbjct: 296 IAMVGILSILAQTVFLSKLMRSLGNKNTVLLGLGFQILQLAWYGFGAQAWMMWAAGTVAA 355

Query: 341 LSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSP 381
           +S  + P +  ++S+   S++QG AQG I+GI    N + P
Sbjct: 356 MSSITFPAVSALISRNAESDQQGVAQGIITGIRGLCNGLGP 396

Rattus norvegicus (taxid: 10116)

>sp|P02982|TCR1_ECOLX Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 36/326 (11%)

Query: 66  PLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCL 125
           P++G LSD++GR+ +L V +  + +  AI+A   +  F +  Y+ R +  +   G+   +
Sbjct: 61  PVLGALSDRFGRRPVLLVSLAGAAVDYAIMA---TAPFLWVLYIGRIVAGIT--GATGAV 115

Query: 126 SLAYVADNVPPGRRASVFGIFS-----GIVSGAFVCGTISARFISTSAAFQAATAG-SII 179
           + AY+AD      RA  FG  S     G+V+G  + G +            AA  G + +
Sbjct: 116 AGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAALNGLNFL 175

Query: 180 SAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP 239
           +  ++   LPES + E    P+        AS   + + + V   L ++  ++ L+   P
Sbjct: 176 TGCFL---LPESHKGER--RPLRREALNPLASFRWA-RGMTVVAALMAVFFIMQLVGQVP 229

Query: 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVL 299
               A  V F  +                +FH++       +   GI  +++Q ++   +
Sbjct: 230 A---ALWVIFGED----------------RFHWDATTIGISLAAFGILHSLAQAMITGPV 270

Query: 300 APTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVAS 359
           A  +GE R L  G++       L + A   W+ +   V         P L+ ++S+QV  
Sbjct: 271 AARLGERRALMLGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDE 330

Query: 360 NEQGKAQGCISGICSFANLVSPLAFS 385
             QG+ QG ++ + S  ++V PL F+
Sbjct: 331 ERQGQLQGSLAALTSLTSIVGPLLFT 356

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class G OS=Vibrio anguillarum GN=tetA PE=3 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 144/336 (42%), Gaps = 44/336 (13%)

Query: 62  LVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGS 121
           +V  P++G LSD YGR+ +L   +  + +   I+A   S    +  Y+ R ++ +   G+
Sbjct: 55  VVFAPMLGQLSDSYGRRPVLLASLAGAAVDYTIMA---SAPVLWVLYIGRLVSGV--TGA 109

Query: 122 IHCLSLAYVADNVPPGRRASVFGIF-----SGIVSGAFVCGTISARFISTSAAFQAATAG 176
              ++ + +AD+   G RA  FG       +G+++G  + G +    IS  A F AA   
Sbjct: 110 TGAVAASTIADSTGEGSRARWFGYMGACYGAGMIAGPALGGMLGG--ISAHAPFIAAALL 167

Query: 177 SIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK 236
           +  + +   IFL E+                   + +    K  V  RL   DD +  L 
Sbjct: 168 NGFAFLLACIFLKETHHSH-------------GGTGKPVRIKPFVLLRL---DDALRGLG 211

Query: 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMM 296
           +   F+   I+  +  +  A      + Y + +F +N       +   G    I Q  + 
Sbjct: 212 A--LFAVFFIIQLIGQVPAA----LWVIYGEDRFQWNTATVGLSLAAFGATHAIFQAFVT 265

Query: 297 PVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFS-----HPCLRT 351
             L+  +GE R L FG+        L + A   W+     VF IL + +      P L+ 
Sbjct: 266 GPLSSRLGERRTLLFGMAADGTGFVLLAFATQGWM-----VFPILLLLAAGGVGMPALQA 320

Query: 352 IVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387
           ++S  V+SN+QG  QG ++ + + +++  PL F+ L
Sbjct: 321 MLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGFTAL 356

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Vibrio anguillarum (taxid: 55601)

>sp|P02981|TCR3_ECOLX Tetracycline resistance protein, class C OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 135/322 (41%), Gaps = 34/322 (10%)

Query: 66  PLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCL 125
           P++G LSD++GR+ +L   +  + I  AI+A +      YA  ++  +T     G+   +
Sbjct: 61  PVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWILYAGRIVAGIT-----GATGAV 115

Query: 126 SLAYVADNVPPGRRASVFGIFS-----GIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           + AY+AD      RA  FG+ S     G+V+G    G + A  IS  A F AA   + ++
Sbjct: 116 AGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGA--ISLHAPFLAAAVLNGLN 173

Query: 181 AVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT 240
            +     + ES + E    P+   +A    S     + + +   L ++  ++ L+   P 
Sbjct: 174 LLLGCFLMQESHKGERRPMPL---RAFNPVSSFRWARGMTIVAALMTVFFIMQLVGQVPA 230

Query: 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLA 300
              A  V F  +                +F ++       + + GI   ++Q  +     
Sbjct: 231 ---ALWVIFGED----------------RFRWSATMIGLSLAVFGILHALAQAFVTGPAT 271

Query: 301 PTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASN 360
              GE + +  G+    +   L + A   W+ +   +         P L+ ++S+QV  +
Sbjct: 272 KRFGEKQAIIAGMAADALGYVLLAFATRGWMAFPIMILLASGGIGMPALQAMLSRQVDDD 331

Query: 361 EQGKAQGCISGICSFANLVSPL 382
            QG+ QG ++ + S  ++  PL
Sbjct: 332 HQGQLQGSLAALTSLTSITGPL 353

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|Q07282|TCR5_ECOLX Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/330 (20%), Positives = 142/330 (43%), Gaps = 29/330 (8%)

Query: 66  PLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCL 125
           PL+G  SD+ GR+ +L + +  + +  A++A   + +  +  Y+ R +  +   G+   +
Sbjct: 59  PLLGRWSDRIGRRPVLLLSLLGATLDYALMA---TASVVWVLYLGRLIAGI--TGATGAV 113

Query: 126 SLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF---ISTSAAFQAATAGSIISAV 182
           + + +AD  P   R   FG+      G  + G +   F   +S  A F  A A + + A 
Sbjct: 114 AASTIADVTPEESRTHWFGMMGACFGGGMIAGPVIGGFAGQLSVQAPFMFAAAINGL-AF 172

Query: 183 YMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFS 242
            + +F+     + +  +  L ++     +  E+T          SI +M+     SP  S
Sbjct: 173 LVSLFILHETHNANQVSDELKNE-----TINETTS---------SIREMI-----SP-LS 212

Query: 243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT 302
              +V F+  L         + + + +F ++       + + G+   + Q +    +A  
Sbjct: 213 GLLVVFFIIQLIGQIPATLWVLFGEERFAWDGVMVGVSLAVFGLTHALFQGLAAGFIAKH 272

Query: 303 VGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQ 362
           +GE + ++ G+L     +FL +V   SW+ +   +       + P L+ I+S +V    Q
Sbjct: 273 LGERKAIAVGILADGCGLFLLAVITQSWMVWPVLLLLACGGITLPALQGIISVRVGQVAQ 332

Query: 363 GKAQGCISGICSFANLVSPLAFSPLTGDCR 392
           G+ QG ++ +     ++ PL F+ L    R
Sbjct: 333 GQLQGVLTSLTHLTAVIGPLVFAFLYSATR 362

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
224083179	447	predicted protein [Populus trichocarpa]	0.982	0.870	0.693	1e-160
255539072	442	tetracycline transporter, putative [Rici	0.982	0.880	0.710	1e-159
118486381	450	unknown [Populus trichocarpa]	0.982	0.864	0.690	1e-157
225459764	442	PREDICTED: hippocampus abundant transcri	0.979	0.877	0.691	1e-155
356517952	432	PREDICTED: hippocampus abundant transcri	0.974	0.893	0.658	1e-150
356509042	432	PREDICTED: hippocampus abundant transcri	0.979	0.898	0.653	1e-148
357467111	454	Hippocampus abundant transcript-like pro	0.982	0.856	0.624	1e-148
225428113	439	PREDICTED: hippocampus abundant transcri	0.979	0.883	0.623	1e-141
224105113	442	predicted protein [Populus trichocarpa]	0.977	0.875	0.628	1e-139
147804798	408	hypothetical protein VITISV_038996 [Viti	0.906	0.879	0.632	1e-136

>gi|224083179|ref|XP_002306959.1| predicted protein [Populus trichocarpa] gi|222856408|gb|EEE93955.1| predicted protein [Populus trichocarpa]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/395 (69%), Positives = 329/395 (83%), Gaps = 6/395 (1%)

Query: 1   MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLG 60
           M+  SG+SHLFITIF+H FS  MV PAITDVTMSA+CPGRDECSLAIYL+GFQQAIIGLG
Sbjct: 1   MKTLSGLSHLFITIFLHNFSAVMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLG 60

Query: 61  TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120
           TLVMMPL+GN+SDKYGRKALLTVP++L I+P AILAYSR+RNFFYAYYV++TL AMVCEG
Sbjct: 61  TLVMMPLIGNMSDKYGRKALLTVPLSLVIVPSAILAYSRTRNFFYAYYVVKTLIAMVCEG 120

Query: 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           S+ CL+LAYVADNVP GRRAS FGI SGI S AFVCG +S RF+ST++ FQ + + +I S
Sbjct: 121 SVPCLALAYVADNVPEGRRASAFGILSGIASSAFVCGNLSTRFLSTASTFQVSASVAIAS 180

Query: 181 AVYMRIFLPESVRDEDLYTPILSS------KAEISASCEESTKKLQVFKRLPSIDDMVHL 234
            VYMR FL +S+ DE L  PIL+S      K +  A+ E  +K +Q+FK  PS++DM+ L
Sbjct: 181 LVYMRFFLQDSIIDEQLTAPILTSNGKPKGKGKDYATNEIPSKNVQIFKSAPSLEDMLCL 240

Query: 235 LKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLI 294
           LKSS T SQAA+VAF  +LA+ GL  S++YYLKA+FHFNK+QFADLMVI GIAGT+SQL+
Sbjct: 241 LKSSVTLSQAAVVAFFYSLAEVGLHASLLYYLKARFHFNKDQFADLMVITGIAGTLSQLV 300

Query: 295 MMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVS 354
           +MP+LAP +GEARLL+ GL F CVH+FLYS+AW+ WVPY AA+FS+L VFS PC+R+IVS
Sbjct: 301 LMPILAPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVAAMFSVLIVFSQPCMRSIVS 360

Query: 355 KQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG 389
           KQV S EQGKAQGCISGI SFAN++SPL FSPLT 
Sbjct: 361 KQVGSCEQGKAQGCISGISSFANVISPLLFSPLTA 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539072|ref|XP_002510601.1| tetracycline transporter, putative [Ricinus communis] gi|223551302|gb|EEF52788.1| tetracycline transporter, putative [Ricinus communis]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/390 (71%), Positives = 336/390 (86%), Gaps = 1/390 (0%)

Query: 1   MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLG 60
           MEK SG+SHLF+TIF+H FST MV PAITDVTMSA+CPGRDECSLAIYL+GFQQAIIGLG
Sbjct: 1   MEKLSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLG 60

Query: 61  TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120
           TLVMMPLVGNLSDKYGRKALLT+P++L++IPLA LAYSR+  FFYAYYV++TLTAMVCEG
Sbjct: 61  TLVMMPLVGNLSDKYGRKALLTIPMSLTVIPLATLAYSRTTYFFYAYYVMKTLTAMVCEG 120

Query: 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           S+HCL+LAYVADNVP  RRAS FGI SGI S AFVCGT+S RF+ST++ FQ + + ++++
Sbjct: 121 SVHCLALAYVADNVPEARRASAFGILSGIGSSAFVCGTLSTRFLSTASTFQVSASMAVVA 180

Query: 181 AVYMRIFLPESVRDEDLYTPILSS-KAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP 239
            VYM++FL +S+ D++L TPI+S+ K ++    E S++  QVF+ +PS++DM+ LLKSS 
Sbjct: 181 IVYMKVFLQDSIVDKNLTTPIISNGKGKVYVQIENSSENEQVFRTMPSLEDMICLLKSSV 240

Query: 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVL 299
           TF+QAAIVAF  NL++ GL  S+MYYLKA+FHFNKNQFADLMVI+GIAGTISQL++MP+L
Sbjct: 241 TFTQAAIVAFFINLSEVGLHASLMYYLKARFHFNKNQFADLMVISGIAGTISQLLLMPLL 300

Query: 300 APTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVAS 359
           AP +GEARLLS GL F C+HMFLYS+AWS WVPYAAA+ SIL VFS PCLRTIVSKQV +
Sbjct: 301 APALGEARLLSVGLFFTCIHMFLYSIAWSFWVPYAAALLSILFVFSQPCLRTIVSKQVGA 360

Query: 360 NEQGKAQGCISGICSFANLVSPLAFSPLTG 389
            EQGKAQG +SG+ S AN+VSPL FSPLT 
Sbjct: 361 CEQGKAQGFVSGLGSLANVVSPLVFSPLTA 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486381|gb|ABK95031.1| unknown [Populus trichocarpa]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/398 (69%), Positives = 329/398 (82%), Gaps = 9/398 (2%)

Query: 1   MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLG 60
           MEK SG+SHLF+TIF+H FST MV PAITDVTMSA+CPGRDECSLAIYL+GFQQAIIGLG
Sbjct: 1   MEKLSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLG 60

Query: 61  TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120
           TLV MPL+GN+SDKYGRKALLTVP++L I+P AILAYSR+RNFFYAYYV+RTL AMVCEG
Sbjct: 61  TLVTMPLIGNMSDKYGRKALLTVPMSLIIVPSAILAYSRTRNFFYAYYVVRTLMAMVCEG 120

Query: 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           S+ CL+LAYVADNVP  RRAS FGI SGI S AFVCG +S RF+STS+ FQ +   +I +
Sbjct: 121 SVQCLALAYVADNVPESRRASTFGILSGIASSAFVCGNLSTRFLSTSSTFQVSALVAIAA 180

Query: 181 AVYMRIFLPESVRDEDLYTPILS------SKAEISASC---EESTKKLQVFKRLPSIDDM 231
            VYMR FL ES+ DE L TPIL+       K + +A+C   E  +K +QVFK  PS++DM
Sbjct: 181 LVYMRFFLQESIIDEQLSTPILTYKGNGKGKGKANAACFAHEIPSKNVQVFKSAPSLEDM 240

Query: 232 VHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTIS 291
           + LLKSS T SQAA+VAF  +LA+ GL  S+MYYLKA+FHF+K+QFA LMVI+GIAGT+S
Sbjct: 241 LCLLKSSVTLSQAAVVAFFYSLAEVGLHASLMYYLKAQFHFSKDQFAVLMVISGIAGTVS 300

Query: 292 QLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRT 351
           QL++MP+L P +GEARLL+ GL F CVH+FLYS+AW+ WVPY A++FS+L VFS PC+R+
Sbjct: 301 QLVIMPLLTPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVASMFSLLFVFSQPCMRS 360

Query: 352 IVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG 389
           IVSKQV S EQGKAQGCISGI SFAN++SPL FSPLT 
Sbjct: 361 IVSKQVGSCEQGKAQGCISGISSFANVISPLVFSPLTA 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459764|ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|302141709|emb|CBI18912.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 269/389 (69%), Positives = 329/389 (84%), Gaps = 1/389 (0%)

Query: 1   MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLG 60
           MEK SG+ HLF+T+F+  F+T MV PAITDVTM+A+CPGRDECS+AIYL+GFQQ IIGLG
Sbjct: 1   MEKLSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGRDECSIAIYLTGFQQVIIGLG 60

Query: 61  TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120
           TLVMMPLVGNLSD YGRKALLT+P+ L+IIPLAILA+SRSRNFFYAY+VL+TLT+MVCEG
Sbjct: 61  TLVMMPLVGNLSDMYGRKALLTIPMCLTIIPLAILAWSRSRNFFYAYFVLKTLTSMVCEG 120

Query: 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           S+HCL+LAYVADN+P  RRAS FG+ SG+ S AFVCGT+SARF+ TS+ FQ A + + ++
Sbjct: 121 SVHCLTLAYVADNIPEIRRASAFGVLSGVGSSAFVCGTLSARFLKTSSTFQVAASVAAVA 180

Query: 181 AVYMRIFLPESV-RDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP 239
           AVYM++FLP+SV +D  L   IL  K  +     ES +   VFK +PS+DDM+ LL++S 
Sbjct: 181 AVYMKLFLPDSVIKDGVLDRAILEQKPCVIHLDGESAQDSPVFKSMPSLDDMLSLLQTSS 240

Query: 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVL 299
           TF++AAIVAF SNL D GL  S+MYYLKA+FHFNK+QFADLM+I+GIAGTISQL++MP+L
Sbjct: 241 TFTKAAIVAFFSNLGDVGLHTSLMYYLKARFHFNKHQFADLMMISGIAGTISQLVLMPIL 300

Query: 300 APTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVAS 359
           APT+GE +LL+ GLLF C HMFLYS+AWS WVPYAAA+FSIL VF+ PC+R+I SKQV  
Sbjct: 301 APTIGEEKLLAIGLLFSCSHMFLYSIAWSFWVPYAAAMFSILIVFAPPCIRSIASKQVGP 360

Query: 360 NEQGKAQGCISGICSFANLVSPLAFSPLT 388
           +EQGK QGCISGI SFA+LVSPLAF+PLT
Sbjct: 361 SEQGKVQGCISGISSFAHLVSPLAFTPLT 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517952|ref|XP_003527649.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/392 (65%), Positives = 322/392 (82%), Gaps = 6/392 (1%)

Query: 1   MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLG 60
           M+K  G+SHLF+ +F+H FS  MV PAITDVTM+A+CPG+DECSLAIY++GFQQA+IGLG
Sbjct: 1   MDKLYGLSHLFMAVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLG 60

Query: 61  TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120
           TLVMMPL+GNLSDKYGRKA+LTVP+ L+IIP+ ILAYSR++ FFY YYV + L +M+CEG
Sbjct: 61  TLVMMPLLGNLSDKYGRKAILTVPMILTIIPVGILAYSRTKKFFYVYYVFKILISMICEG 120

Query: 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           S+ CL LAYVADN+P   R++ FGI SGI S AFVCGT+SARF+ST+  FQ +T  ++I 
Sbjct: 121 SVPCLGLAYVADNIPESGRSTAFGILSGIASAAFVCGTLSARFLSTALTFQVSTLIAVIG 180

Query: 181 AVYMRIFLPES-VRDEDLYTPILSSKAEISASCE---ESTKKLQVFKRLPSIDDMVHLLK 236
           A+YM+ FL +S + D+ LYTPI+S +  I +      ES K L  FK L SI+D+   L 
Sbjct: 181 ALYMQFFLRDSAIDDKHLYTPIISQENPIISKVNGKLESKKHL--FKALRSIEDLTSFLN 238

Query: 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMM 296
           SS T +QAAIVAF ++LAD GL GS++Y+LKA+FHF+KNQFADLMVI+GIAGT+SQL++M
Sbjct: 239 SSLTITQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLM 298

Query: 297 PVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQ 356
           P+LAP +GEARLLS GL F C+HMFLYS+AWSS VPYA+A+FSIL VFSHPC+R+IVSKQ
Sbjct: 299 PILAPILGEARLLSVGLFFHCIHMFLYSIAWSSLVPYASAMFSILFVFSHPCIRSIVSKQ 358

Query: 357 VASNEQGKAQGCISGICSFANLVSPLAFSPLT 388
              +EQGKAQGCISGICS A++VSPL FSPLT
Sbjct: 359 AGPHEQGKAQGCISGICSIAHIVSPLVFSPLT 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509042|ref|XP_003523261.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/390 (65%), Positives = 320/390 (82%), Gaps = 2/390 (0%)

Query: 1   MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLG 60
           M+K  G+SHLF+T+F+H FS  MV PAITDVTM+A+CPG+DECSLAIY++GFQQA+IGLG
Sbjct: 1   MDKLYGLSHLFMTVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLG 60

Query: 61  TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120
           TLVMMPL+GNLSDKYGRKA+LT+P+ L+IIP+ ILAYSR++ FFY YYV + L +MVCEG
Sbjct: 61  TLVMMPLLGNLSDKYGRKAILTLPMILTIIPVGILAYSRTKKFFYVYYVFKILISMVCEG 120

Query: 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           S+ CL+LAYVADNVP   R++VFGI SGI S AFVC T+SARF+S++  FQ +T  ++I 
Sbjct: 121 SVPCLALAYVADNVPESGRSTVFGILSGIGSAAFVCATLSARFLSSALTFQVSTLIAVIG 180

Query: 181 AVYMRIFLPESV-RDEDLYTPILSSKAEISASCEESTK-KLQVFKRLPSIDDMVHLLKSS 238
           A+YM+ FL +SV  D+ LYTPI+S    I +    + + K  + K L SI D+   L SS
Sbjct: 181 ALYMQFFLRDSVIDDKHLYTPIISQGNPIISKVNGNLESKKHLLKALRSIKDLTSFLNSS 240

Query: 239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPV 298
            T +QAAIVAF ++LAD GL GS++Y+LKA+FHF+KNQFADLMVI+GIAGT+SQL++MP+
Sbjct: 241 LTINQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMPI 300

Query: 299 LAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVA 358
           LAP +GE RLLS GL F CVHMFLYS+AWSS VPYA+A+FSIL VFSHPC+R+IVSK+  
Sbjct: 301 LAPILGETRLLSVGLFFHCVHMFLYSMAWSSLVPYASAMFSILYVFSHPCIRSIVSKEAG 360

Query: 359 SNEQGKAQGCISGICSFANLVSPLAFSPLT 388
            +EQGKAQGCISGICS A++VSPL FSPLT
Sbjct: 361 PHEQGKAQGCISGICSIAHIVSPLVFSPLT 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467111|ref|XP_003603840.1| Hippocampus abundant transcript-like protein [Medicago truncatula] gi|355492888|gb|AES74091.1| Hippocampus abundant transcript-like protein [Medicago truncatula]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/413 (62%), Positives = 322/413 (77%), Gaps = 24/413 (5%)

Query: 1   MEKKS--GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAI-- 56
           MEK +  G+SHLF+T+F+H  ST MV PAITDVTM+A+CPG+DECS+AIYL+GFQQA+  
Sbjct: 1   MEKLNMYGLSHLFMTVFLHNLSTFMVQPAITDVTMAALCPGQDECSIAIYLTGFQQAVRY 60

Query: 57  ------------------IGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS 98
                             IG+GTLVMMP++G+LSDKYGRKA+LT+P+TL IIPL ILAYS
Sbjct: 61  IVSPIYLNILHSFSKLTMIGMGTLVMMPILGDLSDKYGRKAILTLPMTLMIIPLGILAYS 120

Query: 99  RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGT 158
           R++ FFY YYV + +  M+C+G + CL+LAYVADNVP GRR+S FG+ SGI S AFVCGT
Sbjct: 121 RTKTFFYVYYVFKIIINMICDGCVPCLALAYVADNVPEGRRSSAFGVLSGIGSSAFVCGT 180

Query: 159 ISARFISTSAAFQAATAGSIISAVYMRIFLPESVRDED-LYTPILSS-KAEISASCEEST 216
           ++ARF+S +  FQ +T  +++ AVYM+IFL +SV DE+ LYTPI+S  K  I+    +S 
Sbjct: 181 VAARFLSAAQTFQVSTFVAVLGAVYMQIFLRDSVADENQLYTPIISQGKPPIAKINGKSK 240

Query: 217 KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ 276
             + + K L S+ D+   L SS   +QA+IVAF SNLAD GL GSMMYYLKA+FHF+KN 
Sbjct: 241 ANMPLLKALSSLRDITSFLNSSKIITQASIVAFFSNLADVGLHGSMMYYLKARFHFDKNH 300

Query: 277 FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAA 336
           FADLM+I+GIAGT+SQL +MP+ APT+GEARLLS GL F CVHMF+YS+AWSSWVPYAAA
Sbjct: 301 FADLMIISGIAGTVSQLFLMPIFAPTLGEARLLSIGLFFHCVHMFIYSIAWSSWVPYAAA 360

Query: 337 VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG 389
           +FSIL VFS PC+R+IVSKQV   EQG+AQGCISGICS A++VSPLAFSPLT 
Sbjct: 361 MFSILFVFSQPCIRSIVSKQVDPREQGRAQGCISGICSIAHIVSPLAFSPLTA 413

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428113|ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|297744560|emb|CBI37822.3| unnamed protein product [Vitis vinifera]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/388 (62%), Positives = 310/388 (79%)

Query: 1   MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLG 60
           MEK +G++HLF+T+ +  FS  +V PAITDVTMSA+CPG+DECSLAIYLSGFQQAIIGLG
Sbjct: 1   MEKLAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGLG 60

Query: 61  TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120
           T+VM P++GNLSD+YGRKALLT+P+ LSIIPLAILAYSR+   FYAY+V+RTLTAMV EG
Sbjct: 61  TVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGEG 120

Query: 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           SI+CL+LAYVADN+  G+RAS FG+ SG+ S AFVCGT++ARF+ST++ FQ AT  S+I+
Sbjct: 121 SINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVATLVSMIA 180

Query: 181 AVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT 240
            VYMR+FL E+    D    +L  +  +S     S++K+Q FK++PS+ D++ LLK    
Sbjct: 181 TVYMRVFLKETFPKGDSSQALLKKEPGMSPDDGNSSEKIQTFKKIPSVGDLISLLKCRAA 240

Query: 241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLA 300
           FSQAA+V F + LA+ GLQ S++Y+LKA+FHFNKNQFAD+M+I G+ GTISQL+ MP+LA
Sbjct: 241 FSQAAVVVFFNGLAEGGLQASLLYFLKARFHFNKNQFADIMLIVGVMGTISQLLFMPLLA 300

Query: 301 PTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASN 360
           P V E +LLS GL  GC ++FL S+AWS WVPYA A  +  +VF++PC+R+I SKQV  N
Sbjct: 301 PRVSEEKLLSIGLFMGCTNIFLNSIAWSFWVPYAIAALAAFAVFANPCVRSIASKQVGPN 360

Query: 361 EQGKAQGCISGICSFANLVSPLAFSPLT 388
           EQGKAQGCISGI S A ++SPL FSPLT
Sbjct: 361 EQGKAQGCISGISSSAQIISPLIFSPLT 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105113|ref|XP_002313691.1| predicted protein [Populus trichocarpa] gi|222850099|gb|EEE87646.1| predicted protein [Populus trichocarpa]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/393 (62%), Positives = 310/393 (78%), Gaps = 6/393 (1%)

Query: 1   MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLG 60
           MEK + + HLF+T+F+  F + MV PA+TDVTM AVCPG+DECSLAIYL+GFQQA IG+G
Sbjct: 1   MEKFTELIHLFVTVFLSTFGSLMVLPAVTDVTMVAVCPGQDECSLAIYLTGFQQASIGMG 60

Query: 61  TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120
           T+VM+PL+GNLSD+YGRKALLT+P+TLSIIPL ILAYSR+  FFYAYY LRTLTAM+CEG
Sbjct: 61  TVVMLPLIGNLSDQYGRKALLTLPMTLSIIPLVILAYSRTTGFFYAYYALRTLTAMICEG 120

Query: 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           SI CL+LAYVADNV   +R SVFGI SGI + A VCGT++ARF+ST+  FQ A   S+++
Sbjct: 121 SIDCLALAYVADNVLERQRTSVFGILSGITTAALVCGTLAARFLSTALTFQVAALLSMLA 180

Query: 181 AVYMRIFLPESV-RDEDLYTPILSSKAEISASCEES---TKKLQVFKRLPSIDDMVHLLK 236
           AVYMRIFL ES+ + E+L  PIL S  +    C++     +K  V K++PSI  ++ LLK
Sbjct: 181 AVYMRIFLEESLPQSENLTQPILKSGQD--DHCQDDGDLPRKPMVSKKIPSIQAIISLLK 238

Query: 237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMM 296
           SS TFSQAAIVAF  +L+  GLQ S+MYYLKA+FHF+KNQ+ADLM++ G++G  SQL+ M
Sbjct: 239 SSVTFSQAAIVAFFHSLSYGGLQASIMYYLKARFHFSKNQYADLMLLVGVSGMASQLLFM 298

Query: 297 PVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQ 356
           P+LAP V E +LL+ GLL G  +  LYSVA S+WVPYA  +FS+ +VF  PCLR+IVSKQ
Sbjct: 299 PLLAPLVAEEKLLAIGLLGGIANALLYSVACSAWVPYATTIFSVFAVFIPPCLRSIVSKQ 358

Query: 357 VASNEQGKAQGCISGICSFANLVSPLAFSPLTG 389
           +  NEQGKAQGCISGI S AN++SPL +SPLT 
Sbjct: 359 IGPNEQGKAQGCISGIISLANIISPLIYSPLTA 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804798|emb|CAN64703.1| hypothetical protein VITISV_038996 [Vitis vinifera]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/389 (63%), Positives = 303/389 (77%), Gaps = 30/389 (7%)

Query: 1   MEKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLG 60
           MEK SG+ HLF+T+F+  F+T MV PAITDVTM+A+CPGRDECS+AIYL+GFQQ IIGLG
Sbjct: 1   MEKLSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGRDECSIAIYLTGFQQVIIGLG 60

Query: 61  TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG 120
           TLVMMPLVGNLSD YGRKALLT+P+ L+IIPLAILA+SRSRNFFYAY+VL+TLT+MVCEG
Sbjct: 61  TLVMMPLVGNLSDMYGRKALLTIPMCLTIIPLAILAWSRSRNFFYAYFVLKTLTSMVCEG 120

Query: 121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIIS 180
           S+HCL+LAYVADN+P  RRAS FG+ SG+ S AFVCGT+SARF+ TS+ FQ A + + ++
Sbjct: 121 SVHCLTLAYVADNIPEIRRASAFGVLSGVGSSAFVCGTLSARFLKTSSTFQVAASVAAVA 180

Query: 181 AVYMRIFLPESV-RDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP 239
           AVYM++FLP+SV +D  L   IL  K  +     ES +   VFK +PS+DDM+ LL++S 
Sbjct: 181 AVYMKLFLPDSVIKDGVLDRAILEQKPCVIHLDGESAQDSPVFKSMPSLDDMLSLLQTSS 240

Query: 240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVL 299
           TF++AAIVAF SNL D GL  S+MYYLKA+FHFNK+QFADLM+I+GIAGTISQL++MP+L
Sbjct: 241 TFTKAAIVAFFSNLGDVGLHTSLMYYLKARFHFNKHQFADLMMISGIAGTISQLVLMPIL 300

Query: 300 APTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVAS 359
           APT+GE +LL+ GLLF C H                             +R+I SKQV  
Sbjct: 301 APTIGEEKLLAIGLLFSCSH-----------------------------IRSIASKQVGP 331

Query: 360 NEQGKAQGCISGICSFANLVSPLAFSPLT 388
           +EQGK QGCISGI SFA+LVSPLAF+PLT
Sbjct: 332 SEQGKVQGCISGISSFAHLVSPLAFTPLT 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
TAIR|locus:2039450	456	AT2G16990 "AT2G16990" [Arabido	0.967	0.839	0.449	2.5e-90
TAIR|locus:2039440	461	AT2G16980 [Arabidopsis thalian	0.959	0.824	0.454	8.6e-88
TAIR|locus:2039430	446	MEE15 "maternal effect embryo	0.924	0.820	0.426	1e-77
TAIR|locus:2157592	282	AT5G42210 "AT5G42210" [Arabido	0.545	0.765	0.571	8.8e-63
WB|WBGene00020798	550	T25D3.4 [Caenorhabditis elegan	0.797	0.574	0.254	6.9e-20
FB|FBgn0037005	447	CG5078 [Drosophila melanogaste	0.371	0.328	0.256	6e-17
UNIPROTKB|A4IF94	502	HIATL1 "Hippocampus abundant t	0.608	0.480	0.264	1.4e-14
UNIPROTKB|F1PLI9	506	LOC476363 "Uncharacterized pro	0.608	0.476	0.256	3.9e-14
UNIPROTKB|Q5SR56	506	HIATL1 "Hippocampus abundant t	0.608	0.476	0.252	5.1e-14
UNIPROTKB|D4A4I2	488	D4A4I2 "Uncharacterized protei	0.606	0.491	0.259	7.9e-14

TAIR|locus:2039450 AT2G16990 "AT2G16990" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 178/396 (44%), Positives = 258/396 (65%)

Query:     6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDE-CSLAIYLSGFQQAIIGLGTLVM 64
             G+ H+  T+F+  F+  MV P ITDVT++AVC G D+ CSLA+YL+GFQQ  IG+GT++M
Sbjct:     7 GLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIGMGTMIM 66

Query:    65 MPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHC 124
             MP++GNLSD+YG K +LT+P+ LSI+P  IL Y R   FFY +Y+ + LT+MVCEG++ C
Sbjct:    67 MPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVCEGTVDC 126

Query:   125 LSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYM 184
             L+ AYVA N+    R S FGI +GI + A + GT+ ARF+  +  FQ +     +  VYM
Sbjct:   127 LAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFFVGLVYM 186

Query:   185 RIFLPESVRDE---DLYTPILSSKAEISASC--------EESTKKLQVF-KRLPSIDDMV 232
             R+FL E + D+   DL+      +   S +          +   K QVF K+  S+ DM+
Sbjct:   187 RVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYSSLKDMI 246

Query:   233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQ 292
              L+K+S  F QA +V F S+ +D+G++ + +Y+LKA+F F+K QFADL+++  I G+ISQ
Sbjct:   247 SLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITIVGSISQ 306

Query:   293 LIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTI 352
             L ++P  A  +GE +LLS GL    ++M + S++W+ WVPY   VF   ++F  P +  I
Sbjct:   307 LFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVMPSVCGI 366

Query:   353 VSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388
              S+QV   EQGK QGCISG+ SF  +V+P  FSPLT
Sbjct:   367 ASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLT 402

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2039440 AT2G16980 [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 180/396 (45%), Positives = 260/396 (65%)

Query:     9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDE-CSLAIYLSGFQQAIIGLGTLVMMPL 67
             HL +T+F+   +  ++ P +TDVT++AVC G D+ CSLA+YL+G QQ  +G+GT+VMMP+
Sbjct:    11 HLLVTVFLSGLAEYLIRPVMTDVTVAAVCSGLDDSCSLAVYLTGVQQVTVGMGTMVMMPV 70

Query:    68 VGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSL 127
             +GNLSD+YG KA+LT+P+ LS++P AIL Y R  NFFYA+YV++TL  MVC+G+I CL+ 
Sbjct:    71 IGNLSDRYGIKAMLTLPMCLSVLPPAILGYRRDTNFFYAFYVIKTLFDMVCQGTIDCLAN 130

Query:   128 AYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIF 187
             AYVA NV   +R S+FGI +G+ S + VC ++SARF+S ++ FQ A     I  VYMR+F
Sbjct:   131 AYVAKNVHGTKRISMFGILAGVSSISGVCASLSARFLSIASTFQVAAISLFIGLVYMRVF 190

Query:   188 LPESVRDEDLYTPILS----SKAEISASCE----------ESTKKLQVFK-RLPSIDDMV 232
             L E ++D D      S    S  E+    +          ++  K  VF  +  S  DMV
Sbjct:   191 LKERLQDADDDDEADSGGCRSHQEVHNGGDLKMLTEPILRDAPTKTHVFNSKYSSWKDMV 250

Query:   233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQ 292
              L+ +S    QA +V F +  +++G   ++MY+LKA+F FNKN FA+L ++  I G+ISQ
Sbjct:   251 SLINNSTILIQALVVTFFATFSESGRGSALMYFLKARFGFNKNDFAELFLLVTIIGSISQ 310

Query:   293 LIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTI 352
             L ++P L+ T+GE ++LS GLL    +    SVAWS WVPYA  +    ++F  P +  I
Sbjct:   311 LFILPTLSSTIGERKVLSTGLLMEFFNATCLSVAWSPWVPYAMTMLVPGAMFVMPSVCGI 370

Query:   353 VSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388
              S+QV S+EQGK QGCISG+ +FA +V+P  +SPLT
Sbjct:   371 ASRQVGSSEQGKVQGCISGVRAFAQVVAPFVYSPLT 406

GO:0005215 "transporter activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2039430 MEE15 "maternal effect embryo arrest 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 169/396 (42%), Positives = 244/396 (61%)

Query:     9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDE-CSLAIYLSGFQQAIIGLGTLVMMPL 67
             HL  T+F+  FS  +V P +TDVT++AVC G +E CSLA+YL+G +Q  +GLGT+VMMP+
Sbjct:    11 HLLTTVFLSGFSEFLVKPVMTDVTVAAVCSGLNETCSLAVYLTGVEQVTVGLGTMVMMPV 70

Query:    68 VGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSL 127
             +GNLSD+YG K LLT+P+ LSI+P AILAY R  NFFYA+Y+ + L  M           
Sbjct:    71 IGNLSDRYGIKTLLTLPMCLSILPPAILAYRRDTNFFYAFYITKILFDM----------- 119

Query:   128 AYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAATAGSIISAVYMRIF 187
                A NV   +R S+FG+ +G+ S + VC T SAR +  ++ FQ A        VYMR+F
Sbjct:   120 ---AKNVCGRKRISMFGVLAGVRSISGVCATFSARLLPIASIFQVAAISFFFGLVYMRVF 176

Query:   188 LPESVRDEDL----YTPILSSK-----AEISASCE----ESTKKLQVF--KRLPSIDDMV 232
             L E + D+D          S +      +++   E    ++  K+ +    +  S+ DMV
Sbjct:   177 LKERLHDDDEDDCDEDDNTSGRNHHDGGDLTMLAEPILRDAPTKIHIVLNTKYSSLKDMV 236

Query:   233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQ 292
              L+K+S    Q  +V F +  A +G+Q + +Y+LKA+F FNKN FA+L+++  I G+ISQ
Sbjct:   237 SLIKNSTILVQTLVVTFFATFAQSGMQSAFLYFLKARFGFNKNDFAELILLVTIIGSISQ 296

Query:   293 LIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTI 352
             L ++P L   +GE R+LS GLL   V+    SV+WS+WVPYA  V   +++F  P +  I
Sbjct:   297 LFILPKLVSAIGERRVLSTGLLMDSVNAACLSVSWSAWVPYATTVLVPVTMFVMPSVCGI 356

Query:   353 VSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388
              S+QV   EQGK QGCISG+ SF+ +V+P  +SPLT
Sbjct:   357 ASRQVGPGEQGKVQGCISGVKSFSGVVAPFIYSPLT 392

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2157592 AT5G42210 "AT5G42210" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 124/217 (57%), Positives = 161/217 (74%)

Query:   173 ATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEEST-KKLQVFKRLPSIDDM 231
             + A  I+S +YMR+FLP+S+RD  L  PI+ ++   S   E+    + ++F+ +  + +M
Sbjct:    20 SAAMGILSTLYMRLFLPDSIRDNSLGAPIVINEKLSSPLLEDCPGHRNRIFRAIRLVHEM 79

Query:   232 VHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTIS 291
               L++SS    Q A+V+F S+LA+AGL  S MYYLKAKFHFNK+QFADLM+I G +G+IS
Sbjct:    80 ASLMRSSVPLFQVAMVSFFSSLAEAGLHASSMYYLKAKFHFNKDQFADLMIIVGASGSIS 139

Query:   292 QLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRT 351
             QL+ MPVL P + E RLLS GL FGC HMFL  VAWSSWVPY AA+F++ S+F   C+R+
Sbjct:   140 QLLFMPVLVPALKEERLLSIGLFFGCAHMFLLCVAWSSWVPYMAAIFALFSIFPSSCMRS 199

Query:   352 IVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388
             IVSKQVAS EQGKAQG IS ICS AN++SPLAFSPLT
Sbjct:   200 IVSKQVASYEQGKAQGIISSICSLANVISPLAFSPLT 236

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

WB|WBGene00020798 T25D3.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 259 (96.2 bits), Expect = 6.9e-20, P = 6.9e-20
 Identities = 87/342 (25%), Positives = 149/342 (43%)

Query:    49 LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYY 108
             ++G    + GL + +  PLVG LSD +GRKA L + +  + +P+  L  S      + Y+
Sbjct:   111 MNGLVLGVKGLLSFLSAPLVGALSDVWGRKAFLILTVLCTCMPIPCLKISP-----WWYF 165

Query:   109 VLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIST-- 166
              L +L+ +        + LAYVAD      R+S +G+ S   + + V       +IS   
Sbjct:   166 SLFSLSGLF--SVTFSVILAYVADITDKSERSSAYGLVSATFAASLVTSPALGAYISEVY 223

Query:   167 --SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKR 224
               S     AT  S+   +++ +F+PES          L S+   + S  + T   +VF  
Sbjct:   224 GDSLVVLLATIVSVADVIFIVLFVPES----------LPSRRN-TGSVSQITPN-EVFN- 270

Query:   225 LPSIDDM--VHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMV 282
               S D    + ++       Q A + FLS L ++G       YLK    F+    A  + 
Sbjct:   271 WQSADPFGSLRIVWEDKLVLQLATIVFLSYLPESGQFSCFFVYLKLVVGFSPEAVAMYIG 330

Query:   283 IAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILS 342
             + GI   ++Q   +  L    G    ++ GL+F  + +  Y +    W+ ++A V + +S
Sbjct:   331 LVGILSVVAQTGFLHCLTSRFGTKHTITLGLIFQLIQLTWYGLGTQYWMMWSAGVLAAMS 390

Query:   343 VFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAF 384
               ++P +   VS     ++QG  QG I+GI        P  F
Sbjct:   391 SITYPSISAFVSILSDKDKQGTVQGVITGIRGLCTGFGPALF 432

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0037005 CG5078 [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
 Identities = 38/148 (25%), Positives = 64/148 (43%)

Query:   237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMM 296
             S P      +V F   L +AG   S+  YLK    F+  + + L+    I G IS  + +
Sbjct:   225 SDPNVLLLCVVMFTFLLPEAGEYSSVPAYLKLTMGFDFTELSTLVAFMAILG-ISINVTL 283

Query:   297 PVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQ 356
               +  T+G    +  GLL   + + L+++ +  W  + A   + LS  + P +   VS  
Sbjct:   284 GSIVKTLGAKNAIILGLLLELLQLILFAIGYEKWQMWLAGNVAALSSITFPAVSAYVSLY 343

Query:   357 VASNEQGKAQGCISGICSFANLVSPLAF 384
                  QG  QG I+G+    + + P  F
Sbjct:   344 TDVETQGAVQGMITGMSGLCSGLGPALF 371

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|A4IF94 HIATL1 "Hippocampus abundant transcript-like protein 1" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 69/261 (26%), Positives = 115/261 (44%)

Query:   128 AYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTS----AAFQAATAGSIISAVY 183
             AYVAD      R++ +G  S   + + V       ++S S         AT  +++   +
Sbjct:   150 AYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASYGDSLVVLVATVVALLDICF 209

Query:   184 MRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ 243
             + + +PES+ ++    P LS  A IS       K+   F  L  +       K S T   
Sbjct:   210 ILLAVPESLPEK--MRP-LSWGARIS------WKQADPFASLKKVG------KDS-TILL 253

Query:   244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV 303
               I  FLS L +AG   S   YL+    F   + A  + + GI   ++Q + +  L  ++
Sbjct:   254 ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAMVGILSIVAQTVFLTSLMRSL 313

Query:   304 GEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQG 363
             G    +  GL F    +  Y     +W+ +AA + + +S  + P + T+VS+   SN+QG
Sbjct:   314 GNKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGIVAAVSSITFPAVSTLVSQNADSNQQG 373

Query:   364 KAQGCISGICSFANLVSPLAF 384
              AQG I+GI    N + P  +
Sbjct:   374 VAQGIITGIRGLCNGLGPALY 394

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1PLI9 LOC476363 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 67/261 (25%), Positives = 115/261 (44%)

Query:   128 AYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTS----AAFQAATAGSIISAVY 183
             AYVAD      R++ +G  S   + + V       ++S S         AT  +++   +
Sbjct:   153 AYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASYGDSLVVLVATVVALLDICF 212

Query:   184 MRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ 243
             + + +PES+ ++    P LS  A+IS       K+   F  L  +       K S T   
Sbjct:   213 ILLAVPESLSEK--MRP-LSWGAKIS------WKQADPFASLKKVG------KDS-TVLL 256

Query:   244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV 303
               I  FLS L +AG   S   YL+    F   + A  + + GI   ++Q + + +L  ++
Sbjct:   257 ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMVGILSIVAQTVFLTILMRSL 316

Query:   304 GEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQG 363
             G    +  GL F    +  Y     +W+ +AA   + +S  + P +  +VS+   S++QG
Sbjct:   317 GNKNTVLLGLGFQIFQLAWYGFGSQAWMMWAAGTVAAMSSITFPAVSALVSRNAESDQQG 376

Query:   364 KAQGCISGICSFANLVSPLAF 384
              AQG I+GI    N + P  +
Sbjct:   377 VAQGIITGIRGLCNGLGPALY 397

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5SR56 HIATL1 "Hippocampus abundant transcript-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 5.1e-14, P = 5.1e-14
 Identities = 66/261 (25%), Positives = 115/261 (44%)

Query:   128 AYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTS----AAFQAATAGSIISAVY 183
             AYVAD      R++ +G  S   + + V       ++S S         AT  +++   +
Sbjct:   153 AYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASYGDSLVVLVATVVALLDICF 212

Query:   184 MRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ 243
             + + +PES+ ++    P+ S  A+IS       K+   F  L  +       K S T   
Sbjct:   213 ILVAVPESLPEK--MRPV-SWGAQIS------WKQADPFASLKKVG------KDS-TVLL 256

Query:   244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV 303
               I  FLS L +AG   S   YL+    F   + A  + + GI   ++Q   + +L  ++
Sbjct:   257 ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMVGILSIVAQTAFLSILMRSL 316

Query:   304 GEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQG 363
             G    +  GL F  + +  Y     +W+ +AA   + +S  + P +  +VS+   S++QG
Sbjct:   317 GNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAISALVSRNAESDQQG 376

Query:   364 KAQGCISGICSFANLVSPLAF 384
              AQG I+GI    N + P  +
Sbjct:   377 VAQGIITGIRGLCNGLGPALY 397

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|D4A4I2 D4A4I2 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 206 (77.6 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 68/262 (25%), Positives = 114/262 (43%)

Query:   128 AYVADNVPPGRRASVFGIFSGIVSGAFVC----GTISARFISTSAAFQAATAGSIISAVY 183
             AYVAD      R+  +G+ S   + + V     G    R    S     ATA +++   +
Sbjct:   144 AYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICF 203

Query:   184 MRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSI-DDMVHLLKSSPTFS 242
             + + +PES+ ++    P  S  A IS       K+   F  L  +  D + LL       
Sbjct:   204 ILVAVPESLPEK--MRPA-SWGAPIS------WKQADPFASLKKVGQDSIVLL------- 247

Query:   243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT 302
                I  FLS L +AG   S   YL+    F+    A  + + GI   I+Q I++ +L  +
Sbjct:   248 -ICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRS 306

Query:   303 VGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQ 362
             +G    +  GL F  + +  Y      W+ +AA   + +S  + P +  +VS+   +++Q
Sbjct:   307 IGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQ 366

Query:   363 GKAQGCISGICSFANLVSPLAF 384
             G  QG I+GI    N + P  +
Sbjct:   367 GVVQGMITGIRGLCNGLGPALY 388

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_V1924 hypothetical protein (447 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	396
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-14
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-12
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-06
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-05
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-05
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-04

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 77/379 (20%), Positives = 133/379 (35%), Gaps = 40/379 (10%)

Query: 10  LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVG 69
           LF+  F+     S++ PA+       +     E  L +           LG  +  PL G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLL-------TAFSLGYALAQPLAG 53

Query: 70  NLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAY 129
            LSD++GR+ +L + + L  + L +L ++ S    +   VLR L  +   G++   + A 
Sbjct: 54  RLSDRFGRRRVLLIGLLLFALGLLLLLFASS---LWLLLVLRVLQGL-GGGALFPAAAAL 109

Query: 130 VADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTS----AAFQAATAGSIISAVYMR 185
           +AD  PP  R    G+ S         G +    +++     AAF      ++++AV   
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAA 169

Query: 186 IFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAA 245
           + LP                       E    K       P +     LL+    +    
Sbjct: 170 LLLPRPPP-------------------ESKRPKPAEEAPAPLVPAWKLLLRDPVLW--LL 208

Query: 246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE 305
           +   L   A   L   +  Y +     +      L+ +AG+ G I +L++  +       
Sbjct: 209 LALLLFGFAFFALLTYLPLYQEV-LGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRR 267

Query: 306 ARLL---SFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQ 362
            RLL      +L       L     S W+  A  +    +    P L  +VS      E+
Sbjct: 268 RRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEER 327

Query: 363 GKAQGCISGICSFANLVSP 381
           G A G  +   S    + P
Sbjct: 328 GTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 63/347 (18%), Positives = 117/347 (33%), Gaps = 59/347 (17%)

Query: 55  AIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLT 114
           +   LG  +   L G LSD++GR+ +L + + L  +   +LA++ S    +   V R L 
Sbjct: 41  SAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASS---LWLLLVGRFLL 97

Query: 115 AMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTS----AAF 170
            +   G+++  + A +A+  PP  R    G+FS       + G +    ++ S      F
Sbjct: 98  GLGG-GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156

Query: 171 QAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDD 230
                  ++ A+ +   L                                          
Sbjct: 157 LILAILGLLLALLLLFLL------------------------------------------ 174

Query: 231 MVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTI 290
                         A+  FL +    GL   +  YL+     +  +   L+ + G+ G +
Sbjct: 175 --------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL 226

Query: 291 SQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVF-SILSVFSHPCL 349
             L+   +         LL  GLL   + + L ++A S  +   A +       F+ P L
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286

Query: 350 RTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFSSA 396
            T+ S+      +G A G  +   S    + PL    L     +   
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGV 333

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 12/143 (8%)

Query: 55  AIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLT 114
           A   LG L+  PL G L+D++GRK +L V + + ++  A+ A S +        + R L 
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQ 61

Query: 115 AMVCEGSIHCLS--LAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIST----SA 168
                G+   L    A +AD  PP  R    G+ S  ++   + G      ++      A
Sbjct: 62  GF---GAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 169 AFQAATAGSIISAVYMRIFLPES 191
            F      ++ + + +   LPE+
Sbjct: 119 PFLFLAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 8/131 (6%)

Query: 67  LVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLS 126
             G L+D+ GR+ +L   I L  +   + A + +        +LR L   +  G +    
Sbjct: 71  FFGPLADRIGRRRVLLWSILLFSVFTLLCALATN---VTQLLILRFLAG-LGLGGLMPNL 126

Query: 127 LAYVADNVPPGRRASVFGI-FSGIVSGAFVCGTISARFISTSA---AFQAATAGSIISAV 182
            A V++  P   R +  G+ F G   GA V G ++   I        F       ++  +
Sbjct: 127 NALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL 186

Query: 183 YMRIFLPESVR 193
            +  FLPES+ 
Sbjct: 187 LLMRFLPESID 197

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 73/367 (19%), Positives = 125/367 (34%), Gaps = 54/367 (14%)

Query: 67  LVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLS 126
             G L D++GRK  L +   L +I   +  +++ ++ FY   V R +  +   G I  L 
Sbjct: 65  FAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKS-FYMLIVGRVIVGLGV-GGISVLV 122

Query: 127 LAYVADNVPPGRRASVFGIF-SGIVSGAFVCGTISARFISTSAAFQ--AATAGSIISAVY 183
             Y+++  P   R ++  ++  GI  G  V   I       S +           + A+ 
Sbjct: 123 PMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAIL 182

Query: 184 M---RIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQ----VFKRLPSIDDMVHLLK 236
           +    +FLPES R        L  K ++    EE+   L     V      I +    L+
Sbjct: 183 LLIGLLFLPESPR-------WLVLKGKL----EEARAVLAKLRGVSDVDQEIQEEKDSLE 231

Query: 237 SSPTFSQAAIVAFLSNLAD-------AGLQG--------SMMYYLKAKFHFNKNQFADLM 281
            S    +A+ +                 LQ         ++ YY  +   F     +D +
Sbjct: 232 RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYY--SPTIFETLGLSDSL 289

Query: 282 VIAGIAGTISQLIMMPVLAPTV---GEARLLSFGLLFGCVHMFLYSVAW-----SSWVPY 333
           ++  I G ++  +   +    V   G   LL  G     +   +  VA      S     
Sbjct: 290 LVTIIVGVVNF-VFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGI 348

Query: 334 AAAVFSILSVF-----SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT 388
            A VF +L +        P    IVS+      + KA    +     AN +    F  +T
Sbjct: 349 VAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIIT 408

Query: 389 GDCRFSS 395
           G      
Sbjct: 409 GAIGGYV 415

Length = 449

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 8/153 (5%)

Query: 55  AIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLT 114
               LG  +  PL+  L+ +  R+ LL   + L I+   + A + S   F    + R L 
Sbjct: 55  TAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPS---FAVLLLARALA 111

Query: 115 AMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIST----SAAF 170
            +   G    ++ A  A  VPPG+R     +    ++ A V G     F+       A F
Sbjct: 112 GLAH-GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170

Query: 171 QAATAGSIISAVYMRIFLPESVRDEDLYTPILS 203
            A    ++++ + +   LP S     L  P+ +
Sbjct: 171 LAIAVLALLALLLLWKLLPPSEISGSLPGPLRT 203

Length = 394

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 14/145 (9%)

Query: 54  QAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTL 113
           Q+   +G L+   + G LSD++GRK +L +   ++ +   + A+S +   +  + V R L
Sbjct: 133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLL 189

Query: 114 TAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTIS----ARFISTSAA 169
             M   G I   ++    + +P  +RA + G    +    F  G +     A FI     
Sbjct: 190 VGMG-IGGIWVQAVVLNTEFLPKKQRA-IVGTLIQV---FFSLGLVLLPLVAYFIPDWRW 244

Query: 170 FQ-AATAGSIISAVYMRIFLPESVR 193
            Q A +  + +  +    F+PES R
Sbjct: 245 LQLAVSLPTFLFFLLS-WFVPESPR 268

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 45  LAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRK-ALLTVPITLSIIPLAILAYSRSRNF 103
           L+   +G   ++ GLG ++   L G LSD+ GR+  LL + + L+ + L +LA + S   
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267

Query: 104 FYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF 163
                +L         G      L   ++  PP  R +  G+F+   S     G + A  
Sbjct: 268 LLVALLL----LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL 323

Query: 164 ISTSAAFQAATAGSIISAV 182
           +  +  +          A+
Sbjct: 324 LLDTGGYGGVFLILAALAL 342

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	396
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK12382	392	putative transporter; Provisional	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK10054	395	putative transporter; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
PRK11043	401	putative transporter; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
KOG2615	451	consensus Permease of the major facilitator superf	99.98
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.98
KOG2532	466	consensus Permease of the major facilitator superf	99.98
PRK09528	420	lacY galactoside permease; Reviewed	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.97
PRK11902	402	ampG muropeptide transporter; Reviewed	99.96
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.96
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.95
KOG2533	495	consensus Permease of the major facilitator superf	99.95
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.95
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.95
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.95
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.94
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.93
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.93
PRK10429	473	melibiose:sodium symporter; Provisional	99.93
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.93
PRK09669	444	putative symporter YagG; Provisional	99.92
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.92
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.92
PF13347	428	MFS_2: MFS/sugar transport protein	99.92
PRK09848	448	glucuronide transporter; Provisional	99.91
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.9
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.9
PTZ00207	591	hypothetical protein; Provisional	99.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.88
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.88
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.87
PRK11462	460	putative transporter; Provisional	99.87
COG2211	467	MelB Na+/melibiose symporter and related transport	99.86
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.86
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.83
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.79
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.76
KOG3626	735	consensus Organic anion transporter [Secondary met	99.75
KOG2563	480	consensus Permease of the major facilitator superf	99.7
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.63
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.62
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.6
PRK09874	408	drug efflux system protein MdtG; Provisional	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.55
PRK09528	420	lacY galactoside permease; Reviewed	99.54
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.53
PRK10054	395	putative transporter; Provisional	99.5
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.5
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.49
PRK15011	393	sugar efflux transporter B; Provisional	99.49
PRK05122	399	major facilitator superfamily transporter; Provisi	99.46
PRK03893	496	putative sialic acid transporter; Provisional	99.45
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.45
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.45
PRK10489	417	enterobactin exporter EntS; Provisional	99.45
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.44
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.44
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.44
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.44
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.43
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.42
PRK03545	390	putative arabinose transporter; Provisional	99.4
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.4
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.39
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.39
PRK12382	392	putative transporter; Provisional	99.37
PRK09705	393	cynX putative cyanate transporter; Provisional	99.36
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.35
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.35
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.34
PRK11663	434	regulatory protein UhpC; Provisional	99.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.34
PRK03633	381	putative MFS family transporter protein; Provision	99.33
PRK03699	394	putative transporter; Provisional	99.33
PRK10504	471	putative transporter; Provisional	99.32
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.32
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.31
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.31
TIGR00900	365	2A0121 H+ Antiporter protein.	99.31
KOG0637	498	consensus Sucrose transporter and related proteins	99.31
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.31
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.3
TIGR00893	399	2A0114 d-galactonate transporter.	99.3
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.29
PRK09952	438	shikimate transporter; Provisional	99.29
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.28
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.28
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.28
TIGR00891	405	2A0112 putative sialic acid transporter.	99.28
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.26
TIGR00895	398	2A0115 benzoate transport.	99.26
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.26
PRK10091	382	MFS transport protein AraJ; Provisional	99.25
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.24
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.24
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.24
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.23
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.22
PLN00028	476	nitrate transmembrane transporter; Provisional	99.22
PRK11010	491	ampG muropeptide transporter; Validated	99.22
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.22
PRK11043	401	putative transporter; Provisional	99.21
PRK12307	426	putative sialic acid transporter; Provisional	99.21
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.2
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.2
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.2
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.19
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.19
TIGR00898	505	2A0119 cation transport protein.	99.18
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.17
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.17
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.16
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.16
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.16
PRK10133	438	L-fucose transporter; Provisional	99.15
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.15
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.14
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.14
KOG3762	618	consensus Predicted transporter [General function	99.13
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.12
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.11
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.11
PRK09848	448	glucuronide transporter; Provisional	99.09
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.08
PRK15075	434	citrate-proton symporter; Provisional	99.08
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.07
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.06
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.06
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.05
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.04
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.02
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.01
TIGR00901	356	2A0125 AmpG-related permease.	99.01
PRK10429	473	melibiose:sodium symporter; Provisional	99.01
PRK11902	402	ampG muropeptide transporter; Reviewed	99.01
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.98
KOG2615	451	consensus Permease of the major facilitator superf	98.97
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.93
KOG0569	485	consensus Permease of the major facilitator superf	98.93
PF13347	428	MFS_2: MFS/sugar transport protein	98.92
PTZ00207	591	hypothetical protein; Provisional	98.92
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.91
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.91
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.91
TIGR00805	633	oat sodium-independent organic anion transporter.	98.9
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.9
PRK09669	444	putative symporter YagG; Provisional	98.9
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.89
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.88
COG0477	338	ProP Permeases of the major facilitator superfamil	98.88
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.85
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.8
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.76
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.75
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.75
COG2211	467	MelB Na+/melibiose symporter and related transport	98.7
PRK11462	460	putative transporter; Provisional	98.66
KOG3762	618	consensus Predicted transporter [General function	98.65
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.63
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.63
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.59
KOG0254	513	consensus Predicted transporter (major facilitator	98.58
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.56
PF12832	77	MFS_1_like: MFS_1 like family	98.51
KOG3810	433	consensus Micronutrient transporters (folate trans	98.49
KOG2532	466	consensus Permease of the major facilitator superf	98.47
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.45
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.42
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.37
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.37
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.32
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.24
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.21
KOG3880	409	consensus Predicted small molecule transporter inv	98.18
PF12832	77	MFS_1_like: MFS_1 like family	98.13
COG3202	509	ATP/ADP translocase [Energy production and convers	98.11
KOG2533	495	consensus Permease of the major facilitator superf	98.06
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.04
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.97
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.95
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.94
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.91
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.9
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.89
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.75
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.73
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.66
KOG2563	480	consensus Permease of the major facilitator superf	97.57
COG0477	338	ProP Permeases of the major facilitator superfamil	97.44
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.18
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.16
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.16
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.04
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.01
KOG0637	498	consensus Sucrose transporter and related proteins	97.01
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.4
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.38
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.29
PRK03612	521	spermidine synthase; Provisional	96.26
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.18
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.73
PRK03612	521	spermidine synthase; Provisional	95.51
KOG3626	735	consensus Organic anion transporter [Secondary met	95.21
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	94.29
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	93.67
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.54
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.72
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.46
KOG3097	390	consensus Predicted membrane protein [Function unk	92.31
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	92.18
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	89.72
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	88.22
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	87.84
KOG2881	294	consensus Predicted membrane protein [Function unk	84.38
KOG3880	409	consensus Predicted small molecule transporter inv	84.24
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	82.72

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.5e-37  Score=271.66  Aligned_cols=344  Identities=18%  Similarity=0.197  Sum_probs=293.2

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      .++.+.++.|.......+..+.+|++        .+|++.|..+.|+..++|.++..+++|+...+.||+.||++++...
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~i--------A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l   85 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPI--------AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL   85 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHH--------HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence            45567888889999999999999999        5567888899999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH--
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF--  163 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~--  163 (396)
                      .++.++.+++++++|   |+.++++|++.|+ +.|.+++...++..|..|+++|++++++...+.+++.++|.+++.+  
T Consensus        86 ~lFi~~n~l~alAp~---f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig  161 (394)
T COG2814          86 ALFIVSNLLSALAPS---FAVLLLARALAGL-AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG  161 (394)
T ss_pred             HHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999   9999999999999 9999999999999999999999999999999999999888776665  


Q ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhH
Q 016048          164 --ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTF  241 (396)
Q Consensus       164 --~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (396)
                        +|||..|+..++++++..+..+..+|  |++.+                         ++++.+.++.++.+ ++|.+
T Consensus       162 ~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~-------------------------~~~~~~~~~~~~~l-~~p~v  213 (394)
T COG2814         162 QLFGWRATFLAIAVLALLALLLLWKLLP--PSEIS-------------------------GSLPGPLRTLLRLL-RRPGV  213 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCC-------------------------CCCCcchhHHHHHh-cCchH
Confidence              48999999999999999999989999  22211                         11112344445445 57888


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHH
Q 016048          242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF  321 (396)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~  321 (396)
                      +...+..++....++..++|+.+++++..|++.+..++.+..++++.++++ .++|++.|| +.|+.+.....+..+.++
T Consensus       214 ~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l~a~~~l  291 (394)
T COG2814         214 LLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPRRALIAALLLLALALL  291 (394)
T ss_pred             HHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHHHHHHHH
Confidence            888888888888999999999999999999999999999999999999999 888999999 888888888888888877


Q ss_pred             HHHHhhhhhHHH-H-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          322 LYSVAWSSWVPY-A-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       322 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .+.+..+..... . ..+.++..............+ .-||.++.+.+++....++|..+|..++|.++|+++
T Consensus       292 ~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g  363 (394)
T COG2814         292 ALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG  363 (394)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            777665544322 2 233444455555555556666 335899999999999999999999999999999854

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=5.2e-38  Score=289.99  Aligned_cols=372  Identities=13%  Similarity=0.081  Sum_probs=273.0

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +.+..+++..++++++........|.+        ++|++.+..+.|++.+++.+++.+++++.|+++||+|||+++..+
T Consensus         8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l--------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~   79 (412)
T TIGR02332         8 RLIIFLFILFIFSFLDRINIGFAGLTM--------GKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGI   79 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHhh--------HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHH
Confidence            344455666777788888887777766        557788899999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      .++.+++.++++++++   ++.+++.|+++|+ +.+...+....++.|++|+++|++++++++...++|..+++.+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332        80 MVLWGIASTATMFATG---PESLYLLRILVGI-AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999   9999999999999 88988899999999999999999999999999999999999888653


Q ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhh-hh---hh-h-hhhhhhhhccCCCh
Q 016048          165 ----------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEIS-AS---CE-E-STKKLQVFKRLPSI  228 (396)
Q Consensus       165 ----------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~-~~---~~-~-~~~~~~~~~~~~~~  228 (396)
                                +||+.|++.++..++..++.++++||+|++.+.   +.+.+++.. +.   ++ + ++.+++.++++...
T Consensus       156 ~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (412)
T TIGR02332       156 LALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKW---LDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQ  232 (412)
T ss_pred             HhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCC---CCHHHHHHHHHHHHhccccccccccccccccccH
Confidence                      899999999888887777777888998764220   000000000 00   00 0 00000000111112


Q ss_pred             hHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhh-ccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchh
Q 016048          229 DDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK-FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR  307 (396)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  307 (396)
                      ++.++.++ ++.++...+..++....++.+.+++|.|+++. .++++.+.+.......+...++. ++.++++||+++|+
T Consensus       233 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~-l~~g~l~dr~~~r~  310 (412)
T TIGR02332       233 RSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGM-IWWSRHSDRLKERK  310 (412)
T ss_pred             HHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHH-HHHHHHhcccCccH
Confidence            22233333 46677777777777778888899999999873 46788888889999999999999 77789999998776


Q ss_pred             H-HHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhh
Q 016048          308 L-LSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFS  385 (396)
Q Consensus       308 ~-~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g  385 (396)
                      . .........+++.+.....+...... ....+.+.....+.......|.+|+++|+++.|+.+...++|++++|.+.|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g  390 (412)
T TIGR02332       311 HHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG  390 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            4 33344444444322222222221111 112222222233444455567899999999999999999999999999999


Q ss_pred             hhhhcccC
Q 016048          386 PLTGDCRF  393 (396)
Q Consensus       386 ~l~~~~~~  393 (396)
                      .+.|..++
T Consensus       391 ~i~~~~g~  398 (412)
T TIGR02332       391 ILKDATGS  398 (412)
T ss_pred             cccccCCC
Confidence            99997653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.4e-36  Score=279.44  Aligned_cols=339  Identities=17%  Similarity=0.192  Sum_probs=262.4

Q ss_pred             HHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhH
Q 016048           10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSI   89 (396)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~   89 (396)
                      +.+..++.........+.+|.+        .++++.+..+.|+..+.+.+++.+++++.|+++||+|||+++..+.++.+
T Consensus        14 l~~~~~~~~~~~~~~~~~~~~l--------~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545         14 LALAAFIFNTTEFVPVGLLSDI--------AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             HHHHHHHHHhHHHHHHcchHHH--------HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            3444444444444555667777        45678888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----h
Q 016048           90 IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----S  165 (396)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~  165 (396)
                      ++.++++++++   ++.++++|+++|+ +.+...+...+++.|++|+|+|++++++...+.++|..+||.+++.+    +
T Consensus        86 ~~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g  161 (390)
T PRK03545         86 ASHVLSALAWN---FTVLLISRIGIAF-AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG  161 (390)
T ss_pred             HHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            99999999999   9999999999999 88888899999999999999999999999999999999999888654    8


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHH
Q 016048          166 TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAA  245 (396)
Q Consensus       166 ~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (396)
                      ||+.|++.+++.++..+..+..+||++++++                             .+.++..+.+ ++|.++...
T Consensus       162 w~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~-~~~~~~~~~  211 (390)
T PRK03545        162 WRTTFLAIGGGALITLLLLIKLLPLLPSEHS-----------------------------GSLKSLPLLF-RRPALVSLY  211 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc-----------------------------chHHHHHHHH-hCcHHHHHH
Confidence            9999999998887776666566676533211                             0111112222 566666555


Q ss_pred             HHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH-H
Q 016048          246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY-S  324 (396)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~-~  324 (396)
                      ...++..........+.+.|+++..|.++.+.+......+++.++++ +..+++.||+++|+... +..+..++...+ .
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~  289 (390)
T PRK03545        212 LLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGS-VLFSRLGNRHPSGFLLI-AIALLLVCLLLLLP  289 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHHH-HHHHHHHHHHHHHH
Confidence            55555555555566788888888889999999999999999999999 77789999999876544 444444443333 3


Q ss_pred             HhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          325 VAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       325 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      ...+.+.... ..+.+++.....+.....+.|..| ++|++++|+.+...++|..+||.+.|.+.|+..-
T Consensus       290 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~  358 (390)
T PRK03545        290 AANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGL  358 (390)
T ss_pred             HhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            3333333333 445566666666777788888876 6889999999999999999999999999998643

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=5.8e-37  Score=279.69  Aligned_cols=350  Identities=15%  Similarity=0.173  Sum_probs=279.3

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      +.++...++..++.++..+.+|.+..+        .+.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus         2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~   73 (365)
T TIGR00900         2 RLLFAAQLISLIGTAITQVALPLYVLA--------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLI   73 (365)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHH
Confidence            346778889999999999999998554        466778999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcc-----CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           88 SIIPLAILAYSR-----SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        88 ~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                      ..++..+..+.+     +   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+||.+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~  149 (365)
T TIGR00900        74 RAVLVAVLPFVALLGGLN---IWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG  149 (365)
T ss_pred             HHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            888888887776     6   8999999999999 889999999999999999999999999999999999999999887


Q ss_pred             Hh----hhHHHHHHHHHHHHHHHHHHHHh-cCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcC
Q 016048          163 FI----STSAAFQAATAGSIISAVYMRIF-LPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKS  237 (396)
Q Consensus       163 ~~----~~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (396)
                      .+    +||+.|++.++..++..+..+.. .||+++++++ + .         +  + +..   +    +.++..+.+++
T Consensus       150 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---------~--~-~~~---~----~~~~~~~~~~~  208 (365)
T TIGR00900       150 LMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQ-A-L---------S--N-AVL---R----DTREGIKFVLK  208 (365)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcccc-c-c---------c--h-hHH---H----HHHhHHHHHHc
Confidence            65    89999988877666554443222 2222211110 0 0         0  0 000   0    01111223346


Q ss_pred             ChhHHHHHHHHHHHHHhhhhhh-hhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQ-GSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG  316 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  316 (396)
                      +|.++......++......... .+.|.|.++.+|.++.+.+.......++.+++. +..+++.||.+||+.+..+..+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~  287 (365)
T TIGR00900       209 NPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGA-LLLGLLGRYFKRMALMTGAIFVI  287 (365)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchhHHHHHHHHHH
Confidence            7777777777666666665555 778888888789999999999999999999999 66789999999999988887777


Q ss_pred             HHHHHHHHHhhh-hhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          317 CVHMFLYSVAWS-SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       317 ~i~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      +++...+....+ .+.... .++.+++.+...+...++..|.+|+++|+++.|+.+...+++..++|.+.|.+.|+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       288 GLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            777777766553 333333 455677788888999999999999999999999999999999999999999999875

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=4.8e-36  Score=283.30  Aligned_cols=371  Identities=12%  Similarity=0.097  Sum_probs=292.7

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      .+..+++..++..++..++...+|.+        .+|++.+..+.+|+.+.+.++...+++++|+++||+|||++++.+.
T Consensus         7 ~~~~~~~~~~~~~ld~tiv~~a~p~i--------~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~   78 (495)
T PRK14995          7 TLVIIVLVYIPVAIDATVLHVAAPTL--------SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            45567888999999999999999999        4456777788999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCC-CcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV-PPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      +++.++.++++++++   ++.++++|+++|+ +.+...+.....+.+.+ |+++|++++++......+|..+||.+++.+
T Consensus        79 ~~~~~~~~~~~~a~~---~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l  154 (495)
T PRK14995         79 TLFGLASLAAAFSPT---ASWLIATRALLAI-GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL  154 (495)
T ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999   9999999999999 88888888888776665 789999999999999999999999999876


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc-ccccccc------------hhhhhhhhhhh------------
Q 016048          165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDL-YTPILSS------------KAEISASCEES------------  215 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~l~~~------------~~~~~~~~~~~------------  215 (396)
                          +||+.|++...+.++..++..+.+||+++++++ .|.....            ..+..+.....            
T Consensus       155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (495)
T PRK14995        155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGAL  234 (495)
T ss_pred             hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence                899999999888887777777788886543221 1111100            00000000000            


Q ss_pred             ---hhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHH
Q 016048          216 ---TKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQ  292 (396)
Q Consensus       216 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  292 (396)
                         .-...+.+.+++..+ ++.+ ++|.+....+..++......+...++|.|+++.+|+++.+++.......+...++.
T Consensus       235 ~l~~f~~~e~~~~~p~~~-~~lf-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~  312 (495)
T PRK14995        235 LLGLFIRTQLAASRPMID-MRLF-THRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSG  312 (495)
T ss_pred             HHHHHHHHHhcCCCCCcC-HHHh-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence               000011112223322 2223 56777777777777777777778889999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh---hhhHHH-HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhh
Q 016048          293 LIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW---SSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC  368 (396)
Q Consensus       293 ~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  368 (396)
                       ++.|++.||+|+|+.+..+..+..++...+....   +.+..+ ..++.+++.+...+.......+..|+++++.+.++
T Consensus       313 -~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~  391 (495)
T PRK14995        313 -PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI  391 (495)
T ss_pred             -HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence             7778999999999998888888877776655432   233223 35566888888888888889999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcc
Q 016048          369 ISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       369 ~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .++.+++|+.+|+.+.|.++++.
T Consensus       392 ~~~~~~lG~~~G~ai~g~i~~~~  414 (495)
T PRK14995        392 ETMAYELGAGLGIAIFGLLLSRS  414 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998864

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=6.1e-36  Score=276.93  Aligned_cols=370  Identities=15%  Similarity=0.185  Sum_probs=268.7

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      +...++..+.+.++.....+..|.+        +++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEV--------AGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            4456788888888888898888887        44567788899999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh--
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--  164 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--  164 (396)
                      +.+++.++++++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+  
T Consensus        86 ~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        86 LFSAGTLACGFAPG---YITMFIARLVIGI-GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             HHHHHHHHHHHhcc---HHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998   9999999999999 88999999999999999999999999999999999999999887754  


Q ss_pred             --h--hHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCC-h
Q 016048          165 --S--TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS-P  239 (396)
Q Consensus       165 --~--~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  239 (396)
                        +  ||+.|++.++..++. ++....+||+++.+++++..++..++.++..+..+..+  ...+.......+..+++ +
T Consensus       162 ~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  238 (405)
T TIGR00891       162 VWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIA--NIVMTLAAAMVQSAGKRWP  238 (405)
T ss_pred             hcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhh--hhhhhhhHHhhhhhhhhhH
Confidence              4  999998766555443 33446678765432211100000000000000000000  00000001111111111 1


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHH
Q 016048          240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH  319 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~  319 (396)
                      .+...................++|.|+.+.+|+++.+.+.......++.+++. ++.+++.||++||+.+..+.....+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~~~~~~~~  317 (405)
T TIGR00891       239 TFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGG-CVFGFLGDWLGRRKAYVCSLLAGQLL  317 (405)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchhhhHHHHHHHHHH
Confidence            12222333333344445566788999988889999999999999999999999 77789999999999888777665333


Q ss_pred             HH-HHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          320 MF-LYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       320 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .. .+....+.+.... ..+.+.......+....+++|.+|+++|++++|+.+...++|..++|.+.|.+.|+.+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       318 IIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            32 2222223333222 2444555566677788899999999999999999999999999999999999999865

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=6.7e-36  Score=276.63  Aligned_cols=349  Identities=16%  Similarity=0.130  Sum_probs=272.1

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHh
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS   88 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~   88 (396)
                      ..+...+++.++.....+..|.+        .++++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (406)
T PRK11551         19 LCFLVALLEGLDLQSAGVAAPRM--------AQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF   90 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            34566777777777778888877        3356778889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----
Q 016048           89 IIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----  164 (396)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----  164 (396)
                      .++.+++.++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+....+|..+++.++..+    
T Consensus        91 ~~~~~~~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  166 (406)
T PRK11551         91 GLFSLATAQAWD---FPSLLVARLLTGV-GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA  166 (406)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            999999999988   9999999999999 88888899999999999999999999999999999999999888654    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHH
Q 016048          165 STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQA  244 (396)
Q Consensus       165 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (396)
                      +||+.|++.+++.++..+....++||+++++++++.         ++           +++...++.++.. +.+.....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~-----------~~~~~~~~~~~~~-~~~~~~~~  225 (406)
T PRK11551        167 AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA---------GK-----------QRAPVLRALFGEG-RATATLLL  225 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc---------ch-----------hhhhhHHHHhhhh-hhhHHHHH
Confidence            799999988877776666666778887653321000         00           0000011111000 11222333


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 016048          245 AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS  324 (396)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  324 (396)
                      ....++.....+....+.|.|+++ .|+++.+.+......+++.+++. +..+++.||+++|+.+..+.....++.+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  303 (406)
T PRK11551        226 WISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGS-LLIGALMDRLRPRRVVLLIYAGILASLAALA  303 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            333444444556667788999877 59999999999999999999999 7778999999999998887777766666665


Q ss_pred             HhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          325 VAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       325 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ..++.+.... .++.+++.....+...++..|.+|+++|+++.|+.+....+|..++|.+.|.+.++..
T Consensus       304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  372 (406)
T PRK11551        304 AAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR  372 (406)
T ss_pred             hcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC
Confidence            5554443333 4445666667788889999999999999999999999999999999999999998643

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=4.1e-36  Score=277.09  Aligned_cols=359  Identities=17%  Similarity=0.181  Sum_probs=266.7

Q ss_pred             HHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHH
Q 016048           16 VHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAIL   95 (396)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~   95 (396)
                      +..++.....+..|.+        .++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++..++
T Consensus         5 ~~~~~~~~~~~~~~~~--------~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   76 (399)
T TIGR00893         5 INYLDRANLSFAAPML--------QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ   76 (399)
T ss_pred             HHHHHHHhhhHhHHHH--------HHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH
Confidence            4445555666666665        44567788899999999999999999999999999999999999999999999999


Q ss_pred             HhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHH
Q 016048           96 AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQ  171 (396)
Q Consensus        96 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~  171 (396)
                      +++++   ++.++++|++.|+ +.+...+....++.|++|+|+|++.+++.+...++|.+++|.+++.+    +||+.|+
T Consensus        77 ~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  152 (399)
T TIGR00893        77 AFAGA---YVSLYILRVLLGA-AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFI  152 (399)
T ss_pred             HHHcC---HHHHHHHHHHHHH-HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHH
Confidence            99998   9999999999999 88999999999999999999999999999999999999999988864    8999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHH
Q 016048          172 AATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLS  251 (396)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (396)
                      +.+++.++..+...+..||++++++..+..++.. ..+...++.+++++.++++.+.++    ..++|.++...+..++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  227 (399)
T TIGR00893       153 IEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYI-VVGGLLAEQQGKGPSTPKKYQIKE----LLKDRRVWGLALGQFLV  227 (399)
T ss_pred             HHHHHHHHHHHHhhheecCCCCccccCCHHHHhh-cchhhccccccccccCCCccchHH----HhcCHHHHHHHHHHHHH
Confidence            9888887777766666777654332111000000 000000000000111111112222    23577888888888888


Q ss_pred             HHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchh--HHHHHHHHHH----HHHHHHHH
Q 016048          252 NLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR--LLSFGLLFGC----VHMFLYSV  325 (396)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~~~~~~~~~----i~~~~~~~  325 (396)
                      .........+.|.|+++.+|.++.+.+.......+..+++. ++.+++.||++||+  ..........    .+......
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (399)
T TIGR00893       228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGM-ILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT  306 (399)
T ss_pred             HhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence            88888888999999999889999999999999999999999 77789999999886  1111111111    11111111


Q ss_pred             --hhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          326 --AWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       326 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                        ....+.......++.+.....+...++..|.+|+++|++++|+.+...++|+.++|.+.|.+.|..+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       307 NYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             ccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence              1122222223333333334688999999999999999999999999999999999999999998764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=6e-36  Score=270.79  Aligned_cols=329  Identities=13%  Similarity=0.049  Sum_probs=245.1

Q ss_pred             HHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHH
Q 016048           17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA   96 (396)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~   96 (396)
                      +...+..+.|.+|.+        ++|++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.....
T Consensus         3 ~~~~~~~~~~~lp~i--------~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~   74 (368)
T TIGR00903         3 SQAIWVTFSPVLSLV--------AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL   74 (368)
T ss_pred             hhHHHHHHHhhHHHH--------HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            445566778888888        556788889999999999999999999999999999999987766555555443333


Q ss_pred             hccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHH
Q 016048           97 YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQA  172 (396)
Q Consensus        97 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~  172 (396)
                      ..++   ++.++++|+++|+ +.+. .+.....++|++|+|+|++++++.+.+..+|.+++++++..+    +||+.|++
T Consensus        75 ~~~~---~~~l~~~R~l~G~-g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~  149 (368)
T TIGR00903        75 DPFN---YEWLLACQLLAAL-GQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP  149 (368)
T ss_pred             Hhcc---HHHHHHHHHHHHh-HhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            3367   9999999999999 8775 456666779999999999999999999999999998888776    99999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHH
Q 016048          173 ATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSN  252 (396)
Q Consensus       173 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (396)
                      .++++++..++.++.+||+|++++++.           +     .++. .   +++++.+    ++|.++...+..++..
T Consensus       150 ~~~l~~~~~~~~~~~lp~~p~~~~~~~-----------~-----~~~~-~---~~~~~ll----~~~~~~~~~~~~~~~~  205 (368)
T TIGR00903       150 IAAVAAAGIILVLAALPALPFQAAEGF-----------G-----FKDA-V---KEFGALA----GRKDLWIIGAILGFGV  205 (368)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCc-----------c-----hHHH-H---HHHHHHH----cChhHHHHHHHHHHHH
Confidence            999888887778888999875432100           0     0000 0   0133332    6788888888899999


Q ss_pred             HhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcc---hhH-HHHHHHHHHHHHHHHHHhhh
Q 016048          253 LADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE---ARL-LSFGLLFGCVHMFLYSVAWS  328 (396)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~---~~~-~~~~~~~~~i~~~~~~~~~~  328 (396)
                      ..++++.+|+|.|+++ .|++.. .+.......+.+.++.    +++.||..|   |+. ......+.++....+....+
T Consensus       206 ~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g~----~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~  279 (368)
T TIGR00903       206 ALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIGV----AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN  279 (368)
T ss_pred             HHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHHH----HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999976 478764 5666666666555554    567777643   333 22233444444444444333


Q ss_pred             hhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          329 SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  388 (396)
                      ...... ..+.+++.....+..+++.+|.+|++.||++.|+.+..+++++..+|.+.+.+.
T Consensus       280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       280 RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            332222 333345556666778899999999999999999999999999999999998777

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.9e-35  Score=275.18  Aligned_cols=364  Identities=11%  Similarity=0.052  Sum_probs=262.3

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHh
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS   88 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~   88 (396)
                      ..++..+...+......+.+|.+        .++++.+..+.|++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         27 TMYLGYALFYFTRKSFNAAMPEM--------LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHhhhhHHHhhHHH--------HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            34555666666666677778877        4456788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----
Q 016048           89 IIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----  164 (396)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----  164 (396)
                      +++.++.+++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..++|.+++.+    
T Consensus        99 ~~~~~~~~~~~~---~~~l~~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  174 (434)
T PRK11663         99 GIINILFGFSSS---LWAFALLWVLNAF-FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY  174 (434)
T ss_pred             HHHHHHHHHHhH---HHHHHHHHHHHHH-HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999998   9999999999998 88888889999999999999999999999999999999999887764    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhh-hhcCChhHHH
Q 016048          165 STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH-LLKSSPTFSQ  243 (396)
Q Consensus       165 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  243 (396)
                      +||+.|++.+++.++..+...+.+||+|++...++. ++.+++.   .+   ..++.++++.+.++.++ ...+++.++.
T Consensus       175 gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (434)
T PRK11663        175 GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSV-GEWRHDA---LE---LAQQQEGAGLSRKEILTKYVLLNPYIWL  247 (434)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCc-ccccccc---cc---cchhccccCCChhhhHHHHHhcChHHHH
Confidence            899999998887776666566677887643211100 0000000   00   00000111123333332 2335677777


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhh--cchhHH-HHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV--GEARLL-SFGLLFGCVHM  320 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~-~~~~~~~~i~~  320 (396)
                      ..+..++....+.....++|.|+.+.+|++..+.+...+...++..++. ++.+++.||+  ++|+.. ........+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~  326 (434)
T PRK11663        248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA-LVAGWGSDKLFNGNRGPMNLIFAAGILLSV  326 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHhhhHHHhccCCccHHHHHHHHHHHHHH
Confidence            7777777777777788899999988889999999999999999999999 7778999998  333222 22111111111


Q ss_pred             HHHHH--hhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          321 FLYSV--AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       321 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ..+..  ..+...... .+.++++.............|..|+++||++.|+.+...++|..++|.+.|++.|+.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g  401 (434)
T PRK11663        327 GSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH  401 (434)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc
Confidence            11111  111111111 2222222222222344567899999999999999999999999999999999999754

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=8.5e-35  Score=267.24  Aligned_cols=326  Identities=12%  Similarity=0.078  Sum_probs=253.7

Q ss_pred             cccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCc
Q 016048           22 SMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSR  101 (396)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~  101 (396)
                      ....|.+|.+        ++|++.|..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.++++++++ 
T Consensus        26 ~~~~~~lp~i--------~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~-   96 (393)
T PRK09705         26 TSVGPLLPQL--------RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ-   96 (393)
T ss_pred             hccchhHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc-
Confidence            5667888888        5567888999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHHH
Q 016048          102 NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATAG  176 (396)
Q Consensus       102 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-----~~~~~f~~~~~~  176 (396)
                        ++.++++|+++|+ +.+...+....++.|++| ++|+++++.+..+...|..+|+.++..+     +||+.+...++.
T Consensus        97 --~~~ll~~r~l~Gi-g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705         97 --SALLLSSALLGGV-GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             --hHHHHHHHHHHHh-HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence              9999999999999 888888899999999997 8899999999988878877777766653     799887766555


Q ss_pred             HHHHHHHHHHhcCC-CCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhh
Q 016048          177 SIISAVYMRIFLPE-SVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLAD  255 (396)
Q Consensus       177 ~~~~~~~~~~~~~e-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (396)
                      .++..+ .++...+ .|++++                         +++ .+.++   .+ ++++.+...+..++....+
T Consensus       173 ~~~~~~-~~~~~~~~~~~~~~-------------------------~~~-~~~~~---~l-~~~~~~~l~~~~~~~~~~~  221 (393)
T PRK09705        173 AVVALF-AWWWQSAREVASSH-------------------------KTT-TTPVR---VV-FTPRAWTLGVYFGLINGGY  221 (393)
T ss_pred             HHHHHH-HHHHHhcCCCcccc-------------------------CCC-cCCcc---cc-cCHhHHHHHHHHHHHHHHH
Confidence            443332 2222222 111100                         000 01111   12 3455666666666666777


Q ss_pred             hhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 016048          256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAA  335 (396)
Q Consensus       256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  335 (396)
                      .....++|.|+++ +|++..+.+...+..+++.++++ +..+++.||++||+....+..+..++...+...+........
T Consensus       222 ~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~-~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  299 (393)
T PRK09705        222 ASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGA-LLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWA  299 (393)
T ss_pred             HHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            7888899999987 69999999999999999999999 777899999999999888887777776655433322222223


Q ss_pred             HHHHHhhhhhhhhhhHHHhhccC-CccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          336 AVFSILSVFSHPCLRTIVSKQVA-SNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      .+.+++.+...|.......+..+ ++++|+.+|+.+...+++..++|.+.|++.|+.++
T Consensus       300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~  358 (393)
T PRK09705        300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN  358 (393)
T ss_pred             HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            44566677777777777677774 57899999999999999999999999999998654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=2e-35  Score=277.63  Aligned_cols=361  Identities=13%  Similarity=0.069  Sum_probs=262.5

Q ss_pred             HHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhH
Q 016048           10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSI   89 (396)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~   89 (396)
                      +++..++.+++.....+..|.+        .+|++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus        34 ~~~~~~~~y~~r~~~~~~~~~i--------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~  105 (467)
T PRK09556         34 VFIGYLTMYLIRKNFKAAQNDM--------ISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSA  105 (467)
T ss_pred             HHHHHHHHHHHhcChhhhhHHH--------HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHH
Confidence            3444555566677777888877        45678888999999999999999999999999999999999998888887


Q ss_pred             HHHHHHHh-----ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           90 IPLAILAY-----SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        90 ~~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      +.....++     +++   ++.+++.|+++|+ +.+...|...++++|++|+++|++++++.+.+.++|.++++.+....
T Consensus       106 ~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        106 ICMLGFGASLGSGSVS---LGLMIALWALSGF-FQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HHHHHHHHHHhcccch---HHHHHHHHHHHHH-HHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            77766654     567   9999999999999 88888899999999999999999999999999999999998876532


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHH-hhhhc
Q 016048          165 -------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDM-VHLLK  236 (396)
Q Consensus       165 -------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  236 (396)
                             +||..|.+.+++.++..++.+++.+|+|++.+..+.    ++. .++... .++++.++++.+.++. .+...
T Consensus       182 ~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~----~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  255 (467)
T PRK09556        182 ANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA----EEI-FGEPIS-EEDKETESTDMTKWQIFVEYVL  255 (467)
T ss_pred             HHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh----hhc-ccCccc-hhhhccccccCcHHHHHHHHHH
Confidence                   488888888888777766666667776543221000    000 000000 0000000111122222 22234


Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG  316 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  316 (396)
                      ++|.++...+..++......+...++|.|+++.+|++..+.+...+...++..++. ++.|+++||+++|+.........
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~g~r~~~~~~~~~~  334 (467)
T PRK09556        256 KNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGS-LLWGWLSDLANGRRALVACIALA  334 (467)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCchHHHHHHHH
Confidence            67888888888888887778888999999999899999999999998999999999 78899999999988766554443


Q ss_pred             HHHHHHHH--HhhhhhHH-HHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHH-HHHhhhhhhhhhhh
Q 016048          317 CVHMFLYS--VAWSSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSPLTG  389 (396)
Q Consensus       317 ~i~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~  389 (396)
                      .++...+.  ...+.... ...++++.+.............|.+|++++|++.|+.+...++ |..++|.+.|.+.|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        335 LIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            33322222  22222222 2223334322222223346677999999999999999999996 77999999999999

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-35  Score=257.78  Aligned_cols=364  Identities=15%  Similarity=0.147  Sum_probs=287.3

Q ss_pred             hHHHHHHHHHHhhcc----ccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH
Q 016048            8 SHLFITIFVHCFSTS----MVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      +.+++..++.+.++.    ...-..|.+        .+|.++|..|.|++.+.+++.+.++-.+.|.++||.+.|+.+..
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l--------~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPAL--------IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHH--------HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            344555555555544    444555555        44556888999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHH--
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA--  161 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--  161 (396)
                      +++++++..++++++++   ++.+.++-+++|+ .+|.-+|.+...++.|+|++|||+..++.+.+.++|..+.|++.  
T Consensus       100 gLilsai~nil~Gfs~s---~~~~~~l~~lng~-fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l  175 (448)
T COG2271         100 GLILSAIVNILFGFSPS---LFLFAVLWVLNGW-FQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL  175 (448)
T ss_pred             HHHHHHHHHHHHhhhhH---HHHHHHHHHHHHH-HhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH
Confidence            99999999999999998   9999999999999 99999999999999999999999999999999999999888877  


Q ss_pred             HHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhcc-CCChhHHhhhhc
Q 016048          162 RFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKR-LPSIDDMVHLLK  236 (396)
Q Consensus       162 ~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  236 (396)
                      +++    +||..|++.++++++..++.++..+|+|++..-.+. ++.++|     ..+.++++++++ ...++...+.+.
T Consensus       176 a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i-e~~~~d-----~~e~~~~~~~~~~ls~~~i~~~YVL  249 (448)
T COG2271         176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI-EEYRGD-----PLEIYEEEKENEGLTAWQIFVKYVL  249 (448)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH-HHhhcC-----chhhhhhhccCCCccHHHHHHHHHH
Confidence            554    799999999999999999998999999875431110 000000     000001111111 223445566677


Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhh--cchhHH-HHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV--GEARLL-SFGL  313 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~-~~~~  313 (396)
                      +||.+|.++++.++....-++++.|.|.|+.|..|+|..+++...+.+-.++++++ ++.|+++||+  |||... .+..
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~-Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGT-LLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHHhcccccchHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999 7889999996  555544 3444


Q ss_pred             HHHHHHHHHHHHhhhh--hHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHH-HHHhhhhhhhhhhh
Q 016048          314 LFGCVHMFLYSVAWSS--WVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSPLTG  389 (396)
Q Consensus       314 ~~~~i~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~  389 (396)
                      +...++...+...++.  +.... .+++|+...+-.-..-....|..|.+..|++.|+...+.++ |...+....|++.|
T Consensus       329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence            4445555555555433  22222 34445555555556667789999999999999999999998 99999999999887


Q ss_pred             c
Q 016048          390 D  390 (396)
Q Consensus       390 ~  390 (396)
                      .
T Consensus       409 ~  409 (448)
T COG2271         409 T  409 (448)
T ss_pred             c
Confidence            6

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=4.9e-36  Score=272.24  Aligned_cols=343  Identities=24%  Similarity=0.350  Sum_probs=266.7

Q ss_pred             HHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhH
Q 016048           10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSI   89 (396)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~   89 (396)
                      +++..++..++.....+.+|.+.       .++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~   73 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYL-------AEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA   73 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HH-------HCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHH-------HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence            45678888889999999999433       34567777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----h
Q 016048           90 IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----S  165 (396)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~  165 (396)
                      ++.++..++++   .+.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.+    +
T Consensus        74 ~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~  149 (352)
T PF07690_consen   74 LGSLLLAFASN---FWLLLIARFLLGI-GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG  149 (352)
T ss_dssp             HHHHHHHHHCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH
T ss_pred             hHHHHhhhhhh---HHHHhhhcccccc-ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc
Confidence            99776667677   7799999999999 88999999999999999999999999999999999999999999876    6


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHH
Q 016048          166 TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAA  245 (396)
Q Consensus       166 ~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (396)
                      ||+.|++.+++.++..++...+++++++++++++..              +++++.+   +++++.++.+++++.++...
T Consensus       150 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~  212 (352)
T PF07690_consen  150 WRWAFLISAILSLIAAILFILFLPEPPPPRERESPK--------------ESESKKP---KPLKPGFKSLFKNPVLWILL  212 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHCCC---STTTT--SST--------------TTT--HH---HCCCH-CTHHHHHHCCHHHH
T ss_pred             cccccccccchhhhhhhhHhhhhhhccccccccccc--------------ccccccc---cccccccccccccchhhhhh
Confidence            999999999999888776556666655443311000              0000011   11222222233556555455


Q ss_pred             HHHHHHHHhhhhhhhhHHHHhhhhcccc-ccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 016048          246 IVAFLSNLADAGLQGSMMYYLKAKFHFN-KNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS  324 (396)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  324 (396)
                      ...++..+.......+.|.|+.+.+|++ ..+.+......++...++. ++.+++.||+++|+..........+....+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  291 (352)
T PF07690_consen  213 IAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGS-LLAGRLSDRFGRRRRLLIAILLLILGALGLL  291 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            5555555566778889999988888999 7888988999999999998 7778999999987777766666666555554


Q ss_pred             Hhhh----hhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhh
Q 016048          325 VAWS----SWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSP  381 (396)
Q Consensus       325 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~  381 (396)
                      ....    .+......+.+++.+...+...++..|.+|++++|++.|+.+...+++..++|
T Consensus       292 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  292 LLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             CSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3322    23333456678888888999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=6.1e-35  Score=276.62  Aligned_cols=369  Identities=14%  Similarity=0.148  Sum_probs=289.4

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      +..+++..++..++..+..+.+|.+        .++++.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~--------~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   75 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTI--------AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTF   75 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHH
Confidence            4456778888889999999999998        44556777889999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh--
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--  164 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--  164 (396)
                      +..++.++++++++   ++.++++|+++|+ +.+...+...+++.|++|+++|++++++......+|..+||.+++.+  
T Consensus        76 ~~~~~~~~~~~~~~---~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711        76 AFTLGSLLCGVAPN---LELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             HHHHHHHHHhCcCC---HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence            99999999999999   9999999999999 88889999999999999999999999999999999999999998875  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc-ccccc----------------cchhhhhhhhhhhh---------
Q 016048          165 --STSAAFQAATAGSIISAVYMRIFLPESVRDEDL-YTPIL----------------SSKAEISASCEEST---------  216 (396)
Q Consensus       165 --~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~l~----------------~~~~~~~~~~~~~~---------  216 (396)
                        +||+.|++.+.+.++..++..+.+||+++++++ .|...                +.+++++.+.....         
T Consensus       152 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (485)
T TIGR00711       152 NYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVA  231 (485)
T ss_pred             CcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHH
Confidence              899999998888877777776777775443221 11100                00000000000000         


Q ss_pred             ---hhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHH
Q 016048          217 ---KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQL  293 (396)
Q Consensus       217 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  293 (396)
                         ....+.+++++..+ .+.+ ++|.++...+..++..+..++...++|.|+++.+|+++.+.+.......++..++. 
T Consensus       232 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~-  308 (485)
T TIGR00711       232 IIAFVVWELTDDNPLVD-LRLF-KYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSS-  308 (485)
T ss_pred             HHHHHHHHHcCCCCccC-HHHH-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-
Confidence               00001111122221 1222 56777777777777777778888899999999899999999999999999999999 


Q ss_pred             HHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHh--h--hhhHH-HHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhh
Q 016048          294 IMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVA--W--SSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC  368 (396)
Q Consensus       294 ~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~--~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  368 (396)
                      ++.+++.||++||+.+..+..+.+++..++...  +  +.+.. ....+.+++.+...+.......+..|++++++++|+
T Consensus       309 ~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~  388 (485)
T TIGR00711       309 PIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSL  388 (485)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHH
Confidence            777899999999999998888888887776631  1  12222 224556777777777777888888999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhc
Q 016048          369 ISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       369 ~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      .+..+.+|+.+++.+.|.++++
T Consensus       389 ~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       389 SNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=2.5e-34  Score=263.90  Aligned_cols=332  Identities=13%  Similarity=0.148  Sum_probs=254.1

Q ss_pred             HHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHH
Q 016048           17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA   96 (396)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~   96 (396)
                      .........+.+|.+        .++++.+..+.|+..+++.++..+++++.|+++||+|||+++..+.++.+++.+++.
T Consensus        32 ~~~~~~~~~~~l~~~--------~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~  103 (394)
T PRK10213         32 LIIVEFLPVSLLTPM--------AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS  103 (394)
T ss_pred             HHHHHHHHHhhHHHH--------HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH
Confidence            333334555667776        446788889999999999999999999999999999999999999999999999999


Q ss_pred             hccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHH
Q 016048           97 YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQA  172 (396)
Q Consensus        97 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~  172 (396)
                      ++++   ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++.....++|..+||.+++.+    +||+.|++
T Consensus       104 ~~~~---~~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  179 (394)
T PRK10213        104 FANS---FSLLLIGRACLGL-ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA  179 (394)
T ss_pred             HHCh---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            9988   9999999999999 88889999999999999999999999999999999999999988865    89999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHH
Q 016048          173 ATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSN  252 (396)
Q Consensus       173 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (396)
                      .+++.++..+.....+||+++++++                          ..++.++   .+ ++|.++...+..++..
T Consensus       180 ~~~l~~~~~l~~~~~~p~~~~~~~~--------------------------~~~~~~~---~l-~~~~~~~~~~~~~~~~  229 (394)
T PRK10213        180 AAVMGVLCIFWIIKSLPSLPGEPSH--------------------------QKQNTFR---LL-QRPGVMAGMIAIFMSF  229 (394)
T ss_pred             HHHHHHHHHHHHHHHCCCCCccccc--------------------------chhHHHH---Hh-cCHHHHHHHHHHHHHH
Confidence            8877776555554556765422110                          0001222   22 5677766655555555


Q ss_pred             HhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 016048          253 LADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVP  332 (396)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  332 (396)
                      ........+++.++.+++|+++.+.+......+++.+++. .+.+++.||.+++.............+++....++.+..
T Consensus       230 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~  308 (394)
T PRK10213        230 AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVA  308 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            5555556666444445669999999999999999999999 777899999654433443333344434444444444433


Q ss_pred             HH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          333 YA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       333 ~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .. .++.+++.+...+...+.+.+..| ++++++.+......++|..+||.+.|.++|..+
T Consensus       309 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g  368 (394)
T PRK10213        309 TGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIG  368 (394)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            33 455677788888888888998887 667788888888889999999999999999754

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=8.7e-35  Score=266.48  Aligned_cols=334  Identities=15%  Similarity=0.088  Sum_probs=258.4

Q ss_pred             ccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccC
Q 016048           21 TSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRS  100 (396)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~  100 (396)
                      .....+.+|.+        .++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus        19 ~~~~~~~~~~~--------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~   90 (377)
T TIGR00890        19 VYTWTLLAPPL--------GRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS   90 (377)
T ss_pred             HhhhhhHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH
Confidence            44556677776        4456788899999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHH
Q 016048          101 RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAG  176 (396)
Q Consensus       101 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~  176 (396)
                         ++.++++|++.|+ +.+...+.....+.|++| |+|+++.++...+.++|..+++.+...+    +||+.|++.+++
T Consensus        91 ---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        91 ---LAALYLTYGLASA-GVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             ---HHHHHHHHHHHhH-HHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence               9999999999999 888888888888999987 6799999999999999987755444432    799999999998


Q ss_pred             HHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhh
Q 016048          177 SIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADA  256 (396)
Q Consensus       177 ~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (396)
                      .++..+..++++||+++++++++             +      +.++++.+.++.   + +++.++......++......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~-------------~------~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~  222 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPPGQLIKTN-------------I------EVSVKDYTVWEM---L-RTPQFWVLYLSFFLNAVSGL  222 (377)
T ss_pred             HHHHHHHHHHheecCchhccccC-------------c------ccchhhhhHHHH---H-cCccHHHHHHHHHHHhHHHH
Confidence            88877776666666543221100             0      000000112222   2 45666666555555555555


Q ss_pred             hhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhh--HH-H
Q 016048          257 GLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSW--VP-Y  333 (396)
Q Consensus       257 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~-~  333 (396)
                      ....+.+.|.++ +|.++.+.+.......+...+++ +..+++.||++||+.+..+.....++.+.+...++..  .. .
T Consensus       223 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T TIGR00890       223 LLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGR-PFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLA  300 (377)
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHH
Confidence            555666777654 58888888889999999999999 7778999999999999888888888877766654322  12 1


Q ss_pred             HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          334 AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ...+.+.+.+...+...++..|.+|+++|+++.|+.+....+|..++|.+.|.+.|+.+
T Consensus       301 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  359 (377)
T TIGR00890       301 TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG  359 (377)
T ss_pred             HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            23344566666677778889999999999999999999999999999999999988654

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=5.9e-34  Score=268.96  Aligned_cols=362  Identities=14%  Similarity=0.107  Sum_probs=253.4

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHH-HHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGF-QQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~-~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      +....++.+++.++..++....|....+.. ++.++  .......+ ..++..++..+++++.|+++||+|||+++..+.
T Consensus        18 ~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         18 ITAASLGNAMEWFDFGVYGFVAYALGKVFF-PGADP--SVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            444567889999999988888776644432 22211  11111122 357888999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHH--------HHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHH
Q 016048           86 TLSIIPLAILAYSRSRNFFY--------AYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  157 (396)
                      ++++++.++++++++   ++        .++++|+++|+ +.|...+...++++|++|+++|+++.++...+..+|..+|
T Consensus        95 ~l~~i~~~~~a~~~~---~~~~g~~a~~~l~~~R~l~G~-g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg  170 (490)
T PRK10642         95 VIMSISTFCIGLIPS---YATIGIWAPILLLLCKMAQGF-SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG  170 (490)
T ss_pred             HHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHh-HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999   65        38899999999 9999999999999999999999999999998888888877


Q ss_pred             HHHHH------------HhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccC
Q 016048          158 TISAR------------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRL  225 (396)
Q Consensus       158 ~~~~~------------~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  225 (396)
                      +.+..            ..+||+.|++.+++.++ .++....+||+|+..++++..+       ++++    +...++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~-------~~~~----~~~~~~~~  238 (490)
T PRK10642        171 AGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLE-------QGDR----EGLQDGPK  238 (490)
T ss_pred             HHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhh-------hhcc----cccccccc
Confidence            65442            24899999997765554 3444567888876432110000       0000    00001122


Q ss_pred             CChhHHhhhhcCC-hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 016048          226 PSIDDMVHLLKSS-PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG  304 (396)
Q Consensus       226 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  304 (396)
                      .++++.++   ++ +.........++....+++...++|.|+++.+|++..+.+.......++..++. ++.++++||+|
T Consensus       239 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g  314 (490)
T PRK10642        239 VSFKEIAT---KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQ-PVMGLLSDRFG  314 (490)
T ss_pred             CCHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence            34555432   22 222222233344556677788899999988889988877777777778888888 67789999999


Q ss_pred             chhHHHHHHHHHHHHHHH-HHHhh--hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhh
Q 016048          305 EARLLSFGLLFGCVHMFL-YSVAW--SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVS  380 (396)
Q Consensus       305 ~~~~~~~~~~~~~i~~~~-~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~  380 (396)
                      ||+.+..+.+...+.... +....  +...... .++.+++.+...+....+..|.+|++.|+++.|+.+.....++.++
T Consensus       315 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~  394 (490)
T PRK10642        315 RRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLT  394 (490)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHH
Confidence            999887776543332222 22211  2222222 3334555555566677788899999999999998777777888999


Q ss_pred             hhhhhhhhhcc
Q 016048          381 PLAFSPLTGDC  391 (396)
Q Consensus       381 ~~~~g~l~~~~  391 (396)
                      |.+.|++.+..
T Consensus       395 p~i~g~l~~~~  405 (490)
T PRK10642        395 PTLAAWLVEST  405 (490)
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=3.9e-35  Score=268.98  Aligned_cols=361  Identities=12%  Similarity=0.082  Sum_probs=264.3

Q ss_pred             HHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHH
Q 016048           14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLA   93 (396)
Q Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~   93 (396)
                      .+...+......+..|.+        .++++.+..+.|++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~--------~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   75 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYL--------VEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL   75 (379)
T ss_pred             hhHHHHhHHhhhhhhHHH--------HHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHH
Confidence            345556666666777766        335677788999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHH-HHHHH----hhhHH
Q 016048           94 ILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGT-ISARF----ISTSA  168 (396)
Q Consensus        94 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~----~~~~~  168 (396)
                      +.+++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++| .++..    .+||+
T Consensus        76 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  151 (379)
T TIGR00881        76 FFGFSTS---LWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHW  151 (379)
T ss_pred             HHHHhhh---HHHHHHHHHHHHh-hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchh
Confidence            9999998   9999999999999 88988999999999999999999999999999999999998 35443    38999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHH
Q 016048          169 AFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVA  248 (396)
Q Consensus       169 ~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (396)
                      .|++.+++.++..+..++..||++++++.++..++. +   ++.++  ++++++++....++..+.+.++|.++...+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (379)
T TIGR00881       152 VFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP-N---EEPDG--DAEKKEEELTKKQIFLQYVLLNKVLWYISLGY  225 (379)
T ss_pred             HHHHHHHHHHHHHHHHheeeCCCccccccCccccCc-c---ccccc--ccccccccccchHHHHHHHHhcchHHHHHHHH
Confidence            999988888777676667777766543211100000 0   00000  00001111112222233344677788777777


Q ss_pred             HHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhc-chhHHH-HHH-HHHHHHHHHHHH
Q 016048          249 FLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG-EARLLS-FGL-LFGCVHMFLYSV  325 (396)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~-~~~-~~~~i~~~~~~~  325 (396)
                      ++..........+.|.|+++.+|+++.+.+.......+..+++. ++.+++.||.. +|+... ... ....++......
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (379)
T TIGR00881       226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGT-LLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL  304 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhH-HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence            77777778888899999998889999999999999999999999 77789999863 333222 211 112222222222


Q ss_pred             h--hhhhHH-HHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          326 A--WSSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       326 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      .  .+.... ......+.......+....+..|.+|+++|+++.|+.+....+|+.++|.+.|.+.|+.+-
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  375 (379)
T TIGR00881       305 NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW  375 (379)
T ss_pred             CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence            1  111211 2233334444445556677889999999999999999999999999999999999998654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=9.9e-34  Score=259.55  Aligned_cols=344  Identities=13%  Similarity=0.145  Sum_probs=263.0

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      ++.++.+....+....+.....|.+|.+        .+|++.+..+.|+..+.+.+++.+++++.|+++||+|||+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~   73 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTEL--------AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF   73 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHHH--------HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            3556778888889999999999999988        44567788899999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF  163 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  163 (396)
                      +.++.+++.++++++++   ++.+++.|++.|+ +.+...+....++.|+.|+++|+++++....+..+|..++|.+++.
T Consensus        74 ~~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  149 (382)
T PRK10091         74 LVALCVIGNAMFTLSSS---YLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY  149 (382)
T ss_pred             HHHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999   9999999999999 8888888888999999999999999999999999999999888776


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCCh
Q 016048          164 I----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP  239 (396)
Q Consensus       164 ~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (396)
                      +    +||+.|++.+++.++..+..+..+||.+++++.                             +.++.++.+ +++
T Consensus       150 l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~-----------------------------~~~~~~~~~-~~~  199 (382)
T PRK10091        150 LSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG-----------------------------GLREQFHFL-RSP  199 (382)
T ss_pred             HhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc-----------------------------CHHHHHHHh-cCh
Confidence            4    899999999988777766666678875432110                             000111122 344


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHH
Q 016048          240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH  319 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~  319 (396)
                      ..+.......+..........+++.|+.+.+|+++.+.+...+..+++.++++ ++.+++.||+++|+.+..+..+..++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~~r~~~~~~~~~~~~~~~i~  278 (382)
T PRK10091        200 APWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGN-LLSGRLSGRYSPLRIAAVTDFIIVLA  278 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh-HHHheeccccCchhHHHHHHHHHHHH
Confidence            44444444444333344445667778887789999999999999999999999 77789999999999988888887777


Q ss_pred             HHHHHHh-hhhhHHHH-HHHHHHhhhhhhhhhh-HHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          320 MFLYSVA-WSSWVPYA-AAVFSILSVFSHPCLR-TIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       320 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .+++... ++.+.... ..+.+.+.....+... ....+..|++.++.+.  .+....+|..+||.+.|.++|...
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~  352 (382)
T PRK10091        279 LLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGL  352 (382)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHccc
Confidence            7655443 33332222 2333444433344333 3444545555555543  467788999999999999999753

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.3e-34  Score=278.61  Aligned_cols=366  Identities=16%  Similarity=0.178  Sum_probs=265.8

Q ss_pred             HHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHH
Q 016048           11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII   90 (396)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~   90 (396)
                      .+..+...+....+.+.+|.+        ..+++.+..+.+++.+++.++.+++++++|+++||+|||++++++.++.++
T Consensus       173 ~l~~~~~g~d~~~is~ilp~i--------~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i  244 (742)
T TIGR01299       173 GLALMADGVEVFVVGFVLPSA--------EKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF  244 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            334444455555667777776        335667778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh------
Q 016048           91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI------  164 (396)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~------  164 (396)
                      +.++++++++   ++.++++|++.|+ +.++..+...+++.|++|+++|++.++++...+.+|.++++.++..+      
T Consensus       245 ~~ll~afa~s---~~~llv~R~l~G~-g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       245 FAFFSSFVQG---YGFFLFCRLLSGF-GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999998   9999999999999 88999999999999999999999999999999999999988765432      


Q ss_pred             -----------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-------ccccccccchhhhh-----hhhh-------h
Q 016048          165 -----------STSAAFQAATAGSIISAVYMRIFLPESVRDE-------DLYTPILSSKAEIS-----ASCE-------E  214 (396)
Q Consensus       165 -----------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~-------~~~~~l~~~~~~~~-----~~~~-------~  214 (396)
                                 +||+.+++.++..++. ++..+++||+|+..       +..+.+++....+.     +.+.       .
T Consensus       321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~  399 (742)
T TIGR01299       321 SFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT  399 (742)
T ss_pred             hhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence                       5888888877765554 44568899998741       11222222111100     0000       0


Q ss_pred             hhhhh---hhhccCC----------------ChhHHhhhhcC--ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhh----
Q 016048          215 STKKL---QVFKRLP----------------SIDDMVHLLKS--SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK----  269 (396)
Q Consensus       215 ~~~~~---~~~~~~~----------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  269 (396)
                      ..+.+   +.++...                .|.+..+++++  .+....+++..++..+.++++..|+|.++++.    
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~  479 (742)
T TIGR01299       400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADD  479 (742)
T ss_pred             hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000   0000000                01122222221  12334566677788888999999999875431    


Q ss_pred             c-----------------ccccc---------------------------------------------------------
Q 016048          270 F-----------------HFNKN---------------------------------------------------------  275 (396)
Q Consensus       270 ~-----------------g~~~~---------------------------------------------------------  275 (396)
                      +                 +++..                                                         
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~  559 (742)
T TIGR01299       480 YAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENT  559 (742)
T ss_pred             HHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcccc
Confidence            0                 00000                                                         


Q ss_pred             ------------------------------------chhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHH
Q 016048          276 ------------------------------------QFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH  319 (396)
Q Consensus       276 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~  319 (396)
                                                          .......+.+++.+++. ++.++++||+|||+++..+.++.+++
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~-il~g~L~Dr~GRr~~l~~~~~lsai~  638 (742)
T TIGR01299       560 DFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGN-IVSALLMDKIGRLRMLAGSMVLSCIS  638 (742)
T ss_pred             chhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                                                01233455668888888 77789999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          320 MFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       320 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      .+++++..+....++ .++++++.+..++...++++|.+|++.|++++|+.+....+|.+++|.+.|.+.+.
T Consensus       639 ~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~  710 (742)
T TIGR01299       639 CFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI  710 (742)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888877665443333 44556666777888999999999999999999999999999999999999988764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1.2e-33  Score=259.78  Aligned_cols=346  Identities=18%  Similarity=0.179  Sum_probs=270.1

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      +++....+....++..++..+..|.+|.+        .++++.+..+.|++.+++.++..+++++.|+++||+|||+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--------~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~   74 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFPEI--------AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLL   74 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH
Confidence            44445555666677778889999999988        4456778889999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                      .+.++.+++.++..++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|+++++..+....+|..++|.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  150 (385)
T TIGR00710        75 LGLFIFALSSLGLALSNN---IETLLVLRFVQAF-GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG  150 (385)
T ss_pred             HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHc-chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998   9999999999999 889999999999999999999999999999999999999998887


Q ss_pred             Hh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCC
Q 016048          163 FI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS  238 (396)
Q Consensus       163 ~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
                      .+    +||+.|++.++..++..+..++..||+++++++++                 .+       ...++.. ...++
T Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-------~~~~~~~-~~~~~  205 (385)
T TIGR00710       151 YILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQ-----------------IS-------TYFETFL-LLLKS  205 (385)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCC-----------------HH-------HHHHHHH-HHHcC
Confidence            64    79999999888887777766667777654332100                 00       0011111 12256


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      |.++...+..............+.|.++++.+|+++.+.+.......++.+++. ++.+++.||+++|+.+..+..+..+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~  284 (385)
T TIGR00710       206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGG-FLNGRFIKKWGAKSLLRMGLILFAV  284 (385)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            666666666555555566667778888888889999999999999999999999 7778999999999988888777777


Q ss_pred             HHHHHHHhh----hhh-HHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          319 HMFLYSVAW----SSW-VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       319 ~~~~~~~~~----~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                      +..++....    ..+ .... ..+.+.+.+...+.......|..| ++++++.++.+.....++.+.+.+.+.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       285 SAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666555432    111 1222 334566777778888888888887 6899999999998886666666666643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=2.5e-34  Score=266.86  Aligned_cols=353  Identities=16%  Similarity=0.134  Sum_probs=273.5

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      +++.+..++...++..++.++..+.+|.+..+        .+.+..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~   86 (417)
T PRK10489         15 THPAFRAVFIARFISIFGLGLLGVAVPVQIQM--------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLIL   86 (417)
T ss_pred             hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEE
Confidence            34566677888899999999999999998554        3456788999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHh-----ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHH
Q 016048           83 VPITLSIIPLAILAY-----SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  157 (396)
                      .+..+.+++.+..+.     .++   ++.+++.|++.|+ +.+...+...+++.|+.|+++|+++.++.+...++|..+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  162 (417)
T PRK10489         87 LARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGF-FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVIS  162 (417)
T ss_pred             ehHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhH
Confidence            988888777665542     345   7888999999999 8787888889999999999999999999999999999999


Q ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhh
Q 016048          158 TISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH  233 (396)
Q Consensus       158 ~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (396)
                      |.+++.+    +|++.|++.++..++..++ .+.+||+++++++++                       ++.++.++.++
T Consensus       163 ~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~  218 (417)
T PRK10489        163 PALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPALPPPPQPRE-----------------------HPLRSLLAGFR  218 (417)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCCCCCCcccc-----------------------cchHHHHHHHH
Confidence            9988765    7899998877766655443 456776543321000                       00001112222


Q ss_pred             hhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHH
Q 016048          234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGL  313 (396)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  313 (396)
                      ..+++|.++...+..++... ..+...++|.|.++.+|.++.+.+.+.+...++.+++. ++.+++.||.++++.+..+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~~~l~~~~~~~~~l~~~~  296 (417)
T PRK10489        219 FLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGA-LTSGWLAHSARPGLLMLLST  296 (417)
T ss_pred             HHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHH-HHHHHhhhccCcchHHHHHH
Confidence            33456666555544444332 34567788999998789999999999999999999999 67789999877777888877


Q ss_pred             HHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          314 LFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       314 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .+..++.+++...++.+.... .++.+++.+...+...++..|..|+++||+++|+.+...++|..++|.+.|.+.|..+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g  376 (417)
T PRK10489        297 LGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT  376 (417)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence            777777776665555443333 4445666666677788899999999999999999999999999999999999999765


Q ss_pred             C
Q 016048          393 F  393 (396)
Q Consensus       393 ~  393 (396)
                      .
T Consensus       377 ~  377 (417)
T PRK10489        377 P  377 (417)
T ss_pred             h
Confidence            4

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1.9e-33  Score=261.72  Aligned_cols=356  Identities=14%  Similarity=0.103  Sum_probs=247.3

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhcc-CCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAV-CPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      +...++..+++.++........|.+..+.. +...++  ..........++..++..+++++.|+++||+|||+++..+.
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~  101 (438)
T PRK09952         24 ALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA--MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH
Confidence            344566788888888877777665544422 111111  11111122234566778899999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHH--------HHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHH
Q 016048           86 TLSIIPLAILAYSRSRNFFY--------AYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  157 (396)
                      ++++++.++++++++   ++        .++++|+++|+ +.+..++....++.|++|+|+|++..+..+.+..+|.+++
T Consensus       102 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952        102 WMMGIATALIGLLPS---FSTIGWWAPVLLVTLRAIQGF-AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999   55        58899999999 9999999999999999999999999999999999998888


Q ss_pred             HHHHH------------HhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccC
Q 016048          158 TISAR------------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRL  225 (396)
Q Consensus       158 ~~~~~------------~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  225 (396)
                      +.+..            ..+||++|++.+++.++. +......||+|+..+++                  ++.++.+++
T Consensus       178 ~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~------------------~~~~~~~~~  238 (438)
T PRK09952        178 TGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQ------------------HEQAAAKKR  238 (438)
T ss_pred             HHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHH------------------hhccccccc
Confidence            65543            248999999887765443 33334566665432210                  000000111


Q ss_pred             CChhHHhhhhcCChhHHHHH-HHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 016048          226 PSIDDMVHLLKSSPTFSQAA-IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG  304 (396)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  304 (396)
                      .+..+   .++++++.+... ...++.....+....+.|.|.++.+|++...........++...++. ++.|+++||++
T Consensus       239 ~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~-~~~g~l~Dr~g  314 (438)
T PRK09952        239 IPVIE---ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTI-PCFAWLADRFG  314 (438)
T ss_pred             CCHHH---HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence            12222   122344444333 34445555667778899999988888888765555556677777777 67789999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh--h-h-hhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHH-HHHH
Q 016048          305 EARLLSFGLLFGCVHMFLYSVA--W-S-SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FANL  378 (396)
Q Consensus       305 ~~~~~~~~~~~~~i~~~~~~~~--~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~  378 (396)
                      ||+.+..+.++..++.+.+...  . + .+.... ..+.+++.+...+...++..|.+|+++|+++.|+.+.... +++.
T Consensus       315 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~  394 (438)
T PRK09952        315 RRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGG  394 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHH
Confidence            9998887766655544333221  1 1 222222 2333556666678888999999999999999999766654 8999


Q ss_pred             hhhhhhhhhhhcc
Q 016048          379 VSPLAFSPLTGDC  391 (396)
Q Consensus       379 ~~~~~~g~l~~~~  391 (396)
                      ++|.+.+++.|..
T Consensus       395 ~~p~i~g~l~~~~  407 (438)
T PRK09952        395 FTPFIAAALVTYF  407 (438)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998854

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=2.3e-33  Score=258.08  Aligned_cols=345  Identities=12%  Similarity=0.102  Sum_probs=268.3

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      ..++...++...+.....|.+|.+..+       +++.+..+.|+..+...+...+.+++.|+++||+|||+++..+.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~   85 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVD-------QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence            567788999999999999999988654       5677889999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh---
Q 016048           88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI---  164 (396)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~---  164 (396)
                      .+++.+.+.++++   ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++.+...++|..+||.+++.+   
T Consensus        86 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~  161 (400)
T PRK11646         86 RAAGFATMAIAHE---PWLLWLSCILSGL-GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY  161 (400)
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999888   8999999999999 87888888999999999999999999999999999999999998876   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHH
Q 016048          165 STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQA  244 (396)
Q Consensus       165 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (396)
                      +||+.|++.++..++..++..+.+||.+++++                     +   ++.++++++.   + ++|.++..
T Consensus       162 g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~---~-~~~~~~~~  213 (400)
T PRK11646        162 DFRLVCATGAVLFVLAAAFNAWLLPAYKLSTV---------------------R---TPVREGMTRV---L-RDKRFVTY  213 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCccccccc---------------------c---hhhHHHHHHH---H-cCchHHHH
Confidence            89999998888777666555556665321100                     0   0000112222   2 45555544


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 016048          245 AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS  324 (396)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  324 (396)
                      .+..+...........++|.|.++.. .++.+.+...+..++..........++..||++.++.+..+..+.+++..++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~  292 (400)
T PRK11646        214 VLTLTGYYMLAVQVMLMLPIMVNDIA-GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIG  292 (400)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            44433333333334567889888764 46778888888877777766645554444556666666777777777777776


Q ss_pred             HhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          325 VAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       325 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ..++.+.... ..+++.+.+...|...++..|..|+++||+++|+.+....+|..++|.+.|.+.|+.+
T Consensus       293 ~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        293 MVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence            6655543333 3455667777788889999999999999999999999999999999999999999853

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=259.30  Aligned_cols=345  Identities=14%  Similarity=0.084  Sum_probs=262.1

Q ss_pred             CCc-cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCch
Q 016048            1 MEK-KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKA   79 (396)
Q Consensus         1 m~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~   79 (396)
                      |++ +++++.++...++..++.+...|.+|.+.+        +++.|..+.|++.+.+.++..+++++.|+++||+|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~--------~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633          1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA--------QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            443 567888899999999999999999999944        45677889999999999999999999999999999999


Q ss_pred             hhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHH
Q 016048           80 LLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  159 (396)
                      ++..+.++.+++..+++++++   ++.++++|+++|+ +.+...+...+.+.|..++++|+++++......++|..+||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  148 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGI-GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL  148 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998   9999999999999 888888888888889999999999999999999999999999


Q ss_pred             HHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhc
Q 016048          160 SARFIST---SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK  236 (396)
Q Consensus       160 ~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (396)
                      +++.+..   +...+........... . .+.+.++++++                         +++..+.++.+    
T Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-------------------------~~~~~~~~~~~----  197 (381)
T PRK03633        149 LVSKVSTELMSVLPWVTGLVLAAILP-L-LFTRILNQQAE-------------------------NHDSTSIWPML----  197 (381)
T ss_pred             HHhcccccccchHHHHHHHHHHHHHH-H-HHhcccCCCCC-------------------------CCCCCCHHHHH----
Confidence            9987632   2222222222222111 1 22222111111                         00011222222    


Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG  316 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  316 (396)
                      ++|.++......+.....+.....++|.|.++. |.++.+.+...+...+..++++ +..+++.||+++|+.+..+....
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~~~~~~l~~~~~~~  275 (381)
T PRK03633        198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQ-GMSDASIGFWMALLVSAGILGQ-WPIGRLADRFGRLLVLRVQVFVV  275 (381)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHcCcHHHHHHHHHHH
Confidence            344444433333344444555667889998774 9999888999999999999999 66789999999999988887777


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          317 CVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       317 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .++...+.  ..........+++.+.....|...+.+.|..|+++++.+.+..+...++|..++|.+.|.+.|+.+
T Consensus       276 ~~~~~~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g  349 (381)
T PRK03633        276 ILGSIAML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS  349 (381)
T ss_pred             HHHHHHHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77665443  122222234445555566788899999999998888888888888899999999999999998764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.4e-33  Score=262.53  Aligned_cols=345  Identities=12%  Similarity=0.056  Sum_probs=239.6

Q ss_pred             HHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHH
Q 016048           11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII   90 (396)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~   90 (396)
                      .++.+++.++...+....|.+..+....+.+  ..+..+.+...+..+++..++++++|+++||+|||+++..+.+++++
T Consensus        28 ~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~  105 (432)
T PRK10406         28 SSGNLVEWFDFYVYSFCSLYFAHIFFPSGNT--TTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCF  105 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            4567888888888766666554442211111  12222445555666777779999999999999999999999999999


Q ss_pred             HHHHHHhccCch-----hHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH---
Q 016048           91 PLAILAYSRSRN-----FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR---  162 (396)
Q Consensus        91 ~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~---  162 (396)
                      +.++++++++..     .+..++++|+++|+ +.|..++...+++.|++|+++|+++.+..+.+...|..+++.+..   
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        106 GSLVIACLPGYETIGTWAPALLLLARLFQGL-SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998821     12468899999999 999999999999999999999999999988888888777765532   


Q ss_pred             ---------HhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhh
Q 016048          163 ---------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH  233 (396)
Q Consensus       163 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (396)
                               ..+||+.|++.+++.++.. .....+||+++++++                       +.+++.++++.+ 
T Consensus       185 ~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~~~~~-----------------------~~~~~~~~~~l~-  239 (432)
T PRK10406        185 QTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETSQQETR-----------------------ALKEAGSLKGLW-  239 (432)
T ss_pred             HhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCchHHHh-----------------------hhcccccHHHHH-
Confidence                     2489999998877766543 334456665432110                       001122455543 


Q ss_pred             hhcCChhHHHHHHHHHH-HHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHH
Q 016048          234 LLKSSPTFSQAAIVAFL-SNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFG  312 (396)
Q Consensus       234 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  312 (396)
                         ++++.+...+...+ ....++....++|.|+++.+|++..+.+.......+...+++ .+.|+++||++||+.+..+
T Consensus       240 ---~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~-~~~G~l~Dr~grr~~~~~~  315 (432)
T PRK10406        240 ---RNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQ-PLIGALSDKIGRRTSMLCF  315 (432)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHH
Confidence               45555554444333 355667788899999988889998888888888888888888 5668999999999887766


Q ss_pred             HHHHHHHHHHHH--Hh--hhhhHHHHHHHH-HHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHH-HHHhhhhhhhh
Q 016048          313 LLFGCVHMFLYS--VA--WSSWVPYAAAVF-SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSP  386 (396)
Q Consensus       313 ~~~~~i~~~~~~--~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~  386 (396)
                      ..+..+....+.  ..  .+.........+ ....+...+....+.+|.+|+++|+++.|+.+...+. .+...|.+.+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~  395 (432)
T PRK10406        316 GSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS  395 (432)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH
Confidence            554433322121  11  112211111221 2233334456778899999999999999999988764 35557777774


Q ss_pred             h
Q 016048          387 L  387 (396)
Q Consensus       387 l  387 (396)
                      +
T Consensus       396 l  396 (432)
T PRK10406        396 L  396 (432)
T ss_pred             H
Confidence            4

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=5.6e-34  Score=265.51  Aligned_cols=357  Identities=15%  Similarity=0.165  Sum_probs=258.8

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      .+...++..+.+.++.....+.+|.+        +++++.+..+.+++.+++.++..+++++.|+++||+|||+++..+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~   90 (426)
T PRK12307         19 ALFSAWLGYVFDGFDFMLIFYIMYLI--------KADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI   90 (426)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34556677777788888888888877        4456778889999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      ++.+++.++++++++   ++.++++|+++|+ +.+...+....++.|++|+|+|++++++...+.++|.++++.+...+ 
T Consensus        91 ~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307         91 VAYSVGTGLSGLASG---VIMLTLSRFIVGM-GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             HHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence            999999999999998   9999999999999 88888999999999999999999999999999999999998877653 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhH
Q 016048          165 ---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTF  241 (396)
Q Consensus       165 ---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (396)
                         +||+.|++.....++ .+......||+++.++++.       ++ ++ +  +++...+..+.++++.   + +++.+
T Consensus       167 ~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~-------~~-~~-~--~~~~~~~~~~~~~~~~---~-~~~~~  230 (426)
T PRK12307        167 EAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKL-------SG-KG-K--HSQSAWSVFSLSMKGL---F-NRAQF  230 (426)
T ss_pred             ccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhh-------hc-cc-c--ccccchhhhhHHHHHH---H-hhchH
Confidence               899999875443322 2222223344432111000       00 00 0  0000000001122232   2 44554


Q ss_pred             HHHHHHH---HHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          242 SQAAIVA---FLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       242 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      +......   +...........++|.|+++. |+++.+.+...+...++.++++ ++.+++.||++||+.+..+.++..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~~~~~~~~~~  308 (426)
T PRK12307        231 PLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGN-IVWGLCADRIGLKKTFSIGLLMSFL  308 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4333222   222223334567889988874 9999888988899999999999 7778999999999998888877666


Q ss_pred             HHHHHHHhhhh-hHHHHHHHHHHh--hhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          319 HMFLYSVAWSS-WVPYAAAVFSIL--SVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       319 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ..+.+...... .......+++.+  .....+....++.|.+|+++||++.|+.+...++++.++|.+.|++.++.+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        309 FIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence            65544433222 222222233322  223345666788999999999999999999999999999999999998753

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=4.5e-33  Score=255.14  Aligned_cols=341  Identities=14%  Similarity=0.117  Sum_probs=259.7

Q ss_pred             HHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH-HHHHhH
Q 016048           11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV-PITLSI   89 (396)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~-~~~~~~   89 (396)
                      .+..++..++.++..|.+|.+..+       +++.+..+.|++.+++.+...+.+++.|+++||+||||.++. +.....
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~   75 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSE-------EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA   75 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHc-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            456788889999999999998544       567788899999999999999999999999999999987655 566666


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhH--HHHHHHhhhhhhHHHHHHHHHh---
Q 016048           90 IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASV--FGIFSGIVSGAFVCGTISARFI---  164 (396)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~~---  164 (396)
                      ++.++++++++   ++.+++.|++.|. ..+...|...++..|+.|+++|++.  .+......++|.++||.+++.+   
T Consensus        76 ~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  151 (375)
T TIGR00899        76 LACLLFAWNRN---YFLLLVLGVLLSS-FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG  151 (375)
T ss_pred             HHHHHHHhcch---HHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence            77788889888   8889999999987 7777888888999999888777754  5777778888999998888755   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHH
Q 016048          165 -STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ  243 (396)
Q Consensus       165 -~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (396)
                       +||+.|++.++..++..+..++.+||+|+++++++                        ++.+.++    ..++|.++.
T Consensus       152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~----~~~~~~~~~  203 (375)
T TIGR00899       152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL------------------------TRLEVRG----LLASRDTRL  203 (375)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc------------------------Ccchhhh----hhcCcchHH
Confidence             79999999988887777777677888654322100                        0001111    113455554


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY  323 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  323 (396)
                      .....++..........+.|.|+++.+|.++.+.+...........++. +..+++.||+++|+.+..+.....+....+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~  282 (375)
T TIGR00899       204 LFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAALAGVAFYTGL  282 (375)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            4444444444444556678889888889999998888877777777777 677899999999998887777666655555


Q ss_pred             HHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ...++.+.... ..+.+++.+...+....+..|..|+ ++++++++.+...++|..++|.+.|.+.|..+
T Consensus       283 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g  351 (375)
T TIGR00899       283 AADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS  351 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            55444443333 3444666777778888889998875 56799999999999999999999999988753

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.3e-33  Score=259.94  Aligned_cols=345  Identities=15%  Similarity=0.082  Sum_probs=267.5

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      ..+..++..++.........+.+|.+        .++++.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~~~~i--------~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~   79 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMVMGPI--------AEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF   79 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34455667777777777788888887        4456788889999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH--
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF--  163 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~--  163 (396)
                      ++.+++.++++++++   ++.+++.|+++|+ +.+...+...+++.|++|+++|+++++..+...++|..++|.+.+.  
T Consensus        80 ~~~~i~~~l~~~~~~---~~~~~~~~~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (394)
T PRK03699         80 ALMILAVAGLMFSHS---LALFSIAMFVLGV-VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL  155 (394)
T ss_pred             HHHHHHHHHHHHcch---HHHHHHHHHHHHH-hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988   8999999999999 8888888889999999999999999999888888888888877654  


Q ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChh
Q 016048          164 ---ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT  240 (396)
Q Consensus       164 ---~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (396)
                         .+||+.|.+.+++.++..++.+ . ++.|+.+++++                  +++ +   ...++.     .++.
T Consensus       156 ~~~~gw~~~f~~~~~~~~~~~~~~~-~-~~~p~~~~~~~------------------~~~-~---~~~~~~-----~~~~  206 (394)
T PRK03699        156 ARSIEWYWVYACIGLVYVAIFILTL-F-SEFPALGKHAP------------------KAD-K---PVAKEK-----WGIG  206 (394)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHH-h-cCCccccccCc------------------ccc-C---cccccc-----CChH
Confidence               3799999988887766554432 2 22222111000                  000 0   000110     1345


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHH
Q 016048          241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM  320 (396)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~  320 (396)
                      ++...+..++....++....++|.|+++.+|+|+.+.+.+.+...++..++. ++.+++.||+++|+.+.....+..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~l~~~~~~~~~~~  285 (394)
T PRK03699        207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGM-WIFSFIVRFFDLQRILTVLAGLALVLM  285 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHHHHHHHHHHHH
Confidence            5555666666666677788999999998889999999999999999999999 777899999999998887777766666


Q ss_pred             HHHHHhhhhhHH-HHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          321 FLYSVAWSSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       321 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      .++...++.+.. ...+..+++.+..++...+...|..| +++++..+......++|..++|.+.|++.|..+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~  358 (394)
T PRK03699        286 YLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGL  358 (394)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCc
Confidence            665554444332 23455566667777887888888776 5567888999999999999999999999997543

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=6.4e-34  Score=262.72  Aligned_cols=363  Identities=16%  Similarity=0.146  Sum_probs=261.5

Q ss_pred             HHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHH
Q 016048           11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII   90 (396)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~   90 (396)
                      +...+...+......+..|.+        .++++.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        23 FLIMLMDGYDLAAMGFAAPAI--------SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHhhHHHH--------hhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence            334445555556666677776        345677788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hh
Q 016048           91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----ST  166 (396)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~  166 (396)
                      +.++..++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++......+|..+++.+++.+    +|
T Consensus        95 ~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  170 (398)
T TIGR00895        95 FTLLCALATN---VTQLLILRFLAGL-GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW  170 (398)
T ss_pred             HHHHHHHccc---hHHHHHHHHHHhc-ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999988   8999999999999 88999999999999999999999999999999999999999888765    78


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc--cccccchhhhhhh--hhhhhhhhhhhccCCChhHHhhhhcCCh---
Q 016048          167 SAAFQAATAGSIISAVYMRIFLPESVRDEDLY--TPILSSKAEISAS--CEESTKKLQVFKRLPSIDDMVHLLKSSP---  239 (396)
Q Consensus       167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~--~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  239 (396)
                      |+.|++.+++..+..++....+||+++...++  +..++..++..++  ++.+++..+++++....++..+.+++++   
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (398)
T TIGR00895       171 RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTAR  250 (398)
T ss_pred             eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHH
Confidence            99999887777766666667788876432111  0000000000000  0000000000111112233333222222   


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHH
Q 016048          240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH  319 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~  319 (396)
                      .........++..........+.|. +.+.+|+++.+.+.......++.+++. ++.+++.||+++|+............
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLPK-LMVELGFSLSLAATGGALFNFGGVIGS-IIFGWLADRLGPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            2333334444555556666777784 445569999999999999999999999 77789999999985544444333333


Q ss_pred             HHHHHHhhhhhHH-HHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          320 MFLYSVAWSSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       320 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                      ..+.....+.+.. ...++.+++.+...+...++..|.+|+++|+++.|+.+....+|..++|.+.|.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       329 VLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3333323333333 3355667888888899999999999999999999999999999999999999976

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=5.6e-33  Score=255.79  Aligned_cols=342  Identities=18%  Similarity=0.165  Sum_probs=250.9

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +.++.+.+..++..++.++..|.+|.++.+       |++.+..+.|++.+++.++..+++++.|+++||+||||+++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~-------~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~   87 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHH-------DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQG   87 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHH-------hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHH
Confidence            456667788889999999999999987654       4677888999999999999999999999999999999999998


Q ss_pred             HHHhHHHHHHH---HhccC--chhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHH
Q 016048           85 ITLSIIPLAIL---AYSRS--RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        85 ~~~~~~~~~~~---~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  159 (396)
                      .+...++.+..   .+.+.  ..+++.++++|+++|+ +.+...+...+++.|+.|+|+|++++++.+.+.+.|..+||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~  166 (392)
T PRK12382         88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF-GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAP  166 (392)
T ss_pred             HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHH
Confidence            88877665433   22211  1127889999999999 888888888999999999999999999999999999999999


Q ss_pred             HHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhh
Q 016048          160 SARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLL  235 (396)
Q Consensus       160 ~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (396)
                      +++.+    +||+.+.+..+..++..... ...||.+++++                           ++.+.++..+.+
T Consensus       167 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------------------~~~~~~~~~~~~  218 (392)
T PRK12382        167 LGLLLHSHFGFAALALTTMVLPLLAWAFN-GTVRKVPAHAG---------------------------ERPSLWSVVGLI  218 (392)
T ss_pred             HHHHHHhccChHHHHHHHHHHHHHHHHHH-HhccCCCCCcc---------------------------cCchHHHHHHHH
Confidence            88764    78776665544433322211 22222211100                           001122222111


Q ss_pred             cCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHH
Q 016048          236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF  315 (396)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  315 (396)
                      ++ +.     +...+..........+.+.|+++. +++.  .+......+++.++++ +..+++.||+++|+.+..+..+
T Consensus       219 ~~-~~-----~~~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~  288 (392)
T PRK12382        219 WK-PG-----LGLALQGVGFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMR-VLFGWMPDRFGGVKVAIVSLLV  288 (392)
T ss_pred             HH-hH-----HHHHHHHHHHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHH-HHHHHHHHhcCCCeehHHHHHH
Confidence            11 11     112222334445566778887664 6653  4566666777778888 6778999999999999888888


Q ss_pred             HHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          316 GCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       316 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ..++.+++...++.+.... ..+.+++.+...+...+...|..|+++||++.|+.+....+|..++|.+.|.+.|+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g  366 (392)
T PRK12382        289 ETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG  366 (392)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8888777766555443333 4455677777788888888999999999999999999999999999999999998754

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=4.3e-33  Score=257.27  Aligned_cols=344  Identities=13%  Similarity=0.128  Sum_probs=258.4

Q ss_pred             CccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhh
Q 016048            2 EKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALL   81 (396)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~   81 (396)
                      |.++++..+.+..++..++.++..|.+|.+..+       +++.|..+.|++.+++.++..+++++.|+++||+||||++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHD-------QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV   84 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence            456778889999999999999999999987654       4567788999999999999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHhc---cCc--hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHH
Q 016048           82 TVPITLSIIPLAILAYS---RSR--NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVC  156 (396)
Q Consensus        82 ~~~~~~~~~~~~~~~~~---~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  156 (396)
                      ..+.++.+++.+.+.++   ++.  .+++.+++.|+++|+ +.+...+...+++.|+.|+|+|++++++.+....+|.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  163 (399)
T PRK05122         85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI-GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI  163 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh-hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence            99999888877665543   221  126788999999999 888888999999999999999999999999999999999


Q ss_pred             HHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHh
Q 016048          157 GTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMV  232 (396)
Q Consensus       157 g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (396)
                      |+.+++.+    +||..+++..+..++..+.. ...||++++++                           ++.++++.+
T Consensus       164 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------------------~~~~~~~~~  215 (399)
T PRK05122        164 GAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRPAVPPVKG---------------------------ERLPFRRVL  215 (399)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCc---------------------------cchhHHHHH
Confidence            88888764    78888877666544332221 11222111000                           001122221


Q ss_pred             hhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHH
Q 016048          233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFG  312 (396)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  312 (396)
                      +      +.+.......+....+.....+.+.|+.+. |++  +.+.......++.+++. +..+++.||+++|+.+..+
T Consensus       216 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~  285 (399)
T PRK05122        216 G------RVWPYGMGLALASIGFGTIATFITLYYAAR-GWD--GAALALTLFGVAFVGAR-LLFGNLINRLGGLRVAIVS  285 (399)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc--cchHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHH
Confidence            1      111112222233344455567778887654 653  44666677888888888 6678999999999998888


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          313 LLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       313 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ..+..++...+...++.+.... ..+.+++.+..++.......|..|+++||++.|+.+....+|..++|.+.|.+.|+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  365 (399)
T PRK05122        286 LLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF  365 (399)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8888888777766655444333 455677777778888888889999999999999999999999999999999998864

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=6.1e-33  Score=256.70  Aligned_cols=344  Identities=13%  Similarity=0.096  Sum_probs=266.0

Q ss_pred             HHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHH
Q 016048           11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII   90 (396)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~   90 (396)
                      .+..++..++.++..|.+|.+        .++++.+..+.++..+.+.+++.+++++.|+++||+||||++..+..+.++
T Consensus        19 ~l~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         19 VLFEFATYIANDMIQPGMLAV--------VEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHhhhhhHhcchHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            444555566788888999887        345667778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hh
Q 016048           91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----ST  166 (396)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~  166 (396)
                      +.+.+.++++   ++.+++.|+++|+ +.+...+...+.+.|.+|+++|.+.+++......+|..+||.+++.+    +|
T Consensus        91 ~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w  166 (406)
T PRK15402         91 TCLAILLAQS---IEQFTLLRFLQGI-GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW  166 (406)
T ss_pred             HHHHHHHHcc---HHHHHHHHHHHHh-HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence            9999999998   8999999999999 88888888999999999999999999998888888888898887664    89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHH
Q 016048          167 SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAI  246 (396)
Q Consensus       167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (396)
                      |+.|++.+++.++..+..++..||++++++++.                 +.       .+..+..+.+.++|.++...+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-------~~~~~~~~~~~~~~~~~~~~~  222 (406)
T PRK15402        167 RGMFVLFAALAALSFFGLWRAMPETAGRVGEKL-----------------SL-------KELGRDYKLVLKNRRFVAGAL  222 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCccccccc-----------------cH-------HHHHHHHHHHHcCcHHHHHHH
Confidence            999999888887776666666777643322000                 00       001111222335677776666


Q ss_pred             HHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHh
Q 016048          247 VAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVA  326 (396)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~  326 (396)
                      ...+..........+.|.|+.+.+|+++.+.+........+..++. ++.+++.||+++|+.+..+..+..++..++...
T Consensus       223 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~-~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~  301 (406)
T PRK15402        223 ALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGN-LTLARLTSRRPLRSLIRMGLWPMVAGLLLAALA  301 (406)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655555555566677888888889999888888777777888888 677899999999999888888777777766553


Q ss_pred             h-----hhhHH-HHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          327 W-----SSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       327 ~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .     +.+.. ....+.+++.+...+......... +++++|++.+..+..+.++..+++.+.+.+++...
T Consensus       302 ~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  372 (406)
T PRK15402        302 TVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG  372 (406)
T ss_pred             HHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            2     12222 224455667766666666655443 45899999999999999999999999999987654

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=3.1e-33  Score=263.71  Aligned_cols=372  Identities=13%  Similarity=0.092  Sum_probs=284.2

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      .++.++...++..++.....+.+|.+.+        +++.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~   82 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQ--------SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI   82 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            5667788888888888899999999843        45777788999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      ++.+++.+++.++++   ++.+++.|+++|+ +.+...+...+++.|++|+++|+++.+......++|..+||.+++.+ 
T Consensus        83 ~~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         83 VLFTLGSLFCALSGT---LNELLLARVLQGV-GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHHHHHHHHHhCC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            999999999999888   8999999999999 88999999999999999999999999999999999999999988765 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc------------hhhhhh-hhhh--h-----------
Q 016048          165 ---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSS------------KAEISA-SCEE--S-----------  215 (396)
Q Consensus       165 ---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~------------~~~~~~-~~~~--~-----------  215 (396)
                         +||+.|++......+..+......|+.+.++++.+.....            .++.+. ....  .           
T Consensus       159 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (471)
T PRK10504        159 EYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVAL  238 (471)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHH
Confidence               8999999988877776666656666554332221110000            000000 0000  0           


Q ss_pred             -hhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHH
Q 016048          216 -TKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLI  294 (396)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  294 (396)
                       ....++++.+++..+ .+ ++++|.+.......++..........+.|+|.++..|.++.+.+.......+...++. .
T Consensus       239 ~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~  315 (471)
T PRK10504        239 LLYLLHARNNNRALFS-LK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMK-R  315 (471)
T ss_pred             HHHHHHHhcCCCCccC-HH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-H
Confidence             000001111111111 11 3367778777777777777766667788899888789999999999888888888887 6


Q ss_pred             HHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh--h-hhHHH-HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHH
Q 016048          295 MMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW--S-SWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCIS  370 (396)
Q Consensus       295 ~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  370 (396)
                      +.+++.||+|+|+++..+..+..+...++....  . .+... ...+.+++.+...+.......+.+|+++++.++|+.+
T Consensus       316 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  395 (471)
T PRK10504        316 IVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLS  395 (471)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHH
Confidence            678999999999999888887777766655532  1 11112 2344467777788888899999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhhhccc
Q 016048          371 GICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       371 ~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      +...+|..+++.+.|.+++...
T Consensus       396 ~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        396 MIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999988764

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=2.2e-33  Score=257.84  Aligned_cols=352  Identities=15%  Similarity=0.144  Sum_probs=275.0

Q ss_pred             CccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhh
Q 016048            2 EKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALL   81 (396)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~   81 (396)
                      +.||.++.+.+..++...+.+...|.+|.++.+       +++.+..+.|++.+++.++..+++++.|+++||+|||+++
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~-------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~   76 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSR-------QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM   76 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH
Confidence            356678888889999999999999999998755       4678888999999999999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHH
Q 016048           82 TVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA  161 (396)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  161 (396)
                      +.+.++.+++.++.+++++   ++.++++|.+.|. +.+...+...++..|..|+++|++++++.....++|..+||.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~  152 (395)
T PRK10054         77 LLAITAFASGFIAIPLVNN---VTLVVLFFALINC-AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLG  152 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988   8888889999887 76777888999999999999999999999999999999999999


Q ss_pred             HHh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCC
Q 016048          162 RFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS  238 (396)
Q Consensus       162 ~~~---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
                      +.+   +|+..|++.+++.++..+...+.+||++++++++                   +++.    .+.++    ..++
T Consensus       153 ~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-------------------~~~~----~~~~~----~~~~  205 (395)
T PRK10054        153 TLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-------------------TGSV----WSPSV----LLQD  205 (395)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-------------------hhhh----hhhhh----hccC
Confidence            876   7999999888877776665556666654322100                   0000    00112    2356


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhh--ccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAK--FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG  316 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  316 (396)
                      |.++......++..........+.+.|..+.  .+.+....+.......+.....+ ...+++.||.++|+.+..+..+.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQ-YSVGRRLNAANIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeeh-hHHHHHHccCCchhHHHHHHHHH
Confidence            7776666666666555555555666666432  35566667777777777777777 55578999999999988888888


Q ss_pred             HHHHHHHHHh-hhhhHHH-HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          317 CVHMFLYSVA-WSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       317 ~i~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      .++...+... .+.+... ...+++++.....|...+.+.+..|++.++++.+..+ ...+|..+||.++|.++|+.+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~  362 (395)
T PRK10054        285 VIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPP  362 (395)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcCh
Confidence            8877666553 2333222 3555677777777888899999999999999998765 6779999999999999998754

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3.6e-33  Score=264.56  Aligned_cols=375  Identities=14%  Similarity=0.114  Sum_probs=256.6

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHh
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS   88 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~   88 (396)
                      ...++.+.+.++.+......|.+-.+..   ..+...+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus        20 ~~~~~~~~~g~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~   96 (502)
T TIGR00887        20 IAGVGFFTDSYDLFCISLVTKMLGYVYY---HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIM   96 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            4566778888888888888887644321   1234566778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCch---hHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           89 IIPLAILAYSRSRN---FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        89 ~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      .++.++++++++..   .++.++++|+++|+ +.+...+....+++|++|+++|++++++.+....+|.++++.++..+ 
T Consensus        97 ~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887        97 IIATVASGLSPGSSPKSVMATLCFWRFWLGV-GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHHHHHHccCcccchHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888876421   15789999999999 99999999999999999999999999999999999998888776421 


Q ss_pred             --------------------------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCC---cccc-c-c---cccchhhh-h
Q 016048          165 --------------------------STSAAFQAATAGSIISAVYMRIFLPESVRD---EDLY-T-P---ILSSKAEI-S  209 (396)
Q Consensus       165 --------------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~---~~~~-~-~---l~~~~~~~-~  209 (396)
                                                +||+.|.+.++.+++..+ ..+++||+|+.   ++++ + .   +.+..+++ .
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~  254 (502)
T TIGR00887       176 AGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIE  254 (502)
T ss_pred             HHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccc
Confidence                                      599999877776665444 45789999873   1111 1 1   11111100 0


Q ss_pred             hhhhhhhh-hhhhhccCCChhHHhhhhcCChhHHHH---HHHHHHHHHhhhhhhhhHHHHhhhhccccccchhh------
Q 016048          210 ASCEESTK-KLQVFKRLPSIDDMVHLLKSSPTFSQA---AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFAD------  279 (396)
Q Consensus       210 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------  279 (396)
                      ++.++.++ ++++++.+.++++.++...+++..+..   ....+...+.+++...+.|.++++ .|+++.+.+.      
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~  333 (502)
T TIGR00887       255 AEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEEL  333 (502)
T ss_pred             cCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHH
Confidence            00000000 000111112456655322222222222   222333444566777778888865 4877653221      


Q ss_pred             ------HHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhh---hHHHH-HHHHH-Hhhhhhhhh
Q 016048          280 ------LMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS---WVPYA-AAVFS-ILSVFSHPC  348 (396)
Q Consensus       280 ------~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~-~~~~~-~~~~~~~~~  348 (396)
                            ......++.+++. ++.+++.||+|||+++..+..+..+++.++......   ..... ..+.. .+.....+.
T Consensus       334 ~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (502)
T TIGR00887       334 YKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNAT  412 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCch
Confidence                  1223344555566 667899999999999888887777776666543211   11111 11111 222334567


Q ss_pred             hhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          349 LRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       349 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      .+.+.+|.+|++.|+++.|+.+..++++++++|.+.+.+.|.
T Consensus       413 ~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       413 TFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             hhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            788889999999999999999999999999999999999884

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=4.8e-33  Score=263.20  Aligned_cols=371  Identities=15%  Similarity=0.123  Sum_probs=254.4

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHh
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS   88 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~   88 (396)
                      ...++.+.+.++...+.+..|.+.++...+...+.+.+..+.+++.+++.++.+++++++|+++||+|||++++.+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~   95 (479)
T PRK10077         16 VATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLF   95 (479)
T ss_pred             HHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            34566777888888888888887665544445567888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc---------cCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHH
Q 016048           89 IIPLAILAYS---------RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        89 ~~~~~~~~~~---------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  159 (396)
                      .++.+.+++.         ++.+.++.++++|+++|+ +.+...+...++++|++|+++|++++++.+.+..+|.++++.
T Consensus        96 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~  174 (479)
T PRK10077         96 FISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI-GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYF  174 (479)
T ss_pred             HHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh-hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9988887763         232335778899999999 999999999999999999999999999999999999998887


Q ss_pred             HHHH------------hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc---ccc----cccchhhhhhhhhhhhhhhh
Q 016048          160 SARF------------ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDL---YTP----ILSSKAEISASCEESTKKLQ  220 (396)
Q Consensus       160 ~~~~------------~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~---~~~----l~~~~~~~~~~~~~~~~~~~  220 (396)
                      ++..            .+||+.|++.++..++..+ ..+++||+|++..+   ++.    .++.....+.++..++.++.
T Consensus       175 ~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (479)
T PRK10077        175 VNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHS  253 (479)
T ss_pred             HHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence            7643            3799999988877777654 45778998753211   100    00000000000000000000


Q ss_pred             hhccCCChhHHhhhhcCChhHHHHHHH----HHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHH
Q 016048          221 VFKRLPSIDDMVHLLKSSPTFSQAAIV----AFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMM  296 (396)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  296 (396)
                      .+++....+..+    . .........    .+...........+.|.+..+ .|.+...........++...++. ++.
T Consensus       254 ~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~-~~~  326 (479)
T PRK10077        254 LDHGRKTGGKLL----M-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFT-VLA  326 (479)
T ss_pred             HHHhhhhhhhhc----c-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHH-HHH
Confidence            000000000000    0 000011111    111111122233344555544 58887777777777888888888 777


Q ss_pred             HhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh---hhHH--HHHHHHHHhhhh-hhhhhhHHHhhccCCccchhHhhhHH
Q 016048          297 PVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS---SWVP--YAAAVFSILSVF-SHPCLRTIVSKQVASNEQGKAQGCIS  370 (396)
Q Consensus       297 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~---~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~  370 (396)
                      +++.||+|||+.+..+..+.+++.+.+.....   ....  ....+++.+.+. ..|..+.+++|.+|+++|+++.|+.+
T Consensus       327 g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~  406 (479)
T PRK10077        327 IMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAV  406 (479)
T ss_pred             HHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHH
Confidence            89999999999999999988888777654321   1111  122233333333 34778899999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhh
Q 016048          371 GICSFANLVSPLAFSPLT  388 (396)
Q Consensus       371 ~~~~~g~~~~~~~~g~l~  388 (396)
                      ..++++.++++.+.+.+.
T Consensus       407 ~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        407 AAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             HHHHHHHHHHHHHhHHHH
Confidence            999999999987776554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=6.9e-33  Score=254.33  Aligned_cols=348  Identities=13%  Similarity=0.113  Sum_probs=255.2

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      ++++.++.+.++..++..+.....+....+        ++.+..+.+++.+.+.+++.+.+++.|+++||+||||+++.+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~   74 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKE--------LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIA   74 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHH
Confidence            456788899999999877776666666433        345567889999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      .++.+++.+.+.++++   .   ++.|+++|+ +.+...|...+++.|++|+|+|++++++.+....+|.++||.+++.+
T Consensus        75 ~~~~~~~~~~~~~~~~---~---~~~r~l~G~-~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         75 NGIKLLGCLLMLFGIH---P---LLAYGLVGI-GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHHHH---H---HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888877665   3   678999999 99999999999999999999999999999999999999999999887


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhH
Q 016048          165 ---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTF  241 (396)
Q Consensus       165 ---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (396)
                         .|+..+.+.+...++. .+..+.+||+++++++++       .+..  ..   .+       +.++..+.++++|.+
T Consensus       148 ~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~-------~~~~--~~---~~-------~~~~~~~~l~~~~~~  207 (393)
T PRK11195        148 ADPHAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQS-------WNPI--AL---LR-------DFFHACRVLWRDKLG  207 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccC-------CCHH--HH---HH-------HHHHHHHHHHhCchh
Confidence               3444555444443333 334467787654322100       0000  00   00       001111223355665


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHH
Q 016048          242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF  321 (396)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~  321 (396)
                      +.......+...........+|.|+++.+|.++.+.|......+++.+++. +..+++.||.++++.+..+.. .++...
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~-~~~~~l~~~~~~~~~~~~g~~-~~~~~~  285 (393)
T PRK11195        208 RFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGA-GAAARLVTLETVLRVLPAGIL-MGLVVL  285 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-HHHHHHhcCCcccchHHHHHH-HHHHHH
Confidence            554444444444445556667888888889999999999999999999999 677899999888887777753 334444


Q ss_pred             HHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCcc-chhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          322 LYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE-QGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       322 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      .+...++.+.... ..+.+++.+...+...+..++..|++. +|++.++.+..++++..++..+.+.+..
T Consensus       286 ~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~  355 (393)
T PRK11195        286 LMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK  355 (393)
T ss_pred             HHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4444444433333 445677777777778888888766554 7999999999999999999999986643

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.5e-32  Score=256.97  Aligned_cols=340  Identities=12%  Similarity=0.063  Sum_probs=240.6

Q ss_pred             hhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccC-chhHHHHHHHHHHHhhhccchh
Q 016048           44 SLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRS-RNFFYAYYVLRTLTAMVCEGSI  122 (396)
Q Consensus        44 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~  122 (396)
                      +.+..+.|+..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++++++. ..+++.+++.|++.|+ +.+..
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi-~~g~~  137 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGMG  137 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH-HHhcc
Confidence            777889999999999999999999999999999999999999999999988887641 1117888999999999 88888


Q ss_pred             hHHHHHHHhcCCCcccchhHHHHHHHhhhhhh-HHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 016048          123 HCLSLAYVADNVPPGRRASVFGIFSGIVSGAF-VCGTISARF----ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDL  197 (396)
Q Consensus       123 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~----~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~  197 (396)
                      .+.....+.|++|+|+|++++++.+.+.++|. ..+|+++..    .+||+.|++.+++.++..++..+++||+|++...
T Consensus       138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~  217 (452)
T PRK11273        138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL  217 (452)
T ss_pred             chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC
Confidence            88888889999999999999999999988886 445554322    2899999999888887777777888887654211


Q ss_pred             ccccccchhhhhhhhhhhhhhhhhhccCCChhHHh-hhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccc
Q 016048          198 YTPILSSKAEISASCEESTKKLQVFKRLPSIDDMV-HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ  276 (396)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  276 (396)
                      .+    .++. +++.++  +.+++++++.+.++.+ +.+.+++.++...+..++.....++...++|.|+++..|++..+
T Consensus       218 ~~----~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~  290 (452)
T PRK11273        218 PP----IEEY-KNDYPD--DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK  290 (452)
T ss_pred             CC----hhhh-hhcccc--ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            00    0000 000000  0000011112233322 23456788888888877777777788889999999988999888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhh--cchhHH-HHHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHhhhhhhhhhh
Q 016048          277 FADLMVIAGIAGTISQLIMMPVLAPTV--GEARLL-SFGLLFGCVHMFLYSVAW--SSWVPYA-AAVFSILSVFSHPCLR  350 (396)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~-~~~~~~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~  350 (396)
                      .+.......++.+++. ++.|+++||+  +||... .....+..++.+.+....  +.+.... ...++.......+...
T Consensus       291 ~~~~~~~~~~~~~~g~-~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  369 (452)
T PRK11273        291 SSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIG  369 (452)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHH
Confidence            8888888888898888 7789999998  444332 222223333333322221  1221211 2222332222223344


Q ss_pred             HHHhhccCCccchhHhhhHHHHHHHHHHh-hhhhhhhhhhccc
Q 016048          351 TIVSKQVASNEQGKAQGCISGICSFANLV-SPLAFSPLTGDCR  392 (396)
Q Consensus       351 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~~  392 (396)
                      .+..|.+|+++||+++|+.+...++|+.+ +|.+.|.+.|+.+
T Consensus       370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g  412 (452)
T PRK11273        370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  412 (452)
T ss_pred             HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence            56789999999999999999999988765 7999999998754

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.1e-32  Score=256.72  Aligned_cols=355  Identities=13%  Similarity=0.068  Sum_probs=240.5

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHH-HHHHHHhHHHHhhhhcccccccccCCchhhhH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSG-FQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      +....++++.+++.++...+.+..|.+.+|. +.++.+.+  ....+ .......+...+++++.|+++||+|||++++.
T Consensus        15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   91 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTF-FPAGNEFA--SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCchH--HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence            3455578899999999999999999886653 22222211  00000 11222234446788999999999999999999


Q ss_pred             HHHHhHHHHHHHHhccCchhHH--------HHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhH
Q 016048           84 PITLSIIPLAILAYSRSRNFFY--------AYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFV  155 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  155 (396)
                      +..+..++.++++++++   ++        .++++|+++|+ +.+...+....+++|++|+++|++++++.+...++|..
T Consensus        92 ~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         92 TLSIMASGTLLIAFVPG---YATIGLAAPLLVLLGRLLQGF-SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence            99999999999999998   55        46899999999 88888888899999999999999999999888877777


Q ss_pred             HHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhc
Q 016048          156 CGTISARF------------ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFK  223 (396)
Q Consensus       156 ~g~~~~~~------------~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  223 (396)
                      +++.++..            .+||+.|++...... .........||+++..+                    ++ +   
T Consensus       168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~-~~~~~~~~~~e~~~~~~--------------------~~-~---  222 (434)
T PRK15075        168 FAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVP-FIFLIRRSLEETEEFLA--------------------RK-H---  222 (434)
T ss_pred             HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHH-HHHHHHHhcCCCHHHHH--------------------hh-h---
Confidence            76666553            389999987544321 11111122222210000                    00 0   


Q ss_pred             cCCChhHHhhhhcCChhHHHH-HHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 016048          224 RLPSIDDMVHLLKSSPTFSQA-AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT  302 (396)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  302 (396)
                       +.+.++.++..++++..+.. ....++....++....+.|.|+++.+|++..+.+.......++.+++. ++.|++.||
T Consensus       223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~Dr  300 (434)
T PRK15075        223 -RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWL-PIGGALSDR  300 (434)
T ss_pred             -ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence             00111222222233333322 333334455566778889999998889999888888888888899988 777899999


Q ss_pred             hcchhHHHHHHHHHHHHHH-HHHH-hhhh--hHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHH-HH
Q 016048          303 VGEARLLSFGLLFGCVHMF-LYSV-AWSS--WVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FA  376 (396)
Q Consensus       303 ~g~~~~~~~~~~~~~i~~~-~~~~-~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g  376 (396)
                      ++||+....+..+..+... .+.. ....  ..... ..+.+++.+...+....+..|.+|+++|+++.|+.+.+.. ++
T Consensus       301 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~  380 (434)
T PRK15075        301 IGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIF  380 (434)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHH
Confidence            9999987766544432221 1111 1111  11112 2333555666667777889999999999999999766555 46


Q ss_pred             HHhhhhhhhhhhhcccC
Q 016048          377 NLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       377 ~~~~~~~~g~l~~~~~~  393 (396)
                      +.++|.+.|.+.|+.+.
T Consensus       381 g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        381 GGFTPAISTWLIHVTGD  397 (434)
T ss_pred             hhhHHHHHHHHHHhcCC
Confidence            88899999999998653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=2.3e-32  Score=253.32  Aligned_cols=354  Identities=15%  Similarity=0.197  Sum_probs=265.4

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +....+++..++..++.+...|.+|.+.++. +  .++.+....+.|++.+++.++..+++++.|+++||+|||+.+..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   90 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQL-G--VTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRS   90 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-C--CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHH
Confidence            4566678888999999999999999997652 1  111112223569999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      .++.+++.+++.++++   ++.+++.|++.|+ +.+ ..+....++.|+.|+++|+++++.......+|..++|.+++.+
T Consensus        91 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  165 (408)
T PRK09874         91 ALGMGIVMVLMGLAQN---IWQFLILRALLGL-LGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL  165 (408)
T ss_pred             HHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-hhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888888   8999999999998 654 5677888999999999999999999999999999999888764


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChh
Q 016048          165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT  240 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (396)
                          +||+.|++.+++.++..+..++.+||+++++++++                         +.+.++..+.+++++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~  220 (408)
T PRK09874        166 ADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE-------------------------MLHMREVVTSLKNPKL  220 (408)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh-------------------------hhHHHHHHHhCcCCch
Confidence                89999999988887777766677777543222000                         0011222333333333


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc---chhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH
Q 016048          241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKN---QFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC  317 (396)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  317 (396)
                      ....................+++.|..+..+....   ..+.+....++...++. +..+++.||++||+.+..+..+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~  299 (408)
T PRK09874        221 VLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSA-PRLGKLGDRIGPEKILITALIFSV  299 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhHHHHHHHHH
Confidence            33233333333444445566778887765332221   23455556677777777 666899999999999988888877


Q ss_pred             HHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          318 VHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       318 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ++.+......+.+.... .++.+++.+...|...+...+..|++++|+.+++.+....+|..++|.+.|.+.+...
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g  375 (408)
T PRK09874        300 LLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG  375 (408)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence            77766665555544433 4556777888888888999999999999999999999999999999999999988653

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=2.3e-32  Score=253.66  Aligned_cols=346  Identities=12%  Similarity=0.087  Sum_probs=261.0

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      ..+.+..++..+......+.+|.+        +++++.+..+.|+..+.+.+++.+++++.|+++||+|||+++..+..+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i--------~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~  100 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQF--------QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            445666677777778888888887        446788889999999999999999999999999999999999999999


Q ss_pred             hHHHHHHH---HhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH-
Q 016048           88 SIIPLAIL---AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF-  163 (396)
Q Consensus        88 ~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-  163 (396)
                      .+++.+++   .++++   ++.++++|+++|+ +.+...+..+.++.|+.|+++|.+.++..+..+.+|..+||.++.. 
T Consensus       101 ~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~-g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        101 YALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999875   45778   9999999999999 9999999999999998887777778999999999999998877642 


Q ss_pred             -----------------------------hhhHHHHHHHHHH-HHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhh
Q 016048          164 -----------------------------ISTSAAFQAATAG-SIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCE  213 (396)
Q Consensus       164 -----------------------------~~~~~~f~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~  213 (396)
                                                   .+||++|+....+ .++..+......||.+++++                 
T Consensus       177 ~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~-----------------  239 (438)
T PRK10133        177 ILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-----------------  239 (438)
T ss_pred             HhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-----------------
Confidence                                         1455566543333 33322222233444221110                 


Q ss_pred             hhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHh-hhhccccccchhhHHHHHHHHHHHHH
Q 016048          214 ESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYL-KAKFHFNKNQFADLMVIAGIAGTISQ  292 (396)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~  292 (396)
                         ++++..+..++.++.   + ++|.++...+..++......+...+.+.|+ ++.+|+++.+++..+....++.++++
T Consensus       240 ---~~~~~~~~~~~~~~l---l-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~  312 (438)
T PRK10133        240 ---SDAKQGSFSASLSRL---A-RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR  312 (438)
T ss_pred             ---ccccccchhhhHHHH---H-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence               000000000112222   2 567666666666666677777777888885 56679999999999999999999999


Q ss_pred             HHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHH
Q 016048          293 LIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGI  372 (396)
Q Consensus       293 ~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  372 (396)
                       +..+++.||+++|+++..+..+..+.+++....+..+......+.+++.+..+|..++...|..|+ +.+++.++.. .
T Consensus       313 -~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~  389 (438)
T PRK10133        313 -FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-M  389 (438)
T ss_pred             -HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-H
Confidence             778899999999999888877776666655554443333345667899999999999999999874 5788888886 4


Q ss_pred             HHHHHHhhhhhhhhhhhccc
Q 016048          373 CSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       373 ~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ...|+.++|.+.|.+.|..+
T Consensus       390 ~~~g~~~~~~i~G~l~~~~g  409 (438)
T PRK10133        390 TIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_pred             HhccchHHHHHHHHHHHhcc
Confidence            56789999999999988754

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=9e-32  Score=248.21  Aligned_cols=351  Identities=12%  Similarity=0.137  Sum_probs=253.4

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      +|++....++.++...+.+...+.+|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+||||++..
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~   83 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLK--------ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMI   83 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHH--------HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            466778888999999998888888888853        346777899999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHH---hc-cCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhh-HHHH
Q 016048           84 PITLSIIPLAILA---YS-RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAF-VCGT  158 (396)
Q Consensus        84 ~~~~~~~~~~~~~---~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~  158 (396)
                      +.++.+++.+++.   .. ++   ++.+++.|++.|+ +.+...+...+++.|+.|+|+|++++|+.+...++|. +++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~i~G~-g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~  159 (402)
T TIGR00897        84 GLLLWCVGHAAFIVFGLGHAN---YPLILLFYGIRGL-GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGS  159 (402)
T ss_pred             HHHHHHHHHHHHHHHhccCcc---HHHHHHHHHHHHc-chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988876553   22 35   7888899999999 8777777888899999999999999999999999996 5788


Q ss_pred             HHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhh
Q 016048          159 ISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHL  234 (396)
Q Consensus       159 ~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (396)
                      .+++.+    +|+..++.......+..++..+..+|.++++++++            +    +      +..+.++..+.
T Consensus       160 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~------~~~~~~~~~~~  217 (402)
T TIGR00897       160 YYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQT------------R----E------KFSELGKAATI  217 (402)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCcccccC------------C----c------chhhHHHHHHH
Confidence            887653    65555444433333333334344454322211000            0    0      00011111222


Q ss_pred             hcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHH-HHH
Q 016048          235 LKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS-FGL  313 (396)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-~~~  313 (396)
                      +.++|.++...+..++.....++...+.|.|.++ +|+++.+.+.......++..++. +..+++.||++||+.+. .+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~~~~~~  295 (402)
T TIGR00897       218 LFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFN-VIFGIVGDKLGWMNTVRWFGG  295 (402)
T ss_pred             HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHHHHHHH
Confidence            3467888877777777777778888899999866 69999998888888999999999 67789999999887653 333


Q ss_pred             HHHHHHHHHHHHh-----hhhhHH-HHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          314 LFGCVHMFLYSVA-----WSSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       314 ~~~~i~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                      ....++...+...     .+.+.. ...++.+.+.+...+ ......|. ++++||++.|+.+....+++.++|.+.|.+
T Consensus       296 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  373 (402)
T TIGR00897       296 VGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLF  373 (402)
T ss_pred             HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333332232221     122222 223444555554444 34556665 457899999999999999999999999999


Q ss_pred             hhccc
Q 016048          388 TGDCR  392 (396)
Q Consensus       388 ~~~~~  392 (396)
                      +|..+
T Consensus       374 ~~~~g  378 (402)
T TIGR00897       374 IGFFG  378 (402)
T ss_pred             Hhhcc
Confidence            98754

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=3.8e-32  Score=257.08  Aligned_cols=374  Identities=14%  Similarity=0.109  Sum_probs=256.1

Q ss_pred             HHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHH
Q 016048           14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLA   93 (396)
Q Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~   93 (396)
                      .+...++.....+.+|....+..-..+.+.+.+..+.|++.+++.++..+++++.|+++||+|||++++.+.++..++.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  116 (481)
T TIGR00879        37 GLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAI  116 (481)
T ss_pred             HHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            34455566677777777655521111223346678999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHH---HH----hhh
Q 016048           94 ILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA---RF----IST  166 (396)
Q Consensus        94 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~----~~~  166 (396)
                      ++.+..+...++.++++|+++|+ +.+...+...++++|++|+++|++++++.+....+|..+++.++   ..    .+|
T Consensus       117 ~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w  195 (481)
T TIGR00879       117 LMGLAAFALSVEMLIVGRVLLGI-GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW  195 (481)
T ss_pred             HHHHhccccchHHHHHHHHHHHh-hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccH
Confidence            98766553336789999999999 88999999999999999999999999999999999999999998   43    389


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCc---ccccc----cccchhhhhhhhh--------hhhhhhhhhccCCChhHH
Q 016048          167 SAAFQAATAGSIISAVYMRIFLPESVRDE---DLYTP----ILSSKAEISASCE--------ESTKKLQVFKRLPSIDDM  231 (396)
Q Consensus       167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~----l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  231 (396)
                      |+.|++.++..++.. ...+++||+|+..   ++.+.    .++..++.+++.+        ......+.+..+..+++.
T Consensus       196 ~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (481)
T TIGR00879       196 RIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSL  274 (481)
T ss_pred             HHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence            999999665555443 4457788876421   11110    0000000000000        000000111112224444


Q ss_pred             hhhhcC--ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHH
Q 016048          232 VHLLKS--SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLL  309 (396)
Q Consensus       232 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  309 (396)
                      ++..++  ++.++...+..+...........+.|.+.+ ..|++..+.+.......+..+++. ++.+++.||++||+.+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~~  352 (481)
T TIGR00879       275 FSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFT-FVAIFLVDRFGRRPLL  352 (481)
T ss_pred             HhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHH
Confidence            332221  122222222233333333344555566554 459998888888888899999999 7778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh---hh-------hh-HHHHHHHHHHhhh-hhhhhhhHHHhhccCCccchhHhhhHHHHHHHHH
Q 016048          310 SFGLLFGCVHMFLYSVA---WS-------SW-VPYAAAVFSILSV-FSHPCLRTIVSKQVASNEQGKAQGCISGICSFAN  377 (396)
Q Consensus       310 ~~~~~~~~i~~~~~~~~---~~-------~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~  377 (396)
                      ..+..+.+++++++...   ..       .. ......++..+.+ ...+....+..|.+|+++|+++.|+.+...++|+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~  432 (481)
T TIGR00879       353 LIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLAN  432 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHH
Confidence            88888877777766521   11       11 1122223333333 3346677788999999999999999999999999


Q ss_pred             Hhhhhhhhhhhhcc
Q 016048          378 LVSPLAFSPLTGDC  391 (396)
Q Consensus       378 ~~~~~~~g~l~~~~  391 (396)
                      +++|.+.+.+.++.
T Consensus       433 ~i~~~~~~~~~~~~  446 (481)
T TIGR00879       433 FIVGFLFPTMLESI  446 (481)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998864

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=6e-32  Score=248.66  Aligned_cols=348  Identities=11%  Similarity=0.070  Sum_probs=268.2

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      .+..++...++.++..++..|.+|.+        +++++.+..+.|++.+.+.+++.+++++.|++.||+|||+++..+.
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~--------~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~   75 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQF--------QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGL   75 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            35566777888888889999999998        5567888899999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      ++.+++.++...+...++++.+++.|++.|+ +.+...+....++.+..|+++|++.+++.+...++|..+||.++..+ 
T Consensus        76 ~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        76 FLYALGAFLFWPAAEIMNYTLFLVGLFILTA-GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHh-hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999886544211128999999999999 99999999999999999999999999999999999999998887644 


Q ss_pred             -----------------------------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhh
Q 016048          165 -----------------------------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEES  215 (396)
Q Consensus       165 -----------------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~  215 (396)
                                                   +||++|++.+++.++..++.. +.++++.++++                  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~------------------  215 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSD------------------  215 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccc------------------
Confidence                                         499999988887766544432 22222111110                  


Q ss_pred             hhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-cccccchhhHHHHHHHHHHHHHHH
Q 016048          216 TKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF-HFNKNQFADLMVIAGIAGTISQLI  294 (396)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~  294 (396)
                       +  ++.+..++.++    +.++|+++...+..++....+.+..++++.|.++.. +.+....+...........+++ +
T Consensus       216 -~--~~~~~~~~~~~----~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR-~  287 (410)
T TIGR00885       216 -A--KQISFSASLSR----LARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR-F  287 (410)
T ss_pred             -c--ccccchhhHHH----HHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH-H
Confidence             0  00000112222    225677777777777777777778888999987642 3344444555666667788899 7


Q ss_pred             HHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHH
Q 016048          295 MMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS  374 (396)
Q Consensus       295 ~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  374 (396)
                      +++++.||+++|+.+..+.....+..++....++....+...+.+.+.+..+|..++...+..+++.+..+.++...  .
T Consensus       288 ~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~  365 (410)
T TIGR00885       288 IGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--I  365 (410)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--H
Confidence            77899999999999988888888888887776665555557777888999999999999999986665444444443  3


Q ss_pred             HHHHhhhhhhhhhhhcc
Q 016048          375 FANLVSPLAFSPLTGDC  391 (396)
Q Consensus       375 ~g~~~~~~~~g~l~~~~  391 (396)
                      +|+.+.|.+.|.+.|..
T Consensus       366 ~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       366 IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             hccchHHHHHHHHHHHh
Confidence            99999999999999954

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=5.6e-32  Score=257.40  Aligned_cols=332  Identities=18%  Similarity=0.182  Sum_probs=243.6

Q ss_pred             CCcchhH---HHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhh
Q 016048           40 RDECSLA---IYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAM  116 (396)
Q Consensus        40 ~~~~~~s---~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  116 (396)
                      .+|++++   ..+.++..+++.++.++++++.|+++||+|||++++++.++.+++.++.+++++   ++.+++.|++.|+
T Consensus       116 ~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~  192 (505)
T TIGR00898       116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLVGM  192 (505)
T ss_pred             EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHh
Confidence            5677887   889999999999999999999999999999999999999999999999999999   9999999999999


Q ss_pred             hccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 016048          117 VCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-STSAAFQAATAGSIISAVYMRIFLPESVRDE  195 (396)
Q Consensus       117 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~  195 (396)
                       +.+...+...+++.|++|+++|+++.++...+..+|.+++|.++..+ +||+.|++.+++.++..+.. +++||+|+..
T Consensus       193 -~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~-~~~~esp~~l  270 (505)
T TIGR00898       193 -GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLS-WFVPESPRWL  270 (505)
T ss_pred             -hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HhcCCChHHH
Confidence             88998999999999999999999999999999999999999998766 79999999988877766555 7889988632


Q ss_pred             cc-------ccccccchhhhhh----hhhhhh--hhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhH
Q 016048          196 DL-------YTPILSSKAEISA----SCEEST--KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSM  262 (396)
Q Consensus       196 ~~-------~~~l~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (396)
                      ..       ++.+++..+.+..    +..+..  ++.++++++.+.++.+    ++|.++...+......+........+
T Consensus       271 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (505)
T TIGR00898       271 ISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLF----RTPNLRKTTLCLMMLWFTTAFSYYGL  346 (505)
T ss_pred             HHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHh----CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11       1111111110000    000000  0000111112344433    56666655554444333322222223


Q ss_pred             HHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhh--hHHHH-HHHHH
Q 016048          263 MYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS--WVPYA-AAVFS  339 (396)
Q Consensus       263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~-~~~~~  339 (396)
                      +.+.. ..+.+.   .......++..+++. ++.+++.||+|||+.+..+.++.+++.+++...++.  +.... ..+.+
T Consensus       347 ~~~~~-~~~~~~---~~~~~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  421 (505)
T TIGR00898       347 VLDLG-NLGGNI---YLDLFISGLVELPAK-LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGK  421 (505)
T ss_pred             hcccc-ccCCCh---HHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            33332 234432   233445667777777 667899999999999999998888888777765543  22222 33345


Q ss_pred             HhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhh
Q 016048          340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFS  385 (396)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g  385 (396)
                      ++....++..+.+..|.+|++.|+++.|+.+....+|++++|.+.+
T Consensus       422 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            5566777888999999999999999999999999999999999988

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=1e-31  Score=246.09  Aligned_cols=346  Identities=13%  Similarity=0.010  Sum_probs=266.6

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +....+.+..+..+.+.++..|.+|.+.+        +.+.+..+.|++.+++.+...++++++|+++||+|||+.....
T Consensus         4 ~~~~~l~~~~~~~~~~~~~~~p~l~~~l~--------~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~   75 (382)
T TIGR00902         4 QPFRWLALGFFGYFCAYGIFLPFFPAWLK--------GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRL   75 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34456778888889999999999999954        4577889999999999999999999999999999985433222


Q ss_pred             HH-HhHHHH-HHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           85 IT-LSIIPL-AILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        85 ~~-~~~~~~-~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                      .. ...+.. ..+..+++   ++.+++.|.++|. +.+...|...++..|+  +++|++.++......++|.+++|.+++
T Consensus        76 ~~~~~~l~~~~~~~~~~~---~~~l~~~~~l~~~-~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g  149 (382)
T TIGR00902        76 LALASAIFAAAFSAGAHN---AWLLFIAIGLFAL-FFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFG  149 (382)
T ss_pred             HHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHH
Confidence            11 111111 23446677   9999999999998 7777788888887765  478899999999999999999999887


Q ss_pred             Hh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCC
Q 016048          163 FI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS  238 (396)
Q Consensus       163 ~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
                      .+    +||..|++......+ .+.. +.++|+++++++++                   +++.++.++.++   .+ |+
T Consensus       150 ~l~~~~g~~~~f~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~---~l-~~  204 (382)
T TIGR00902       150 GLIGMFDEQNILAILTAGLAF-MLIG-FLIKPTIPPKDAIP-------------------EDESQGDSAFIA---LL-KN  204 (382)
T ss_pred             HHHHHcChhHHHHHHHHHHHH-HHHH-HHcCCCCCCCcccc-------------------ccccccchhHHH---HH-cC
Confidence            65    899998887655332 2222 33444322211000                   000011112233   23 67


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      |+++...+..++.........++.|.|+++ .|.++.+.|.......+..++.. ...+++.||+++|+.+..+.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHHHHHHHHHH
Confidence            888888888888888888888999999977 69999999999998888888887 7778999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHH-HHHHHHHhhhhhhhhhhhccc
Q 016048          319 HMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISG-ICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ....+...++.+..+. ..+-++..+...+....++++. |++++++++++++. ...+|..++|.++|.++|+.+
T Consensus       283 ~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       283 RWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998888777766555 5555888899999999999998 99999999999875 566999999999999999864

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-32  Score=237.27  Aligned_cols=350  Identities=14%  Similarity=0.122  Sum_probs=292.0

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      ++++.-.....+....+.+..|+.+.+        ++++++|..|.+++.++..+...+.-++.|.+.||+|.|++...+
T Consensus        14 ~~L~~S~~af~v~F~VW~l~s~l~~~i--------~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s   85 (417)
T COG2223          14 RNLWLSTLAFDVGFMVWTLFSPLGVFI--------KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILS   85 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHH
Confidence            455555666677777778888887777        578999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhh----hHHHHHH
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGA----FVCGTIS  160 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g----~~~g~~~  160 (396)
                      .++..+..+..+++.++++++++++++++.|+ + |+...+...++++++|||++|.++|+.. ..|+|    ..++|.+
T Consensus        86 ~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          86 MLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-A-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHHHHccCCchHHHHHHHHHHhc-c-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            99999999999999886667899999999998 5 5556789999999999999999999998 66666    4456777


Q ss_pred             HHHhh---hHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcC
Q 016048          161 ARFIS---TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKS  237 (396)
Q Consensus       161 ~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (396)
                      ....+   ||....+..+..++..+..++...|.|+.+.+.                       ++. .+  +-++.+++
T Consensus       163 ~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~-----------------------~~~-~~--~~~~~v~~  216 (417)
T COG2223         163 AVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV-----------------------KPQ-LP--AQLKAVFS  216 (417)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc-----------------------ccc-ch--hHHHHHhc
Confidence            77777   999988888888888888888888876632210                       000 00  22233447


Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC  317 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  317 (396)
                      +++.|.+.+.++.....+.++..++|.|++++||.++.+++.......+.+.+.+ ..+|+++||+|.+|++...+..++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsDR~Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALAR-PLGGWLSDRIGGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH-hccchhhhhccchhHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999 899999999999999999999988


Q ss_pred             HHHHHHHHhh-------hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          318 VHMFLYSVAW-------SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       318 i~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      ++..+.....       +...... .+.+++..+......+.++...+| ++.|.+.|+...++.+|+..-|...|..+|
T Consensus       296 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~  374 (417)
T COG2223         296 LAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLD  374 (417)
T ss_pred             HHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHH
Confidence            8888877654       1222222 344466677777888888888887 688999999999999999999999999998


Q ss_pred             cccC
Q 016048          390 DCRF  393 (396)
Q Consensus       390 ~~~~  393 (396)
                      ..++
T Consensus       375 ~tg~  378 (417)
T COG2223         375 LTGS  378 (417)
T ss_pred             hccc
Confidence            8763

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=1.6e-31  Score=242.85  Aligned_cols=333  Identities=14%  Similarity=0.110  Sum_probs=253.8

Q ss_pred             HHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHH
Q 016048           17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA   96 (396)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~   96 (396)
                      .........|.+|.+        .++++.+..+.|+..+.+.++..+++++.|+++||+||||++..+.++..++.+.+ 
T Consensus        12 ~~~~~~~~~~~lp~l--------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-   82 (355)
T TIGR00896        12 LRPALTSVGPLLPQI--------RSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-   82 (355)
T ss_pred             ccCccccCcccHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-
Confidence            333446678888888        55678888999999999999999999999999999999999999998888888777 


Q ss_pred             hccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh------hhHHHH
Q 016048           97 YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI------STSAAF  170 (396)
Q Consensus        97 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~------~~~~~f  170 (396)
                      .+++   ++.+++.|++.|+ +.+...+....++.|++| ++|+++++..+...++|..+++.+++.+      +||+.|
T Consensus        83 ~~~~---~~~l~~~~~~~g~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f  157 (355)
T TIGR00896        83 SAPG---TALLFAGTALIGV-GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQAL  157 (355)
T ss_pred             Hhcc---HHHHHHHHHHHHH-HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            6677   8889999999999 878777778888999886 6899999999999999998888776654      288888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHH
Q 016048          171 QAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFL  250 (396)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (396)
                      ...++..++..   ...+||.+++++++                      +++++.+.++.    .++|.++...+...+
T Consensus       158 ~~~~~~~~~~~---~~~~~~~~~~~~~~----------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~  208 (355)
T TIGR00896       158 AWWALPALLAL---LAWIPQVRRRVAAN----------------------QTTTRLTPVRI----WRSPLAWQVTVFFGL  208 (355)
T ss_pred             HHHHHHHHHHH---HHHhhhhccccCCC----------------------CCCCCCCCchh----hcCHhHHHHHHHHHH
Confidence            77665443322   23345543221100                      00001122222    256667666666666


Q ss_pred             HHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhh-cchhHHHHHHHHHHHHHHHHHHhhhh
Q 016048          251 SNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLSFGLLFGCVHMFLYSVAWSS  329 (396)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~i~~~~~~~~~~~  329 (396)
                      ....+.....++|.|+++ .|+++.+.+...+...++.++++ +..+++.||+ +||+.+..+..+..++...+.+.++.
T Consensus       209 ~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (355)
T TIGR00896       209 QSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASA-LLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH  286 (355)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence            666777778899999987 59999999999999999999999 7778999999 56667777777777777666655443


Q ss_pred             hHHHHHHHHHHhhhhhhhhhhHHHhhccC-CccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccCC
Q 016048          330 WVPYAAAVFSILSVFSHPCLRTIVSKQVA-SNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFS  394 (396)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  394 (396)
                      .......+++++.+..+|...+...+..+ ++++++..++.+...+++..++|.+.|.+.|+.++.
T Consensus       287 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~  352 (355)
T TIGR00896       287 GLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW  352 (355)
T ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33333556688888888887777665554 567799999999999999999999999999988654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=1.1e-31  Score=250.32  Aligned_cols=340  Identities=13%  Similarity=0.091  Sum_probs=238.8

Q ss_pred             hhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCc-hhHHHHHHHHHHHhhhccchh
Q 016048           44 SLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSR-NFFYAYYVLRTLTAMVCEGSI  122 (396)
Q Consensus        44 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~  122 (396)
                      +.+..+.|+..+++.++..+++++.|+++||+|||+.+..+.++.+++.++.++.++. .+++.+.+.|++.|+ +.+..
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~-~~g~~  135 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW-FQGMG  135 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-Hhhcc
Confidence            6777899999999999999999999999999999999999999999998887765321 126778899999999 88888


Q ss_pred             hHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 016048          123 HCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF-----ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDL  197 (396)
Q Consensus       123 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-----~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~  197 (396)
                      .+.....+.|++|+++|++++++.+...++|..+++.+.+.     .+||+.|++.+++.++..+..++.+||+|++.+.
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  215 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL  215 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence            88889999999999999999999999999998888766543     3799999999988888777777778887653221


Q ss_pred             ccccccchhhhhhhhhhhhhhhhhhccCCChhHHh-hhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccc
Q 016048          198 YTPILSSKAEISASCEESTKKLQVFKRLPSIDDMV-HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ  276 (396)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  276 (396)
                      ++ .++.+++..++.   .+  + .+.+.+.++.. +.+.+++.++...+..++.....++...+.|.|+++..|+++.+
T Consensus       216 ~~-~~~~~~~~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~  288 (438)
T TIGR00712       216 PP-IEEYRNDYPDDY---NE--K-AEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK  288 (438)
T ss_pred             CC-chhccccccccc---cc--c-cccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh
Confidence            10 000000000000   00  0 00111122221 22446778887777777777777788889999999888999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH---HHHHHHHHhh--hhhHHHH-HHHHHHhhhhhhhhhh
Q 016048          277 FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC---VHMFLYSVAW--SSWVPYA-AAVFSILSVFSHPCLR  350 (396)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~---i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~  350 (396)
                      .+.......+..++++ +..+++.||+++++....+.....   ++...+...+  +.+.... .+.++.+.........
T Consensus       289 ~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  367 (438)
T TIGR00712       289 SSWAYFLYEYAGIPGT-LLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIG  367 (438)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHH
Confidence            9999999999999999 777899999964332222222211   1222222211  1222111 2222322222222223


Q ss_pred             HHHhhccCCccchhHhhhHHHHHHHHH-Hhhhhhhhhhhhccc
Q 016048          351 TIVSKQVASNEQGKAQGCISGICSFAN-LVSPLAFSPLTGDCR  392 (396)
Q Consensus       351 ~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~~  392 (396)
                      ....|.+|+++||++.|+.+...++++ .++|.+.|.+.|+.+
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g  410 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  410 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence            467799999999999999999988875 689999999998753

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=6.9e-32  Score=253.94  Aligned_cols=334  Identities=10%  Similarity=0.029  Sum_probs=245.5

Q ss_pred             cchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhc--cCchhHHHHHHHHHHHhhhcc
Q 016048           42 ECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS--RSRNFFYAYYVLRTLTAMVCE  119 (396)
Q Consensus        42 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~  119 (396)
                      |++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++.++  .+   ++.+++.|+++|+ +.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~  145 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG---IALVVFCRVIQGL-AQ  145 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHH-hc
Confidence            788999999999999999999999999999999999999999999999998887554  45   7789999999999 99


Q ss_pred             chhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 016048          120 GSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLPESVRD  194 (396)
Q Consensus       120 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  194 (396)
                      +...+....++.|++|+++|++++++...+..+|..++|++++.+     +||+.|++.+++.++..++.+...+|+|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~  225 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI  225 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence            999999999999999999999999999999999999999887754     789999999988877776666666776653


Q ss_pred             cccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Q 016048          195 EDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNK  274 (396)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  274 (396)
                      +++.+   +.+++ ..+ +..++++++.+.+.++++.+    +++.++...+..++.....+....++|.|+++.+|++.
T Consensus       226 ~~~~~---~~~~~-~i~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~  296 (465)
T TIGR00894       226 HPCIS---KFEKK-YIN-SSLQGQKGSTRQSLPIKAIP----KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSG  296 (465)
T ss_pred             CCCCC---HHHHH-HHH-hhcccccCCCCCCCCHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh
Confidence            32110   00000 000 00000000111122344433    67888888888888888888888999999999899999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhH--------HHHHHHHHHHHHHH--HHHhh-hhhHHHH-HHHHHHhh
Q 016048          275 NQFADLMVIAGIAGTISQLIMMPVLAPTVGEARL--------LSFGLLFGCVHMFL--YSVAW-SSWVPYA-AAVFSILS  342 (396)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~--------~~~~~~~~~i~~~~--~~~~~-~~~~~~~-~~~~~~~~  342 (396)
                      .+.+...+...++..++. ++.|++.||+++|+.        +..+......+...  ..... +...... ..+.+.+.
T Consensus       297 ~~~g~~~~~~~~~~~i~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  375 (465)
T TIGR00894       297 KENGLLSSLPYLFAWLCS-IFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVS  375 (465)
T ss_pred             HHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            999999999999999999 778899998764321        11111111111111  11111 2222222 22223333


Q ss_pred             hhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          343 VFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       343 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      +...+.......|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.
T Consensus       376 ~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~  422 (465)
T TIGR00894       376 SGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQ  422 (465)
T ss_pred             hhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence            4444555556667776 5899999999999999999999999998764

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=4.8e-32  Score=247.49  Aligned_cols=343  Identities=15%  Similarity=0.163  Sum_probs=251.3

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      ..+..++..++.........|.+|.++       +++++.+..+.+++.+++.+++.+++++.|+++||+|||+.+..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   74 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMI-------KDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL   74 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHH-------HHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            455677788888888889999999643       3467888899999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhcc-CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH-
Q 016048           86 TLSIIPLAILAYSR-SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF-  163 (396)
Q Consensus        86 ~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-  163 (396)
                      ++..++.+++++++ +   ++.+++.|+++|+ +.+. .+....++.|++|+++|++++++.....++|..+++.++.. 
T Consensus        75 ~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        75 LLLAIPCLWAGLAVQS---YSVLLLLRLFIGI-AGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             HHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-hchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999999999998 8   9999999999999 7554 46678999999999999999999987777776666555432 


Q ss_pred             -------------hhhHHHH-HHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChh
Q 016048          164 -------------ISTSAAF-QAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSID  229 (396)
Q Consensus       164 -------------~~~~~~f-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (396)
                                   .+||+.| ...+++..+..++.....+|+|+++++++..+...      ...       ..+++..+
T Consensus       150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~  216 (366)
T TIGR00886       150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG------ARW-------SVGTGALG  216 (366)
T ss_pred             HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccccc------ccc-------cccchhHH
Confidence                         2699999 44455555555555566677654332111000000      000       00001111


Q ss_pred             HHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHH
Q 016048          230 DMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLL  309 (396)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  309 (396)
                      +..+.+ ++|.++...+..++..........+.|.|+++.+|+++.+.+.+.....+..++++ ++.+++.||+++|+..
T Consensus       217 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~  294 (366)
T TIGR00886       217 DQLKVF-RDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGGARKL  294 (366)
T ss_pred             HHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhccchhH
Confidence            222233 45666666666666666667778899999999899999999988888999999998 7778999999998877


Q ss_pred             HHHHHHHHHHHHHHHHhh----hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHH
Q 016048          310 SFGLLFGCVHMFLYSVAW----SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFA  376 (396)
Q Consensus       310 ~~~~~~~~i~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  376 (396)
                      ..+......+..++....    +.+.... ..+...+.+...+..++...+..| +++|+++|+.+..+++|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       295 LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            777666666555544322    2222222 333455566667778888888887 79999999999888765

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=3.9e-31  Score=243.58  Aligned_cols=344  Identities=13%  Similarity=0.106  Sum_probs=252.2

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      |.+...+...+....+.+...+.+|.+.        ++++.+..+.++..+.+.++..+++++.|+++||+|||+.+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~   74 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIA--------ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG   74 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence            3445567777788888888889999984        34567778999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      .++..++..++..+++   ++.+++.|+++|+ +.+...+...+++.|++|+++|+++++..+....+|..++|.+++.+
T Consensus        75 ~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473         75 AALFIIASLLCSLAET---SSLFLAGRFLQGI-GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988   8899999999999 88888889999999999999999999999999999999999888764


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChh
Q 016048          165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT  240 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (396)
                          +||+.|++.+++.++..++..+.+||+++++++++                         ....++..+.+ +++.
T Consensus       151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~-~~~~  204 (392)
T PRK10473        151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAA-------------------------SSKPRENSESL-LNRF  204 (392)
T ss_pred             HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCc-------------------------cchHHHHHHHH-hCHH
Confidence                79999999988888777766677787643321000                         00001111122 3444


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHH
Q 016048          241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM  320 (396)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~  320 (396)
                      ++.......+..........+.|.+.++.+|+++.+.+...+..++..+++. +..+++.||+++|+.+..+..+..++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~~~~~~~~~  283 (392)
T PRK10473        205 FLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVS-FSTPFALGIFKPRTLMLTSQVLFLAAG  283 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4443333333333333445566778888889999999999999999999999 677899999999999998888887777


Q ss_pred             HHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          321 FLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ..+......+.... ..+...+.+...+.  ....+..|.++|+   |..+....++..+++.+.+++.++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        284 ITLALSPSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77666544432222 23333333333333  3334455655443   33344455666666777777766543

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=5.7e-31  Score=242.12  Aligned_cols=343  Identities=15%  Similarity=0.148  Sum_probs=243.3

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhH-HHHhhhhcccccccccCCchhh-hH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGL-GTLVMMPLVGNLSDKYGRKALL-TV   83 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grk~~~-~~   83 (396)
                      +....++..++..++..+..|.+|.+..+       +++.+..+.|++.+...+ +..++.++.|+ +||+||||.+ ..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-------~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~   87 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTD-------EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVF   87 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHH
Confidence            45567888999999999999999998655       567778899999876655 55555555555 9999999875 45


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccc--hhHHHHHHHhhhhhhHHHHHHH
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRR--ASVFGIFSGIVSGAFVCGTISA  161 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~  161 (396)
                      +.+..+++..+.+++++   ++.+++.+.+.|. ..+...|...+++.|+.++++|  +...+..+.+.++|.++||+++
T Consensus        88 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~  163 (393)
T PRK15011         88 CCLLGVLACTLFAWNRN---YFVLLFVGVFLSS-FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA  163 (393)
T ss_pred             HHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence            66666677777888888   7777665555544 3456778888999998876655  3445788888999999999998


Q ss_pred             HHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcC
Q 016048          162 RFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKS  237 (396)
Q Consensus       162 ~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (396)
                      +.+    +||..|++.++..++..+..++.+||+++++++.+                       ++.+..++      +
T Consensus       164 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~------~  214 (393)
T PRK15011        164 YALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT-----------------------GTLEAPRR------N  214 (393)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc-----------------------cccccccc------c
Confidence            765    89999999988888777777777888754322100                       00000000      1


Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC  317 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  317 (396)
                      ++..+..................+.|.|+++.+|+++.+.+.+........+++. ++.|++.||++||+.+..+.....
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~~~~~~~~~~~~  293 (393)
T PRK15011        215 RRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKRFLMRVAAVAGV  293 (393)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHHH
Confidence            1222333333333344445556788999988889999888888877777777777 777899999999998777665555


Q ss_pred             HHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          318 VHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       318 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      +.+..+....+.+.... ..+.++..+...+....+..|..| +++|+++++.+...++|..++|.+.|.+.|+.
T Consensus       294 ~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~  367 (393)
T PRK15011        294 CFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW  367 (393)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54444433333333322 223344455555666677888888 56999999999999999999999999999864

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=3.6e-31  Score=244.44  Aligned_cols=342  Identities=16%  Similarity=0.151  Sum_probs=252.6

Q ss_pred             HHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHH
Q 016048           11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII   90 (396)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~   90 (396)
                      ....+...++..+..|.+|.+        .++++.+..+.++..+++.+++.++++++|+++||+|||++++.+.+++++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i--------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINV--------VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            344555666778999999987        345667778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hh
Q 016048           91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----ST  166 (396)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~  166 (396)
                      +.+++.++++   ++.++++|+++|+ +.+...+...+++.|++|+++|++++++......+|..+||.+++.+    +|
T Consensus        94 ~~~~~~~a~~---~~~l~~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw  169 (413)
T PRK15403         94 ACAATLFTTS---MTQFLIARFIQGT-SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW  169 (413)
T ss_pred             HHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            9999999999   9999999999999 77776777788999999999999999999999999999999888754    89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHH
Q 016048          167 SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAI  246 (396)
Q Consensus       167 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (396)
                      |+.|++.++..++..+..++.+||++++++++.                       +.+..+++..+ +.++|.++...+
T Consensus       170 ~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~-----------------------~~~~~~~~~~~-ll~~~~~~~~~l  225 (413)
T PRK15403        170 KVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPF-----------------------SAKSVLRDFRN-VFRNRLFLTGAA  225 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccccCCCC-----------------------ChHHHHHHHHH-HHcCHHHHHHHH
Confidence            999999998888776666667888754322100                       00001122222 236788887777


Q ss_pred             HHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHH-
Q 016048          247 VAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSV-  325 (396)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~-  325 (396)
                      ...+..........+.|.++++.+|+++.+.++.......+..++. .+.+++.+|..+++.......+..++..++.. 
T Consensus       226 ~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~  304 (413)
T PRK15403        226 TLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN-AIVARFVKDPTEPRFIWRAVPIQLVGLALLIVG  304 (413)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence            7777777677777788999999889999999998887888888877 44445544433433332222333333322221 


Q ss_pred             ---hhhhh--HHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          326 ---AWSSW--VPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       326 ---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                         ..+.+  ......+++.+.+...|...+..-+. .+..+|++.|+.+.....+...++...|++.++
T Consensus       305 ~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        305 NLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               12222  12234555677777777776533222 223479999999999999999999999988766

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=6e-31  Score=242.47  Aligned_cols=349  Identities=13%  Similarity=0.097  Sum_probs=256.8

Q ss_pred             CCccccchHHH---HHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCC
Q 016048            1 MEKKSGVSHLF---ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGR   77 (396)
Q Consensus         1 m~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr   77 (396)
                      |||+++...+.   ...++..+......|.+|.+        .++++.+..+.+++.+++.++..+++++.|+++||+||
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i--------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr   72 (394)
T PRK11652          1 MKRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADM--------ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR   72 (394)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhccHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC
Confidence            56665544443   44445556667888888888        44567888899999999999999999999999999999


Q ss_pred             chhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHH
Q 016048           78 KALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        78 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  157 (396)
                      |+++..+..+..++.++..++++   ++.+++.|++.|+ +.+...+....+..|.+++++|+++.+..+.+..++..++
T Consensus        73 r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (394)
T PRK11652         73 RPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGL-GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA  148 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988   9999999999999 8788788888899999999999999999999999999999


Q ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhh
Q 016048          158 TISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH  233 (396)
Q Consensus       158 ~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (396)
                      |.+++.+    +||+.|++.++..++..+...+..||++++++++                    +       +.++.++
T Consensus       149 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-------~~~~~~~  201 (394)
T PRK11652        149 PLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR--------------------T-------RVLASYR  201 (394)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch--------------------h-------HHHHHHH
Confidence            8888764    7999999988877766665556778765432200                    0       0111122


Q ss_pred             hhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHH
Q 016048          234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGL  313 (396)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  313 (396)
                      ...++|.++......+.............+.++++.+|+++.+.+.......++.+++. .+.+++.||.+++.......
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~~~~~~~~~~~~  280 (394)
T PRK11652        202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTLMWQSVIC  280 (394)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            22356666554444444444444445566778888789999988888888888888888 66678888887433322222


Q ss_pred             HH-HHHHHHHHHHh--hhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          314 LF-GCVHMFLYSVA--WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       314 ~~-~~i~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      .. ..+........  .+.+.... ..+.+.+.+...|...+...|..| +++|++.++.+....+|..+++.+.+.+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        281 CLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            22 22221111111  12222222 455577778888999999999887 688999999999999999999999887764


Q ss_pred             c
Q 016048          390 D  390 (396)
Q Consensus       390 ~  390 (396)
                      .
T Consensus       360 ~  360 (394)
T PRK11652        360 T  360 (394)
T ss_pred             C
Confidence            3

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=9.3e-32  Score=252.61  Aligned_cols=344  Identities=14%  Similarity=0.059  Sum_probs=238.7

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHh
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS   88 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~   88 (396)
                      ..+...++..++.....|.+|.+        .++++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~l--------~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~  111 (476)
T PLN00028         40 LSWISFFTCFVSTFAAAPLLPII--------RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            33445556666666667777777        4456788889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH-----
Q 016048           89 IIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF-----  163 (396)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-----  163 (396)
                      +++.++.+++++   ++.+++.|++.|+ +.+.. +....+++|++|+++|++++++.....++|..+++.+...     
T Consensus       112 ~~~~~~~~~~~s---~~~l~~~r~l~G~-~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~  186 (476)
T PLN00028        112 APAVFCMSLVSS---ATGFIAVRFFIGF-SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLI  186 (476)
T ss_pred             HHHHHHHHHhcC---HHHHHHHHHHHHH-HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998   8899999999998 76654 3456789999999999999999987666666655433321     


Q ss_pred             --------hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhh
Q 016048          164 --------ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLL  235 (396)
Q Consensus       164 --------~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (396)
                              .+||+.|++.+++.++..+..+++.+|.|+.+. +    +   . .        + +.+.++.+..+.++..
T Consensus       187 ~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~-~----~---~-~--------~-~~~~~~~~~~~~~~~~  248 (476)
T PLN00028        187 KDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY-R----E---L-K--------K-SGTMPKDSFSKVLRYG  248 (476)
T ss_pred             HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch-h----h---H-H--------h-cCccccccHHHHHHHH
Confidence                    379999999999888776666554444332210 0    0   0 0        0 0000011111222222


Q ss_pred             cCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchh-------H
Q 016048          236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR-------L  308 (396)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-------~  308 (396)
                      .++++.+...+..++.........+++|.|+.+.+|+++.+++.+.+..+++..+++ ++.|+++||++||+       .
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~~~r~~~~~r~~~  327 (476)
T PLN00028        249 VTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFAR-PAGGYLSDVAARRFGMRGRLWA  327 (476)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhcCcchhHHH
Confidence            245666666665555555556677788999988889999999999999999999999 77889999997651       2


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhh
Q 016048          309 LSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFS  385 (396)
Q Consensus       309 ~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g  385 (396)
                      ......+.++..+++....+.+.... ..+++++.....+..+++..+..| +++|++.|+.+..+.+|+.++|.+.+
T Consensus       328 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~  404 (476)
T PLN00028        328 LWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF  404 (476)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH
Confidence            22333333333333333333222222 334455555555666666666654 79999999998877777777776654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=3.5e-31  Score=244.05  Aligned_cols=350  Identities=13%  Similarity=0.071  Sum_probs=244.2

Q ss_pred             HHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHH
Q 016048           16 VHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAIL   95 (396)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~   95 (396)
                      .+.++.....+..+.+..+...+ .++...+........+...++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPP-SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555543211 11111212222223344455566789999999999999999999999999999999


Q ss_pred             HhccCchh-----HHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH-------
Q 016048           96 AYSRSRNF-----FYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF-------  163 (396)
Q Consensus        96 ~~~~~~~~-----~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-------  163 (396)
                      +++++...     .+.+++.|+++|+ +.+...+...+++.|++|+++|++..+..+.+..+|.++++.++..       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~  161 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGF-SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD  161 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHh-hccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            99988221     1257899999999 8888889999999999999999999999999999999999877643       


Q ss_pred             -----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCC
Q 016048          164 -----ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS  238 (396)
Q Consensus       164 -----~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
                           .+||+.|++.+++.++... .....||+++++++                    ++++++.+.+.++.+   +++
T Consensus       162 ~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~---~~~  217 (394)
T TIGR00883       162 DALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETPVFEKA--------------------QEKHKKKRGPIRETL---TKH  217 (394)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHHH--------------------HhccccccCCHHHHH---Hhc
Confidence                 3789999887766554433 33455665432210                    000111122333333   222


Q ss_pred             h-hHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH
Q 016048          239 P-TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC  317 (396)
Q Consensus       239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  317 (396)
                      + .++......++..........+.|.|.++.+|.++.+.+.......+...++. ++.+++.||++||+.+.....+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~  296 (394)
T TIGR00883       218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITI-PLSGALSDRIGRRPVLIIFTVLAA  296 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHHH
Confidence            2 35555555666666667778889999988889999999999999999999998 777899999999997765544433


Q ss_pred             HHH-HHH-HHh--hhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhH-HHHHHHHHHhhhhhhhhhhhcc
Q 016048          318 VHM-FLY-SVA--WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCI-SGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       318 i~~-~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      +.. ... ...  .+.+.... ..+.+++.+...+...+++.|.+|+++|+++.++. +....+|..++|.+.|.+.|+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~  376 (394)
T TIGR00883       297 LLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT  376 (394)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence            322 222 221  22222222 34456667778888999999999999999999985 4556688999999999999976


Q ss_pred             c
Q 016048          392 R  392 (396)
Q Consensus       392 ~  392 (396)
                      +
T Consensus       377 g  377 (394)
T TIGR00883       377 G  377 (394)
T ss_pred             C
Confidence            5

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=5.9e-31  Score=238.68  Aligned_cols=321  Identities=22%  Similarity=0.332  Sum_probs=279.7

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      ..+....+...++.....+..|.+.++        .+.+..+.+++.+.+.++..+++++.|+++||+|||+.+..+..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~   73 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAED--------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLL   73 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHH
Confidence            345677788888999999999998544        356778899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh---
Q 016048           88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI---  164 (396)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~---  164 (396)
                      ..++.+...++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++.+++.+...++|..++|.+++.+   
T Consensus        74 ~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  149 (352)
T cd06174          74 FALGSLLLAFASS---LWLLLVGRFLLGL-GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES  149 (352)
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHc-ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988   9999999999999 88999999999999999999999999999999999999999998876   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHH
Q 016048          165 -STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ  243 (396)
Q Consensus       165 -~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (396)
                       +||+.+++.++..++..+...+ .+                                                 |.++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------------------------------------~~~~~  179 (352)
T cd06174         150 LGWRWLFLILAILGLLLALLLLF-LL-------------------------------------------------RLLLL  179 (352)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-HH-------------------------------------------------HHHHH
Confidence             6899999888877776655422 22                                                 34555


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchh-HHHHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR-LLSFGLLFGCVHMFL  322 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~i~~~~  322 (396)
                      ..+..++..........+.|.+.++.+|.++.+.+.......++..++. ++.+++.||++||+ .+..+..+..++.+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  258 (352)
T cd06174         180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLLLAALGLLL  258 (352)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            6666677777778888899999998889999999999999999999999 77789999999999 999999998888888


Q ss_pred             HHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          323 YSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       323 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      +...++.+.... ..+.+.+.+...+...++..|..|+++|++.+|+.+....++..++|.+.|.+.|..
T Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~  328 (352)
T cd06174         259 LALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG  328 (352)
T ss_pred             HHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            887765444444 556688888899999999999999999999999999999999999999999999754

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=6.5e-31  Score=239.54  Aligned_cols=343  Identities=13%  Similarity=0.119  Sum_probs=258.8

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      |+++...+..++....+.+..|+.+.+.       +.++++|..|.+++.+++.+++.++.++.|++.||+|.|+++..+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~-------~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~  106 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLN-------KIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFS  106 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            4566667777777788888888877762       236889999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhc-----cCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHH--
Q 016048           85 ITLSIIPLAILAYS-----RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG--  157 (396)
Q Consensus        85 ~~~~~~~~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g--  157 (396)
                      .++.++..+..+++     ++   ++.+++.|++.|+ + +..++.....+++|+|+|+||+++|+.....++|..++  
T Consensus       107 ~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gi-g-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~  181 (462)
T PRK15034        107 TAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGF-A-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQL  181 (462)
T ss_pred             HHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHH-H-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999986     67   9999999999999 7 66788999999999999999999999976666666544  


Q ss_pred             --HHHHH------------------HhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhh
Q 016048          158 --TISAR------------------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTK  217 (396)
Q Consensus       158 --~~~~~------------------~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~  217 (396)
                        |.+..                  ..+||..+++..++.++..++.++..+|.++++                      
T Consensus       182 l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~----------------------  239 (462)
T PRK15034        182 VAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSR----------------------  239 (462)
T ss_pred             HHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc----------------------
Confidence              43321                  123677777777777776666666655433211                      


Q ss_pred             hhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHH
Q 016048          218 KLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMP  297 (396)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (396)
                              .+.++.++.+ |+|+.|...+.+++....+.++..++|.|.++.+  +............+...+.+ +++|
T Consensus       240 --------~~~~~~~~vl-k~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~r-plgG  307 (462)
T PRK15034        240 --------ASIADQLPVL-QRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIAR-SVGG  307 (462)
T ss_pred             --------cCHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHH-HhhH
Confidence                    1334444444 5788899999999988888889889999998865  33322223334566777777 7889


Q ss_pred             hhhhhhcchhHHHHHHHHHHHHHHHHHH-hh-----hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCC-----------
Q 016048          298 VLAPTVGEARLLSFGLLFGCVHMFLYSV-AW-----SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVAS-----------  359 (396)
Q Consensus       298 ~l~~~~g~~~~~~~~~~~~~i~~~~~~~-~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-----------  359 (396)
                      +++||+|+++++..+.+...++...... .+     +.+.... .+.+.+..+..+...+-++.+.+|+           
T Consensus       308 ~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~  387 (462)
T PRK15034        308 AISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG  387 (462)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence            9999999999998888777666543222 22     1122222 2223455666677777777777774           


Q ss_pred             ----------ccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          360 ----------NEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       360 ----------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                                ++.|.+.|+....+.+|+++-|.+.|...+..++
T Consensus       388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~  431 (462)
T PRK15034        388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGS  431 (462)
T ss_pred             chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCC
Confidence                      1678999999999999999999999999887654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=8.4e-31  Score=240.25  Aligned_cols=330  Identities=14%  Similarity=0.155  Sum_probs=246.1

Q ss_pred             hhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhc
Q 016048           19 FSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS   98 (396)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~   98 (396)
                      ++.++..|.+|.+.        ++++.+..+.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+++.++
T Consensus         5 ~~~~~~~p~~~~~~--------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~   76 (377)
T PRK11102          5 LAIDMYLPALPVIA--------ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA   76 (377)
T ss_pred             hHHHHHhccHHHHH--------HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            45667789999984        4567788899999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHH
Q 016048           99 RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAAT  174 (396)
Q Consensus        99 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~  174 (396)
                      ++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+    +||+.|++.+
T Consensus        77 ~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  152 (377)
T PRK11102         77 QT---IDQLIYMRFLHGL-AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA  152 (377)
T ss_pred             cc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence            98   8999999999999 88888889999999999999999999999999999999999888764    8999999988


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHh
Q 016048          175 AGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLA  254 (396)
Q Consensus       175 ~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (396)
                      ++.++..++..+.+||+++++++++.                      +.++..++..+.+ ++|..+...+...+....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  209 (377)
T PRK11102        153 LAAILAAALVFFFIPETLPKERRQPF----------------------HLRTTIRNFASLF-RHKRVLGYMLASGFSFAG  209 (377)
T ss_pred             HHHHHHHHHHHHhCCccCcccccCCC----------------------ChHHHHHHHHHHH-cChHHHHHHHHHHHHHHH
Confidence            88877776666777876543221000                      0000011112222 456665555555555555


Q ss_pred             hhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH---Hhh-hhh
Q 016048          255 DAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS---VAW-SSW  330 (396)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~---~~~-~~~  330 (396)
                      ......+.|.++.+.+|+++.+.+.......+..+++. +..+++.||+|+|+.+..+..+..+..+.+.   ..+ +.+
T Consensus       210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (377)
T PRK11102        210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT-IINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFW  288 (377)
T ss_pred             HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            55556667778888889999999999999999999999 7778999999999988887765443322222   111 122


Q ss_pred             HHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHH-HHHHhhhhhhh
Q 016048          331 VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FANLVSPLAFS  385 (396)
Q Consensus       331 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~~~g  385 (396)
                      .... ..+...+.+...+.......|..| +++|+++++.+.... +|..+++.+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        289 ALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222 222333344445555666777776 899999999877654 66666666543

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=1.1e-30  Score=241.37  Aligned_cols=338  Identities=17%  Similarity=0.125  Sum_probs=254.3

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHh
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS   88 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~   88 (396)
                      .+.+...+..++.+++.|.+|.+        .++++.+..+.|+..+++.++..++++++|+++||+|||+.+..+..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~p~~~~i--------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   81 (401)
T PRK11043         10 YLAGLSMLGFLATDMYLPAFKAI--------QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLF   81 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHH--------HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHH
Confidence            34445666777888888988887        4456778889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----
Q 016048           89 IIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----  164 (396)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----  164 (396)
                      .++.+++.++++   ++.+++.|+++|+ +.+...+...+++.|++|++++++..+.......+|..++|.+++.+    
T Consensus        82 ~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  157 (401)
T PRK11043         82 ALGSLGMLWVES---AAQLLVLRFVQAV-GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF  157 (401)
T ss_pred             HHHHHHHHHhcC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999998   9999999999999 77777778889999999999999999998888888888888888764    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHH
Q 016048          165 STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQA  244 (396)
Q Consensus       165 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (396)
                      +||+.|++.++..++..+.. +.++|+++++++                        ++++.++++.   + ++|.++..
T Consensus       158 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------------------~~~~~~~~~~---~-~~~~~~~~  208 (401)
T PRK11043        158 GWQAIFATLFAITLLLILPT-LRLKPSKKARKQ------------------------SQDALTFKQL---L-KSKTYLGN  208 (401)
T ss_pred             ChHHHHHHHHHHHHHHHHHH-HHcCCCCCcccc------------------------chHHHHHHHH---H-cChhHHHH
Confidence            89999998888777765554 445554322110                        0000112222   2 45555544


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 016048          245 AIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS  324 (396)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  324 (396)
                      .+...+....+.....+.|.+.++ +|+++.+.+.......++..++. +..+++.||+++|+..........++...+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~-~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~  286 (401)
T PRK11043        209 VLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGG-YGCRAALQKWGGEQLLPWLLVLFAVSVIAIW  286 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            444444444555666778888765 59999988988887888888888 6778999999988876555544444433222


Q ss_pred             ---Hh--hhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          325 ---VA--WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       325 ---~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                         ..  ++.+.... ..+.+.+.+..+|...+...|..| +++|++.|+.+..+..+...++.+.|.+.|.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        287 LASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence               21  12222222 344566777888888888777776 6899999999999999999999999988774

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=3.5e-31  Score=247.42  Aligned_cols=342  Identities=13%  Similarity=0.064  Sum_probs=247.2

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHH-HHHHHhhhc
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYV-LRTLTAMVC  118 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~  118 (396)
                      .++++.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++   ++.+++ .|++.|+ +
T Consensus        46 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~-~  121 (455)
T TIGR00892        46 QQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGL-G  121 (455)
T ss_pred             HHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHh-c
Confidence            4567788889999999999999999999999999999999999999999999999999988   777764 5799999 8


Q ss_pred             cchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 016048          119 EGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRD  194 (396)
Q Consensus       119 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  194 (396)
                      .+...+...+++.|+++ ++|+++.++.+.+..+|..++|.+++.+    +||+.|++.+++.++..+..++..|+.+.+
T Consensus       122 ~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~  200 (455)
T TIGR00892       122 LAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ  200 (455)
T ss_pred             chhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            77766777788899996 7899999999999999999998887754    899999999988776655544444432221


Q ss_pred             cccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Q 016048          195 EDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNK  274 (396)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  274 (396)
                      +..++...  +..+.+...+..+.+...++..+..+ ++.+ ++|.++......++....+.....++|.|.++ .|+++
T Consensus       201 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~  275 (455)
T TIGR00892       201 RVSKSKSK--EGLPPDGSTKKLSKKSTAEKINRFLD-FSLF-THRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDE  275 (455)
T ss_pred             cccccccc--ccCCCCCccccccccchhhhhhhhcc-hHHh-cCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCH
Confidence            11000000  00000000000000000000011111 1223 56778777777777777777778889999876 59999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhhh--cchhHHH--HHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhh
Q 016048          275 NQFADLMVIAGIAGTISQLIMMPVLAPTV--GEARLLS--FGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCL  349 (396)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  349 (396)
                      .+.+...+..+++.++++ +..+++.||.  ++|+...  .+....+++.++.....+.+.... .++.+++.+...+..
T Consensus       276 ~~~g~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~  354 (455)
T TIGR00892       276 YEAAFLLSIIGFVDIFAR-PSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALL  354 (455)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHH
Confidence            999999999999999998 6778999873  3333332  233333444444444444444333 556677888888889


Q ss_pred             hHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          350 RTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       350 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .+++.|.+|++++++++|+.+...++|+.++|.++|.+.|...
T Consensus       355 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       355 FEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence            9999999999999999999999999999999999999998754

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.6e-31  Score=253.92  Aligned_cols=373  Identities=14%  Similarity=0.168  Sum_probs=258.1

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      .+..+++..++..++.....+.+|.+        .++++.+..+.+++.+.+.+++.+++++.|+++||+|||+.+..+.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   92 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEV--------QGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI   92 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            34466778888888888888888887        3456778889999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      ++.+++.++.+++++   ++.+++.|++.|+ +.+...+....++.|++|+++|+++++......++|..++|.+++.+ 
T Consensus        93 ~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893         93 VLFSVGTLACGFAPG---YWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988   9999999999999 88888899999999999999999999999999999999999888765 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhh---hhhhhhhhh------------hhhhccCC
Q 016048          165 ---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEIS---ASCEESTKK------------LQVFKRLP  226 (396)
Q Consensus       165 ---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~---~~~~~~~~~------------~~~~~~~~  226 (396)
                         +||+.|++..+..++ .+.....+||+++.+++++...+.++..+   ..++.....            ........
T Consensus       169 ~~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (496)
T PRK03893        169 PVWGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQN  247 (496)
T ss_pred             ccCCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence               799999875443333 33333456665432111000000000000   000000000            00000000


Q ss_pred             ChhH-------------H-hhh-hcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHH
Q 016048          227 SIDD-------------M-VHL-LKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTIS  291 (396)
Q Consensus       227 ~~~~-------------~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  291 (396)
                      .+.-             . .+. .++.+.........+...........++|.|+++.+|+++.+.+.+.+...++.+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g  327 (496)
T PRK03893        248 AAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVG  327 (496)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence            0000             0 000 000111111111111111112234578899998778999999999999999999999


Q ss_pred             HHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhh--hHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhh
Q 016048          292 QLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS--WVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC  368 (396)
Q Consensus       292 ~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  368 (396)
                      . ++.+++.||+++|+.+..+..+..+..+.+....+.  +.... .++.+.......+...+++.|.+|+++||+++|+
T Consensus       328 ~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  406 (496)
T PRK03893        328 C-CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGF  406 (496)
T ss_pred             H-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccch
Confidence            9 777899999999998887776665554443332221  11111 1222223333456677889999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccc
Q 016048          369 ISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       369 ~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .+....+|..++|.+.|.+.|+.+
T Consensus       407 ~~~~~~~g~~lgp~l~g~l~~~~g  430 (496)
T PRK03893        407 TYNVGALGGALAPILGALIAQRLD  430 (496)
T ss_pred             hhhhhhHHHHHHHHHHHHHhccCC
Confidence            999999999999999999998754

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.8e-30  Score=233.29  Aligned_cols=338  Identities=20%  Similarity=0.237  Sum_probs=251.1

Q ss_pred             HHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHH
Q 016048           48 YLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSL  127 (396)
Q Consensus        48 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  127 (396)
                      ...+.+.+++.+|.++|++..|.++||+|||..+.++.++..++.++..++...+.+++++++|++.|+ ..+.......
T Consensus        60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl-~~gl~~~~~p  138 (485)
T KOG0569|consen   60 LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGL-ACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HhHHHHHHHH
Confidence            456899999999999999999999999999999999999999888888877655559999999999999 8899999999


Q ss_pred             HHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH--h----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----cc
Q 016048          128 AYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF--I----STSAAFQAATAGSIISAVYMRIFLPESVRD-----ED  196 (396)
Q Consensus       128 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~--~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~-----~~  196 (396)
                      .|+.|..|++.||......+.+..+|.+++..++.-  +    .|++.+....+++++..+.. .++||+|+.     ++
T Consensus       139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~Ll~~k~~  217 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKYLLIKKGD  217 (485)
T ss_pred             HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcchHHHHcCC
Confidence            999999999999999999999999999998666532  2    58888888888777766644 889999972     22


Q ss_pred             c---ccccccchhhh--hhhhhhh-hh---hhhhhccCCChhHHhhhhcCChhHHHH----HHHHHHHHHh-hhhhhhhH
Q 016048          197 L---YTPILSSKAEI--SASCEES-TK---KLQVFKRLPSIDDMVHLLKSSPTFSQA----AIVAFLSNLA-DAGLQGSM  262 (396)
Q Consensus       197 ~---~~~l~~~~~~~--~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~  262 (396)
                      +   ++.++..+.++  +++.+++ ++   ++.+++++.++++.+    +++..+.-    +...+.+.+. ......+.
T Consensus       218 ~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~----~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Ys  293 (485)
T KOG0569|consen  218 EEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLL----KNPTLRRPLLIGIVVSFAQQFSGINAIFFYS  293 (485)
T ss_pred             HHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHh----cCcchhHHHHHHHHHHHHHHhcCcceeHHHH
Confidence            2   33444433332  2222111 11   111122445666765    34333332    2233333332 23333333


Q ss_pred             HHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh------hhHHHH--
Q 016048          263 MYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS------SWVPYA--  334 (396)
Q Consensus       263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~--  334 (396)
                      ..++++ .|++..++.+.....++..++.+ +++.++.||.|||+++..+..++.+..+++.....      .|..+.  
T Consensus       294 t~i~~~-aG~~~~~a~~an~~~g~v~~~~t-~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i  371 (485)
T KOG0569|consen  294 TSIFKT-AGFTPEEAQYANLGIGIVNLLST-LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCI  371 (485)
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            444444 49999999999999999999999 88889999999999999999998888777664321      222221  


Q ss_pred             --HHHHHHhh-hhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          335 --AAVFSILS-VFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       335 --~~~~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                        .++..+.+ .+..|..+-+.+|++|++.|+.++++....+++.+++-...+.++.+..+.
T Consensus       372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~  433 (485)
T KOG0569|consen  372 AAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP  433 (485)
T ss_pred             HHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              22223333 345789999999999999999999999999999999999999888876653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=1.9e-30  Score=242.25  Aligned_cols=357  Identities=15%  Similarity=0.191  Sum_probs=292.6

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      +.+.+..++.+..++.++..+....++.++.+        ..-|+...+++.++..+..++.+++.|.++||++|||+++
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~--------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ--------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            45678889999999999999999999988655        3455678999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHhc--cCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHH
Q 016048           83 VPITLSIIPLAILAYS--RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTIS  160 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  160 (396)
                      .+.++.++..+..++.  .+..+.+.+++.-++.|+ +.+...|+.++++.|..|+|+..+++++.+...++..++||.+
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~-~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal  158 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI-GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL  158 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence            9998877655444432  222238889999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhc
Q 016048          161 ARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK  236 (396)
Q Consensus       161 ~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (396)
                      +|.+    |-.+.|.+.++..++..... ...+.++++++                      .+.++.....++.++.++
T Consensus       159 gG~Lva~~G~~~~f~inalsfl~~i~~l-~~~~~~~~~~~----------------------~~~e~~~~~l~~G~ryv~  215 (524)
T PF05977_consen  159 GGILVAFFGAAAAFLINALSFLISILAL-LRWKPPPPPSS----------------------LPRERFFSALREGLRYVR  215 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccccccccc----------------------cchhhhhhhHHHHHHHHh
Confidence            9875    66788888877666554433 33333221111                      011122345777788888


Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG  316 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  316 (396)
                      ++|.++..++..++..+........+|.+.++.+|.++...|++.+..+++.+++. ++.+++.+|+++++++..+.+..
T Consensus       216 ~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Ga-l~~~~l~~~~~~~~lv~~~~~~~  294 (524)
T PF05977_consen  216 SSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGA-LLLPRLRRRLSSRRLVLLASLLF  294 (524)
T ss_pred             cchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcchhhHHHHHHH
Confidence            88888877776666666666667788999999999999999999999999999999 66778999999999998999999


Q ss_pred             HHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          317 CVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       317 ~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      +++++.+++.++.+.... .++.|.+.........+..++..|++.||++++++++....+..+|..+.|.+.|+.+
T Consensus       295 a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g  371 (524)
T PF05977_consen  295 ALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG  371 (524)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            998888888887776555 5555777888888889999999999999999999999999999999999999998764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.6e-33  Score=243.14  Aligned_cols=360  Identities=16%  Similarity=0.185  Sum_probs=261.1

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +.+..+++...+...+.+.+..+.+..        ++.++.+.+..|++++.+.+.+++.+|+.|+++|||+||+++.++
T Consensus        33 ~~l~il~~vnlmny~Dr~~iagv~~~v--------~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG  104 (493)
T KOG1330|consen   33 LTLVILCLVNLMNYADRYTIAGVLKEV--------QTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG  104 (493)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHH--------HHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence            345667888888888888887776666        667888889999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      ..++.++.+.++++..   ||+++++|.+.|+ |.+...|+.+++++|.+|+++|++++++++....+|..+|.+.+..+
T Consensus       105 ~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v  180 (493)
T KOG1330|consen  105 IFIWTLAVFASGFSNH---FWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV  180 (493)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHhcc-chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence            9999999999999977   9999999999999 99999999999999999999999999999999999988887777654


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCCh
Q 016048          165 -----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP  239 (396)
Q Consensus       165 -----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (396)
                           .|||.|+..+++.+++.++..++.+|++++++++.               +.+.+..++....++|..... +++
T Consensus       181 a~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~---------------~~~~~~~~~~ts~~kDl~~l~-~~~  244 (493)
T KOG1330|consen  181 ASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV---------------DGENKMVKPFTSVWKDLKVLA-KIK  244 (493)
T ss_pred             ccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc---------------ccCCcCCCCccchHHHHHHHH-ccC
Confidence                 49999999999999999999899998876432100               000111122333455554444 345


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHhh---hhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcc----hhHHHHH
Q 016048          240 TFSQAAIVAFLSNLADAGLQGSMMYYLK---AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE----ARLLSFG  312 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~----~~~~~~~  312 (396)
                      .+....+......+....+..+.|.+..   +..|++..+..++..+...++.+|. +++|.++||+.|    .......
T Consensus       245 v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGv-l~Ggiisd~~~~~~~~~~~~~~~  323 (493)
T KOG1330|consen  245 VFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGV-LFGGIISDKLSRIFPNSGTLRAS  323 (493)
T ss_pred             ceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhh-eehHHHHHHHHHhcccccchhHH
Confidence            5554455554444444444445554433   2336677776777777888888888 788899998432    1222222


Q ss_pred             HHHHHHH-------HHHHHHhhh--hhHHHHHHHHHHhhhh-hhhhhhHHHhhccCCccchhHhhhHHHHHH-HHHHhhh
Q 016048          313 LLFGCVH-------MFLYSVAWS--SWVPYAAAVFSILSVF-SHPCLRTIVSKQVASNEQGKAQGCISGICS-FANLVSP  381 (396)
Q Consensus       313 ~~~~~i~-------~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~  381 (396)
                      .+..+.+       +.+......  .+..++.++++..... ......-+..|.+|+++|.++.++...+.. +|.+-+|
T Consensus       324 q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p  403 (493)
T KOG1330|consen  324 QLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASP  403 (493)
T ss_pred             HHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCc
Confidence            2222221       222221111  2222333444443333 345666778899999999999999998877 5666666


Q ss_pred             hhhhhhhhcccC
Q 016048          382 LAFSPLTGDCRF  393 (396)
Q Consensus       382 ~~~g~l~~~~~~  393 (396)
                      .+.|.+.|+..+
T Consensus       404 ~ivGilsd~l~g  415 (493)
T KOG1330|consen  404 YIVGILSDKLRG  415 (493)
T ss_pred             ceehhHHHHhhC
Confidence            699999987543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.98  E-value=9.1e-31  Score=223.07  Aligned_cols=358  Identities=19%  Similarity=0.289  Sum_probs=248.7

Q ss_pred             cccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCc
Q 016048           22 SMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSR  101 (396)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~  101 (396)
                      +-..|.....+.+......++.+.+....|++.+.+.+.+.+.++.+|.++||+|||+++++++...+++..+.+.+.| 
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~-  120 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN-  120 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH-
Confidence            4444454444444222223333467788999999999999999999999999999999999999999999999999999 


Q ss_pred             hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHhhh------HHHHHHH--
Q 016048          102 NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIST------SAAFQAA--  173 (396)
Q Consensus       102 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~------~~~f~~~--  173 (396)
                        +..+++.|++.|+ ..+.. ....++++|+.++|+|++.++.++..+++|.++||.+|+++..      +.+|...  
T Consensus       121 --F~afv~aR~l~Gi-~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~  196 (451)
T KOG2615|consen  121 --FAAFVLARFLGGI-FKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCL  196 (451)
T ss_pred             --HHHHHHHHHhhhh-ccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHH
Confidence              9667777999999 76655 5789999999999999999999999999999999999998743      2233332  


Q ss_pred             --HHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCCh------hHHHHH
Q 016048          174 --TAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP------TFSQAA  245 (396)
Q Consensus       174 --~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  245 (396)
                        .+....-.....+++||+-+.+++.+   + +.+..+.. +++  ++..+  .++..-...+++.|      .+....
T Consensus       197 ~v~i~a~~~v~~~~~~lpETL~~rk~~~---~-~~~~~~~~-~~~--~~~~~--~~~~~~v~~lrn~p~~~~i~~~~i~~  267 (451)
T KOG2615|consen  197 LVFILAAGDVTFFPWFLPETLPLRKRND---E-HSTLQEAA-DDR--LALLK--FARIFKVAALRNPPLLDFISVLRIFG  267 (451)
T ss_pred             HHHHHHHHHHHHHHHhCCccccchhhcc---c-ccchhhhh-hhh--hhhcc--hhhhhhhhhhcCccccchHHHHHHHH
Confidence              22222212334578999865544320   0 00000000 000  00000  00111111122111      122334


Q ss_pred             HHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhc--chhHHHHHHHHHHHHHHHH
Q 016048          246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG--EARLLSFGLLFGCVHMFLY  323 (396)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~i~~~~~  323 (396)
                      +..+.+...+.+.....+.+..+.+|+++.+.|.+++..++...+.+.... ...||..  .+-.+..+..++.-.++++
T Consensus       268 l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~-~~l~~~~~~~~a~l~~~l~~~vP~~lll  346 (451)
T KOG2615|consen  268 LHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALV-PILPRYKGNIKAVLLFSLLLIVPAFLLL  346 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcc-ccccccccchhhHHHHHHHHHHHHHHHH
Confidence            445555555555665566666678899999999999999999999994443 4556544  4445555666666666666


Q ss_pred             HHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccCC
Q 016048          324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFS  394 (396)
Q Consensus       324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  394 (396)
                      .....+..... ..+..+......+....++.+..|+++||+++|+....+.++.++||.+.|.+..|...+
T Consensus       347 s~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~  418 (451)
T KOG2615|consen  347 SLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGA  418 (451)
T ss_pred             hccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCC
Confidence            66666555544 444566677778889999999999999999999999999999999999999999886543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.98  E-value=5.2e-30  Score=234.95  Aligned_cols=340  Identities=15%  Similarity=0.054  Sum_probs=253.2

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCc----hhhhHH
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRK----ALLTVP   84 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk----~~~~~~   84 (396)
                      ......+...++.++..|.+|.+.+|        .+.|..+.|++.+++.++..++++++|+++||+|||    +.+.+.
T Consensus         8 ~~~~~~~~~~~~~g~~~p~l~~~l~~--------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~   79 (382)
T PRK11128          8 WLALSYFGYFFAYGVFLPFWSVWLKG--------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALL   79 (382)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHh--------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHH
Confidence            34445667778889999999999644        467789999999999999999999999999999994    333322


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      ....  .......+++   +|.+++.|++.|+ +.+...|...++..|+  +++|+++++......++|..+||++++.+
T Consensus        80 ~~~~--~~~~~~~~~~---~~~l~i~~~l~g~-~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l  151 (382)
T PRK11128         80 TLLF--AVAFWFGAHS---FWLLFVAIGLFNL-FFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKL  151 (382)
T ss_pred             HHHH--HHHHHHhccc---HHHHHHHHHHHHH-HHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            2221  2223344566   8999999999998 7788888888888876  36678888888888899999999999875


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChh
Q 016048          165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT  240 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (396)
                          +||..|++.++..++..+ ..+..||++++++++                    ++.++...++++    +.|+|.
T Consensus       152 ~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~----i~~~~~  206 (382)
T PRK11128        152 VSWFGEQAILWILTAGVASMLL-GQLLRPTIMPQGESR--------------------QQESAGWPAWKA----LLKEPT  206 (382)
T ss_pred             HHHcChhHHHHHHHHHHHHHHH-HHHccCCCCCccccc--------------------cccccccchHHH----HHcChh
Confidence                899999887765444333 334445532221100                    000011123333    336778


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHH
Q 016048          241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM  320 (396)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~  320 (396)
                      ++...+..++..........+.|.|+++ .|.++.+.+.+.....+..++.. ...+++.||+++|+.+..+....+++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIF-AFSNRLFRRWSARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            8777777776666677777888999866 69999999999998888888888 677899999999999999998888888


Q ss_pred             HHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHH-HHHHHHhhhhhhhhhhhccc
Q 016048          321 FLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGI-CSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~~  392 (396)
                      +++...++.+..+. .++.+++.+...+....+..+. +++++++.++..+.. ..+|..++|.+.|.++|+.+
T Consensus       285 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g  357 (382)
T PRK11128        285 GLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG  357 (382)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            87777776665544 4555777777788888888886 567779999988744 56788999999999999864

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.98  E-value=1.3e-30  Score=239.24  Aligned_cols=338  Identities=15%  Similarity=0.117  Sum_probs=270.0

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhcc
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCE  119 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  119 (396)
                      +.+++.+..+.|++.+.+..|+++++.+.|+++||+|-|+++..+.++.++++++...+.+.+ ++.+++.|+++|+ +.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl-~~  142 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGL-GQ  142 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHH-HH
Confidence            457889999999999999999999999999999999999999999999999999999886644 5678999999999 99


Q ss_pred             chhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 016048          120 GSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLPESVRD  194 (396)
Q Consensus       120 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  194 (396)
                      +...|+...+.++|.|++||++..++...+..+|.+++.++++.+     ||+.+|++.++++++..++..++..|+|.+
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            999999999999999999999999999999999999988888765     899999999999999988877778888776


Q ss_pred             cccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Q 016048          195 EDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNK  274 (396)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  274 (396)
                      ++...   +.|.  +.-++...+++.+++.+.++++++    +++.++...+..++.....+.+..+.|.|+++.+|++.
T Consensus       223 h~~is---~~El--~~I~~~k~~~~~~~~~~vP~~~i~----ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v  293 (466)
T KOG2532|consen  223 HPNIS---EKEL--KYIEKGKSEAHVKKKPPVPYKAIL----TSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDV  293 (466)
T ss_pred             CCCCC---HHHH--HHHHhcccccccCCCCCCCHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCh
Confidence            43100   0000  000000001111111456888876    88999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhhhcc---------hhHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHhhh
Q 016048          275 NQFADLMVIAGIAGTISQLIMMPVLAPTVGE---------ARLLSFGLLFGCVHMFLYSVAWSSW--VPYAAAVFSILSV  343 (396)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~---------~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~  343 (396)
                      .+.|++.++..+...+.. +++|.++||..+         |-.-.++....+++++.+++.+...  .....+.+..+..
T Consensus       294 ~~~G~~salP~l~~~~~k-~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~  372 (466)
T KOG2532|consen  294 RETGFLSALPFLAMAIVK-FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS  372 (466)
T ss_pred             hhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc
Confidence            999999999999999999 788999998754         3344566677777777777766422  2333444444444


Q ss_pred             hhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      +........-.....|++.+..+|+.+....+.++++|.+.|.+..
T Consensus       373 g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~  418 (466)
T KOG2532|consen  373 GFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT  418 (466)
T ss_pred             ccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence            4443333333333245999999999999999999999999999884

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=3.6e-30  Score=239.15  Aligned_cols=361  Identities=13%  Similarity=0.042  Sum_probs=248.1

Q ss_pred             CccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhh
Q 016048            2 EKKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALL   81 (396)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~   81 (396)
                      .+++..+.+.+..++..++.+...|.+|.+..+       +++.+..+.|++.+++.++..++++++|+++||+|||+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~   79 (420)
T PRK09528          7 LKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHD-------INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL   79 (420)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence            355677777888899999899999999999765       4678889999999999999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHH---hccCc--hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHH
Q 016048           82 TVPITLSIIPLAILA---YSRSR--NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVC  156 (396)
Q Consensus        82 ~~~~~~~~~~~~~~~---~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  156 (396)
                      +++..+.++......   .++..  .......++++..|. +.....+....+..+.  ++++++.++......++|..+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i  156 (420)
T PRK09528         80 LWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGF-GFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWAL  156 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHH
Confidence            887666554433221   11110  001122334444444 3333333344443332  245677888888889999999


Q ss_pred             HHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhh
Q 016048          157 GTISARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH  233 (396)
Q Consensus       157 g~~~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (396)
                      +|.+++.+   +|+..|++.+++.++..++.+...||++++++.++           +       +++++++.+.++..+
T Consensus       157 ~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-------~~~~~~~~~~~~~~~  218 (420)
T PRK09528        157 CAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN-----------A-------LGANASAVSLKDALA  218 (420)
T ss_pred             HHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc-----------c-------hhcccccccHHHHHH
Confidence            99998876   78999998888777666555444444332211000           0       000111223444444


Q ss_pred             hhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhc---cccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHH
Q 016048          234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF---HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS  310 (396)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  310 (396)
                      .+ ++|.++...+........+.....++|.|+.+.+   +.+..+.+.+.+...+...++. +..+++.||+++|+.+.
T Consensus       219 ~l-~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~  296 (420)
T PRK09528        219 LL-KLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIM-FFAPFIINRIGAKNALL  296 (420)
T ss_pred             Hc-cCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcchhhH
Confidence            44 4555554444444444444445556777776543   4556677888888888888888 77789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhh-HHHHHHHHHHhhhhhhhhhh
Q 016048          311 FGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC-ISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       311 ~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~  388 (396)
                      .+..+.+++..++.+..+.+.... ..+.+.+.+...+....++.|.+|++.+++..+. .++...+|..++|.+.|++.
T Consensus       297 ~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~  376 (420)
T PRK09528        297 LAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLY  376 (420)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888777666654443 3344555666667777888999999999998776 67778899999999999999


Q ss_pred             hccc
Q 016048          389 GDCR  392 (396)
Q Consensus       389 ~~~~  392 (396)
                      |..+
T Consensus       377 ~~~G  380 (420)
T PRK09528        377 DSIG  380 (420)
T ss_pred             HhhC
Confidence            9764

>TIGR00901 2A0125 AmpG-related permease

Probab=99.97  E-value=6.3e-30  Score=232.48  Aligned_cols=318  Identities=12%  Similarity=0.057  Sum_probs=234.0

Q ss_pred             ccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-----CCchhh-hHHHHHhHHHHHH
Q 016048           21 TSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-----GRKALL-TVPITLSIIPLAI   94 (396)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~~~-~~~~~~~~~~~~~   94 (396)
                      .+...+.+|.+.        +|+++|..+.|+.... .+...+ .+++|+++||+     ||||.+ +.+.++.++....
T Consensus         4 ~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~   73 (356)
T TIGR00901         4 LGLVGNTLPYWL--------RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI   73 (356)
T ss_pred             chhHHhHHHHHH--------HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence            345667778773        3567888899999755 455554 88999999998     899974 5677778787777


Q ss_pred             HHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----h-----
Q 016048           95 LAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----S-----  165 (396)
Q Consensus        95 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~-----  165 (396)
                      .++.++..+.+.+....++.++ +.+...+...+++.|++|+|+|+++.++...+.++|.++++.+++.+    +     
T Consensus        74 l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~  152 (356)
T TIGR00901        74 LSFLVPSTDLPLLAGLAFLIAF-FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL  152 (356)
T ss_pred             HHcCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            7777554447777788888888 77888899999999999999999999999999999999999888654    6     


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChh--
Q 016048          166 ---TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT--  240 (396)
Q Consensus       166 ---~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  240 (396)
                         ||..|++.++..++..+..++..||++++++++           +     +++++   .++++++    ++++|.  
T Consensus       153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-----------~-----~~~~~---~~~~~~~----~~~~~~~~  209 (356)
T TIGR00901       153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP-----------K-----PLTQA---VLKPIRE----FFQRKNMI  209 (356)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-----------h-----hHHHH---HHHHHHH----HHHhcCch
Confidence               999999988877776555544567643321100           0     00000   0012222    223333  


Q ss_pred             -HHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHH-HHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          241 -FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGI-AGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                       ++...+..++....++....+.|.|+++ +|+++.+.+......+. ..+++. ++++++.||+|+|+.+..+.++.++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence             5556666666677777888899999988 79999998888877764 566777 7788999999999998888887777


Q ss_pred             HHHHHHHh-----------hhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHH
Q 016048          319 HMFLYSVA-----------WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS  374 (396)
Q Consensus       319 ~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  374 (396)
                      ....+.+.           .+.+.... .++.+++.+...+...++..|.+|+++||+.+|+.+...+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       288 TNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            76655443           12232332 3344777888999999999999999999999999887654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=1.2e-29  Score=263.06  Aligned_cols=360  Identities=11%  Similarity=0.057  Sum_probs=261.2

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      +++.+..++...++..++.++....++.+......  ...-..+....++..+++.+.+++++++.|+++||+|||+++.
T Consensus         9 ~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~   86 (1140)
T PRK06814          9 KSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLS--GALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAK   86 (1140)
T ss_pred             hccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHH
Confidence            34566677788888888766554443333222111  1111223356789999999999999999999999999999864


Q ss_pred             H---HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHH
Q 016048           83 V---PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        83 ~---~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  159 (396)
                      .   ..+......+.....++   ++.++++|+++|+ +.+...|+..+++.|++|+++|++++++.+.+.++|.++||+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi-~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~  162 (1140)
T PRK06814         87 ILKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGI-HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTI  162 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHH
Confidence            3   22222222233334467   9999999999999 889999999999999999999999999999999999999999


Q ss_pred             HHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhh
Q 016048          160 SARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLL  235 (396)
Q Consensus       160 ~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (396)
                      +++++    +|++.|....+..++ .++..+.+|++++.++..+. .                   .+......+.++.+
T Consensus       163 l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~  221 (1140)
T PRK06814        163 IGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNAAPDLKI-D-------------------RNIIRSTITLLKYA  221 (1140)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCCee-c-------------------cchHHHHHHHHHHH
Confidence            99986    788888444444443 44445667766443221000 0                   00000112234445


Q ss_pred             cCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHH
Q 016048          236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF  315 (396)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  315 (396)
                      ++++.++...+..++..+.......++|.|+++.+|.++...+.+.+..+++.+++. +..+++.|+..+++.+..+.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~g~l~~~~~~~~~~~~~~~~  300 (1140)
T PRK06814        222 KADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGS-FLASKLSEGRITLLYVPIGALL  300 (1140)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-HHHHHHhCCceeeeeehHHHHH
Confidence            578888888887777777777788899999999999999999999999999999999 6778898887766665555555


Q ss_pred             HHHHHHHHHHh--------------------hhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHH
Q 016048          316 GCVHMFLYSVA--------------------WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS  374 (396)
Q Consensus       316 ~~i~~~~~~~~--------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  374 (396)
                      .+++.+.+.+.                    .+.+...+ .++++++.+...+...+++++.+|++++|+++|+.+++..
T Consensus       301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~  380 (1140)
T PRK06814        301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA  380 (1140)
T ss_pred             HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence            54444433332                    22333333 4556777888888899999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhc
Q 016048          375 FANLVSPLAFSPLTGD  390 (396)
Q Consensus       375 ~g~~~~~~~~g~l~~~  390 (396)
                      ++..+++.+.|.+.+.
T Consensus       381 ~~~~ig~~~~g~l~~~  396 (1140)
T PRK06814        381 AFMVAGTIILALLQAL  396 (1140)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998754

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.97  E-value=2.8e-29  Score=231.46  Aligned_cols=358  Identities=12%  Similarity=0.057  Sum_probs=253.1

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +.++.+....++.+.+.+...|.+|.+..+       +++.+..+.|++.+++.++..+++++.|+++||+|||+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~   74 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHD-------VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI   74 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            456777788899999999999999999765       3567788999999999999999999999999999999999987


Q ss_pred             HHHhHHHHHHH---HhccC--chhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHH
Q 016048           85 ITLSIIPLAIL---AYSRS--RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        85 ~~~~~~~~~~~---~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  159 (396)
                      ....+++....   .+.+.  ........+.+++.|+ +.+...+....+..|..+  ++++.++......++|..+||.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~  151 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGF-VFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCAS  151 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHH
Confidence            76665544322   22221  0113445677888998 778778888888877543  3455677788888999999999


Q ss_pred             HHHHh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhc
Q 016048          160 SARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK  236 (396)
Q Consensus       160 ~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (396)
                      +++.+   +||..|++.+++.++..++.+...||+++++++++                  ..+.++++.+.++..+.+ 
T Consensus       152 ~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l-  212 (396)
T TIGR00882       152 IAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVAN------------------ALGANASAFSLKLALELF-  212 (396)
T ss_pred             HHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhc------------------ccccccCCCCHHHHHHHH-
Confidence            98865   89999999988888776655444444432211000                  000001112233333334 


Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhc---cccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF---HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGL  313 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  313 (396)
                      ++|.++...+..++....+.....+.+.|+++.+   +.+....+...+...+...++. ...+++.||+++|+.+..+.
T Consensus       213 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~-~~~g~l~~r~g~~~~l~~~~  291 (396)
T TIGR00882       213 RQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIM-FCAPLIINRIGAKNALLIAG  291 (396)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHH
Confidence            4566655555555555555555566788877654   4455567888888888888888 67789999999999999888


Q ss_pred             HHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhh-HHHHHHHHHHhhhhhhhhhhhcc
Q 016048          314 LFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC-ISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       314 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .+.++...+.....+.+.... ..+.+.+..........+..+..|++.++++.+. .+....+|+.++|.+.|++.|..
T Consensus       292 ~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~  371 (396)
T TIGR00882       292 TIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI  371 (396)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence            888887777666555544433 3333444444444555667777888888888776 67888999999999999999975


Q ss_pred             c
Q 016048          392 R  392 (396)
Q Consensus       392 ~  392 (396)
                      +
T Consensus       372 G  372 (396)
T TIGR00882       372 G  372 (396)
T ss_pred             c
Confidence            3

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.97  E-value=6.8e-29  Score=233.62  Aligned_cols=353  Identities=13%  Similarity=0.105  Sum_probs=252.7

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-----CCc
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-----GRK   78 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk   78 (396)
                      +|+...++...+..++......+.+|.+..+        .+.+..+.|.. +...... ++.+++|+++||+     |||
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~--------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grr   80 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTV--------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRR   80 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCc
Confidence            4556677777888888888999999999555        35666677775 3333333 5889999999999     999


Q ss_pred             hh-hhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHH
Q 016048           79 AL-LTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        79 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  157 (396)
                      |. +..+.+..+++...+++.+...+++.+.+.+++.++ +.+...+...+++.|++|+|+|+++.++...+..+|.+++
T Consensus        81 r~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~-~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg  159 (491)
T PRK11010         81 RGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF-CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS  159 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence            86 557777777787777776443348889999999999 8888889999999999999999999999999999999998


Q ss_pred             HHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHh
Q 016048          158 TISARF-----ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMV  232 (396)
Q Consensus       158 ~~~~~~-----~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (396)
                      +.++..     .+||..|++.+++.++..+.. +..||+++++++++            +    .+   ++...++++. 
T Consensus       160 ~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~~~~~~~~------------~----~~---~~~~~~l~~~-  218 (491)
T PRK11010        160 GGLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEPTDTIPVPK------------T----LE---QAVVAPLRDF-  218 (491)
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCcccccccc------------c----hh---hhHHHHHHHH-
Confidence            866654     379999999988777665544 45787643211000            0    00   0000123332 


Q ss_pred             hhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHH-HHHHHHHHHHHHHHHhhhhhhcchhHHHH
Q 016048          233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMV-IAGIAGTISQLIMMPVLAPTVGEARLLSF  311 (396)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  311 (396)
                        + +++..+......++..........+.+.|+.+.+|+++.+.+.... ...++.+++. ++.|++.||+++|+.+..
T Consensus       219 --~-~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L~dr~g~~~~l~i  294 (491)
T PRK11010        219 --F-GRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGA-LYGGILMQRLSLFRALMI  294 (491)
T ss_pred             --H-cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHH
Confidence              2 3444554444445555555566677888887778999999999875 4456788888 788999999999887776


Q ss_pred             HHHHHHHHHHHH---HHhh-hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhh
Q 016048          312 GLLFGCVHMFLY---SVAW-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSP  386 (396)
Q Consensus       312 ~~~~~~i~~~~~---~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~  386 (396)
                      +..+..+..+.+   .... +.+.... ..+..+..+...+...++..+..+++.+++.+|+.+....+|..+++.+.|.
T Consensus       295 ~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~  374 (491)
T PRK11010        295 FGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGW  374 (491)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655544443322   2221 2222221 2232334455567778889999999999999999999999999999999999


Q ss_pred             hhhccc
Q 016048          387 LTGDCR  392 (396)
Q Consensus       387 l~~~~~  392 (396)
                      +.|..+
T Consensus       375 l~~~~G  380 (491)
T PRK11010        375 FVEAHG  380 (491)
T ss_pred             HHHHhC
Confidence            999653

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=1.9e-29  Score=262.48  Aligned_cols=359  Identities=16%  Similarity=0.130  Sum_probs=263.2

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      +.+.+..+++..++..++.......+..++....     +...+....+++.+++.++..++++++|+++||+|||++++
T Consensus         7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~   81 (1146)
T PRK08633          7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY-----DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR   81 (1146)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH
Confidence            3445666677777766665444333333333321     22334567899999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHH---hccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHH
Q 016048           83 VPITLSIIPLAILA---YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        83 ~~~~~~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  159 (396)
                      .+.++..+..++..   .+++   ++.++++|+++|+ +.+...+...+++.|++|+++|++++++.+.+.++|.++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~  157 (1146)
T PRK08633         82 IVKLFEVGLTLLIVLAYYLGW---FWLAFAVTFLLGA-QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA  157 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence            98877666655544   3456   8999999999999 889999999999999999999999999999999999999999


Q ss_pred             HHHHhh-------------hHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCC
Q 016048          160 SARFIS-------------TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLP  226 (396)
Q Consensus       160 ~~~~~~-------------~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  226 (396)
                      +++++.             |++.+.+..+...+..++..+.+||+++.....+  +       .         .......
T Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---------~~~~~~~  219 (1146)
T PRK08633        158 LFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF--D-------K---------KKYLFPK  219 (1146)
T ss_pred             HHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc--c-------c---------cccccHH
Confidence            988752             2333333333333333344456777654432110  0       0         0000000


Q ss_pred             ChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc-chhhHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 016048          227 SIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKN-QFADLMVIAGIAGTISQLIMMPVLAPTVGE  305 (396)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  305 (396)
                      ..++.++.+++++.++...+..++..........++|.|+.+.+|++.. ..+++.+...++.+++. ++.+++.||+++
T Consensus       220 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~-~~~g~l~~r~~~  298 (1146)
T PRK08633        220 LLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGS-LLAGRLSGRHIE  298 (1146)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhCCceE
Confidence            1122233344677777766666666666666778899999998999998 88999999999999999 777899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhh
Q 016048          306 ARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAF  384 (396)
Q Consensus       306 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~  384 (396)
                      ++.+.++.++.+++.+++.+..+.+...+ .++++++.+...+...+++.+..|+++||+++|+.+.+..+|..+++.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        299 LGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             ccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            88888888888777777776655444433 55567777778888899999999999999999999999999998888777


Q ss_pred             hhhhh
Q 016048          385 SPLTG  389 (396)
Q Consensus       385 g~l~~  389 (396)
                      +.+..
T Consensus       379 ~~l~~  383 (1146)
T PRK08633        379 TLFSG  383 (1146)
T ss_pred             HHHHH
Confidence            66543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.97  E-value=1.4e-28  Score=227.34  Aligned_cols=343  Identities=12%  Similarity=0.073  Sum_probs=250.5

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCC-chhhhHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGR-KALLTVPIT   86 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-k~~~~~~~~   86 (396)
                      ..+....++.+..+++..|.++.+..+       +++.+..+.|++.+++.++.+++++++|+++||+|| |+++.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~   77 (418)
T TIGR00889         5 AKLKFMSFLQWFIWGSWLVTLGSYMSK-------TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHF   77 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            456778888999999999999999765       457888899999999999999999999999999965 778888888


Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHh--------cCCCcccchhHHHHHHHhhhhhhHHHH
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVA--------DNVPPGRRASVFGIFSGIVSGAFVCGT  158 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~  158 (396)
                      +..++..+..+.++   ++.+++.|++.|+ +.+...+...++..        |..++..|.+..|      .+|..+||
T Consensus        78 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~  147 (418)
T TIGR00889        78 AGALLLFFAAQVTT---PAGMFPVLLANSL-AYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAM  147 (418)
T ss_pred             HHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHH
Confidence            88888888888888   8889999999998 76666666555432        3333344555544      46788888


Q ss_pred             HHHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhh
Q 016048          159 ISARFIST---SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLL  235 (396)
Q Consensus       159 ~~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (396)
                      .+++.++.   +.+|++.+++.++..++ .+.+||+|+++++++             .   +.++  ..+.+.++    +
T Consensus       148 ~l~g~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~-------------~---~~~~--~~~~~~~~----~  204 (418)
T TIGR00889       148 WAVSLLDIELSNIQLYITAGSSALLGVF-ALTLPDIPVAKSTAK-------------M---SIKV--MLGLDAFI----L  204 (418)
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHHH-HhcCCCCCCCccccc-------------c---CHHH--HhhhhHHH----H
Confidence            88876632   33567777666665544 467788754322100             0   0000  00011222    2


Q ss_pred             cCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc--------cchhhHHHHHHHHHHHHHHHHHHhhhhhhcchh
Q 016048          236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNK--------NQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR  307 (396)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  307 (396)
                      .|+|.++...+..++..........+.+.|.++. |.++        +..+...+...+..+++. +..+++.||+|+|+
T Consensus       205 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~-~~~g~l~dr~g~r~  282 (418)
T TIGR00889       205 FKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFI-LTIPFFLKRFGIKK  282 (418)
T ss_pred             hcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHH
Confidence            3566666666666666555555667778887664 5443        566888898999999998 77789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-h---hHHH-HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHH-HHHHHHHHhhh
Q 016048          308 LLSFGLLFGCVHMFLYSVAWS-S---WVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCIS-GICSFANLVSP  381 (396)
Q Consensus       308 ~~~~~~~~~~i~~~~~~~~~~-~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~-~~~~~g~~~~~  381 (396)
                      ++..+.++..++..++..... .   +... ..++.+++.+...+....++.|.+|+++|++++|+.+ ....+|..++|
T Consensus       283 ~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp  362 (418)
T TIGR00889       283 VMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGY  362 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            999999988888766665322 1   2222 2445567777778888899999999999999999997 56789999999


Q ss_pred             hhhhhhhhccc
Q 016048          382 LAFSPLTGDCR  392 (396)
Q Consensus       382 ~~~g~l~~~~~  392 (396)
                      .+.|.++|+.+
T Consensus       363 ~l~G~l~~~~g  373 (418)
T TIGR00889       363 ILSGVMVEKMF  373 (418)
T ss_pred             HHHHHHHHHhc
Confidence            99999999864

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.96  E-value=2.1e-27  Score=219.30  Aligned_cols=343  Identities=15%  Similarity=0.103  Sum_probs=237.2

Q ss_pred             HHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-----CCch-hhhH
Q 016048           10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-----GRKA-LLTV   83 (396)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~-~~~~   83 (396)
                      ++...+..++..+...+.+|.++++        .+.+..++|++..+...  .+..+++|+++||+     |||| .+..
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~--------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~   73 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTV--------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLL   73 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHH
Confidence            3445666777788888999999665        37888899999777775  68899999999999     8876 6888


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF  163 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  163 (396)
                      +.++.+++....++.+...+++.+++..++.+. ..+...+...+++.|+.|+|+|+++.++...+.++|.++++.++..
T Consensus        74 ~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~  152 (402)
T PRK11902         74 TQVGLAASIAAMAFCPPHAALWPLAGLAVLVAF-LSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW  152 (402)
T ss_pred             HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence            888888888888887443337778888888887 7788889999999999999999999999999999999998876654


Q ss_pred             -----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCC
Q 016048          164 -----ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS  238 (396)
Q Consensus       164 -----~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
                           .+||..|++.++..++..+. .+..||+++++++++                +.++       +.++.++.+.++
T Consensus       153 l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~----------------~~~~-------~~~~~~~~l~~~  208 (402)
T PRK11902        153 LADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPR----------------SLGE-------AVVGPLRDFFSR  208 (402)
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccc----------------hhHH-------HHHHHHHHHHhC
Confidence                 38999999988877665443 456777654322100                0000       011112223367


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHH-HHHHHHHHHHHhhhhhhcchhHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGI-AGTISQLIMMPVLAPTVGEARLLSFGLLFGC  317 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  317 (396)
                      |.++..++..++..........+.+.++.+.+|+++.+.+......+. +.+++. .+.+++.||+++|+.+..+..+..
T Consensus       209 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~~l~~~~~~~~  287 (402)
T PRK11902        209 RGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYRSLMLFGVLQA  287 (402)
T ss_pred             cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHH
Confidence            777766666555554433333455566777779999999988866554 467777 778899999999988777666655


Q ss_pred             HHHHHH---HHhh-hhhHHHHH-HH----HHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          318 VHMFLY---SVAW-SSWVPYAA-AV----FSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       318 i~~~~~---~~~~-~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  388 (396)
                      +..+.+   .... +.+..... .+    .+...+...+....++++..|    ++..+..+....++...++.+.|.+.
T Consensus       288 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~G~l~  363 (402)
T PRK11902        288 VSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS----ATQYALLSALASVGRVYVGPTSGYLV  363 (402)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554333   2322 22322222 12    123334444555555555555    44556666666778877777899999


Q ss_pred             hccc
Q 016048          389 GDCR  392 (396)
Q Consensus       389 ~~~~  392 (396)
                      |+.+
T Consensus       364 ~~~G  367 (402)
T PRK11902        364 EAYG  367 (402)
T ss_pred             HHhC
Confidence            8765

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.1e-29  Score=216.11  Aligned_cols=353  Identities=17%  Similarity=0.148  Sum_probs=273.0

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccC------------------------------------------CCCCcch
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVC------------------------------------------PGRDECS   44 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------------~~~~~~~   44 (396)
                      +..+.+..+++.+-...+.|.+|.|..|..+                                          ....+.+
T Consensus        23 lviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~  102 (464)
T KOG3764|consen   23 LVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLD  102 (464)
T ss_pred             EEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcc
Confidence            3456788889999999999999999988542                                          0123455


Q ss_pred             hHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhH
Q 016048           45 LAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHC  124 (396)
Q Consensus        45 ~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  124 (396)
                      ...+++|++.+.+.+.+++.+++.|.+.||+|+|-.++++.++...++++.++..+   ++.+++.|.+||+ |.+...+
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgv-gsA~~~t  178 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGV-GSAFADT  178 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhh-hHHHHHh
Confidence            66789999999999999999999999999999999999999999999999999999   9999999999999 9999999


Q ss_pred             HHHHHHhcCCCccc-chhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 016048          125 LSLAYVADNVPPGR-RASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYT  199 (396)
Q Consensus       125 ~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  199 (396)
                      +..++++|.+|+|+ |++++|+...+.++|.++||.+|+.+    |.+.+|.+.+++.++...+-++.++.+..+++   
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~---  255 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD---  255 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc---
Confidence            99999999999765 79999999999999999999999986    88999999999999988877565554332221   


Q ss_pred             ccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhh
Q 016048          200 PILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFAD  279 (396)
Q Consensus       200 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  279 (396)
                                           ..++..++++++    ++|.++.........+.........++.+..|.+..+.-+.|.
T Consensus       256 ---------------------~~~~~~~~~~Ll----~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~  310 (464)
T KOG3764|consen  256 ---------------------STEQGTPMWSLL----MDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGL  310 (464)
T ss_pred             ---------------------ccccCccHHHHH----hCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceee
Confidence                                 122233455544    5777776666666666666777788888888888855558899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcchh--HHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhc
Q 016048          280 LMVIAGIAGTISQLIMMPVLAPTVGEAR--LLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQ  356 (396)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  356 (396)
                      .+....+...++. .+.+.+.||++..+  ....+.+..++......+..+....++ ...++++.+.............
T Consensus       311 ~fLp~~~~y~ig~-~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~l  389 (464)
T KOG3764|consen  311 AFLPASLSYAIGT-NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYL  389 (464)
T ss_pred             eecccccchhccC-chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHh
Confidence            9999999999999 66679999999433  344445555555555555555444333 3333444444443333333333


Q ss_pred             cCC---c---cchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          357 VAS---N---EQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       357 ~p~---~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ++.   +   .-|...++......+|.++||.++|.+.+..+
T Consensus       390 vd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG  431 (464)
T KOG3764|consen  390 VDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG  431 (464)
T ss_pred             cchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh
Confidence            332   3   56899999999999999999999999987653

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.96  E-value=4.9e-27  Score=219.98  Aligned_cols=373  Identities=12%  Similarity=0.064  Sum_probs=262.3

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccc-cCCchhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALL   81 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~~   81 (396)
                      +++.++.+++..+...++.+...+.+|.|+.+.     .+++.+..+.|++.+.+.++..++++++|+++|| +|||+++
T Consensus         8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l   82 (475)
T TIGR00924         8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ-----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM   82 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH
Confidence            445677888889999999999999999997652     1367888899999999999999999999999999 8999999


Q ss_pred             hHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCccc---chhHHHHHHHhhhhhhHHHH
Q 016048           82 TVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGR---RASVFGIFSGIVSGAFVCGT  158 (396)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~  158 (396)
                      .++.++.+++.++.+++++   ++.++++|.+.|+ +.+...+...++++|++|+++   |+++++++....++|..+||
T Consensus        83 ~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~  158 (475)
T TIGR00924        83 VLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP  158 (475)
T ss_pred             HHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence            9999999999999999888   7888899999999 888889999999999998764   88899999999999999999


Q ss_pred             HHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-cccccccchhhhhhh------------------hhhh
Q 016048          159 ISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDED-LYTPILSSKAEISAS------------------CEES  215 (396)
Q Consensus       159 ~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~l~~~~~~~~~~------------------~~~~  215 (396)
                      .+++.+    +||+.|.+.++..++..+ .+...++..++.+ +++..++.+.+....                  .+..
T Consensus       159 ~l~g~l~~~~g~~~~f~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (475)
T TIGR00924       159 LLAGVIAENYGYHVGFNLAAVGMVIGLL-TFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVV  237 (475)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            998875    899999988765544433 3333332211100 000000000000000                  0000


Q ss_pred             hh---------------hhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccc----
Q 016048          216 TK---------------KLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ----  276 (396)
Q Consensus       216 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----  276 (396)
                      ..               .....+++.+..+    -+|.+.+..+++...+....+....+.++.+.++..+.+...    
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip  313 (475)
T TIGR00924       238 IANILLMTVTLAVIIFFFRLAFKPRLDAVA----RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVP  313 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHH----HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEEC
Confidence            00               0000000001111    001123344455555666666677777888877754444222    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhcc-----hhHH--HHHHHHHHHHHHHHHHh---------hhhhH-HHHHHHHH
Q 016048          277 FADLMVIAGIAGTISQLIMMPVLAPTVGE-----ARLL--SFGLLFGCVHMFLYSVA---------WSSWV-PYAAAVFS  339 (396)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-----~~~~--~~~~~~~~i~~~~~~~~---------~~~~~-~~~~~~~~  339 (396)
                      .+++.+.+++..++.+.++. ++..|.+|     +...  ..|.++.++++..+...         .+.+. ....++++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~-~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~  392 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLA-MIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQT  392 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHH-HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            67888889999888884443 33333332     3333  67788888887776641         23333 33367779


Q ss_pred             HhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ++.....|...+++.+..|++.||+++|+......+|..+++.+.+...+.
T Consensus       393 ~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~  443 (475)
T TIGR00924       393 LGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP  443 (475)
T ss_pred             HHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999998888766543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=2.6e-27  Score=221.50  Aligned_cols=344  Identities=14%  Similarity=0.099  Sum_probs=252.2

Q ss_pred             HHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccc----cCCch-hhhHHHHHhHH
Q 016048           16 VHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK----YGRKA-LLTVPITLSII   90 (396)
Q Consensus        16 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~-~~~~~~~~~~~   90 (396)
                      ......++..+.++.+..+       +++++..+.|++.++..+..++..|+.|+++||    +|||| .++.+....++
T Consensus        10 ~~~~~~~~~~~~l~~~~~~-------~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i   82 (437)
T TIGR00792        10 GNNFIFAIVSTYLLFFYTD-------VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSI   82 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHH
Confidence            3444555666666666554       567888999999999999999999999999997    67755 56678888888


Q ss_pred             HHHHHHhccCch---hHHHHHHHHHHHhhhccchhhHHHHHHHhcCC-CcccchhHHHHHHHhhhhhhHHHHHHHH----
Q 016048           91 PLAILAYSRSRN---FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV-PPGRRASVFGIFSGIVSGAFVCGTISAR----  162 (396)
Q Consensus        91 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~----  162 (396)
                      +.+++...++.+   ....+++.+++.++ +.+...+...++..|.. ++++|++..++.+....+|..+++.+..    
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~  161 (437)
T TIGR00792        83 VLVLLFTTPDFSATGKLVYAYITYILLGL-FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS  161 (437)
T ss_pred             HHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887766421   24567778888888 76776677788889987 4688999999988888887665543322    


Q ss_pred             -------HhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhh
Q 016048          163 -------FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLL  235 (396)
Q Consensus       163 -------~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (396)
                             ..+||+.+.+.+++.++..++.++..||+++++++                       +++++.+.++.++.+
T Consensus       162 ~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~-----------------------~~~~~~~~~~~~~~l  218 (437)
T TIGR00792       162 YFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPK-----------------------NIEKKLSLKQIFKAL  218 (437)
T ss_pred             HhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCc-----------------------ccccCCCHHHHHHHH
Confidence                   23689999988888887777666677775422110                       001112345555555


Q ss_pred             cCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHH
Q 016048          236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF  315 (396)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  315 (396)
                      .++|.++...+..++..........+.+.|.++.++ ++...+.+.....+..+++. ++.+++.||+|+|+.+..+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~~~~~~~  296 (437)
T TIGR00792       219 FKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILFAGGILL  296 (437)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHH
Confidence            678888887777777777666666666666665555 45556677777788888888 6778999999999999998888


Q ss_pred             HHHHHHHHHHhh-hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccC-------CccchhHhhhHHHHHHHHHHhhhhhhhh
Q 016048          316 GCVHMFLYSVAW-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANLVSPLAFSP  386 (396)
Q Consensus       316 ~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~  386 (396)
                      .+++.+.+.+.. +.+.... ..+.+++.+...+..+++.+|..|       ++++|.++|+.+....+|..+++.+.|.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~  376 (437)
T TIGR00792       297 MVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL  376 (437)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777666543 2222222 445567777888888999888875       4568999999999999999999999999


Q ss_pred             hhhccc
Q 016048          387 LTGDCR  392 (396)
Q Consensus       387 l~~~~~  392 (396)
                      +.+..+
T Consensus       377 ll~~~G  382 (437)
T TIGR00792       377 ILGIIG  382 (437)
T ss_pred             HHHHcC
Confidence            998754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=6.5e-27  Score=202.29  Aligned_cols=349  Identities=14%  Similarity=0.140  Sum_probs=285.2

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      +..+....++.++......+.+|.+        ++.++++..+.+++..+++.++.+++++.|++.+|+|+|+.+++++.
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l--------~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~   86 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHL--------KEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLL   86 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHH--------HHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHH
Confidence            3344556667777788888998888        66788999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh--
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--  164 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--  164 (396)
                      ++++++.+..-+.+...+..++++-++.|. |.+...+....+++...|+++..+.+.+.+...++|.++||++++.+  
T Consensus        87 l~avg~~lF~pAa~~~~y~~FL~~lFila~-Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738          87 LYAVGAALFWPAASSKSYGFFLVALFILAS-GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHHHh-hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            999999998644444448999999999999 99999999999999999999999999999999999999999998764  


Q ss_pred             ---------------------hhHHHHHHHHHHHHHHHHHHH-HhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhh
Q 016048          165 ---------------------STSAAFQAATAGSIISAVYMR-IFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVF  222 (396)
Q Consensus       165 ---------------------~~~~~f~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  222 (396)
                                           .++++|...+...++..+... ...||.++.++                      ++.+
T Consensus       166 s~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~----------------------~~~~  223 (422)
T COG0738         166 SGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAP----------------------SLGA  223 (422)
T ss_pred             hhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccc----------------------cccc
Confidence                                 146677776666655544331 12233222111                      0001


Q ss_pred             ccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 016048          223 KRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT  302 (396)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  302 (396)
                      +++....+    +.++|+++...+..+++........++++.|+.+..|.+..+.+...+....+.++|+ +++.++.+|
T Consensus       224 ~~~~~~~~----l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGR-Fig~~lm~~  298 (422)
T COG0738         224 SGSAGLSS----LFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGR-FIGSALMSR  298 (422)
T ss_pred             cccchHHH----HHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            11112333    3378999999999999999999999999999999779999999999999999999999 777788889


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhh
Q 016048          303 VGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPL  382 (396)
Q Consensus       303 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~  382 (396)
                      +...|.+.....+..+.++...+.++....+...+++.+.+..+|..++...+..| ++...+.+ .-.+.-.|+++.|.
T Consensus       299 ~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~-~l~maivGGAiiP~  376 (422)
T COG0738         299 IKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSG-LLVMAIVGGAIIPP  376 (422)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccce-eeeeheecchHHHH
Confidence            99999999988888888888888888877888888999999999999999999999 55555544 44566789999999


Q ss_pred             hhhhhhhcccC
Q 016048          383 AFSPLTGDCRF  393 (396)
Q Consensus       383 ~~g~l~~~~~~  393 (396)
                      +.|++.|..+.
T Consensus       377 l~G~i~d~~g~  387 (422)
T COG0738         377 LQGVIADMFGI  387 (422)
T ss_pred             HHHHHHHhhhh
Confidence            99999998754

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=4.1e-28  Score=233.29  Aligned_cols=366  Identities=14%  Similarity=0.204  Sum_probs=257.9

Q ss_pred             HHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHH
Q 016048           13 TIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPL   92 (396)
Q Consensus        13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~   92 (396)
                      ..+...+..+...+.++.+        ++++++++.+.|++.+.+.++++++.++.|+++||+||||.+.++.++.+++.
T Consensus        41 ~~~~~~~~~g~~~~~l~~i--------ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTI--------ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHhhchhh--------hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            3444444556666777666        66788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcc----------------------------C--------------------chhHHHHHHHHHHHhhhccchhhH
Q 016048           93 AILAYSR----------------------------S--------------------RNFFYAYYVLRTLTAMVCEGSIHC  124 (396)
Q Consensus        93 ~~~~~~~----------------------------~--------------------~~~~~~l~~~r~l~G~~~~~~~~~  124 (396)
                      +++++.+                            +                    ...+..++++|+++|+ +.+...+
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi-G~~~~~~  191 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI-GATPIFP  191 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc-cCCcchh
Confidence            9988753                            0                    0025677899999999 9999999


Q ss_pred             HHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh--------------------------hhHHHHHHHHHHHH
Q 016048          125 LSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--------------------------STSAAFQAATAGSI  178 (396)
Q Consensus       125 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--------------------------~~~~~f~~~~~~~~  178 (396)
                      ...+++.|++|+++|+++++++.....+|..+|+++++.+                          .||..|++.+++.+
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~  271 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL  271 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888753                          16667888888777


Q ss_pred             HHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhh
Q 016048          179 ISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGL  258 (396)
Q Consensus       179 ~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (396)
                      +..+.. +.+|++.+++++++..+..+++..++ .+.+...+..+...+..+..+.+.++|.++...+..++.....+++
T Consensus       272 l~~v~l-~~~p~~lp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~  349 (633)
T TIGR00805       272 LTSIPF-FFFPKALPKEGKRVNVDVHETEKLEK-SEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGY  349 (633)
T ss_pred             HHHHHH-HhCccccCCcccccchhhhhhhcccc-cccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            766544 55665533221100000000000000 0000000000000111122233447888998888888888899999


Q ss_pred             hhhHHHHhhhhccccccchhhHHHHHHH-HHHHHHHHHHHhhhhhhc--chhHHHHHHHHHHHHHHHHHH----------
Q 016048          259 QGSMMYYLKAKFHFNKNQFADLMVIAGI-AGTISQLIMMPVLAPTVG--EARLLSFGLLFGCVHMFLYSV----------  325 (396)
Q Consensus       259 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~----------  325 (396)
                      ..++|.|+++.+|+++.+++.+.....+ +.+++. +++|++.||++  .|+.+..+..+..++.+....          
T Consensus       350 ~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  428 (633)
T TIGR00805       350 ITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLIGCESAP  428 (633)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHHHHHHHHHHeecCCCCc
Confidence            9999999999999999999999887776 456666 78899999987  456666666666665443220          


Q ss_pred             -----------------hhh--------h---------------------------------------------------
Q 016048          326 -----------------AWS--------S---------------------------------------------------  329 (396)
Q Consensus       326 -----------------~~~--------~---------------------------------------------------  329 (396)
                                       ...        .                                                   
T Consensus       429 ~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsCi~~~~~~~a~~g  508 (633)
T TIGR00805       429 VAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSCVQTPGNSSAKKG  508 (633)
T ss_pred             cceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceecccccccCCCCCCCcCC
Confidence                             000        0                                                   


Q ss_pred             -------hHHHH---HH-HHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHH-HHHHhhhhhhhhhhhc
Q 016048          330 -------WVPYA---AA-VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FANLVSPLAFSPLTGD  390 (396)
Q Consensus       330 -------~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~  390 (396)
                             .....   .+ +..+............+-+.+|+++|+-+.|+...+.+ +|.+-+|+++|+++|.
T Consensus       509 ~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~  581 (633)
T TIGR00805       509 LCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDV  581 (633)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence                   00000   11 11122223344555667788999999999999988876 8889999999999996

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=2.2e-26  Score=218.31  Aligned_cols=335  Identities=19%  Similarity=0.187  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHH
Q 016048           48 YLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSL  127 (396)
Q Consensus        48 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  127 (396)
                      .+.+++.+...++.++++++.|+++|++|||+.++++.+.+.++.+++++++|   +++++++|++.|+ |.|......+
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---~~~l~~GR~l~G~-g~G~~~~~~p  164 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---WYQLIVGRILTGL-GVGGASVLAP  164 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhcc-chhhhhhcch
Confidence            56799999999999999999999999999999999999999999999999999   9999999999999 9999999999


Q ss_pred             HHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc------
Q 016048          128 AYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLPESVRDED------  196 (396)
Q Consensus       128 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~------  196 (396)
                      .+++|..|++.||...+..+....+|..++..++...     +||..+.+..+.+++..+. .+++||+|+.--      
T Consensus       165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~  243 (513)
T KOG0254|consen  165 VYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLE  243 (513)
T ss_pred             hhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChH
Confidence            9999999999999999999999999999998877776     6999999999888888777 789999997321      


Q ss_pred             -cccccccchh-hhhhhhh---hhh-hh--hh-hhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhh
Q 016048          197 -LYTPILSSKA-EISASCE---EST-KK--LQ-VFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLK  267 (396)
Q Consensus       197 -~~~~l~~~~~-~~~~~~~---~~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (396)
                       .++.+++.+. ++++.+.   +.. +.  +. ..+.+..+++.++...+++......+..+.+.........+.+.+++
T Consensus       244 ~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~  323 (513)
T KOG0254|consen  244 EAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK  323 (513)
T ss_pred             HHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence             1222222222 1111111   111 00  00 01111124444421111122222233333333333444555566655


Q ss_pred             hhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhh------------hHHHH-
Q 016048          268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS------------WVPYA-  334 (396)
Q Consensus       268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~-  334 (396)
                      .. |.+... .......++...++. .++.++.||+|||+.+..+...+.+++++++.....            +..+. 
T Consensus       324 ~~-g~~~~~-~~~~~~~~~v~~~~t-~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (513)
T KOG0254|consen  324 SA-GLKSDT-FLASIILGVVNFLGT-LVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVF  400 (513)
T ss_pred             hc-CCCCch-HHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHH
Confidence            43 665443 455566777777777 555799999999999999999999998888754321            11111 


Q ss_pred             H-HHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          335 A-AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       335 ~-~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      . +.......+..|..+.+.+|.+|.+.|+++.++....++..+.+-......+.+.
T Consensus       401 ~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~  457 (513)
T KOG0254|consen  401 LCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA  457 (513)
T ss_pred             HHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1 2223334455677788999999999999999999999998887766555554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.95  E-value=1e-25  Score=207.24  Aligned_cols=348  Identities=14%  Similarity=0.078  Sum_probs=240.1

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHH--HHHHhHHHHhhhhccc-ccccccCCchhhhH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQ--QAIIGLGTLVMMPLVG-NLSDKYGRKALLTV   83 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~~~~~~~G-~l~Dr~Grk~~~~~   83 (396)
                      +..+....+..++..++..|.+|.+.+|        .+.+..+.|+.  .+...+...+.+|+++ +.+||+||||.+++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~--------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~   74 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE--------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL   74 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence            3456667788888889999999999655        36778899997  4677888888999994 47999999999766


Q ss_pred             HHHHh-HHHHHHHH-hccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHH
Q 016048           84 PITLS-IIPLAILA-YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA  161 (396)
Q Consensus        84 ~~~~~-~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  161 (396)
                      ...+. .......+ +........+++..-.+.++ ..+...+...++..|..++++++...+....+..+|.++|+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~  153 (390)
T TIGR02718        75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASL-ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT  153 (390)
T ss_pred             HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55332 22222222 21121113344445555555 66677778888889999888888888888888888999888654


Q ss_pred             H----HhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcC
Q 016048          162 R----FISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKS  237 (396)
Q Consensus       162 ~----~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (396)
                      +    ..+||..|++.+++.++..+..++..||+++++++                   +    ++   ..++..+.+ |
T Consensus       154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-------------------~----~~---~~~~~~~~l-~  206 (390)
T TIGR02718       154 LVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEA-------------------P----LA---RRASLFRFF-R  206 (390)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc-------------------c----hh---hHHHHHHHH-c
Confidence            4    45999999999988877666553433332211110                   0    00   011222233 5


Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHH-HHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAG-TISQLIMMPVLAPTVGEARLLSFGLLFG  316 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~g~~~~~~~~~~~~  316 (396)
                      +|.++......++..........+.+.|++| .|+++++.+......+... +++. +..+++.||+|+|+.+..+..+.
T Consensus       207 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       207 RPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGC-GGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHH
Confidence            5667766667677777777778888999988 4999999999988877644 4555 77889999999999988777665


Q ss_pred             HHHHHHHHHhh------hhhHHHHHHH-HHHhhhhhhhhhhHHHhhccCC-ccchhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          317 CVHMFLYSVAW------SSWVPYAAAV-FSILSVFSHPCLRTIVSKQVAS-NEQGKAQGCISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       317 ~i~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  388 (396)
                      .+.........      .....+...+ .++..+...+...+...+..++ +++++.+++.+...++|..++|.+.|.++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~  364 (390)
T TIGR02718       285 GSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT  364 (390)
T ss_pred             HHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322222111      1111122222 2345667777888887777776 88999999999999999999999999999


Q ss_pred             hccc
Q 016048          389 GDCR  392 (396)
Q Consensus       389 ~~~~  392 (396)
                      |+.+
T Consensus       365 ~~~G  368 (390)
T TIGR02718       365 DRFG  368 (390)
T ss_pred             HHHc
Confidence            9764

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.5e-25  Score=188.74  Aligned_cols=342  Identities=16%  Similarity=0.200  Sum_probs=275.1

Q ss_pred             hHHHHHHHHHHhhc----cccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH
Q 016048            8 SHLFITIFVHCFST----SMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         8 ~~l~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      +.+..+..+..++.    ..+.|.++.+        ++|.++|.+..|+++++..+...+.+++..+++.|+|.++.+..
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~I--------r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~   82 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEI--------RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFL   82 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHH--------HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH
Confidence            44455555555554    4455666655        67889999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHH--
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA--  161 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--  161 (396)
                      ++++.+++.++-... +   .+.++.+-.+.|. +.+......++++.+.+| |+-+..++++....++|..+++.++  
T Consensus        83 ~Llli~~G~~iR~~~-~---~~~L~~gt~l~G~-gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavp  156 (395)
T COG2807          83 ALLLIAAGILIRSLG-G---LPLLFLGTLLAGA-GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVP  156 (395)
T ss_pred             HHHHHHHHHHHHhcc-c---HHHHHHHHHHHHh-hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhH
Confidence            999999999999887 5   6889999999999 999999999999999998 7789999999998888777765544  


Q ss_pred             --HHh-hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCC
Q 016048          162 --RFI-STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS  238 (396)
Q Consensus       162 --~~~-~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
                        ... +||....+-+.++++..+.   ++|...+++.+                      +.+++.++..+.    .++
T Consensus       157 la~~~~gW~~aL~~WAl~allAl~~---WlPq~~r~~~~----------------------~~~~~~~~~~~v----w~~  207 (395)
T COG2807         157 LAQHSGGWRGALGFWALLALLALLI---WLPQALREQAA----------------------SIATKLVSVRKV----WRS  207 (395)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHH---Hhhhccccccc----------------------cccccccccccc----ccC
Confidence              444 7999988888888776653   34543222110                      011111122222    267


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhh-cchhHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLSFGLLFGC  317 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~  317 (396)
                      |.-|...+...++++.+|....|+|.++.|+ |+|+.++|.+.+...+.+++.. +..+.+.+|. ++|+.......++.
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~-ll~P~la~R~~n~r~~~~~~~~~~l  285 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTA-LLIPLLARRSKNQRPLVVLALLLML  285 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHH-HHHHHHHHHhcccchHHHHHHHHHH
Confidence            8888899999999999999999999999997 9999999999999999999999 8889999975 56777777778888


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccC-CccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccCC
Q 016048          318 VHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVA-SNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFS  394 (396)
Q Consensus       318 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  394 (396)
                      ++..-+.+.+........+++|++.+.++|.....+.+..+ +++.++-+|+.+.++++-...||.++|++.|..++-
T Consensus       286 ~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw  363 (395)
T COG2807         286 VGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW  363 (395)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh
Confidence            88887777665444444688899999999999988877764 456788899999999999999999999999988763

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=9.7e-27  Score=214.08  Aligned_cols=333  Identities=15%  Similarity=0.079  Sum_probs=249.2

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhcc
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCE  119 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  119 (396)
                      .+|.+....+.+.+.+++++++++++++.|.+.||++-.+.+....+++++..++....+|   ++.+++.|++.|+ .+
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl-~e  148 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGL-FE  148 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHH-Hh
Confidence            5677788889999999999999999999999999999999999999999988888888888   9999999999999 99


Q ss_pred             chhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhcC
Q 016048          120 GSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----------STSAAFQAATAGSIISAVYMRIFLP  189 (396)
Q Consensus       120 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----------~~~~~f~~~~~~~~~~~~~~~~~~~  189 (396)
                      +..+|....+++.|+.+++|+..++++.+..++|.++|++++..+          +|||.|++.+++.++..++.++++|
T Consensus       149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence            999999999999999999999999999999999999999998762          8999999999999999999989999


Q ss_pred             CCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhh
Q 016048          190 ESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK  269 (396)
Q Consensus       190 e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (396)
                      +.|.+.+   .+++.+.....++.+ ++..+..+++.++++..+.+ +++.++...++.++.....+++.+++|.|+++.
T Consensus       229 ~~P~~~~---fl~~~ek~~~~~~~~-~~~~~~~~~~~~~~~~~~a~-~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~  303 (495)
T KOG2533|consen  229 DNPSKAW---FLTDEEKELVVERLR-ESPSGGIENKFKWKGFKEAL-KDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSN  303 (495)
T ss_pred             CChhhcc---ccchHHHHHHHHHHH-hccCCCcccccCHHHHHHHH-hchhHHHHHHHHHHHhhccccHHHHHHHHHHcC
Confidence            9887542   000000000000000 00001111113455555444 689999999999999999999999999999996


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHhhhhh----hcchhHHHHHHHH-HHHHHHHHHHhhhhhHHHH-HHHHHHhhh
Q 016048          270 FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT----VGEARLLSFGLLF-GCVHMFLYSVAWSSWVPYA-AAVFSILSV  343 (396)
Q Consensus       270 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~g~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~-~~~~~~~~~  343 (396)
                      .|++..+++.+.....++++++. +++++++||    ..+|........+ ..++...+........... ......+..
T Consensus       304 ~~~s~~~a~~ls~~~~~~g~v~~-i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~  382 (495)
T KOG2533|consen  304 GGYSELQANLLSTPYDVGGIVGL-ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLI  382 (495)
T ss_pred             CCcChHHhccccchHHhhhHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhH
Confidence            67999999999999999999999 778899999    4455554444433 3344344444432333333 233344456


Q ss_pred             hhhhhhhHHHhhccCCccchhH-hhhHHHHHHHHHHhhhh
Q 016048          344 FSHPCLRTIVSKQVASNEQGKA-QGCISGICSFANLVSPL  382 (396)
Q Consensus       344 ~~~~~~~~~~~~~~p~~~~g~~-~g~~~~~~~~g~~~~~~  382 (396)
                      ...+......++....+.|... .+........++.++|.
T Consensus       383 ~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~  422 (495)
T KOG2533|consen  383 ATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ  422 (495)
T ss_pred             HHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence            6677788888888765554443 33333334444444443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.95  E-value=2.2e-25  Score=208.82  Aligned_cols=366  Identities=12%  Similarity=0.074  Sum_probs=245.3

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccc-cCCchhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALL   81 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~~   81 (396)
                      +++.++.++...+...++++...+.++.|+.+       +++.+..+.+++.+.+.....+..+++|+++|| +||||++
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~-------~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~   84 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVK-------QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI   84 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence            45667777888888999999999999999766       356666778888898988888888999999999 9999999


Q ss_pred             hHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcc--cchhHHHHHHHhhhhhhHHHHH
Q 016048           82 TVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG--RRASVFGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~  159 (396)
                      +.+.++++++.+.++++.+.  ...++++|.++|+ +.|...|...+++.|.+|++  +|+++++++..+.++|..+||.
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~--~~ll~~~~~l~~i-g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~  161 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLK--PDLIFIALGTIAV-GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLS  161 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHH
Confidence            99999999999999998762  2235589999999 99999999999999999877  4577899999999999999888


Q ss_pred             HHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----cc--ccccccch----------hhhh-hhhhhhhhh
Q 016048          160 SARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDE----DL--YTPILSSK----------AEIS-ASCEESTKK  218 (396)
Q Consensus       160 ~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~----~~--~~~l~~~~----------~~~~-~~~~~~~~~  218 (396)
                      +++++    +||+.|++.++ ..+..++.+...++..++.    ++  .|......          .... .+.......
T Consensus       162 l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (489)
T PRK10207        162 LAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANL  240 (489)
T ss_pred             HHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            87765    89999998655 3333333333334322111    00  01000000          0000 000000000


Q ss_pred             -------------hhhhccCCChhHHhhhhcCChhHHHHHH--HHHHHHHhhhhhhhhHHHHhhhhccccc----cchhh
Q 016048          219 -------------LQVFKRLPSIDDMVHLLKSSPTFSQAAI--VAFLSNLADAGLQGSMMYYLKAKFHFNK----NQFAD  279 (396)
Q Consensus       219 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~  279 (396)
                                   ..++.+ .+  +   .. |+|.+....+  ...+....+......++.|.++..+.+.    -....
T Consensus       241 ~~~~~~~i~~~~f~~~~~~-~~--~---~~-r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~  313 (489)
T PRK10207        241 VLIVLSIVVTIIFFREAFK-LD--K---TG-RNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVS  313 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhc-CC--H---HH-HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHH
Confidence                         000000 01  1   11 2343332222  2333444455555677777775333221    01244


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcchhH-------HHHHHHHHHHHHHHHH-----Hh-----hhhh-HHHHHHHHHHh
Q 016048          280 LMVIAGIAGTISQLIMMPVLAPTVGEARL-------LSFGLLFGCVHMFLYS-----VA-----WSSW-VPYAAAVFSIL  341 (396)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~-------~~~~~~~~~i~~~~~~-----~~-----~~~~-~~~~~~~~~~~  341 (396)
                      +.+.+.+..++.. ++.+++.||+++|+.       +..|.++.+++++.+.     ..     .+.+ ......+.+++
T Consensus       314 ~~~~n~~~iii~~-pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~G  392 (489)
T PRK10207        314 FQALNPFWVVVAS-PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG  392 (489)
T ss_pred             HHhHhHHHHHHHH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            5555666666777 455789999988863       6677777777765432     11     1122 22235667899


Q ss_pred             hhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          342 SVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       342 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                      ..+..|...+.+.+..|++.+|.++|+.+....+|+.++..+.+..
T Consensus       393 e~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        393 ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988777544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.95  E-value=6.9e-32  Score=253.25  Aligned_cols=373  Identities=17%  Similarity=0.221  Sum_probs=249.0

Q ss_pred             HHHHHHHHhhccccccchhhhhhhc---cCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048           11 FITIFVHCFSTSMVAPAITDVTMSA---VCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      .++.+..+++.....+..+......   ......+.+.+..+.++..+...++..+|+++.|.++||+|||+.+..+.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3444777777777666655554221   1111222333667889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcc---CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           88 SIIPLAILAYSR---SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        88 ~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      ..++.++.++++   +   ++.+.++|+++|+ +.|...+....++.|..|+++|++..++.+....+|.+++..++...
T Consensus        86 ~~i~~~~~~~~~~~~~---~~~~~~~R~~~G~-~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNN---FWMLLIGRFLIGF-GIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             cccccccccccccccc---ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   7   9999999999999 99999999999999999999999999999999999988887776533


Q ss_pred             ----h---hHHHHHHHHHHHHHHHHHHHHhcCCCCCC-------cccccccccchhhhhhhhhhhh---hhhhhhccCCC
Q 016048          165 ----S---TSAAFQAATAGSIISAVYMRIFLPESVRD-------EDLYTPILSSKAEISASCEEST---KKLQVFKRLPS  227 (396)
Q Consensus       165 ----~---~~~~f~~~~~~~~~~~~~~~~~~~e~~~~-------~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~  227 (396)
                          +   ||..+.+..++.++..+. ..++||+|+.       +++++.+++.++++.++++.++   +.++.++++.+
T Consensus       162 ~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (451)
T PF00083_consen  162 SYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKAS  240 (451)
T ss_pred             cccccccccccccccccccccccccc-ccccccccceeccccccccccccccccccccccccccccccccccccccccee
Confidence                4   899998888888765554 4789999873       2223344442222111111111   11111111133


Q ss_pred             hhHHhhhhcCChhHHHHHHHHHHHHHhh-hhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcch
Q 016048          228 IDDMVHLLKSSPTFSQAAIVAFLSNLAD-AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA  306 (396)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  306 (396)
                      +++.++..+..++....+.......... .....+.+.+. +..+.+..  -.......+...++. +.+..+.||+|||
T Consensus       241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~-~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~GRr  316 (451)
T PF00083_consen  241 WRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIF-ENAGISNS--FLATLILGLVNFLGT-LLAIFLIDRFGRR  316 (451)
T ss_pred             eeeccccccccccccccccccccccccccccccccccccc-cccccccc--ccccccccccccccc-ccccccccccccc
Confidence            4444322110112222222222222211 22333334333 33466665  122234445556666 4556899999999


Q ss_pred             hHHHHHHHHHHHHHHHHH--H--hhhh-----hHHHH-HHHHHHhhh-hhhhhhhHHHhhccCCccchhHhhhHHHHHHH
Q 016048          307 RLLSFGLLFGCVHMFLYS--V--AWSS-----WVPYA-AAVFSILSV-FSHPCLRTIVSKQVASNEQGKAQGCISGICSF  375 (396)
Q Consensus       307 ~~~~~~~~~~~i~~~~~~--~--~~~~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  375 (396)
                      +++..+...++++.+.++  .  ..+.     ..... ..+.....+ +..+..+.+..|.+|++.|+++.|+....+++
T Consensus       317 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i  396 (451)
T PF00083_consen  317 KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI  396 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence            999999888888777664  1  1111     11111 222222222 45677788999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhhccc
Q 016048          376 ANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       376 g~~~~~~~~g~l~~~~~  392 (396)
                      ++.++|.+...+.+...
T Consensus       397 ~~~i~~~~~~~~~~~~~  413 (451)
T PF00083_consen  397 GGFIIPFLFPYLFNNLG  413 (451)
T ss_pred             ccccccccccccccccc
Confidence            99999999888877653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.95  E-value=4.8e-25  Score=200.27  Aligned_cols=348  Identities=19%  Similarity=0.197  Sum_probs=265.3

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccC-CchhhhHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYG-RKALLTVPIT   86 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-rk~~~~~~~~   86 (396)
                      ..+....++..+..+...|.+|.++++        .+.|..|+|.+.++..+...++++++|.++||++ +||.+.+..+
T Consensus         5 ~rLs~~~f~~f~~~G~~~p~~~~~L~~--------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l   76 (400)
T PF03825_consen    5 FRLSLMYFLYFFAYGAFLPYLPLYLES--------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSL   76 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHH
Confidence            346677788888899999999999654        4688899999999999999999999999999986 5788878888


Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHH-----H
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTIS-----A  161 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~-----~  161 (396)
                      +.++........++   ++.+++.-++..+ ......|...++..+...  ++++-.|-.....++|.+++...     .
T Consensus        77 ~~~~~~~~~~~~~~---f~~~~~~~~l~~~-~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~  150 (400)
T PF03825_consen   77 LSALALLLLAFSSS---FWWLFVIMLLFSF-FFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLG  150 (400)
T ss_pred             HHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHH
Confidence            88887777777788   8888888888887 677778888888888876  34445677777788888777443     2


Q ss_pred             HHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCC
Q 016048          162 RFIST---SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS  238 (396)
Q Consensus       162 ~~~~~---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
                      +..++   ...+++.+...++.... .+.+|+.|++++++                      ++.++...++.++.+ |+
T Consensus       151 ~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~----------------------~~~~~~~~~~~~~ll-k~  206 (400)
T PF03825_consen  151 GYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAK----------------------ESVKKLLGLDALKLL-KN  206 (400)
T ss_pred             hhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccC----------------------CCcccccchHHHHHh-cC
Confidence            22222   24556655555444333 35678876333210                      011112233444445 56


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      |++...++..++........+.+.+.|+++.-|.+....+...+...+.+++.- ...+++.+|+|.++++.++.+..++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a~~~~~v  285 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFF-FFSGRFLKRFGIKWLLLLALVAYAV  285 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            777777778888888888899999999998744777888888888888888887 7778999999999999999999999


Q ss_pred             HHHHHHHh-hhhhHHHHHH-----HHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHH-HHHHHhhhhhhhhhhhcc
Q 016048          319 HMFLYSVA-WSSWVPYAAA-----VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGIC-SFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       319 ~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~~  391 (396)
                      -..++... ++.+......     +-|..++..+.....++.+.+|++.|++++++++... .+|..+|..++|+++|++
T Consensus       286 R~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~  365 (400)
T PF03825_consen  286 RWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF  365 (400)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            99999887 3433333222     3478888889999999999999999999999998875 599999999999999987


Q ss_pred             cCC
Q 016048          392 RFS  394 (396)
Q Consensus       392 ~~~  394 (396)
                      +.+
T Consensus       366 g~~  368 (400)
T PF03825_consen  366 GAR  368 (400)
T ss_pred             cch
Confidence            644

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.95  E-value=8.6e-25  Score=200.94  Aligned_cols=368  Identities=14%  Similarity=0.051  Sum_probs=264.0

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccc----ccCCchh
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGRKAL   80 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grk~~   80 (396)
                      .++..+....+-..+++....+.++.|..        +++.+..+.+++..+..+..++.+|+.|+++|    |+||||.
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~--------~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp   75 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYVQ--------ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP   75 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence            34555667777778888999999999854        35667789999999999999999999999999    5999999


Q ss_pred             hhHH-HHHhHHHHHHHHhccCch--------------hHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccc--hhHH
Q 016048           81 LTVP-ITLSIIPLAILAYSRSRN--------------FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRR--ASVF  143 (396)
Q Consensus        81 ~~~~-~~~~~~~~~~~~~~~~~~--------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r--~~~~  143 (396)
                      +++. .....++..+.+++++..              ..+.++++-.+..+ +.+...+...++++|.+|+++|  +.+.
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~-~~n~~~~p~rALiaDl~p~~~~~~~~a~  154 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDV-ANNMLQGPCRAFLADLTGGDARRTRIAN  154 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCchhHHHHHHH
Confidence            8884 666667777777776511              01233444445555 6677778889999999998865  5789


Q ss_pred             HHHHHhhhhhhHHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 016048          144 GIFSGIVSGAFVCGTISARFI-------------------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSS  204 (396)
Q Consensus       144 ~~~~~~~~~g~~~g~~~~~~~-------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~  204 (396)
                      ++.+...++|.++|+.+++..                   +.|..|++.+++.++..++..+..||.|..++++...+  
T Consensus       155 ~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~--  232 (477)
T TIGR01301       155 AYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS--  232 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh--
Confidence            999999999999999988764                   23678888888888888888888899764322110000  


Q ss_pred             hhhhhhhhhhhhhhhhhhccCCChhHHhhhhcC-ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhh-hccccccc------
Q 016048          205 KAEISASCEESTKKLQVFKRLPSIDDMVHLLKS-SPTFSQAAIVAFLSNLADAGLQGSMMYYLKA-KFHFNKNQ------  276 (396)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~------  276 (396)
                          +.      ++.++.+....+++.++.+++ +|.++.++++.++.+++...+..+.+.|..+ .++-++.+      
T Consensus       233 ----~~------~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~  302 (477)
T TIGR01301       233 ----EA------APPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDD  302 (477)
T ss_pred             ----hc------ccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHH
Confidence                00      000000111234555554433 5678899999999999888888888887664 45433221      


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHhhhhhhcc-hhHHHHHHHHHHHHHHHHHHhhh----------------------h
Q 016048          277 ----FADLMVIAGIAGTISQLIMMPVLAPTVGE-ARLLSFGLLFGCVHMFLYSVAWS----------------------S  329 (396)
Q Consensus       277 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~----------------------~  329 (396)
                          ..+....+++...+.+ ++.+++.+|+|+ |++...+.++.++++....+...                      .
T Consensus       303 gvr~G~~~l~~~s~~~~i~s-~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  381 (477)
T TIGR01301       303 GVRAGAFGLMLNSVVLGITS-IGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKA  381 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHH
Confidence                1233445566666666 556789999985 67778888888888877765432                      1


Q ss_pred             hHHHHHHHHHHhhhhhhhhhhHHHhhccCC--ccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccCC
Q 016048          330 WVPYAAAVFSILSVFSHPCLRTIVSKQVAS--NEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFS  394 (396)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  394 (396)
                      ........+|+..+..+...++++++..|+  +..|..+|+.|.+..+.+.+.....|.+.+.++++
T Consensus       382 ~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~  448 (477)
T TIGR01301       382 SALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG  448 (477)
T ss_pred             HHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            122235566888888999999999999995  45699999999999999999999999976666543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.3e-27  Score=208.77  Aligned_cols=377  Identities=14%  Similarity=0.113  Sum_probs=262.0

Q ss_pred             HHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhH
Q 016048           10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSI   89 (396)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~   89 (396)
                      --.+.+.+.++...+.++.|.+-....+.....-+.++-..+.+..+..+|.++||++.|+++||+|||+++...+++..
T Consensus        46 AG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImI  125 (538)
T KOG0252|consen   46 AGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMI  125 (538)
T ss_pred             hhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHH
Confidence            34567788888888888877776554433333345777788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCc----hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           90 IPLAILAYSRSR----NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        90 ~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      +++++++++...    ...+++...|++.|+ |.|+.+|...++.+|...+++||...+.+.+..+.|.+.|.+++-.+ 
T Consensus       126 i~t~~~~~s~~~~~~~~~m~~L~~~R~~LGi-GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~  204 (538)
T KOG0252|consen  126 ICSALSGLSVGTTSPLGVMMTLCFFRFLLGI-GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVS  204 (538)
T ss_pred             HHHHHhccCCCCCCCcchhhHHHHHHHHhhc-cccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHH
Confidence            999988876432    246889999999999 99999999999999999999999999999888888888887766543 


Q ss_pred             ------------------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc-cccccchhhhhh-----hhhhhhhhhh
Q 016048          165 ------------------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLY-TPILSSKAEISA-----SCEESTKKLQ  220 (396)
Q Consensus       165 ------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~l~~~~~~~~~-----~~~~~~~~~~  220 (396)
                                        -||..|.+.+++++.... .++.+||+++.+.-. +..+...+|...     .++++....+
T Consensus       205 ~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~  283 (538)
T KOG0252|consen  205 AIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY-FRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESD  283 (538)
T ss_pred             HHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccC
Confidence                              388888887777766544 567899998754100 000000000000     0000000111


Q ss_pred             hhccCCChhHHhhhhcCC--hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhh-H---HHHHHH----HH-H
Q 016048          221 VFKRLPSIDDMVHLLKSS--PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFAD-L---MVIAGI----AG-T  289 (396)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~---~~~~~~----~~-~  289 (396)
                      ...++.+.+...+.+.+.  +++.-.+...++.-.+++..+.+....+++. |+.+.+... .   .+..+.    .+ +
T Consensus       284 ~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i-g~~~~~~~~~~~~~vA~~~~iia~~~~v  362 (538)
T KOG0252|consen  284 VPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI-GVIPSANTYHELFKVAEGNLIIAVCSTV  362 (538)
T ss_pred             CCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh-ccCCCcchHHHHHHHHHHHHHHHHHccC
Confidence            111112222222222222  4555566777888888888887777777654 766654333 1   111111    11 1


Q ss_pred             HHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHhhhhhhhhhhHHHhhccCCccch
Q 016048          290 ISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWV------PYAAAVFSILSVFSHPCLRTIVSKQVASNEQG  363 (396)
Q Consensus       290 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  363 (396)
                      .+. .+...++|++|||+....+++++.+..+.++...+...      ....+...++..+-......+.+|.+|.+.||
T Consensus       363 PGy-w~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~  441 (538)
T KOG0252|consen  363 PGY-WFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRS  441 (538)
T ss_pred             Cce-eEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhh
Confidence            122 23346789999999999999999999988887655211      11122333445555667788899999999999


Q ss_pred             hHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          364 KAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       364 ~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      +..|+....+.+|++++...++++.++
T Consensus       442 t~hGIsAA~GK~GAivg~~~F~~~t~~  468 (538)
T KOG0252|consen  442 TCHGISAASGKAGAIVGAFGFLYLTDH  468 (538)
T ss_pred             hhhhHHHHhccchHHHHHHHhhHhhhc
Confidence            999999999999999999999998873

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=6.2e-25  Score=209.55  Aligned_cols=333  Identities=16%  Similarity=0.150  Sum_probs=232.2

Q ss_pred             cchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccch
Q 016048           42 ECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGS  121 (396)
Q Consensus        42 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  121 (396)
                      ....+.....+..+++.+|.++|++++|+++||+|||++++.+.++..++.+..++++|   ++.+++.|++.|+ +.++
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~-~~~~  187 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGF-FGSG  187 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hccc
Confidence            34456678899999999999999999999999999999999999999999999999999   9999999999999 8899


Q ss_pred             hhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc--
Q 016048          122 IHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--STSAAFQAATAGSIISAVYMRIFLPESVRDEDL--  197 (396)
Q Consensus       122 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~--  197 (396)
                      .......+++|+.++++|+.+..+ ......+..+++..++++  +||+.+++..++..+..++ ++..||+|+....  
T Consensus       188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g  265 (521)
T KOG0255|consen  188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKG  265 (521)
T ss_pred             hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcC
Confidence            999999999999999999999999 666666666666666555  7999999999988877665 5666799874221  


Q ss_pred             -----ccccccchhh----hhhh--hhhhhhhhhhh----ccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhH
Q 016048          198 -----YTPILSSKAE----ISAS--CEESTKKLQVF----KRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSM  262 (396)
Q Consensus       198 -----~~~l~~~~~~----~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (396)
                           .+.+++..+.    ....  .+.....+..+    +++..+.+.+    +.++++...+...+..+.......-+
T Consensus       266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~l~~~~~~~~~~~~~~~~~y~gl  341 (521)
T KOG0255|consen  266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLF----RTPRLRYRTLYLLFIWFVFSLVYYGL  341 (521)
T ss_pred             chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhh----cCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence                 1122221110    0000  00000001111    1112233332    34434333333333332222222222


Q ss_pred             HHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhH---HHHH-HHH
Q 016048          263 MYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWV---PYAA-AVF  338 (396)
Q Consensus       263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~-~~~  338 (396)
                      +... ..+|-+.   .......+....... ...+...|+.|||.....+..+..++++...+......   .+.. .+.
T Consensus       342 ~~~~-~~lg~~~---~~~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (521)
T KOG0255|consen  342 SLNV-SGLGGNI---YLNFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLG  416 (521)
T ss_pred             hhhh-hhcCchH---HHHHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            2222 2223322   333444445666666 56578899999999999999999999999888765332   3333 333


Q ss_pred             HHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          339 SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      ..+.+..+...+.+..|.+|+..|..+.+..+....++++++|.+.-....
T Consensus       417 ~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  417 KFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455666777779999999999999999999999999999999988754433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=4.1e-25  Score=187.61  Aligned_cols=336  Identities=13%  Similarity=0.059  Sum_probs=236.1

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhcc
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCE  119 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  119 (396)
                      +..++.+.-+..++......+..+++..+|..+|++|||+.+....+...+...+.+.++|   +.++.+.|.+.|+ |.
T Consensus       105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~-g~  180 (528)
T KOG0253|consen  105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGF-GV  180 (528)
T ss_pred             HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhc-cC
Confidence            5567788889999999999999999999999999999999999999999999999999999   9999999999999 88


Q ss_pred             chhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 016048          120 GSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF----ISTSAAFQAATAGSIISAVYMRIFLPESVRDE  195 (396)
Q Consensus       120 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~----~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~  195 (396)
                      |+ .|...++-.|..|..+|..-+-.. ..+.+|.+....++..    +||||.......+..+.+.. .+++||+|+..
T Consensus       181 gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f-~~w~~ESpRf~  257 (528)
T KOG0253|consen  181 GG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARF-LVWVYESPRFY  257 (528)
T ss_pred             CC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHH-HhhcccCcchh
Confidence            88 789999999999999998876666 8889998888777654    49999888877655555554 47899999732


Q ss_pred             ----cccc---ccccch----------------hhhhhhhhhhh---hhhhhhccCCChhHHhhhhcCChhHHHHHHHHH
Q 016048          196 ----DLYT---PILSSK----------------AEISASCEEST---KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAF  249 (396)
Q Consensus       196 ----~~~~---~l~~~~----------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (396)
                          +..+   .+++..                .+..++++.+.   ..+..++...+..+++.--. ++.-..+....+
T Consensus       258 ~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~l-rkttlllw~iwf  336 (528)
T KOG0253|consen  258 LAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKL-RKTTLLLWRIWF  336 (528)
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHH-HHHHHHHHHHHH
Confidence                1111   122210                01111111010   11111222223333331100 122223344445


Q ss_pred             HHHHhhhhhhhhHHHHhh-----------------hhc--cccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHH
Q 016048          250 LSNLADAGLQGSMMYYLK-----------------AKF--HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS  310 (396)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~-----------------~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  310 (396)
                      ...+.+++..-......+                 ...  ..+...--.=.....+....|. ++.+++.||+|||+.+.
T Consensus       337 gnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGl-LIt~~iverlGRKkTMa  415 (528)
T KOG0253|consen  337 GNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGL-LITGVIVERLGRKKTMA  415 (528)
T ss_pred             hhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCch-hHHHHHHHHhcchhHHH
Confidence            555555554332222222                 110  0111111111345677788888 77789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhh
Q 016048          311 FGLLFGCVHMFLYSVAWSSW-VPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAF  384 (396)
Q Consensus       311 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~  384 (396)
                      .++++++++.+++....+.. .....+..-++..+.+...+.|..|++|+..|+++.|..+.++++|+++.|.++
T Consensus       416 l~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  416 LSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence            99999999888877655433 233345556777888899999999999999999999999999999999999887

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.1e-24  Score=202.73  Aligned_cols=347  Identities=15%  Similarity=0.124  Sum_probs=264.6

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHH-HHHHHhhhc
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYV-LRTLTAMVC  118 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~  118 (396)
                      +++++.+..+.+|+.++......+..|+.+.+.||+|.|++.+++.++..++.++..++++   +|.+++ .-++.|+ |
T Consensus        73 ~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~-G  148 (509)
T KOG2504|consen   73 MDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGL-G  148 (509)
T ss_pred             HHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhc-c
Confidence            4455666677999999999999999999999999999999999999999999999999999   777665 5677788 8


Q ss_pred             cchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 016048          119 EGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRD  194 (396)
Q Consensus       119 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  194 (396)
                      .+..+......+..+++ |+|+.+.|+...+.++|.++-|.+..++    |||+.+++.+.+.+-..+......|.+++.
T Consensus       149 ~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~  227 (509)
T KOG2504|consen  149 LGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPK  227 (509)
T ss_pred             chhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            89998888999998776 8999999999999999988887777654    999999999988877777665665633332


Q ss_pred             ccc-c----------ccc-----ccc-hhhhhhhh---hhhhhhhhhhccCC--ChhHHhh----hhcCChhHHHHHHHH
Q 016048          195 EDL-Y----------TPI-----LSS-KAEISASC---EESTKKLQVFKRLP--SIDDMVH----LLKSSPTFSQAAIVA  248 (396)
Q Consensus       195 ~~~-~----------~~l-----~~~-~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~  248 (396)
                      .+. .          +..     ++. .++....+   ....+.++.+++..  +.+..+.    .+.+++.++...+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~  307 (509)
T KOG2504|consen  228 KPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSN  307 (509)
T ss_pred             CchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHH
Confidence            111 0          000     000 00000000   00000000000000  1111111    133578898888888


Q ss_pred             HHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhc--chhHHHHHHHHHHHHHHHHHHh
Q 016048          249 FLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG--EARLLSFGLLFGCVHMFLYSVA  326 (396)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~  326 (396)
                      .+....+.....++|.|..+ .+++..+++.+++..++..++++ ++.|++.|+..  ++.+..++.+..+++....+..
T Consensus       308 ~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gR-i~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~  385 (509)
T KOG2504|consen  308 LFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGR-IILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA  385 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhh-hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999985 59999999999999999999999 77789999976  4556667777777777777777


Q ss_pred             hhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          327 WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       327 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      .+.+.... ..++|+..+.........+.|+++.++-..+.|+...++.++..+||++.|.+.|...+
T Consensus       386 ~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~  453 (509)
T KOG2504|consen  386 TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGN  453 (509)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCC
Confidence            77765555 56667777777777778999999999999999999999999999999999999988764

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.93  E-value=2.4e-23  Score=196.18  Aligned_cols=361  Identities=12%  Similarity=0.054  Sum_probs=231.2

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccc-cCCchhhh
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALLT   82 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~~~   82 (396)
                      ++.++.++...+...++.....+.++.|+.+       +++.+..+.+++.+.+........+++|+++|| +|||+.+.
T Consensus        20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-------~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~   92 (500)
T PRK09584         20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVK-------QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM   92 (500)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            4457778888889999988888888988765       455666677777777766666666789999999 59999999


Q ss_pred             HHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCccc--chhHHHHHHHhhhhhhHHHHHH
Q 016048           83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGR--RASVFGIFSGIVSGAFVCGTIS  160 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~  160 (396)
                      .+.++.+++..+++++++.  .+.+.++|.++|+ +.|...+...+++.|++|+++  |..++++++...++|..+||.+
T Consensus        93 ~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gi-g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i  169 (500)
T PRK09584         93 LGAIVLAIGYALVAWSGHD--AGIVYMGMATIAV-GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHH-hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence            9999999999999887531  5667788999999 888888888999999998654  4567888899999999999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHH---HHHHHhcCCCCCCccc--ccccccch-----------hh-hhhhhhhhhh--
Q 016048          161 ARFI----STSAAFQAATAGSIISA---VYMRIFLPESVRDEDL--YTPILSSK-----------AE-ISASCEESTK--  217 (396)
Q Consensus       161 ~~~~----~~~~~f~~~~~~~~~~~---~~~~~~~~e~~~~~~~--~~~l~~~~-----------~~-~~~~~~~~~~--  217 (396)
                      ++++    +||+.|.+.++...+..   +.....++|.+++.++  .|..+...           .. ...+.+....  
T Consensus       170 ~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (500)
T PRK09584        170 TPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMAL  249 (500)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            8876    89999998876444432   2233344543221111  11000000           00 0000000000  


Q ss_pred             --------hh-hhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhh----hc-----cccccchhh
Q 016048          218 --------KL-QVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKA----KF-----HFNKNQFAD  279 (396)
Q Consensus       218 --------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----g~~~~~~~~  279 (396)
                              .. .....+.+..+      ++| ....+. .+.....++......+.++..    ..     |+. ...++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~  320 (500)
T PRK09584        250 GVVALGIVVIFGKEAFAMKGAA------RRK-MIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQ  320 (500)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHH------HHH-HHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHH
Confidence                    00 00000000001      112 221111 222223333344444444332    11     211 12466


Q ss_pred             HHHHHHHHHHHHHHHHH----HhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh---------h-hHHHHHHHHHHhhhhh
Q 016048          280 LMVIAGIAGTISQLIMM----PVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS---------S-WVPYAAAVFSILSVFS  345 (396)
Q Consensus       280 ~~~~~~~~~~~~~~~~~----~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~  345 (396)
                      +.+...+..++.. ++.    +++.+|.+..+.+.++.++.+++++.+.....         . +......+.+++....
T Consensus       321 ~~s~n~i~iil~~-p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~  399 (500)
T PRK09584        321 YQALNPFWIMIGS-PILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMI  399 (500)
T ss_pred             HHHHhHHHHHHHH-HHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence            6677777777776 333    34444555557788889999999888776544         2 3344467779999999


Q ss_pred             hhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhh
Q 016048          346 HPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAF  384 (396)
Q Consensus       346 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~  384 (396)
                      .|...+++.+..|++.||+++|.......+|..++..+.
T Consensus       400 ~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        400 SGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999977666665555554444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.93  E-value=8.4e-23  Score=189.07  Aligned_cols=328  Identities=15%  Similarity=0.164  Sum_probs=249.2

Q ss_pred             HHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH-HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHH
Q 016048           47 IYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV-PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCL  125 (396)
Q Consensus        47 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  125 (396)
                      .+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++....+.+ +..++...+..++.-+ +.+.....
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~-~~~~~~~~~l~iia~v-~~~~~~vf  146 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS-PGQWWLALVLFIIANV-GYEASNVF  146 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHH-HHHHHHHH
Confidence            4566889999999999999999999999987666655 5555556666666652 2224555555666665 66777788


Q ss_pred             HHHHHhcCCCcccc--------------------------hhHHHHHHHhhhhhhHHHHHHHHHh------------hhH
Q 016048          126 SLAYVADNVPPGRR--------------------------ASVFGIFSGIVSGAFVCGTISARFI------------STS  167 (396)
Q Consensus       126 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~------------~~~  167 (396)
                      ..+++.|..+++++                          ++..+.-.....+|.++.-++.-.+            +-|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            99999999999988                          8888887777777777665554332            137


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHH
Q 016048          168 AAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIV  247 (396)
Q Consensus       168 ~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (396)
                      ..+.+.++..++..+...+++||.|+.++.++                 ..+.....-+..++.++.+++.|.....+++
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~-----------------~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia  289 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPS-----------------GSSYLRFGFKRLWRTFKEIRKLRQLFLFLIA  289 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCc-----------------chhHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence            78888888888888888888998876322100                 0000001111233344556678889999999


Q ss_pred             HHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcch--hHHHHHHHHHHHHHHHHHH
Q 016048          248 AFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA--RLLSFGLLFGCVHMFLYSV  325 (396)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~~~~~~~~~i~~~~~~~  325 (396)
                      .++..-+...+......|.++.+|++..+...+.....+.++++. ++.+++.||+|.|  +++..+.....+..+.-.+
T Consensus       290 ~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga-~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~  368 (477)
T PF11700_consen  290 YFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGA-LLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLF  368 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHH
Confidence            999998889999999999999999999999999999999999999 7778999999998  7777776665333333222


Q ss_pred             --------hhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccCC
Q 016048          326 --------AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFS  394 (396)
Q Consensus       326 --------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  394 (396)
                              ..+.+..++ ..+.|...+..++...++.+|+.|+++.+..+|++...+...+.+||.+.|.+.+..++.
T Consensus       369 G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~  446 (477)
T PF11700_consen  369 GFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQ  446 (477)
T ss_pred             HhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                    233444444 667789999999999999999999999999999999999999999999999999998754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.93  E-value=7.9e-23  Score=190.49  Aligned_cols=359  Identities=13%  Similarity=0.064  Sum_probs=244.0

Q ss_pred             HhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHh
Q 016048           18 CFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAY   97 (396)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~   97 (396)
                      ++........++.+..| +++..        ...|+.+...++..++.++.|+++|.+|||..++.+.++..+|.++++.
T Consensus        57 ~~~~~~~a~~l~~I~~d-iG~~~--------~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at  127 (599)
T PF06609_consen   57 YFVLVLPASILPYINAD-IGGSD--------NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT  127 (599)
T ss_pred             HHHHhccHHHHHHHHHh-cCCCc--------cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence            34444445556655333 33221        3477888899999999999999999999999999999999999999999


Q ss_pred             ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHH
Q 016048           98 SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAA  173 (396)
Q Consensus        98 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~  173 (396)
                      ++|   ...++++..+.|+ +.|... .....++|..|.|.|....++.....-.....+|.++..+    +|||.|++.
T Consensus       128 A~~---~~~~iag~~l~Gv-gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~  202 (599)
T PF06609_consen  128 AQN---MNTFIAGMVLYGV-GAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF  202 (599)
T ss_pred             CCc---HHHHHHHHHHHHH-hhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence            999   9999999999999 765554 5667799999999998877776665555555677777654    799999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCccc------ccccccc-----------------------hh-hhhhhhhhhh-------
Q 016048          174 TAGSIISAVYMRIFLPESVRDEDL------YTPILSS-----------------------KA-EISASCEEST-------  216 (396)
Q Consensus       174 ~~~~~~~~~~~~~~~~e~~~~~~~------~~~l~~~-----------------------~~-~~~~~~~~~~-------  216 (396)
                      .+...+.+++..++...+++++.+      ++.+++.                       .. ..+++.+...       
T Consensus       203 ~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~  282 (599)
T PF06609_consen  203 IIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV  282 (599)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH
Confidence            888777665544443322221111      1122220                       00 0111111000       


Q ss_pred             ------hhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc---chhhHHHHHHHH
Q 016048          217 ------KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKN---QFADLMVIAGIA  287 (396)
Q Consensus       217 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~  287 (396)
                            -.+.....++++.. .++++++|.+...+++.++....++....+.|......++-++.   ..++.....+.+
T Consensus       283 ~Lv~F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg  361 (599)
T PF06609_consen  283 LLVAFVVWEWFGAPKDPLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFG  361 (599)
T ss_pred             HHHHHHHhhhhccCCCCcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHH
Confidence                  00111111222221 12344446677777777777777788888888888777776653   567777888888


Q ss_pred             HHHHHHHHHHhhhhhhcc-hhHHHHHHHHHHHHHHHHHHhh--hhhH-HHHHHHHHHhhhhhhhhhhHHHhhccCCccch
Q 016048          288 GTISQLIMMPVLAPTVGE-ARLLSFGLLFGCVHMFLYSVAW--SSWV-PYAAAVFSILSVFSHPCLRTIVSKQVASNEQG  363 (396)
Q Consensus       288 ~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  363 (396)
                      ..++. .+.+.+..+++| |+.+..+..++.+++.++....  +... ....++.+++.+..........+-.+|+++-|
T Consensus       362 ~~~g~-~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig  440 (599)
T PF06609_consen  362 SCAGA-VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIG  440 (599)
T ss_pred             HHHHH-HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHH
Confidence            88888 556778887776 4455567666666655555432  2222 22245557777777777777778889999999


Q ss_pred             hHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          364 KAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       364 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ++.|+...++.+|+.++..+...++..-.
T Consensus       441 ~a~gL~~s~R~~GGsIg~aIy~~I~~n~~  469 (599)
T PF06609_consen  441 TATGLTGSIRSIGGSIGYAIYNAIFTNKL  469 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence            99999999999999999999988876543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.93  E-value=4.6e-23  Score=193.89  Aligned_cols=351  Identities=13%  Similarity=0.086  Sum_probs=240.1

Q ss_pred             HHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccc----ccCC-chhhhHHHH
Q 016048           12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGR-KALLTVPIT   86 (396)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Gr-k~~~~~~~~   86 (396)
                      ++.+...+..++..+.++.|..+       .+++++.+.|.+..+..+..++..|+.|.++|    |+|| |+.++.+..
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~-------v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i   85 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTD-------VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL   85 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH
Confidence            44455566667777777888655       45788899999999999999999999999999    6699 455555777


Q ss_pred             HhHHHHHHHHhccCc---hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCC-CcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           87 LSIIPLAILAYSRSR---NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV-PPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                      ..+++..+....++.   ..+..+++...+.++ +.....+...++..|.+ ++++|.+..+......++|..+.+.+..
T Consensus        86 ~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~  164 (473)
T PRK10429         86 ANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGM-TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL  164 (473)
T ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHH-HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776666443321   124455666667677 66777778889999998 5889999988877666766555443322


Q ss_pred             H----h-------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHH
Q 016048          163 F----I-------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDM  231 (396)
Q Consensus       163 ~----~-------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (396)
                      .    +       +|+....+.+++.++..+...+..||.++++++                     +++++++.++++.
T Consensus       165 ~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~---------------------~~~~~~~~~~~~~  223 (473)
T PRK10429        165 PFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQ---------------------VSAEGSHLTLKDI  223 (473)
T ss_pred             HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccc---------------------ccccccCCCHHHH
Confidence            1    2       344455555555555444454445664322110                     0011223457777


Q ss_pred             hhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHH
Q 016048          232 VHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSF  311 (396)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  311 (396)
                      ++.++++|.++..+...++..........+.++|.+...+ ++...+.+.....+..+++. ++.+++.||+|+|+.+..
T Consensus       224 ~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gkk~~~~~  301 (473)
T PRK10429        224 VALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTL-ILFPRLVKSLSRRILWAG  301 (473)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHH
Confidence            7767688888888887777777666666666656554433 44555666666678888888 667899999999999888


Q ss_pred             HHHHHHHHHHHHHHh----h-hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccC-------CccchhHhhhHHHHHHHHHH
Q 016048          312 GLLFGCVHMFLYSVA----W-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANL  378 (396)
Q Consensus       312 ~~~~~~i~~~~~~~~----~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~  378 (396)
                      +..+..++.+.+...    + +.+...+ ..+.+++.+...+...++++|..|       .+..|..+|..+....++..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~a  381 (473)
T PRK10429        302 ASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSA  381 (473)
T ss_pred             HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHH
Confidence            877666555444321    1 2222222 445567778888888999999976       33456699999999999999


Q ss_pred             hhhhhhhhhhhcccC
Q 016048          379 VSPLAFSPLTGDCRF  393 (396)
Q Consensus       379 ~~~~~~g~l~~~~~~  393 (396)
                      +++.+.|.+++..+.
T Consensus       382 l~~~i~g~~l~~~Gy  396 (473)
T PRK10429        382 FAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999987643

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.93  E-value=1.6e-23  Score=186.74  Aligned_cols=358  Identities=15%  Similarity=0.115  Sum_probs=252.8

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      |+++.+......++..+.++...|..|.++++       +.|++..++|.+.++..+..++.+|+.|.++||+|.||-++
T Consensus         5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~-------~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll   77 (412)
T PF01306_consen    5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQ-------VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLL   77 (412)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHH
Confidence            45577788888899999999999999999765       35789999999999999999999999999999999777655


Q ss_pred             HHHHHhH---HHHHHHHh----ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhH
Q 016048           83 VPITLSI---IPLAILAY----SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFV  155 (396)
Q Consensus        83 ~~~~~~~---~~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  155 (396)
                      .......   .......+    ..|  .+...+++-...|+ ......|+..+++.++.  ++.+.-.|-.....++|.+
T Consensus        78 ~~i~~l~~l~~pff~~v~~pll~~n--~~lg~iig~i~l~~-~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~a  152 (412)
T PF01306_consen   78 WFIAILLLLFGPFFIYVFGPLLQSN--FWLGAIIGGIYLGL-VFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFA  152 (412)
T ss_dssp             HHHHHHHHTCHHHHHHTHHHHHHTT---HHHHHHTTTTTTT-TTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHH
Confidence            4332221   12222122    122  02334444455566 55666778888877765  4445567788889999999


Q ss_pred             HHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHh
Q 016048          156 CGTISARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMV  232 (396)
Q Consensus       156 ~g~~~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (396)
                      ++..++|.+   +.+..||+.....++..++..+..|+.+++.+.++                  .+..++++.+.++..
T Consensus       153 i~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~  214 (412)
T PF01306_consen  153 IASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD------------------ALGAKKDKVSLKDVL  214 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST------------------TSSS------HHHHH
T ss_pred             HHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc------------------ccccCCCCCcHHHHH
Confidence            999999876   45677887666655555544344444333222110                  111122333566666


Q ss_pred             hhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhc---cccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHH
Q 016048          233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKF---HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLL  309 (396)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  309 (396)
                      +.+ |+|++|...+........+......++.|..+.+   +.++...|.+.+..-+...+.. .+.+++.+|+|.|+.+
T Consensus       215 ~l~-k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k~~L  292 (412)
T PF01306_consen  215 SLF-KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGAKNLL  292 (412)
T ss_dssp             HHT-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHH
T ss_pred             HHh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcChHhHH
Confidence            655 5788887777666666666777666777776543   4556678999998888888888 7889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHhhhhhhhhhhHHHhhccCCccchhHhhhH-HHHHHHHHHhhhhhhhhh
Q 016048          310 SFGLLFGCVHMFLYSVAWSSWVPYAAAVF-SILSVFSHPCLRTIVSKQVASNEQGKAQGCI-SGICSFANLVSPLAFSPL  387 (396)
Q Consensus       310 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l  387 (396)
                      .++..++.+-....++.++++.....=++ +.-.........-++.+.+|++..++.+.+. +...++|..+.+.+.|.+
T Consensus       293 llag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~l  372 (412)
T PF01306_consen  293 LLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYL  372 (412)
T ss_dssp             HHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence            99999999999999998888776664444 6667788889999999999999999999986 677889999999999999


Q ss_pred             hhccc
Q 016048          388 TGDCR  392 (396)
Q Consensus       388 ~~~~~  392 (396)
                      +|+.+
T Consensus       373 yd~~G  377 (412)
T PF01306_consen  373 YDRIG  377 (412)
T ss_dssp             HHHHH
T ss_pred             HhhcC
Confidence            99875

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09669 putative symporter YagG; Provisional

Probab=99.92  E-value=2.3e-22  Score=188.06  Aligned_cols=337  Identities=13%  Similarity=0.061  Sum_probs=221.8

Q ss_pred             ccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccc----cCCchh-hhHHHHHhHHHHHHH
Q 016048           21 TSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK----YGRKAL-LTVPITLSIIPLAIL   95 (396)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~~-~~~~~~~~~~~~~~~   95 (396)
                      .......++.+..+       +++++..+.|.+.++..+..++..|+.|.++||    +||||. ++.+.+..+++..+.
T Consensus        25 ~~~~~~~l~~~~t~-------~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~   97 (444)
T PRK09669         25 WQTVMLFLAYFYTD-------VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT   97 (444)
T ss_pred             HHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence            34444555555444       578899999999999999999999999999998    788555 445767777777665


Q ss_pred             HhccCc---hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCC-CcccchhHHHHHHHhhhhhhHHHHHHH----HHh---
Q 016048           96 AYSRSR---NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV-PPGRRASVFGIFSGIVSGAFVCGTISA----RFI---  164 (396)
Q Consensus        96 ~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~----~~~---  164 (396)
                      ...++.   ..++.+++...+.+. +.........++.+|+. ++++|++..+.......+|..+++.+.    ..+   
T Consensus        98 f~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~  176 (444)
T PRK09669         98 FYTPDFGATGKIIYACVTYILLSL-VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKG  176 (444)
T ss_pred             HhCCCCCcchHHHHHHHHHHHHHH-HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            555431   124556666666676 55566667788999998 457899888888877777776665433    222   


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChh
Q 016048          165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPT  240 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (396)
                          +|+..+.+.+++..+..+..++..+|.+++++                          +++.+.++.++.+.++|.
T Consensus       177 ~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~--------------------------~~~~~~~~~~~~~~~n~~  230 (444)
T PRK09669        177 DEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV--------------------------DNSSSVWKDLKLLLGNSQ  230 (444)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC--------------------------cCCCCHHHHHHHHhCCch
Confidence                46666666666666655545444455322111                          011223333444456787


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHH
Q 016048          241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM  320 (396)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~  320 (396)
                      ++..+...++............++|.+...+. ++..+.......+..+++. ++.+++.||+|+|+....+.....+..
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gk~~~~~~~~~~~~~~~  308 (444)
T PRK09669        231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGA-LLSERLLGKFDRVRAFKWTIVAFVILS  308 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            87777666665555544444444444443332 2233444444456666666 677899999999999888776655443


Q ss_pred             HHHHHh-h-hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCC-------ccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          321 FLYSVA-W-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVAS-------NEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       321 ~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ..+... . +.+...+ ..+.+++.+...+...++++|..+.       +..|..+|..+....+|..++|.+.|.+++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        309 ALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             HHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333222 2 2332233 4556888888889999999998862       3356788999999999999999999999987


Q ss_pred             ccC
Q 016048          391 CRF  393 (396)
Q Consensus       391 ~~~  393 (396)
                      .+-
T Consensus       389 ~Gy  391 (444)
T PRK09669        389 VDY  391 (444)
T ss_pred             cCC
Confidence            654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.92  E-value=7.1e-23  Score=178.61  Aligned_cols=354  Identities=11%  Similarity=0.075  Sum_probs=269.2

Q ss_pred             ccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH-HHHHhHHHHHHHHhcc
Q 016048           21 TSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV-PITLSIIPLAILAYSR   99 (396)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~-~~~~~~~~~~~~~~~~   99 (396)
                      .-....+.|.|+.+....+..+..-+....|+..++..+..++.+|+.|.++|+.|+||.... ...+..++..+..+.+
T Consensus        31 ~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~  110 (438)
T COG2270          31 AIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIP  110 (438)
T ss_pred             eeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhC
Confidence            345566778888886544333444455678999999999999999999999999997666555 5555556666667776


Q ss_pred             CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHH--HHh-------------
Q 016048          100 SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA--RFI-------------  164 (396)
Q Consensus       100 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~~-------------  164 (396)
                      +...++..++...+..+ +.....+...+++.|..++++-++..+.-.....+|.++.-+..  ...             
T Consensus       111 ~~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~  189 (438)
T COG2270         111 PGSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLG  189 (438)
T ss_pred             CCchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeec
Confidence            63336667777888888 88888889999999999998888876665555555555443322  111             


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcC
Q 016048          165 -------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKS  237 (396)
Q Consensus       165 -------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (396)
                             .-|..+.+.++..++..+...+..||.++..++.                   .+...+.-++.++.++..++
T Consensus       190 l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~-------------------~~~l~~g~k~L~~t~k~i~~  250 (438)
T COG2270         190 LPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPP-------------------PTALRNGFKELKSTFKEIRG  250 (438)
T ss_pred             cCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccc-------------------hHHHHHHHHHHHHHHHHHhc
Confidence                   2377888888888888887777777765432110                   00000111123333444557


Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC  317 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  317 (396)
                      ++++...+++.++..-........-..|....+|++..+...+.....+.+++++ ++.|++.||+|.|+++..+.++..
T Consensus       251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~-ii~g~Ld~rfg~k~vl~~~lvi~~  329 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGA-IIAGFLDERFGSKPVLMIGLVILS  329 (438)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCceeehHHHHHHH
Confidence            7888888999998888888888888999998999999999999999999999999 788899999999999999988877


Q ss_pred             HHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccCCC
Q 016048          318 VHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRFSS  395 (396)
Q Consensus       318 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~  395 (396)
                      +..+...+.......+. .++++...+..+....++..+++|+++.++.+|+++..++..+.++|.+.+.+.+.+++.+
T Consensus       330 ~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r  408 (438)
T COG2270         330 IAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSR  408 (438)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchh
Confidence            77666655554444444 5777999999999999999999999999999999999999999999999999999887653

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.92  E-value=7.4e-23  Score=183.40  Aligned_cols=334  Identities=10%  Similarity=0.057  Sum_probs=223.0

Q ss_pred             CCcchhHHHH-HHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhc
Q 016048           40 RDECSLAIYL-SGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVC  118 (396)
Q Consensus        40 ~~~~~~s~~~-~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  118 (396)
                      .++++++..+ .|.+.++++.++++++++.|+++||+|.|+++.++.+.+++..++.+++++   ++.+.+.|++.|+ +
T Consensus        53 ~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGv-a  128 (511)
T TIGR00806        53 LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSV-T  128 (511)
T ss_pred             HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-H
Confidence            3367888888 999999999999999999999999999999999999999999999999999   9999999999999 9


Q ss_pred             cchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh---hhHHHHHH---HHHHHHHHHHHHHHhcCCCC
Q 016048          119 EGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI---STSAAFQA---ATAGSIISAVYMRIFLPESV  192 (396)
Q Consensus       119 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~---~~~~~f~~---~~~~~~~~~~~~~~~~~e~~  192 (396)
                      .|... +...++.+|+|+++|+++.++...+..+|.++++++++.+   +||+-+.+   ......+ .++..+++|..+
T Consensus       129 EA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~-a~~~a~~LP~~~  206 (511)
T TIGR00806       129 MAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTF-SVFLALFLKRPK  206 (511)
T ss_pred             HHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HHHHHHhCCCCc
Confidence            99998 9999999999999999999999999999999999888765   78764433   3332333 344457888544


Q ss_pred             CC-----ccccc-ccccchhhhhhhhhhhhhhhhhhccCC----ChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhH
Q 016048          193 RD-----EDLYT-PILSSKAEISASCEESTKKLQVFKRLP----SIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSM  262 (396)
Q Consensus       193 ~~-----~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (396)
                      +.     +++.+ ......++..+++.....+..+.+...    -+.++.+.. +++.+....+=..+....++...++.
T Consensus       207 ~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y-~n~~vl~WSlWwa~a~~g~~qv~~Y~  285 (511)
T TIGR00806       207 RSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIY-RNPQLLLWSLWWVFNSAGYYLITYYV  285 (511)
T ss_pred             hhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHh-cCcchhhhhHHHHHHhhHHHHHHHHH
Confidence            31     10000 000000000000000000000000001    122222223 34444333333334444445555555


Q ss_pred             HHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcch--hHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHH
Q 016048          263 MYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA--RLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFS  339 (396)
Q Consensus       263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~  339 (396)
                      .....+..+-.+...|..-++..+.+.+.. +..|++-.+..+.  ..+.+..++.+..++++....+.|..+. .+++.
T Consensus       286 Q~LW~~v~~~~~~yNG~veA~~tllga~~a-~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~  364 (511)
T TIGR00806       286 HTLWGTLDESLNKYNGAVDAASTLLGAITS-FIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFR  364 (511)
T ss_pred             HHHHHHcCCCccccCCHHHHHHHHHHHHHH-HHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHH
Confidence            555544322122245777777777777777 6667765544332  3344445555666777777788888777 45557


Q ss_pred             HhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhh
Q 016048          340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSP  381 (396)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~  381 (396)
                      ..+....++....+++....+.-|-.+|+.+++.-+-..+-.
T Consensus       365 ~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT  406 (511)
T TIGR00806       365 GIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIIT  406 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheE
Confidence            778888888888888888878889999988887765554433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.92  E-value=3.7e-23  Score=192.44  Aligned_cols=325  Identities=15%  Similarity=0.123  Sum_probs=252.8

Q ss_pred             cchhHHHHHHHHHHHHhHHHHhhhhccccccc----ccCCchhhh-HHHHHhHHHHHHHHhc-c-Cch---hHHHHHHHH
Q 016048           42 ECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGRKALLT-VPITLSIIPLAILAYS-R-SRN---FFYAYYVLR  111 (396)
Q Consensus        42 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grk~~~~-~~~~~~~~~~~~~~~~-~-~~~---~~~~l~~~r  111 (396)
                      .+++++...|++..+..+..++..|+.|.++|    |+||||.++ .+....+++..++... + +..   ....+.+..
T Consensus        31 ~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~  110 (428)
T PF13347_consen   31 VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFY  110 (428)
T ss_pred             HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHH
Confidence            45788899999999999999999999999999    899876666 5778888887777766 4 111   134456777


Q ss_pred             HHHhhhccchhhHHHHHHHhcCCC-cccchhHHHHHHHhhhhhhHHHHHHHHH----h-------hhHHHHHHHHHHHHH
Q 016048          112 TLTAMVCEGSIHCLSLAYVADNVP-PGRRASVFGIFSGIVSGAFVCGTISARF----I-------STSAAFQAATAGSII  179 (396)
Q Consensus       112 ~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~----~-------~~~~~f~~~~~~~~~  179 (396)
                      ++..+ +.........++..|.++ +++|.+..+.-+....+|.++.+.+...    +       +|++...+.+++.++
T Consensus       111 ~l~~~-~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v  189 (428)
T PF13347_consen  111 ILFDI-AYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV  189 (428)
T ss_pred             HHHHH-hhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence            77787 778888888999999998 5789999998888888877644433332    2       478888888888888


Q ss_pred             HHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhh
Q 016048          180 SAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQ  259 (396)
Q Consensus       180 ~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (396)
                      ..++..+..||.+++.+                        +++++.++++.++.++++|.++......++.........
T Consensus       190 ~~~i~~~~~ke~~~~~~------------------------~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~  245 (428)
T PF13347_consen  190 FFLITFFFVKERSVEVT------------------------EQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMN  245 (428)
T ss_pred             Hhhhhhheeeecccccc------------------------ccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhh
Confidence            77777777888222111                        122333455555666688899988888888888888888


Q ss_pred             hhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh--hhhHHHH-HH
Q 016048          260 GSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW--SSWVPYA-AA  336 (396)
Q Consensus       260 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~-~~  336 (396)
                      ...++|.++..|.+ ...+.......+..+++. ++.+++.||+|+|+....+..+.+++.+.+.+..  +.+...+ ..
T Consensus       246 ~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  323 (428)
T PF13347_consen  246 TFLPYYFTYVLGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFI  323 (428)
T ss_pred             hHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            88888888887777 455777777888888888 6778999999999999999999999988887775  4444444 55


Q ss_pred             HHHHhhhhhhhhhhHHHhhccCC-------ccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          337 VFSILSVFSHPCLRTIVSKQVAS-------NEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      +.+++.+..+....++.+|..+.       ++.|..+|+.+....++..+++.+.|.+.+..+.
T Consensus       324 l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  324 LAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            66888888889999999998873       4469999999999999999999999999887543

>PRK09848 glucuronide transporter; Provisional

Probab=99.91  E-value=7.7e-22  Score=184.81  Aligned_cols=345  Identities=12%  Similarity=0.050  Sum_probs=227.4

Q ss_pred             HHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc----CCchhh-hHHHH
Q 016048           12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY----GRKALL-TVPIT   86 (396)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~----Grk~~~-~~~~~   86 (396)
                      .+.+...+..++..+.++.|..+       ..+++..+.|.+.++..+..++..++.|+++||.    ||||.+ ..+.+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~-------~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~   87 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTD-------VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA   87 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence            34445566666677777777655       4577889999999999999999999999999996    777765 44555


Q ss_pred             HhHHHHHHHHhcc-C---chhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCc-ccchhHHHHHHHh-----hhhhhHH
Q 016048           87 LSIIPLAILAYSR-S---RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP-GRRASVFGIFSGI-----VSGAFVC  156 (396)
Q Consensus        87 ~~~~~~~~~~~~~-~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~-----~~~g~~~  156 (396)
                      ...+...+....+ .   ....+.+++...+.++ +.+...+...++..|..++ ++|.+..+.-..+     ..++..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~  166 (448)
T PRK09848         88 PLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL-CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLI  166 (448)
T ss_pred             HHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH-HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444332111 1   0113334455566777 6677777777777776654 6788776655443     3355666


Q ss_pred             HHHHHHHhhh----HH--HHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhH
Q 016048          157 GTISARFIST----SA--AFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDD  230 (396)
Q Consensus       157 g~~~~~~~~~----~~--~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (396)
                      +|.++...+.    .+  ...+.+++..+..++.....||++++++                           ++.+.++
T Consensus       167 ~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~---------------------------~~~~~~~  219 (448)
T PRK09848        167 GPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIV---------------------------AQPSLKI  219 (448)
T ss_pred             HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCc---------------------------cCCCHHH
Confidence            7776655321    11  1122222222222223333454422111                           0112333


Q ss_pred             HhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHH
Q 016048          231 MVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS  310 (396)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  310 (396)
                      .++.+.++|.+....+..++....+.......|+|.++.+|.++...+.......+..+++. ++.+++.||+++|+.+.
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~r~g~~~~~~  298 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASA-PLVPGMVARIGKKNTFL  298 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHH
Confidence            34445578888888887777777777777778888888888776654444444455666677 67789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCc-------cchhHhhhHHHHHHHHHHhh
Q 016048          311 FGLLFGCVHMFLYSVAW--SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASN-------EQGKAQGCISGICSFANLVS  380 (396)
Q Consensus       311 ~~~~~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~~g~~~~  380 (396)
                      .+..+..++.+.+.+.+  +.+.... ..+.+++.+...+...++.+|..|++       ++|..+|+.+....+|..++
T Consensus       299 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig  378 (448)
T PRK09848        299 IGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG  378 (448)
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence            99888888777666543  2232222 44567888888888999999988754       45999999999999999999


Q ss_pred             hhhhhhhhhccc
Q 016048          381 PLAFSPLTGDCR  392 (396)
Q Consensus       381 ~~~~g~l~~~~~  392 (396)
                      +.+.|.+++..+
T Consensus       379 ~~i~g~~l~~~G  390 (448)
T PRK09848        379 GSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHcC
Confidence            999999987654

>TIGR01272 gluP glucose/galactose transporter

Probab=99.90  E-value=1.2e-21  Score=173.27  Aligned_cols=260  Identities=10%  Similarity=0.114  Sum_probs=199.9

Q ss_pred             HHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-------------------
Q 016048          104 FYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-------------------  164 (396)
Q Consensus       104 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-------------------  164 (396)
                      ++.++++-++.|. |.+...+..+.++++..|+|++.+.+++.+..+++|..+||.+++.+                   
T Consensus        10 ~~~~l~~~f~~g~-G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272        10 YVLFLGALFVLAS-GLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHh-hHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            8999999999999 99999999999999999999999999999999999999999998742                   


Q ss_pred             -hhHHHHHHHHHHHHHHHHH-HHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHH
Q 016048          165 -STSAAFQAATAGSIISAVY-MRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFS  242 (396)
Q Consensus       165 -~~~~~f~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (396)
                       .|+++|++.+.+..+..+. .+..+||.++++++                    +... ++..+.++    ..++|.++
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~--------------------~~~~-~~~~~~~~----~~~~~~~~  143 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA--------------------RVSS-GDTTQKTS----AFQFTHLV  143 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc--------------------cccc-ccccchhh----HHhhHHHH
Confidence             4788888666665544432 22333443221110                    0000 00001111    12466777


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHhhhh--ccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHH
Q 016048          243 QAAIVAFLSNLADAGLQGSMMYYLKAK--FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM  320 (396)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~  320 (396)
                      ...+..+++.....+...|.+.|+.+.  +|+++.+.+...+....+.++++ ++.+++.||+++|+.+..+..+..++.
T Consensus       144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~~~~l~~~~~l~~~~~  222 (310)
T TIGR01272       144 LGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQGRYLAFNAFLAVLLS  222 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            777777888878889999999999864  69999999999999999999999 788899999999999888887777776


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          321 FLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ++....+.....+...+++++.+..+|...+...+..| ++.+++.++. .+..+|+.+.|.+.|.+.|...
T Consensus       223 ~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g  292 (310)
T TIGR01272       223 IGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLG  292 (310)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHH-HHHHhcchHHHHHHHHHHHhcc
Confidence            65555444434444566788899999999999999888 4567777775 6778999999999999999754

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=5.6e-22  Score=181.47  Aligned_cols=367  Identities=32%  Similarity=0.533  Sum_probs=274.3

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcch-hHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECS-LAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      ...+....++..+++++..+..........|....+.+ .+....+.-.....+...+.++..|.++||+|||..+....
T Consensus        20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~   99 (463)
T KOG2816|consen   20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL   99 (463)
T ss_pred             hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence            44566778888888888887777776664443322211 22222233333446788899999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhh-hccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAM-VCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      ..+.+......+..     |++++   +.++ ++.+.......++++|...+++|...+++.+.....+..++|.+++..
T Consensus       100 ~~~~l~~~~~~~~~-----~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~  171 (463)
T KOG2816|consen  100 FGTILPALCLLFQG-----YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYL  171 (463)
T ss_pred             HHHHHhHHHHHHHH-----HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99988888777765     23333   4444 233566678889999999999999999999999999999999998876


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc-ccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCCh
Q 016048          165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYT-PILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSP  239 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (396)
                          +.-..|.+..+..++..+..++++||+..++++.+ ...+...+..          ...+..+..+...+ .+.+|
T Consensus       172 ~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~r  240 (463)
T KOG2816|consen  172 VKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSL----------DSSHVADAFQSLTK-VGPDR  240 (463)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcc----------cchhhhhhhhhhcc-cCCCc
Confidence                66778999999999999999999999876655321 0000000000          00000011111111 22344


Q ss_pred             hHHHHHHHHHHHHHhhhh-hhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          240 TFSQAAIVAFLSNLADAG-LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      ....++...+.......+ ....++.|++.+++++..+.+.+.+..+....+++++..+.+...++.|+.+..|.....+
T Consensus       241 ~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~  320 (463)
T KOG2816|consen  241 LLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFL  320 (463)
T ss_pred             cchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHH
Confidence            454444444444433332 3325578888999999999999999999999999988878899999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          319 HMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ....+++..+.|..+...+.........|...+..+...+++++|+++++...+..+...++|.+.+.++..+.
T Consensus       321 ~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  321 QLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL  394 (463)
T ss_pred             HHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            99999999999999998888888899999999999999999999999999999999999999999999987653

>PTZ00207 hypothetical protein; Provisional

Probab=99.90  E-value=1.6e-21  Score=183.10  Aligned_cols=342  Identities=11%  Similarity=0.065  Sum_probs=236.1

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhc------cCchhHHHHHHHHHH
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS------RSRNFFYAYYVLRTL  113 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~r~l  113 (396)
                      +++++.+..+.+++.++.. ....++++.|+++||+|||+++.++.+++.++.++++++      ++   ++.+++.|++
T Consensus        54 ~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s---~~~l~l~r~l  129 (591)
T PTZ00207         54 QARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS---VVRLSVYNGL  129 (591)
T ss_pred             HHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc---HHHHHHHHHH
Confidence            4466777788888887743 445677789999999999999999999999999999987      45   8999999999


Q ss_pred             HhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHH-HHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 016048          114 TAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVC-GTISARFI--STSAAFQAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       114 ~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~e  190 (396)
                      .|+ +.+...+.....+.+++| ++||++.|+.....++|..+ +++...++  +|+..|++.+++.++..++.+.++++
T Consensus       130 ~G~-G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        130 MTL-GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRL  207 (591)
T ss_pred             HHH-HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence            999 888888888999999997 78999999999999999875 55555555  78888999888888887777677665


Q ss_pred             CCCCc---------ccccccccc-----------------------------------h---------------------
Q 016048          191 SVRDE---------DLYTPILSS-----------------------------------K---------------------  205 (396)
Q Consensus       191 ~~~~~---------~~~~~l~~~-----------------------------------~---------------------  205 (396)
                      +|...         ++++.+++.                                   .                     
T Consensus       208 p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~ll  287 (591)
T PTZ00207        208 PPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLT  287 (591)
T ss_pred             CcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            54211         111110000                                   0                     


Q ss_pred             ---h----------------hhhhhhhhhhh------hhhh------hc-cCCChh-HHhhhhcCChhHHHHHHHHHHHH
Q 016048          206 ---A----------------EISASCEESTK------KLQV------FK-RLPSID-DMVHLLKSSPTFSQAAIVAFLSN  252 (396)
Q Consensus       206 ---~----------------~~~~~~~~~~~------~~~~------~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  252 (396)
                         +                +.+.++.+..+      +++.      .+ ...... ..++.+ ++..+|.+++..++..
T Consensus       288 l~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l-~~~d~Wll~~~~~cg~  366 (591)
T PTZ00207        288 VIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGL-KTARLWCLLWSIFCCV  366 (591)
T ss_pred             HHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHH-hchhHHHHHHHHHHhh
Confidence               0                00000000000      0000      00 000000 233333 4678999999998888


Q ss_pred             HhhhhhhhhHHHHhhhhccccccc--hhhHHHHHHHHHHHHHHHHHHhhhhhhcch--------h-HHHHHHHHHHHHHH
Q 016048          253 LADAGLQGSMMYYLKAKFHFNKNQ--FADLMVIAGIAGTISQLIMMPVLAPTVGEA--------R-LLSFGLLFGCVHMF  321 (396)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--------~-~~~~~~~~~~i~~~  321 (396)
                      .........+.+..+..-|.+.+.  ...+.++.++.+.+|+ +.+|.+.....+|        + .+.+..+ +.++.+
T Consensus       367 g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GR-l~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~l  444 (591)
T PTZ00207        367 GAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGR-LCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITML  444 (591)
T ss_pred             CchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhH-HHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHH
Confidence            877777777777766543553322  2337788999999999 7777766222211        2 2333344 566666


Q ss_pred             HHHHhhh-hhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhh-hhhhhhhhhcc
Q 016048          322 LYSVAWS-SWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVS-PLAFSPLTGDC  391 (396)
Q Consensus       322 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~-~~~~g~l~~~~  391 (396)
                      ++....+ .......++.|+++|..++.....++|++. ++-|+-+-+.....-+|+.+- -.++|.++|.-
T Consensus       445 ll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~e  515 (591)
T PTZ00207        445 TLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQ  515 (591)
T ss_pred             HHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655544 344445778899999999999999999999 999998888887777877776 67888888864

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.88  E-value=6.7e-20  Score=169.43  Aligned_cols=363  Identities=12%  Similarity=0.073  Sum_probs=226.1

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-CCchhhh
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLT   82 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~~~   82 (396)
                      ++.++.++.......++.......+|.|+.+       +++.+..+.+.+.+.+.....++.+++|+++||+ ||||++.
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~-------~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~il   80 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTN-------QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVM   80 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence            3456667778888888888888888988765       3567778899999999999999999999999999 9999999


Q ss_pred             HHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcc--cchhHHHHHHHhhhhhhHHHHHH
Q 016048           83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG--RRASVFGIFSGIVSGAFVCGTIS  160 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~~  160 (396)
                      ++.++..++.++.+..++.  ...+.++..+..+ +.|...+...++++|.+|++  +|...+++.....++|..++|.+
T Consensus        81 iG~il~~lg~lll~~~~~~--~~~~~l~l~li~i-G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l  157 (493)
T PRK15462         81 LGALLMAIGHVVLGASEIH--PSFLYLSLAIIVC-GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA  157 (493)
T ss_pred             HHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH-hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence            9999999998777654321  2223334334444 55666677789999999976  68889999999999999999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc--ccccccccchhhh----------------hhhhhhhhhh
Q 016048          161 ARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDE--DLYTPILSSKAEI----------------SASCEESTKK  218 (396)
Q Consensus       161 ~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~l~~~~~~~----------------~~~~~~~~~~  218 (396)
                      .+++    +||+.|.+.++..++..+.. +..++...+.  .+++..++.+...                ......+...
T Consensus       158 ~g~L~~~~Gw~~~F~iaaigm~l~li~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (493)
T PRK15462        158 CGYAQEEYSWAMGFGLAAVGMIAGLVIF-LCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWS  236 (493)
T ss_pred             HHHHHhhhChHHHHHHHHHHHHHHHHHH-HHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8876    79999988765443333322 2222111110  0000010000000                0000000000


Q ss_pred             h---------------hhhccCCChhHHhhhhcCChh--HHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-----cccccc
Q 016048          219 L---------------QVFKRLPSIDDMVHLLKSSPT--FSQAAIVAFLSNLADAGLQGSMMYYLKAKF-----HFNKNQ  276 (396)
Q Consensus       219 ~---------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~  276 (396)
                      .               ...+.+.+..|      |+|-  +..+++...+....+....+.+..|.+++.     |++- .
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~e------r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p  309 (493)
T PRK15462        237 VYALIVATIIGLGVLAKIYRKAENQKQ------RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-P  309 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-C
Confidence            0               00000011111      1111  222233333444444455556666766543     3332 2


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhc--chh-----HHHHHHHHHHHHHHHHHHhh---------h-hhHHHHHHHHH
Q 016048          277 FADLMVIAGIAGTISQLIMMPVLAPTVG--EAR-----LLSFGLLFGCVHMFLYSVAW---------S-SWVPYAAAVFS  339 (396)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~-----~~~~~~~~~~i~~~~~~~~~---------~-~~~~~~~~~~~  339 (396)
                      ..+..+.+.+..++..++++ ++-.|..  +|.     =...++++.+++++.+....         + .|......+..
T Consensus       310 ~~~~qslNp~~ii~l~P~~a-~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLA-WVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHH-HHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            46777888888888885554 4434442  221     15677788888877765421         1 23333356668


Q ss_pred             HhhhhhhhhhhHHHhhccCCccchhHhhhHHHHH-HHHHHhhhhhhh
Q 016048          340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGIC-SFANLVSPLAFS  385 (396)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~-~~g~~~~~~~~g  385 (396)
                      ++.-+..|...+.++++.|++.+|..+|...... .+|..++..+.+
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~  435 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD  435 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999885433 455555544444

>TIGR00788 fbt folate/biopterin transporter

Probab=99.88  E-value=2.4e-21  Score=181.18  Aligned_cols=361  Identities=11%  Similarity=0.014  Sum_probs=236.4

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccC-----CchhhhH
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYG-----RKALLTV   83 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rk~~~~~   83 (396)
                      .+....+..++. +.....++.++.       ++++++..+.+...+...+...+-.+ +|+++||++     ||+.+++
T Consensus        30 ~~~~~y~~qGl~-~l~~~~~~~~l~-------~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~  100 (468)
T TIGR00788        30 IGLQVLFVKGIA-GLMRLPLSPMLT-------DDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVL  100 (468)
T ss_pred             HHHHHHHHhhHH-HHhhhhhhHHHH-------HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHH
Confidence            334455666666 555555555543       35788889999999999999998655 999999998     7777777


Q ss_pred             HHHHhH-HHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhH---HHHHHHhhhhhhHHHHH
Q 016048           84 PITLSI-IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASV---FGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        84 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~---~~~~~~~~~~g~~~g~~  159 (396)
                      +.++.. +.....+..++  ......+..++.++ +.+...++..++..|..+ |++...   .+......++|.++|+.
T Consensus       101 ~~~l~~~~~~~~l~~~~~--~~~~~~~~~~l~~~-~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~  176 (468)
T TIGR00788       101 SGLLGSAILYGLLPGKVS--SAKVAAAFIFLAAL-AKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSL  176 (468)
T ss_pred             HHHHHHHHHHHhcccccc--hHHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHH
Confidence            776663 43333333334  13444458889998 888888999999999998 554443   23333344578888887


Q ss_pred             HHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhh
Q 016048          160 SARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLL  235 (396)
Q Consensus       160 ~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (396)
                      +++.+    +|+..|++.+++.++. .....++||+++....+.  ++.+..  ..........  +..++..++..+.+
T Consensus       177 l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~--~~~~~~--~~~~~~~~~~--~~~~~~~~~l~~~l  249 (468)
T TIGR00788       177 LGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRI--GTYLEM--NMALLTLGVL--ANVKVQILGLRGAI  249 (468)
T ss_pred             HHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhcccccccccccc--cccchh--hhhhhhhhHH--HHHHHHHHHHHHHH
Confidence            77764    7999999988888776 344577788642111000  000000  0000000000  00011133444443


Q ss_pred             cCChhHHHHHHHHHH-HHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHH
Q 016048          236 KSSPTFSQAAIVAFL-SNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLL  314 (396)
Q Consensus       236 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  314 (396)
                       ++|.++...+..++ ...... .......+..+..|+++.+.|......+++.+++. ...+++.+|++.|+++..+.+
T Consensus       250 -~~~~i~~~l~fifl~~~~~~~-~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~-~~~~~~~~~~~~r~~l~~~~~  326 (468)
T TIGR00788       250 -QLLEIAKPLIFIFLSYANLPG-ASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGV-GGYDRFLKTFPYRLLFGVTTL  326 (468)
T ss_pred             -hcHHHHHHHHHHHHHHhhcCC-CCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHH
Confidence             45666654444444 222211 11111113345679999999999999999999999 666788899999999999998


Q ss_pred             HHHHHHHHHHHh----------hhhhHHH-HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhh
Q 016048          315 FGCVHMFLYSVA----------WSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLA  383 (396)
Q Consensus       315 ~~~i~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~  383 (396)
                      +.+++.+.....          ++.+... ...+.+++.+..+.....++.+.+|++++|+.+++.+.+.++|..+++.+
T Consensus       327 l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~  406 (468)
T TIGR00788       327 LYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFL  406 (468)
T ss_pred             HHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHH
Confidence            888876543211          1111122 24455677777888889999999999999999999999999999999999


Q ss_pred             hhhhhhccc
Q 016048          384 FSPLTGDCR  392 (396)
Q Consensus       384 ~g~l~~~~~  392 (396)
                      +|.+.++.+
T Consensus       407 gg~l~~~~g  415 (468)
T TIGR00788       407 GVLLMETIG  415 (468)
T ss_pred             HHHHHHHcC
Confidence            999998865

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.3e-21  Score=160.73  Aligned_cols=331  Identities=11%  Similarity=0.078  Sum_probs=224.8

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccc-cCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhc
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVC  118 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  118 (396)
                      +.+.+++.++..++.++|.....+...++|++.|| +|-|..-++-+....++.++.+.-.-...+|....+|++.|+ |
T Consensus        71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGI-G  149 (459)
T KOG4686|consen   71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGI-G  149 (459)
T ss_pred             hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeecc-C
Confidence            44566777788899999999999999999999996 588777666666666777666543222229999999999999 6


Q ss_pred             cchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hh------HHHH---HHHHHHHHHHHHHHH
Q 016048          119 EGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----ST------SAAF---QAATAGSIISAVYMR  185 (396)
Q Consensus       119 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~------~~~f---~~~~~~~~~~~~~~~  185 (396)
                      +-..-.+...+...|++.|+.+.++|+......+|..+--.+..++    +-      +...   ...........+...
T Consensus       150 gESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slica  229 (459)
T KOG4686|consen  150 GESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICA  229 (459)
T ss_pred             chhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666778899999999999999999999988888866543333322    10      1111   111111111111010


Q ss_pred             HhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHH
Q 016048          186 IFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYY  265 (396)
Q Consensus       186 ~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (396)
                      .-+--+.++.|  +.++              .++....+..++.+.   ..-+|.+|.+.+..++...+..-+...-|.+
T Consensus       230 l~lg~~D~rAe--rilh--------------~e~g~~Ge~pkLtdv---~~f~ppfw~~~iicv~yyva~fPFi~lg~~f  290 (459)
T KOG4686|consen  230 LSLGLSDDRAE--RILH--------------LEEGFLGEEPKLTDV---NTFYPPFWVLVIICVLYYVAWFPFITLGPMF  290 (459)
T ss_pred             HHhhhhhhHHH--HHHh--------------hhcCcccCCcccccc---cccCccHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            11100000000  0000              000000011111111   1125778888888888888777778888999


Q ss_pred             hhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHH-HHHHHHHHHHhhhhhHHH-HHHHHHHhhh
Q 016048          266 LKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF-GCVHMFLYSVAWSSWVPY-AAAVFSILSV  343 (396)
Q Consensus       266 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~-~~~~~~~~~~  343 (396)
                      .++++|+|+..++.+.+.....+.+.. .+.|.++||.|++.....+..+ ...+-..+.+.  .+..+ .+.++|..+.
T Consensus       291 F~~rfGlS~~~a~~i~s~vy~Isav~s-pvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsys  367 (459)
T KOG4686|consen  291 FQKRFGLSAVSAGNILSTVYGISAVLS-PVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYS  367 (459)
T ss_pred             HHHhhCCChhhccchhhhhhhhhhhhh-hhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHH
Confidence            999999999999999998888888888 6668999999998765554433 33333333222  22233 3666788888


Q ss_pred             hhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      ..-...+..++.++|+++.|++.|.++.++++|-.+.|.+.|.+.|.-++
T Consensus       368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~  417 (459)
T KOG4686|consen  368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS  417 (459)
T ss_pred             HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc
Confidence            87788889999999999999999999999999999999999999987653

>PRK11462 putative transporter; Provisional

Probab=99.87  E-value=7.2e-19  Score=164.44  Aligned_cols=338  Identities=11%  Similarity=0.012  Sum_probs=218.6

Q ss_pred             HHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccc----cCCchhhhH-HHHHhHHH
Q 016048           17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK----YGRKALLTV-PITLSIIP   91 (396)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~~~~~-~~~~~~~~   91 (396)
                      ......+....+..+..+       ..++++...|.+..+.-+--++.-|+.|.++||    +||||.+++ +.+..+++
T Consensus        21 ~~~~~~~~~~~l~~fyt~-------~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~   93 (460)
T PRK11462         21 SHIIFDNVMLYMMFFYTD-------IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIV   93 (460)
T ss_pred             hhHHHHHHHHHHHHHHHH-------hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHH
Confidence            344444555555555444       568889999999999999999999999999995    798776665 66777777


Q ss_pred             HHHHHhccCc---hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCC-cccchhHHHHHHHhhhhhhHHHHHHHHH----
Q 016048           92 LAILAYSRSR---NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-PGRRASVFGIFSGIVSGAFVCGTISARF----  163 (396)
Q Consensus        92 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~----  163 (396)
                      ..++...++.   ..+..+.+...+..+ +.........++.+|.++ ++||++..++...+..+|..+++.+...    
T Consensus        94 ~~llf~~p~~s~~~~~~y~~~~~~~~~~-~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~  172 (460)
T PRK11462         94 CVLAYSTPDLSMNGKMIYAAITYTLLTL-LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL  172 (460)
T ss_pred             HHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666555431   113445566666676 667777778889999987 7899999999998888887776555322    


Q ss_pred             h-------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhc
Q 016048          164 I-------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK  236 (396)
Q Consensus       164 ~-------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (396)
                      .       +|+....+.+++.+++..+.+...+|.+++++                           ++.+.++.++...
T Consensus       173 ~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~---------------------------~~~~~~~~l~~~~  225 (460)
T PRK11462        173 IGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPP---------------------------TTTSMREDLRDIW  225 (460)
T ss_pred             hCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCc---------------------------cCCCHHHHHHHHh
Confidence            2       35555555555555544444344444322111                           1123455555555


Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG  316 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  316 (396)
                      ++|.++..+...++.............+|.+...|.+. ..+.++....+..+++. ++++++.||+++|+....+....
T Consensus       226 ~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~-~l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        226 QNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGS-ALAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHH
Confidence            77777766666555555544444555555555444333 34556667778888888 77789999999988876554443


Q ss_pred             HHHHHHHHHhhhh---hHHHHHHHHHHhhhhhhhhhhHHHhhccC-------CccchhHhhhHHHHHHHHHHhhhhhhhh
Q 016048          317 CVHMFLYSVAWSS---WVPYAAAVFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANLVSPLAFSP  386 (396)
Q Consensus       317 ~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~  386 (396)
                      .+..+++.+.+..   ......++.+++.+...+..+++..|..+       .+..|...+..+....+|..+++.+.|.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~  383 (460)
T PRK11462        304 AVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW  383 (460)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333232221   11222334455556666667778887776       3334556677778999999999999999


Q ss_pred             hhhcc
Q 016048          387 LTGDC  391 (396)
Q Consensus       387 l~~~~  391 (396)
                      +++..
T Consensus       384 iL~~~  388 (460)
T PRK11462        384 MLAYG  388 (460)
T ss_pred             HHHHc
Confidence            99874

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.86  E-value=4.4e-19  Score=159.98  Aligned_cols=351  Identities=14%  Similarity=0.080  Sum_probs=261.8

Q ss_pred             HHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccc----ccCCchhhhH-HHHH
Q 016048           13 TIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGRKALLTV-PITL   87 (396)
Q Consensus        13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grk~~~~~-~~~~   87 (396)
                      +-+...+........+..+..|       .+++++...|.+..+.-+--++.-|+.|.++|    |+||+|.+++ +.+-
T Consensus        20 gd~~~~~~~~~~~~yLl~fYTd-------v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip   92 (467)
T COG2211          20 GDFASNFAFGIVVLYLLFFYTD-------VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIP   92 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhc-------ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHH
Confidence            3344444555555566666444       57899999999999999999999999999999    5888665555 7688


Q ss_pred             hHHHHHHHHhccC---chhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCC-cccchhHHHHHHHhhhhhhHHHHHHHH-
Q 016048           88 SIIPLAILAYSRS---RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-PGRRASVFGIFSGIVSGAFVCGTISAR-  162 (396)
Q Consensus        88 ~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~-  162 (396)
                      .++...++-.+++   .......++...+.++ +.........++.+|+++ ++||.+..+.-+...++|.++...+.. 
T Consensus        93 ~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l-~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~p  171 (467)
T COG2211          93 FAIVAVLLFITPDFSMTGKLIYALVTYMLLGL-GYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPP  171 (467)
T ss_pred             HHHHHHHHHcCCCcccCcchHHHHHHHHHHHH-HHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877774   1224556677788888 777777778888999886 688999999998888888665433322 


Q ss_pred             ---Hh-------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHh
Q 016048          163 ---FI-------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMV  232 (396)
Q Consensus       163 ---~~-------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (396)
                         .+       +|+..-.+.+++..+..+..++..+|.+.+.++                      .+++.+.++++.+
T Consensus       172 lv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~----------------------~~~~~~~~~~~~~  229 (467)
T COG2211         172 LVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQP----------------------TKTGVKLKLKDSF  229 (467)
T ss_pred             HHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc----------------------CcccccccHHHHH
Confidence               22       456666666666666666666777776543221                      1112344666666


Q ss_pred             hhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHH
Q 016048          233 HLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFG  312 (396)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  312 (396)
                      ...++||.+...++...+.........+...+|.+...|.+.......+.......+++. ++.+++.+|+|+|++...+
T Consensus       230 ~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~-~~~p~L~~~~gkk~~~~~~  308 (467)
T COG2211         230 LLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGL-ILWPRLVKKFGKKKLFLIG  308 (467)
T ss_pred             HHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhchHHHHHHH
Confidence            666688888888888877777777778888888888888888777777776666666666 7778999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhh--hHHHH-HHHHHHhhhhhhhhhhHHHhhccC-------CccchhHhhhHHHHHHHHHHhhhh
Q 016048          313 LLFGCVHMFLYSVAWSS--WVPYA-AAVFSILSVFSHPCLRTIVSKQVA-------SNEQGKAQGCISGICSFANLVSPL  382 (396)
Q Consensus       313 ~~~~~i~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~  382 (396)
                      .++.+++.+++.+.+..  +..++ .++.+++.+...+..+++++|..+       .+..|...|..+++..+|.+++..
T Consensus       309 ~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~  388 (467)
T COG2211         309 LLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF  388 (467)
T ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            99999998888877632  22233 355578888999999999999875       345688999999999999999999


Q ss_pred             hhhhhhhcccCC
Q 016048          383 AFSPLTGDCRFS  394 (396)
Q Consensus       383 ~~g~l~~~~~~~  394 (396)
                      +.|++++..+..
T Consensus       389 ~~g~~L~~~Gyv  400 (467)
T COG2211         389 IPGWILGAIGYV  400 (467)
T ss_pred             HHHHHHHHcCCC
Confidence            999999886543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.86  E-value=1.9e-18  Score=151.66  Aligned_cols=326  Identities=16%  Similarity=0.132  Sum_probs=245.1

Q ss_pred             CcchhHHHHHHHHHHHHhHHHHhhhhcccccccccC-----CchhhhH-HHHHhHHHHHHHHhc-----c-----C-chh
Q 016048           41 DECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYG-----RKALLTV-PITLSIIPLAILAYS-----R-----S-RNF  103 (396)
Q Consensus        41 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rk~~~~~-~~~~~~~~~~~~~~~-----~-----~-~~~  103 (396)
                      .|++++.+..+...+...+.+. ..+.+|+.+|+.+     ||..+++ +.++...+..+..++     .     + ...
T Consensus         8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            3678899999999999888766 5889999999999     8887777 555555555444432     2     0 111


Q ss_pred             H--HHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-h---h-H--HHHHHHH
Q 016048          104 F--YAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-S---T-S--AAFQAAT  174 (396)
Q Consensus       104 ~--~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-~---~-~--~~f~~~~  174 (396)
                      .  ....+...+.|+ +.+...+...++++|..|||+|+++.++...+.-+|.+++..+.+.+ .   . |  ..+...+
T Consensus        87 ~g~~~a~l~F~l~G~-G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a  165 (403)
T PF03209_consen   87 LGLALAALAFLLYGL-GVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA  165 (403)
T ss_pred             HHHHHHHHHHHHHHh-hHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            2  234567778898 88888899999999999999999999999999999999999888865 1   1 2  2233333


Q ss_pred             HHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHh
Q 016048          175 AGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLA  254 (396)
Q Consensus       175 ~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (396)
                      ++.....++. .+-.|++.++..                     +..++++.++++.++.+..+|+.++.+...++....
T Consensus       166 ~i~~~l~~ia-~wg~E~r~~~~~---------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a  223 (403)
T PF03209_consen  166 LIALLLNLIA-LWGQEPRRSRRA---------------------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLA  223 (403)
T ss_pred             HHHHHHHHHH-HHhcccCCcccc---------------------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            3333333333 222343322220                     122334456666666666888888888888888888


Q ss_pred             hhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhh-hhcchhHHHHHHHHHHHHHHHHHHhh---hhh
Q 016048          255 DAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAP-TVGEARLLSFGLLFGCVHMFLYSVAW---SSW  330 (396)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~i~~~~~~~~~---~~~  330 (396)
                      +..-...+=+|--+.+|++..+...+....+.+..++. ...+++.. |.++++....++....+++.++....   +.+
T Consensus       224 ~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~-~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~  302 (403)
T PF03209_consen  224 FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGM-LLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPW  302 (403)
T ss_pred             HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            88888888899999999999999999999999999988 44455544 77888888888888888877765543   334


Q ss_pred             HHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          331 VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       331 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ..-. .+++|++.+.......+...+..++++.|...|.....+.++..++..++|.+.|..
T Consensus       303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  303 LFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333 677899999999999999999999999999999999999999999999999998853

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.83  E-value=3.7e-19  Score=160.77  Aligned_cols=364  Identities=19%  Similarity=0.177  Sum_probs=243.3

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCC-chhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGR-KALL   81 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-k~~~   81 (396)
                      ++|.++...+..++.....+++.|..-.|.++.      |.+.+....|++.++..++.+++++..|++..|.++ |+.+
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl  105 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL  105 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhc------CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence            345677778889999999999999998887662      234455688999999999999999999999999997 9999


Q ss_pred             hHHHHHhHHHHHHH-HhccCch-hHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHH
Q 016048           82 TVPITLSIIPLAIL-AYSRSRN-FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  159 (396)
                      +.+.++..++.++. +...-.+ ..+.++++|++.|+ |.+. .....+|+++....++|.++++....+..+|..+||.
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gv-g~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~  183 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGV-GVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT  183 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-Cccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence            99999999999988 4432222 37889999999999 7555 4678999999999999999999999999999999998


Q ss_pred             HHHHh------h-----------hHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhh
Q 016048          160 SARFI------S-----------TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVF  222 (396)
Q Consensus       160 ~~~~~------~-----------~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  222 (396)
                      +...+      |           +..+-|+.+++.++..++..++++|.++..++++..+.           ++++.+.+
T Consensus       184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~-----------~~~~~~~~  252 (488)
T KOG2325|consen  184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV-----------EEEKSDIE  252 (488)
T ss_pred             HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc-----------hhhccchh
Confidence            88665      1           13466788888888888888889998765542111000           00000101


Q ss_pred             ccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccch----hhHHHHHHHHHHHHHHHHHHh
Q 016048          223 KRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQF----ADLMVIAGIAGTISQLIMMPV  298 (396)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~  298 (396)
                      +.+.+..|       .+......+..+...+.+....+..+......++++.+++    +...+..++..+...+.. ..
T Consensus       253 ~~~~~~~d-------~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~-~f  324 (488)
T KOG2325|consen  253 KVKKPKLD-------WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLY-IF  324 (488)
T ss_pred             hhccCChh-------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHH-HH
Confidence            11111111       1223334444455555555556666777777778877664    344444444444444222 11


Q ss_pred             hh-hhhcchhHHHHHHHHHHHHHHHH--HHh--hh---------------------------hhHHHH--HHHHHHhhhh
Q 016048          299 LA-PTVGEARLLSFGLLFGCVHMFLY--SVA--WS---------------------------SWVPYA--AAVFSILSVF  344 (396)
Q Consensus       299 l~-~~~g~~~~~~~~~~~~~i~~~~~--~~~--~~---------------------------~~~~~~--~~~~~~~~~~  344 (396)
                      .. .++.+|+.+..++........+.  .+.  ..                           .+....  .+++|.+.-.
T Consensus       325 ~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~  404 (488)
T KOG2325|consen  325 TRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPF  404 (488)
T ss_pred             HHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheecccccc
Confidence            11 23334444444433333332222  111  00                           000111  1223444444


Q ss_pred             hhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          345 SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       345 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      ......++.+|...|+++++++|+.+.....+..++|.+...++...+.
T Consensus       405 ~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~  453 (488)
T KOG2325|consen  405 ISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGP  453 (488)
T ss_pred             ccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCc
Confidence            5567888999999999999999999999999999999999888876643

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.79  E-value=8.6e-21  Score=178.18  Aligned_cols=372  Identities=16%  Similarity=0.234  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHh
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS   88 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~   88 (396)
                      .+++..++.....+.....++.+        ++.+++++++.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.
T Consensus         7 ~~~~~~~~q~~~~g~~~~~ltti--------ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~   78 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTI--------ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLM   78 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHH
Confidence            34444555555555555555555        7789999999999999999999999999999999988888888899999


Q ss_pred             HHHHHHHHhc----cC-------------------------------------------chhHHHHHHHHHHHhhhccch
Q 016048           89 IIPLAILAYS----RS-------------------------------------------RNFFYAYYVLRTLTAMVCEGS  121 (396)
Q Consensus        89 ~~~~~~~~~~----~~-------------------------------------------~~~~~~l~~~r~l~G~~~~~~  121 (396)
                      +++.+++++=    ..                                           ...++.++++.++.|+ |...
T Consensus        79 ~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi-G~~p  157 (539)
T PF03137_consen   79 GLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI-GATP  157 (539)
T ss_dssp             -------------------------------------------------------------------------SS-S---
T ss_pred             HHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc-cccC
Confidence            9998877631    00                                           0025778899999999 9999


Q ss_pred             hhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh--------------------------hhHHHHHHHHH
Q 016048          122 IHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--------------------------STSAAFQAATA  175 (396)
Q Consensus       122 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--------------------------~~~~~f~~~~~  175 (396)
                      .++...+|+-|..++++-+..+|++.....+|.++|-++++..                          .||..|.+.+.
T Consensus       158 l~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~  237 (539)
T PF03137_consen  158 LYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGI  237 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988887642                          15667777777


Q ss_pred             HHHHHHHHHHHhcCCCCCCccc-ccccccchhhhhhhhhhh-hhhhhh---hccCCChhHHhhhhcCChhHHHHHHHHHH
Q 016048          176 GSIISAVYMRIFLPESVRDEDL-YTPILSSKAEISASCEES-TKKLQV---FKRLPSIDDMVHLLKSSPTFSQAAIVAFL  250 (396)
Q Consensus       176 ~~~~~~~~~~~~~~e~~~~~~~-~~~l~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (396)
                      +.++..+.. +..|+..++.++ ++..+..+.+.++.+++. .+.++.   .+..+++.+..+.+.+||.+....+...+
T Consensus       238 ~~~l~aipl-~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~  316 (539)
T PF03137_consen  238 LLFLSAIPL-FFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVF  316 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHH-HcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHH
Confidence            777766655 444544332211 110000000100000000 000000   11111222222334478888888888888


Q ss_pred             HHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhc--chhHHHHHHHHHHHHHHHH---HH
Q 016048          251 SNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVG--EARLLSFGLLFGCVHMFLY---SV  325 (396)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~i~~~~~---~~  325 (396)
                      ......++.+++|-|++.+|+.++++++.+.....+.......+++|++.+|++  .|+.+....+...++.+.+   .+
T Consensus       317 ~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~  396 (539)
T PF03137_consen  317 ESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFF  396 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            888899999999999999999999998888877777555555588899999874  4555444444444443321   11


Q ss_pred             h--h---------hh---------------------------------------hHHH-H-HHHHHHhhhhhhhhhhHHH
Q 016048          326 A--W---------SS---------------------------------------WVPY-A-AAVFSILSVFSHPCLRTIV  353 (396)
Q Consensus       326 ~--~---------~~---------------------------------------~~~~-~-~~~~~~~~~~~~~~~~~~~  353 (396)
                      .  +         ..                                       .... + .++..+..+..........
T Consensus       397 ~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~  476 (539)
T PF03137_consen  397 LGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLIT  476 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheee
Confidence            0  0         00                                       0001 1 1111223344445566667


Q ss_pred             hhccCCccchhHhhhHHHHHH-HHHHhhhhhhhhhhhc
Q 016048          354 SKQVASNEQGKAQGCISGICS-FANLVSPLAFSPLTGD  390 (396)
Q Consensus       354 ~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~  390 (396)
                      -+.+|+++|+.|.|+...+.+ +|.+-+|+++|.++|.
T Consensus       477 LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  477 LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             --------------------------------------
T ss_pred             eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            789999999999999987766 8899999999999996

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.76  E-value=5.5e-16  Score=138.89  Aligned_cols=370  Identities=14%  Similarity=0.082  Sum_probs=243.2

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-CCchhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALL   81 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~~   81 (396)
                      +.|.++.++..-+...++++-....+..|+..+..++   ++.+.++..-+.+.|..-.-+...++|+++||+ |+|+.+
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g---Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG---LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc---CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            4567888999999999999877778888888766433   777777777777777776677788999999997 999999


Q ss_pred             hHHHHHhHHHHHHHHhcc--CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcc--cchhHHHHHHHhhhhhhHHH
Q 016048           82 TVPITLSIIPLAILAYSR--SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG--RRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g  157 (396)
                      ..+.++..+|.++.+.+.  +   ...++++-.+.++ |.|..-+...+++.|.+|++  +|...++++..+.++|..++
T Consensus        96 ~lGail~~iGh~~L~~~~~~~---~~gl~i~L~~I~i-G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~  171 (498)
T COG3104          96 VLGAILMAIGHLVLAISSVSG---PGGLYIGLALIIV-GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIA  171 (498)
T ss_pred             HHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHh-ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHH
Confidence            999999999999999884  5   6778888899999 99999999999999999865  46777888899999999999


Q ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCC----CCCCcccccc-cccchh-----------hh-hh---hhh
Q 016048          158 TISARFI----STSAAFQAATAGSIISAVYMRIFLPE----SVRDEDLYTP-ILSSKA-----------EI-SA---SCE  213 (396)
Q Consensus       158 ~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e----~~~~~~~~~~-l~~~~~-----------~~-~~---~~~  213 (396)
                      |++.+++    +|+..|...++-..+..+.. ...+.    ++..++.... .++...           .. ..   .+.
T Consensus       172 p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  250 (498)
T COG3104         172 PIITGLLAINYGWHVGFGLAAVGMIIGLVIF-LLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNT  250 (498)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH-HHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9888876    78888888777666554433 22222    1111111000 000000           00 00   000


Q ss_pred             hhh---------hh---hhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccc----ccch
Q 016048          214 EST---------KK---LQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFN----KNQF  277 (396)
Q Consensus       214 ~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~  277 (396)
                      ...         +.   .+..+.++...| .   +|-.....+++.....+..+....+.+..|..+..+.+    .-..
T Consensus       251 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~e-r---~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~  326 (498)
T COG3104         251 FSGVLLVISILIAIIYFAEAFRSPKVFDE-R---RRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPP  326 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccHHH-H---HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCH
Confidence            000         00   000000110111 0   01112223333333444444444555666665533222    1234


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhcch-------hHHHHHHHHHHHHHHHHHHh-------h---h-hhHHHHHHHHH
Q 016048          278 ADLMVIAGIAGTISQLIMMPVLAPTVGEA-------RLLSFGLLFGCVHMFLYSVA-------W---S-SWVPYAAAVFS  339 (396)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-------~~~~~~~~~~~i~~~~~~~~-------~---~-~~~~~~~~~~~  339 (396)
                      .+..+.+.+..++..++++ ++..|.+++       .-...+..+++.+++++...       .   + .|.....++..
T Consensus       327 ~~fQslNp~~Iii~~pI~a-~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         327 AWFQSLNPFFIILFSPILA-ALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHH-HHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            6778888888888885554 555553322       12456666677776666554       1   1 22333356678


Q ss_pred             HhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhh
Q 016048          340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFS  385 (396)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g  385 (396)
                      ++.-+..|...+++.+..|+...+.++|..-.....++.++..+.+
T Consensus       406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            8999999999999999999999999999888888888777766665

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=4.7e-17  Score=153.11  Aligned_cols=345  Identities=16%  Similarity=0.192  Sum_probs=251.0

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhcc------------------Cc
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR------------------SR  101 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~------------------~~  101 (396)
                      ++.++++.++.|++.+.+-++..+...+..+..-|..|-|.+-++.++.+++.+++++=+                  +.
T Consensus       124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~  203 (735)
T KOG3626|consen  124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP  203 (735)
T ss_pred             hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence            567788888999999999999999999999999999999999999999999999887520                  00


Q ss_pred             -------------------------------hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhh
Q 016048          102 -------------------------------NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIV  150 (396)
Q Consensus       102 -------------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  150 (396)
                                                     ..+..++++.++.|+ |....++...+|+-|...+++-...+|++....
T Consensus       204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI-G~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~  282 (735)
T KOG3626|consen  204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI-GATPIFTLGISYIDDNVKKKNSPLYLGILYSMA  282 (735)
T ss_pred             ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc-CCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence                                           013467889999999 999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhh
Q 016048          151 SGAFVCGTISARFI-----------------------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAE  207 (396)
Q Consensus       151 ~~g~~~g~~~~~~~-----------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~  207 (396)
                      .+|.++|-+++++.                       .||..|++.+.+.++..+.. +++|...++.++++..++.+..
T Consensus       283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~~~~~~~~~~~~~~  361 (735)
T KOG3626|consen  283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPKSQKRKRARDLHVL  361 (735)
T ss_pred             HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCccccccchhhhhccc
Confidence            99999999888864                       26778888888888877766 5566554433321111100000


Q ss_pred             hhhhhhhhhhhhhhhccCCChhH---HhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHH
Q 016048          208 ISASCEESTKKLQVFKRLPSIDD---MVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIA  284 (396)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  284 (396)
                      ..++    ...++..+..+..+|   ..+.+.++|.+....+...+....+.++.+++|-|++++||.+++.+..+....
T Consensus       362 k~~~----~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i  437 (735)
T KOG3626|consen  362 KTES----GGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSI  437 (735)
T ss_pred             cccc----ccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhh
Confidence            0000    000011111112222   223344789999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHhhhhhhc--chhHHHHHHHHHHHHHHHHH---Hh---------------------h-h---------
Q 016048          285 GIAGTISQLIMMPVLAPTVG--EARLLSFGLLFGCVHMFLYS---VA---------------------W-S---------  328 (396)
Q Consensus       285 ~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~---~~---------------------~-~---------  328 (396)
                      ++.......+++|++.+|+.  .|.......+...+.++.+.   +.                     . .         
T Consensus       438 ~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~  517 (735)
T KOG3626|consen  438 GVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSD  517 (735)
T ss_pred             hhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcC
Confidence            88877777789999999874  45555555544444444311   10                     0 0         


Q ss_pred             ---------------------------------------------hh-----------------------HHHHHHHHH-
Q 016048          329 ---------------------------------------------SW-----------------------VPYAAAVFS-  339 (396)
Q Consensus       329 ---------------------------------------------~~-----------------------~~~~~~~~~-  339 (396)
                                                                   ..                       ..++.++++ 
T Consensus       518 C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~s  597 (735)
T KOG3626|consen  518 CSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGS  597 (735)
T ss_pred             CCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHH
Confidence                                                         00                       011122222 


Q ss_pred             HhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHH-HHHHhhhhhhhhhhhc
Q 016048          340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FANLVSPLAFSPLTGD  390 (396)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~  390 (396)
                      +..+...+..+.++-+.+|+|+|.-+.|+..++.+ +|.+-+|.++|+++|.
T Consensus       598 f~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~  649 (735)
T KOG3626|consen  598 FIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT  649 (735)
T ss_pred             HHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence            22334456677778889999999999999988766 8999999999999996

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.70  E-value=6.9e-15  Score=129.72  Aligned_cols=324  Identities=12%  Similarity=0.010  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCc---hhHH--HHHHHHHHHhhhccc
Q 016048           46 AIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSR---NFFY--AYYVLRTLTAMVCEG  120 (396)
Q Consensus        46 s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~l~~~r~l~G~~~~~  120 (396)
                      +....-|..-+|.+.+....+++-|+.||+|-|...+++..+..++..+-..+..+   +.++  ....+..+.+. +.-
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~-Aq~  155 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA-AQP  155 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH-hhh
Confidence            44456788899999999999999999999999999999999999999988877554   3345  66778888887 666


Q ss_pred             hhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----------hhHH--HHHHHHHHHHHHHHHHHHhc
Q 016048          121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----------STSA--AFQAATAGSIISAVYMRIFL  188 (396)
Q Consensus       121 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----------~~~~--~f~~~~~~~~~~~~~~~~~~  188 (396)
                      ........+-.-|+|+++|..+..+-..+..+|..+|.++...+          .|..  .|+...++..+..++..+..
T Consensus       156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~  235 (480)
T KOG2563|consen  156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVF  235 (480)
T ss_pred             HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            65555567778899999999999888888778877776665543          3433  35544444444444454555


Q ss_pred             CCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhh
Q 016048          189 PESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKA  268 (396)
Q Consensus       189 ~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (396)
                      +|.|+.....                   . .......+..+..+...+++++..+.+++......+++..+.+..-+..
T Consensus       236 ~~~P~tPps~-------------------s-~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~  295 (480)
T KOG2563|consen  236 TKKPPTPPSA-------------------S-QAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP  295 (480)
T ss_pred             CCCCCCCCch-------------------h-HhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc
Confidence            5544432210                   0 0000012233333333368888888888887777777777666644444


Q ss_pred             hccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcch-hHHHHHHHHHHHHHHHHHHhh----h-hhHHHHHHHHHHhh
Q 016048          269 KFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA-RLLSFGLLFGCVHMFLYSVAW----S-SWVPYAAAVFSILS  342 (396)
Q Consensus       269 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~i~~~~~~~~~----~-~~~~~~~~~~~~~~  342 (396)
                      . |.+...+|.......+.++++. .+.|.+.||.+.- ...........++...+....    . ........+++.+.
T Consensus       296 s-gY~~~~aG~ig~l~iv~Gmlga-~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~  373 (480)
T KOG2563|consen  296 S-GYEGVFAGYIGALMIVAGMLGA-LASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG  373 (480)
T ss_pred             c-cCCccccchhHHHHHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence            3 7777888999999999999999 7788999998753 344444444444422222111    1 22223356678888


Q ss_pred             hhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          343 VFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       343 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ....|....+..|..-|..-++..|+.+..+++-+++-..+.+...+...
T Consensus       374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  374 TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence            88899999999998877888999999999999999888888887776543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.63  E-value=1.3e-13  Score=119.55  Aligned_cols=270  Identities=13%  Similarity=0.095  Sum_probs=175.9

Q ss_pred             HHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHH
Q 016048           11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII   90 (396)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~   90 (396)
                      .....+...+..+..|.+-...+        +.+.+..+++.+........++..++.|.++||+|||+.-+..+++.++
T Consensus        40 l~vY~La~~aDWLQGpY~Y~LY~--------~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~  111 (354)
T PF05631_consen   40 LLVYLLAMAADWLQGPYLYALYE--------SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL  111 (354)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            44555667777788887665532        4567778899999999999999999999999999999999999999988


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHH-hcC----CCcccchhHHHHHH-HhhhhhhHHHHHHHHHh
Q 016048           91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYV-ADN----VPPGRRASVFGIFS-GIVSGAFVCGTISARFI  164 (396)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~~  164 (396)
                      +++ +-.+++   ++.++++|++.|+ +.+....+-.++. .|+    +|++..+..++... ...++-.+.+..++..+
T Consensus       112 scl-~k~~~~---~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  112 SCL-TKHSSN---YPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHH-HHhccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            886 445567   9999999999999 8888888888875 444    23333333333322 22222233344444433


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCC
Q 016048          165 ------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSS  238 (396)
Q Consensus       165 ------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (396)
                            +...+|....++.++..+++...-+|...+.++                       ..+.....++..+.++++
T Consensus       187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~-----------------------~~~~~~~~~~a~~~i~~d  243 (354)
T PF05631_consen  187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSS-----------------------SSSLSGSFREAWRAILSD  243 (354)
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCccc-----------------------ccchHHHHHHHHHHHHcC
Confidence                  236789888888887777665556665433220                       011112344555566678


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhh-hhhcchhHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLA-PTVGEARLLSFGLLFGC  317 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~~~  317 (396)
                      |+++.+.++..+.-...+.+....++-++.. + .....|.+++...+..++|+. +.+++. ++......+.....+.+
T Consensus       244 ~ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~-lf~~l~s~~~~~e~~l~~v~~~aa  320 (354)
T PF05631_consen  244 PRILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSS-LFSRLLSKSLRPESLLRYVFAVAA  320 (354)
T ss_pred             chhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence            8888888877777766665544444444421 1 223469999999999999994 444444 44333344444344333


Q ss_pred             HH
Q 016048          318 VH  319 (396)
Q Consensus       318 i~  319 (396)
                      ++
T Consensus       321 ~~  322 (354)
T PF05631_consen  321 VS  322 (354)
T ss_pred             HH
Confidence            33

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.62  E-value=1.8e-15  Score=117.88  Aligned_cols=132  Identities=25%  Similarity=0.373  Sum_probs=116.8

Q ss_pred             HHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCC
Q 016048           55 AIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV  134 (396)
Q Consensus        55 s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~  134 (396)
                      +.+.++..+++++.|++.||+|||+.+..+.....++.+.....++   ++.+.+.+++.|+ +.+...+....++.|..
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGF-GAAFALVAGAALIADIY   80 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHC
Confidence            3456788899999999999999999999999999999988888888   8899999999999 88888899999999999


Q ss_pred             CcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 016048          135 PPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       135 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e  190 (396)
                      |+++|++.++..+....+|..++|.+.+.+    +|++.+++.+...++..+...+..||
T Consensus        81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999888876    68899988888877777666666665

>TIGR00889 2A0110 nucleoside transporter

Probab=99.60  E-value=2.4e-14  Score=132.61  Aligned_cols=188  Identities=12%  Similarity=0.079  Sum_probs=142.7

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      ++.+.+..++............|.+..+........-+.+..+.+...++..++..++.++.|+++||+|||+++..+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~  289 (418)
T TIGR00889       210 MAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLV  289 (418)
T ss_pred             eeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            33445555555444444555556665542100000012445678999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHhcc-CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHH-HhhhhhhHHHHHHHHHh
Q 016048           87 LSIIPLAILAYSR-SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFS-GIVSGAFVCGTISARFI  164 (396)
Q Consensus        87 ~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~~  164 (396)
                      +.+++..+..... +...++.+++.+++.|+ +.+...+....++.|++|+++|++++++.+ ...++|..+||.+++.+
T Consensus       290 ~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~-~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l  368 (418)
T TIGR00889       290 AWALRFGFFAYGDPEYFGYALLFLSMIVYGC-AFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM  368 (418)
T ss_pred             HHHHHHHHHHHcCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9988877776643 21124667788999999 888888888999999999999999999997 67889999999999864


Q ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 016048          165 ----------STSAAFQAATAGSIISAVYMRIFLPESVRDE  195 (396)
Q Consensus       165 ----------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~  195 (396)
                                +|+..|.+.+++.++..++.++++||+.+.-
T Consensus       369 ~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       369 VEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence                      3788999998888888888888899875543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.55  E-value=1.1e-13  Score=128.27  Aligned_cols=171  Identities=19%  Similarity=0.279  Sum_probs=136.2

Q ss_pred             HHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHH
Q 016048           12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIP   91 (396)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~   91 (396)
                      ...+......+...+.+|.+..+...    +.+......+.+.++..++..++.+..|+++||+|||+.+..+..+..++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~  301 (408)
T PRK09874        226 VTTLIIQVATGSIAPILTLYVRELAG----NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence            33344445555666777877666321    11222334677778888899999999999999999999999998888888


Q ss_pred             HHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhH
Q 016048           92 LAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STS  167 (396)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~  167 (396)
                      .+...+.++   .+.+++.+++.|+ +.+...+...+.+.|..|+++|++.++..+....+|..+||.+++.+    +|+
T Consensus       302 ~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~  377 (408)
T PRK09874        302 LIPMSFVQT---PLQLGILRFLLGA-ADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFR  377 (408)
T ss_pred             HHHHHHhcc---HHHHHHHHHHHHh-hhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchh
Confidence            877777777   7888889999999 88888899999999999999999999999999999999999998875    789


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC
Q 016048          168 AAFQAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       168 ~~f~~~~~~~~~~~~~~~~~~~e  190 (396)
                      ..|++.+++.++..+..++..++
T Consensus       378 ~~f~~~~~~~l~~~~~~~~~~~~  400 (408)
T PRK09874        378 AVFLVTAGVVLFNAVYSWNSLRR  400 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888877766555444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.55  E-value=1e-13  Score=131.31  Aligned_cols=166  Identities=13%  Similarity=0.074  Sum_probs=116.0

Q ss_pred             HHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHH--
Q 016048           17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAI--   94 (396)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~--   94 (396)
                      ...........+|.+..+.       .+.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..+....  
T Consensus       262 ~~~~~~~~~~~~p~~l~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  334 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHN-------LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAF  334 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            3344445556677776542       3444456677778888999999999999999999999988877654433322  


Q ss_pred             -HHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-----hhHH
Q 016048           95 -LAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSA  168 (396)
Q Consensus        95 -~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-----~~~~  168 (396)
                       ...+++   ...+++++++.|+ +.+........++.|.+|++.|++.++.......++..++|.+.+++     +|+.
T Consensus       335 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~  410 (490)
T PRK10642        335 ILINSNV---IGLIFAGLLMLAV-ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMM  410 (490)
T ss_pred             HHHhCCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence             223344   6777888999887 66666677788899999999999999975444455556677776654     3676


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCC
Q 016048          169 AFQAATAGSIISAVYMRIFLPESVRD  194 (396)
Q Consensus       169 ~f~~~~~~~~~~~~~~~~~~~e~~~~  194 (396)
                      +++...+.+++..+.. +++||+|++
T Consensus       411 ~~~~~~~~~~i~~~~~-~~~pes~~~  435 (490)
T PRK10642        411 PAYYLMVVAVIGLITG-VTMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHHHHHH-HHhccccCC
Confidence            7666666555555544 567999875

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.54  E-value=5.3e-14  Score=130.88  Aligned_cols=158  Identities=11%  Similarity=0.048  Sum_probs=127.7

Q ss_pred             chhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHH
Q 016048           27 AITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYA  106 (396)
Q Consensus        27 ~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (396)
                      ..|.+..+..    .+.+.+..+.|++.++..++..++.++.|+++||+|||+.+..+.++.+++..+.+++++   .+.
T Consensus       245 ~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~---~~~  317 (420)
T PRK09528        245 QFPNFFASFF----ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG---PLE  317 (420)
T ss_pred             HHHHHHHHHH----hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc---HHH
Confidence            3566655432    112344567899999999999999999999999999999999999999999888888888   888


Q ss_pred             HHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHH-HHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHH
Q 016048          107 YYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGI-FSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISA  181 (396)
Q Consensus       107 l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~  181 (396)
                      +++.+++.|+ +.+...+....++.|..|++.|+...+. ++....+|..++|.+.+.+    ||+..|...+++.++..
T Consensus       318 ~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~  396 (420)
T PRK09528        318 VSILKLLHAF-EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFT  396 (420)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence            8899999998 7777777788999999999998877655 5667788999998888875    88999999888887766


Q ss_pred             HHHHHhcCCCC
Q 016048          182 VYMRIFLPESV  192 (396)
Q Consensus       182 ~~~~~~~~e~~  192 (396)
                      ++.+..+++++
T Consensus       397 ~~~~~~~~~~~  407 (420)
T PRK09528        397 LISVFTLSGDR  407 (420)
T ss_pred             HHHHHHhcCCc
Confidence            66656666543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.53  E-value=1.1e-13  Score=134.48  Aligned_cols=140  Identities=21%  Similarity=0.201  Sum_probs=119.1

Q ss_pred             HHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHH
Q 016048           49 LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLA  128 (396)
Q Consensus        49 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  128 (396)
                      ...+...+..++.+++.++.|+++||+|||++++.+.++.+++.++.++.++   ...+++.+++.|+ ..+..++...+
T Consensus       596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s---~~~ll~~~~l~g~-~~~~~~~~~~a  671 (742)
T TIGR01299       596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS---ESAMIALLCLFGG-LSIAAWNALDV  671 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3456677778999999999999999999999999999999999999999888   7778888888888 77778889999


Q ss_pred             HHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 016048          129 YVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI---STSAAFQAATAGSIISAVYMRIFLPESVR  193 (396)
Q Consensus       129 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  193 (396)
                      +++|++|.++|++++|+......+|.++||.+++.+   +...+|++.+++.++.+++. .++||+..
T Consensus       672 ~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~-~~LPET~~  738 (742)
T TIGR01299       672 LTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLA-LKLPDTRG  738 (742)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhCCCCcc
Confidence            999999999999999999999999999999998865   33567777777766655544 56788654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10054 putative transporter; Provisional

Probab=99.50  E-value=8.4e-13  Score=121.59  Aligned_cols=152  Identities=13%  Similarity=0.078  Sum_probs=129.5

Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG  316 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  316 (396)
                      .+|.++.+.+..++..........++|.|+++++|+++.+.++..+...+...+.+ +..|+++||+|||+.+..+....
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFS-LGFGILADKFDKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCcchhHHHHHHHH
Confidence            34567777778888888888888899999999899999999999999999999999 77789999999999999999888


Q ss_pred             HHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          317 CVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       317 ~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      .++.+++.+.++.+.... ..+.+.+.+...+...++..|..|+++|+++.|+.+...++|..++|.+.+.+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         84 ASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887776655444 2334555566678889999999999999999999999999999999999998875

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.50  E-value=1.5e-12  Score=120.61  Aligned_cols=340  Identities=14%  Similarity=0.146  Sum_probs=208.2

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-----CCchhhhHHHHHhHHHHHHHHhccC-chhHHHHHHHHHH
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-----GRKALLTVPITLSIIPLAILAYSRS-RNFFYAYYVLRTL  113 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l  113 (396)
                      ++++++++.+.....+...+...+ -+++|.++|.+     .||+-++++.++..++....+..+. ..+.....+.-++
T Consensus        17 ~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l   95 (433)
T PF03092_consen   17 KDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL   95 (433)
T ss_pred             HHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence            446778888888888877777665 57899999976     3555666677777666665655433 1225556666777


Q ss_pred             HhhhccchhhHHHHHHHhcCCC--cccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHh
Q 016048          114 TAMVCEGSIHCLSLAYVADNVP--PGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIF  187 (396)
Q Consensus       114 ~G~~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~  187 (396)
                      ..+ +......+..+.+.|...  +++|+...+.......+|.+++..+++.+    +++..|.+.+.+..+..+...+.
T Consensus        96 a~~-g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~  174 (433)
T PF03092_consen   96 ASF-GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFL  174 (433)
T ss_pred             HHH-HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHh
Confidence            777 778888899999999874  33467778888888889999988888776    66888888888877776666566


Q ss_pred             cCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHH-HHHHHHHhhhhhhhhHHHHh
Q 016048          188 LPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAI-VAFLSNLADAGLQGSMMYYL  266 (396)
Q Consensus       188 ~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  266 (396)
                      .+|.+++++ .+.....       ++  +........++..++.++.+ +++.++...+ ..++.............++.
T Consensus       175 ~~e~~~~~~-~~~~~~~-------~~--~~~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~  243 (433)
T PF03092_consen  175 LEERKVRPA-DEVFSFG-------KE--EVPCLFGSFREQLSELWRAL-QQRAIWQPILFFIFFFNLPPSISSASSFYFQ  243 (433)
T ss_pred             hhhcccccc-chhhccc-------cc--ccchhhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhccCCCCccEEEEE
Confidence            666222111 1000000       00  00000000111233333334 3455554444 22222222111111011222


Q ss_pred             hhhcc---ccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHH----------hhhhhHHH
Q 016048          267 KAKFH---FNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSV----------AWSSWVPY  333 (396)
Q Consensus       267 ~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~  333 (396)
                      .+..+   +++...+.+..+..++.+++. .+..+...+..-|+++....++.++..+.-..          .++.+...
T Consensus       244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~-~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~l  322 (433)
T PF03092_consen  244 TDALGGPHFSPSFYGTLSIVGSIASLLGI-LLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFAL  322 (433)
T ss_pred             eccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEE
Confidence            33345   888888888877777777777 44344444556667766666555443332110          01112112


Q ss_pred             H-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          334 A-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       334 ~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      . ..+........+-....+++|++|+...|+.+++...+.++|..++..++..+.+.++-
T Consensus       323 gd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~v  383 (433)
T PF03092_consen  323 GDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGV  383 (433)
T ss_pred             EhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            2 34445555666667778899999999999999999999999999999999998887653

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.49  E-value=1.1e-10  Score=104.27  Aligned_cols=320  Identities=13%  Similarity=0.089  Sum_probs=204.6

Q ss_pred             HHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhc
Q 016048           53 QQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVAD  132 (396)
Q Consensus        53 ~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~  132 (396)
                      +.-+..-.++...++...+.|..+.|++++++.+...+...+..+.++   ...+-+..++.|+ +.+. ..+..+++-.
T Consensus        46 i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~-~~a~-evay~sYiys  120 (412)
T PF01770_consen   46 IYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---VLAMQLMQFFYGL-ATAA-EVAYYSYIYS  120 (412)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHH-HHHH-HHHHHHHhee
Confidence            333445566777788999999999999999999999999999999999   9999999999998 6444 5778899999


Q ss_pred             CCCcccchhHHHHHHHhhhhhhHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc---ccc---cc
Q 016048          133 NVPPGRRASVFGIFSGIVSGAFVCGTISARFI------STSAAFQAATAGSIISAVYMRIFLPESVRDE---DLY---TP  200 (396)
Q Consensus       133 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~---~~~---~~  200 (396)
                      ..|+++-.++.+...+..-+|..++.++|..+      +.+...++......+..+ ..+++|..++..   ++.   +.
T Consensus       121 ~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~-~~~fLP~~~~S~~f~r~~~~~~~  199 (412)
T PF01770_consen  121 VVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALL-IALFLPMPKRSLFFHRKPPAEQD  199 (412)
T ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHcCCCCcccceeccCccccc
Confidence            99999999999999999999988888888765      345555555554444444 336788765421   100   00


Q ss_pred             cccchhhhhhhhhhh--hhhhhhhccCC--------ChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhh-
Q 016048          201 ILSSKAEISASCEES--TKKLQVFKRLP--------SIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK-  269 (396)
Q Consensus       201 l~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  269 (396)
                      .++.+.+..++.++.  +.++++...+.        -+++..+.. ++|.+....+=..+...++....++......+. 
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y-~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~  278 (412)
T PF01770_consen  200 ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCY-SNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVP  278 (412)
T ss_pred             cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence            000001100000000  00001111111        122222223 455555544444444555555555555555443 


Q ss_pred             -ccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchh--HHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHhhhhh
Q 016048          270 -FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEAR--LLSFGLLFGCVHMFLYSVAWSSWVPYAA-AVFSILSVFS  345 (396)
Q Consensus       270 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~  345 (396)
                       -+-+..-.|.+-+...+.+.++. +..|++..+..+..  .+....++.+..++++....+.|..... +++...+...
T Consensus       279 ~~~~~~vYNG~VeA~~tllgA~~a-l~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fl  357 (412)
T PF01770_consen  279 PSDNESVYNGAVEAASTLLGAIAA-LLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFL  357 (412)
T ss_pred             CCCCCcccchHHHHHHHHHHHHHH-HHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence             12333345777777777788777 66677755554433  3344445566667777777788877774 4456667777


Q ss_pred             hhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhh
Q 016048          346 HPCLRTIVSKQVASNEQGKAQGCISGICSFANLVS  380 (396)
Q Consensus       346 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~  380 (396)
                      .+.....++.....|.-|-.+|+.+++..+-..+-
T Consensus       358 iTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtil  392 (412)
T PF01770_consen  358 ITIASFQIAKNLSEERYALVFGINTFVALVLQTIL  392 (412)
T ss_pred             HHHHHHHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence            78888888888888889999998887776555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.49  E-value=6.3e-13  Score=122.49  Aligned_cols=163  Identities=16%  Similarity=0.187  Sum_probs=122.2

Q ss_pred             HHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHH
Q 016048           15 FVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAI   94 (396)
Q Consensus        15 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~   94 (396)
                      +............+|.+.++       +++.+..+.|+..+...++.+++.++.|+++||+|||+.+..+.....+....
T Consensus       226 ~~~~~~~~~~~~~~p~~l~~-------~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~  298 (393)
T PRK15011        226 TLMWGTNSLYIINMPLFIIN-------ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG  298 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            33333344444566777554       34566677888888878888889999999999999999888777666665555


Q ss_pred             HHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHH
Q 016048           95 LAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAF  170 (396)
Q Consensus        95 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f  170 (396)
                      ....++   .+.+++.+++.++ +.+...+....+..|..| ++|++++++++...++|..+||.+++.+    +|+..|
T Consensus       299 ~~~~~~---~~~~l~~~~l~~~-~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~  373 (393)
T PRK15011        299 MLMAHS---PAILLGLQLLNAI-YIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVF  373 (393)
T ss_pred             HHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            555666   6777788888887 667666777788899988 4699999999888899999999888875    788888


Q ss_pred             HHHHHHHHHHHHHHHHhcCC
Q 016048          171 QAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~e  190 (396)
                      ++..++.++..+.. ++.||
T Consensus       374 ~~~~~~~~~~~~~~-~~~~~  392 (393)
T PRK15011        374 WFALVMIIATLFCL-LRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHH-HhhcC
Confidence            88777776655544 45565

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.46  E-value=1e-12  Score=121.48  Aligned_cols=160  Identities=17%  Similarity=0.176  Sum_probs=125.5

Q ss_pred             HHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHH
Q 016048           17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA   96 (396)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~   96 (396)
                      ..++.....+.+|.+..+.        +.  ...++..+.+.++..++.++.|++.||+|||+.+..+..+.+++..+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T PRK05122        228 ASIGFGTIATFITLYYAAR--------GW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW  297 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHc--------cc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            3444444555666665442        11  1335566778888899999999999999999999999888888888888


Q ss_pred             hccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHH
Q 016048           97 YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQA  172 (396)
Q Consensus        97 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~  172 (396)
                      +.++   .+.+++.+++.|+ +.+...+.....+.|..|+++|+++.++++....+|..++|.+.+.+    +|+..|++
T Consensus       298 ~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  373 (399)
T PRK05122        298 LAPS---PWMALIGAALTGF-GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLA  373 (399)
T ss_pred             Hhcc---HHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            8877   7778888999999 88888888888888999999999999999999999988888777765    78999998


Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 016048          173 ATAGSIISAVYMRIFLPES  191 (396)
Q Consensus       173 ~~~~~~~~~~~~~~~~~e~  191 (396)
                      .+++.++..+..++ ++++
T Consensus       374 ~~~~~~~~~~~~~~-~~~~  391 (399)
T PRK05122        374 AALAALLGLALTWL-LYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHH-hccc
Confidence            88877776665544 4443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.45  E-value=6.6e-13  Score=126.43  Aligned_cols=145  Identities=12%  Similarity=0.070  Sum_probs=108.1

Q ss_pred             cccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchh
Q 016048           24 VAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNF  103 (396)
Q Consensus        24 ~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~  103 (396)
                      ..+.+|.+.++       +.+.+..+.+++.+...++..++.++.|+++||+|||+++..+..+..+..+......+. .
T Consensus       294 ~~~~lp~~l~~-------~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-~  365 (496)
T PRK03893        294 IQALLPTYLKT-------DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGA-N  365 (496)
T ss_pred             HHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccc-H
Confidence            34567777544       456777889999999999999999999999999999999998877766665544443331 1


Q ss_pred             HHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHH
Q 016048          104 FYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGS  177 (396)
Q Consensus       104 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~  177 (396)
                      .+...+..++.+. ......+...+++.|.+|+++|++.+++......+|..+||.+++.+    +|+..+...+...
T Consensus       366 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        366 VWVLGLLLFFQQM-LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHHHHHHHHH-HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            3444455555544 33334566778899999999999999999999999999999998876    5666665544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.45  E-value=1.6e-13  Score=128.68  Aligned_cols=164  Identities=13%  Similarity=0.114  Sum_probs=126.4

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc--CCchhhhH-
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY--GRKALLTV-   83 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~--Grk~~~~~-   83 (396)
                      ++......++..++.......+|.+..+        .+.+..+.++..++..++..+++++.|+++||.  ++|+...+ 
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  314 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD--------KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS  314 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence            4444455556666666666667777543        356667889999999999999999999999984  34443333 


Q ss_pred             -HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           84 -PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                       +.+..+++.++....++   ++.+++.+++.|+ +.+...+...+++.|.+|++++++.+++++...++|..+||.+++
T Consensus       315 ~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~-~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G  390 (455)
T TIGR00892       315 FALLFNGLTHLLCALAGD---YTGLVIYCIFFGL-SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAG  390 (455)
T ss_pred             HHHHHHHHHHHHHHHhch---HHHHHHHHHHHHH-HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccccee
Confidence             33444455556667777   8888899999999 888888899999999999999999999999999999999999988


Q ss_pred             Hh-----hhHHHHHHHHHHHHHHHH
Q 016048          163 FI-----STSAAFQAATAGSIISAV  182 (396)
Q Consensus       163 ~~-----~~~~~f~~~~~~~~~~~~  182 (396)
                      .+     +|++.|++.+++.++..+
T Consensus       391 ~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       391 RLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             eeehhcCCcchHHHHhhHHHHHHHH
Confidence            65     488888888877665544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.45  E-value=1.8e-12  Score=121.90  Aligned_cols=154  Identities=11%  Similarity=0.105  Sum_probs=132.8

Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhh--ccccccchhhHHHHHHHHHHHHHHHHHHhhhhh-hcchhHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK--FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSFGL  313 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~  313 (396)
                      +++.++.+....++..+.+++...++|.|+++.  +|++..+++...+...+...++. +.+|+++|| +|||+++..+.
T Consensus         8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~-~~~G~laDr~~G~~~~l~~~~   86 (475)
T TIGR00924         8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLT-SVGWWFGDRVWGTKKTMVLGG   86 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhcchHHHHHHHH
Confidence            456667777777788889999999999999887  89999999999999999999999 788999999 89999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCcc---chhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          314 LFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE---QGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       314 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      .+.+++.+++...++.+.... ..+.+++.+...|...++++|.+|+++   |+++.++.+...++|..++|.+.|++.+
T Consensus        87 ~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924        87 IVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988887765444433 455677888888999999999998764   8899999999999999999999999987


Q ss_pred             cc
Q 016048          390 DC  391 (396)
Q Consensus       390 ~~  391 (396)
                      +.
T Consensus       167 ~~  168 (475)
T TIGR00924       167 NY  168 (475)
T ss_pred             hc
Confidence            53

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.45  E-value=2e-12  Score=120.22  Aligned_cols=160  Identities=14%  Similarity=0.096  Sum_probs=129.6

Q ss_pred             cccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchh
Q 016048           24 VAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNF  103 (396)
Q Consensus        24 ~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~  103 (396)
                      ....+|.+.++       ..+.+..+.|++.+...++..++.++.+++.||.++|+.+..+.++.+++.++..+.++   
T Consensus       242 ~~~~~p~~~~~-------~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---  311 (417)
T PRK10489        242 VRVLYPALADE-------VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM---  311 (417)
T ss_pred             HHHhhHHHHHh-------ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch---
Confidence            34456767544       24556678899999999999999999999999988888888888888888888877777   


Q ss_pred             HHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHH
Q 016048          104 FYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSII  179 (396)
Q Consensus       104 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~  179 (396)
                      .+...++.++.|+ +.+...+...+++.|..|+++|++++++......+|..+||.+.+.+    +.+..+...++..++
T Consensus       312 ~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~  390 (417)
T PRK10489        312 WILAVLCLALFGY-LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            7777888889998 77777777889999999999999999999999999999999888876    556677777776666


Q ss_pred             HHHHHHHhcCCCCCC
Q 016048          180 SAVYMRIFLPESVRD  194 (396)
Q Consensus       180 ~~~~~~~~~~e~~~~  194 (396)
                      ..++....+||.++.
T Consensus       391 ~~~~~~~~~~~~~~~  405 (417)
T PRK10489        391 IGVLLLLVLGELRRF  405 (417)
T ss_pred             HHHHHHHhccccccc
Confidence            666666777776543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.44  E-value=5.8e-13  Score=121.96  Aligned_cols=164  Identities=18%  Similarity=0.187  Sum_probs=124.9

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      .+.+....+.............+.+.+        +.+.+..+.+...+...++..++.++.|+++||+|||+.+..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  278 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYGQ--------SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG  278 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            333444444444444334444455532        234555678899999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh--
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--  164 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--  164 (396)
                      +.+++.++..+.++.. ...++...++.|+ +.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+  
T Consensus       279 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       279 ISAVGMAAMLFIPMLN-DVLFLATVALVFF-TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHHHHHHHHHHcccch-hHHHHHHHHHHHH-HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9988888887776521 2334456777887 77777777888999999999999999999999999999999988765  


Q ss_pred             --hhHHHHHHHHHHHHHH
Q 016048          165 --STSAAFQAATAGSIIS  180 (396)
Q Consensus       165 --~~~~~f~~~~~~~~~~  180 (396)
                        +|++.|.+.+++.++.
T Consensus       357 ~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       357 EIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhchhhHHHHHHHHHHHh
Confidence              7888888877766554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.44  E-value=3.4e-12  Score=118.53  Aligned_cols=154  Identities=10%  Similarity=0.151  Sum_probs=125.9

Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhh-cchhHHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLSFGLLF  315 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~  315 (396)
                      +++.++..+.......+.+++...++|.|+.+.+|+++.+++...........++. +++|+++||+ |||+.+..+.++
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~-ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTP-ILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcHHHHHHHHHH
Confidence            45667777777778888899999999999999899999999999998888888888 7889999999 999999999999


Q ss_pred             HHHHHHHHHHhhh-hhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCc--cchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          316 GCVHMFLYSVAWS-SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASN--EQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       316 ~~i~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ..++.+++..... ...... ..+..++.+...+...+++.|.+|++  +|.++.++.+...++|+.++|.+.|++.+..
T Consensus        86 ~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~  165 (493)
T PRK15462         86 MAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY  165 (493)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9888776654321 121222 33344666666777889999999976  6999999999999999999999999997653

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.44  E-value=2e-12  Score=118.49  Aligned_cols=172  Identities=16%  Similarity=0.242  Sum_probs=127.0

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      +.+.+....++...........+|.+..+       +.+.+..+.|+..+.......++.++.|++.||+|||+.+..+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~  272 (375)
T TIGR00899       200 DTRLLFVACTLMWGCNILYIINMPLLIIH-------ELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAA  272 (375)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHH
Confidence            33434444444444344444555666544       23455567788888777778888899999999999999998887


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      ++..+......+.++   .+.+++.+++.|+ +.+...+....++.|..|+ ++++++++.+....+|..++|.+++.+ 
T Consensus       273 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~  347 (375)
T TIGR00899       273 LAGVAFYTGLAADNS---LWALLMLQLLNAI-FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILA  347 (375)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776666666666666   7777888999998 7787888888999999875 567999999999999999999888765 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 016048          165 ---STSAAFQAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       165 ---~~~~~f~~~~~~~~~~~~~~~~~~~e  190 (396)
                         +|+..|++.++..++..+.. .+++|
T Consensus       348 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~  375 (375)
T TIGR00899       348 ERWSYHAVYWFAIVMLIVALFCL-LLIKD  375 (375)
T ss_pred             HhccchhHHHHHHHHHHHHHHHH-heecC
Confidence               78889988888776665544 44443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.44  E-value=1.1e-12  Score=118.92  Aligned_cols=167  Identities=22%  Similarity=0.286  Sum_probs=144.6

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCch-hhhHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKA-LLTVPI   85 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~-~~~~~~   85 (396)
                      ++...+..+.............|.+..+.       .+.+..+.++..+...++..++.++.|++.||+|||+ .+..+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  249 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEV-------LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGL  249 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            34455566667777777777888886552       2556678899999999999999999999999999999 999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      .+..++.+.....++   .+...+..++.|+ +.+...+...+++.|..|+|+|++.++..+...++|..++|.+.+.+ 
T Consensus       250 ~~~~i~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~  325 (352)
T cd06174         250 LLAALGLLLLALAPS---LALLLVALLLLGF-GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL  325 (352)
T ss_pred             HHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999888   8889999999999 88999999999999999999999999999999999999999998875 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHH
Q 016048          165 ---STSAAFQAATAGSIISAVYM  184 (396)
Q Consensus       165 ---~~~~~f~~~~~~~~~~~~~~  184 (396)
                         +|+..+.+.+++.++..+..
T Consensus       326 ~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         326 DTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             cccCcchHHHHHHHHHHHHHHHh
Confidence               78899998888887766544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.43  E-value=1.2e-12  Score=121.28  Aligned_cols=154  Identities=16%  Similarity=0.133  Sum_probs=120.3

Q ss_pred             ccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccC
Q 016048           21 TSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRS  100 (396)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~  100 (396)
                      .......+|.+..+        .+.+..+.++..+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++
T Consensus       236 ~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (406)
T PRK11551        236 LYFLLNWLPSLLVG--------QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS  307 (406)
T ss_pred             HHHHHHHHHHHHHh--------CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            33334445666433        3555667899999999999999999999999999999998877777777777777777


Q ss_pred             chhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHH
Q 016048          101 RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATA  175 (396)
Q Consensus       101 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-----~~~~~f~~~~~  175 (396)
                         .+.+.+..++.|+ +.+...+...++..|.+|+++|++.+++.+....+|..+||.+++.+     +|...++....
T Consensus       308 ---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~  383 (406)
T PRK11551        308 ---FAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIP  383 (406)
T ss_pred             ---HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHH
Confidence               7777778888888 76777788899999999999999999999999999999999999876     34455555555


Q ss_pred             HHHHHHHHHHH
Q 016048          176 GSIISAVYMRI  186 (396)
Q Consensus       176 ~~~~~~~~~~~  186 (396)
                      ..++..+..+.
T Consensus       384 ~~~~~~~~~~~  394 (406)
T PRK11551        384 VILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHHH
Confidence            55554444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.42  E-value=2.6e-12  Score=121.20  Aligned_cols=167  Identities=16%  Similarity=0.043  Sum_probs=116.4

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      ++.+.+..++...........+|.|..+       +.+.+..+.++..+...++..++.+++|+++||+|||+.+.....
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~-------~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~  332 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQ-------ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA  332 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            3444445555555444456677888655       356677788999999999999999999999999999988776554


Q ss_pred             HhHHHHHHH--HhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhh-hhHHHHHHHHH
Q 016048           87 LSIIPLAIL--AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSG-AFVCGTISARF  163 (396)
Q Consensus        87 ~~~~~~~~~--~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~  163 (396)
                      +..++..+.  ...++   .+...+.+++.|+ ..............|..|+++|+.+.|+.+...++ |..++|.+.+.
T Consensus       333 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~  408 (467)
T PRK09556        333 LALIIFTLGVYQHATS---EYMYLASLFALGF-LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGM  408 (467)
T ss_pred             HHHHHHHHHHHHhcCc---HHHHHHHHHHHHH-HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence            444433222  23344   6666778888886 43333333346777999999999999999988886 66777766654


Q ss_pred             h-h---------------hHHHHHHHHHHHHHHHHHH
Q 016048          164 I-S---------------TSAAFQAATAGSIISAVYM  184 (396)
Q Consensus       164 ~-~---------------~~~~f~~~~~~~~~~~~~~  184 (396)
                      + +               |+..|++..+..++..+..
T Consensus       409 i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        409 IADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             HhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence            4 3               7888888766666655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.40  E-value=7.4e-12  Score=115.35  Aligned_cols=170  Identities=16%  Similarity=0.160  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      +..+...++...........++.+..+.       .+.+..+.+++.+...++..+++++.|+++||+|||+.... ..+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~  279 (390)
T PRK03545        208 VSLYLLTVVVVTAHFTAYSYIEPFVQQV-------AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IAL  279 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHH
Confidence            3333333333333333344556565442       34555678889999999999999999999999998876444 444


Q ss_pred             hHHHH-HHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh--
Q 016048           88 SIIPL-AILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--  164 (396)
Q Consensus        88 ~~~~~-~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--  164 (396)
                      ..++. .+....++   .+.++++.++.|+ +.+...+...+.+.|..| ++|+++++..+....+|..+||.+++.+  
T Consensus       280 ~~~~~~~l~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~  354 (390)
T PRK03545        280 LLVCLLLLLPAANS---EWHLSVLSIFWGI-AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL  354 (390)
T ss_pred             HHHHHHHHHHHhch---HHHHHHHHHHHHH-HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44443 33345566   7778888889998 766666777888888876 6889999999998999999999888875  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 016048          165 --STSAAFQAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       165 --~~~~~f~~~~~~~~~~~~~~~~~~~e  190 (396)
                        +++..|+..+.+.++..+......++
T Consensus       355 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (390)
T PRK03545        355 HLGLSSIGYVGAALALAALVWSILIFRR  382 (390)
T ss_pred             ccChhHHHHHHHHHHHHHHHHHHHHccc
Confidence              78999999988888877766565543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.40  E-value=9.1e-12  Score=114.94  Aligned_cols=148  Identities=12%  Similarity=0.070  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHH
Q 016048          242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF  321 (396)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~  321 (396)
                      +.++...++.....+....+++.|++++.|+++.+.|...+...+...+.. ++.|+++||+|||+.+..+.....++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~-~~~G~l~dr~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLG-IFGGAIADRFGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-hhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence            445566677777777788889999988889999999999999999999988 7778999999999999999999999998


Q ss_pred             HHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          322 LYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       322 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      .+...++.+.... .++.+++.+...|...+++.|.+|+++|+++.|+.+....+|..++|.+.|.+.++
T Consensus        92 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~  161 (400)
T PRK11646         92 TMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY  161 (400)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8887766655444 44557777777888899999999999999999999999999999999999998743

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.39  E-value=4.7e-12  Score=116.23  Aligned_cols=165  Identities=13%  Similarity=0.127  Sum_probs=136.7

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      ++++...+..++...+.....+..|.+.+|        .+.+..+.|++.++..++..+..++.+++.||+|+|+.+.++
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--------~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~  276 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--------AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS  276 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence            344555666677777777777788888643        466677889999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHH-HhhhhhhHHHHHHHHH
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFS-GIVSGAFVCGTISARF  163 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~  163 (396)
                      .+...+.....+++++   .+.+++.+.+.|+ +.+...+....++.+. |+++|++..++++ ...++|..+||.++|.
T Consensus       277 ~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~-~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       277 AIACVGRWAIIGAIEA---FPLIFLLQILHCG-TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             HHHHHHHHHHHHhHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988   8999999999999 8899999999999998 9999999999986 4678999999999988


Q ss_pred             hhh---HHHHHHHHHHHHHHHH
Q 016048          164 IST---SAAFQAATAGSIISAV  182 (396)
Q Consensus       164 ~~~---~~~f~~~~~~~~~~~~  182 (396)
                      +-.   ...|+..+++.++..+
T Consensus       352 l~~~~g~~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       352 IYPTLGAGTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHhccHHHHHHHHHHHHHHHH
Confidence            732   2456666666655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.39  E-value=1.7e-09  Score=98.57  Aligned_cols=362  Identities=17%  Similarity=0.150  Sum_probs=200.6

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      |+..+.++...++...+..+.--..|.++.+..+.   .+ .   ..+...-.-.+..++.++..|.+.||..|+++...
T Consensus         1 ~~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~---sL-l---~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~   73 (432)
T PF06963_consen    1 KRALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPG---SL-L---PVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRT   73 (432)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---Cc-H---HHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHH
Confidence            34567788999999999888888888887774321   11 1   22333333456678888999999999999998877


Q ss_pred             HHHHhHHHHHHHH------hccC------chhHHHHHHHHHHHhhhccch-hhHHHHHHHhcC----C--CcccchhHHH
Q 016048           84 PITLSIIPLAILA------YSRS------RNFFYAYYVLRTLTAMVCEGS-IHCLSLAYVADN----V--PPGRRASVFG  144 (396)
Q Consensus        84 ~~~~~~~~~~~~~------~~~~------~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~i~~~----~--~~~~r~~~~~  144 (396)
                      +.+.--++..+..      +...      ......+++.-.+.|. ..-. ......+.=.||    .  +++++.+.++
T Consensus        74 ~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA  152 (432)
T PF06963_consen   74 SLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA-IERLASIANTIAVERDWVVVIAGGDPGALARMNA  152 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH-HHHHHHhhhhheeccchhhhhcCCChhhHHHHHH
Confidence            6655332222111      2111      1112222222222221 1111 111112222344    2  3445566666


Q ss_pred             HHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhc-------CCCCCCcccccc-cccchhhhhhhh
Q 016048          145 IFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFL-------PESVRDEDLYTP-ILSSKAEISASC  212 (396)
Q Consensus       145 ~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~-------~e~~~~~~~~~~-l~~~~~~~~~~~  212 (396)
                      .+.-.=-+..+++|++.+.+    +.+....+.++..++..+.-++++       |+=..++++++. ..+..++..+++
T Consensus       153 ~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~  232 (432)
T PF06963_consen  153 TMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESS  232 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccccccccccccc
Confidence            66666667788888888776    455555555555555544432322       221111111000 000000000000


Q ss_pred             h----hhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHH
Q 016048          213 E----ESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAG  288 (396)
Q Consensus       213 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  288 (396)
                      +    .....+...+....|+.++    +++.+.. .+...+..+...++......|+..+ |+++...|..-....+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~w~~Y~----~q~vfla-s~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~G  306 (432)
T PF06963_consen  233 SDPSILKRLWNPLRTIIRGWRTYF----RQPVFLA-SFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFG  306 (432)
T ss_pred             chhhHHHHHHHHHHHHhccHHHHH----hCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence            0    0001111122233455544    4554443 3333344444455677778888887 999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH---Hhhh-h--hHHHHHHHHH-----HhhhhhhhhhhHHHhhcc
Q 016048          289 TISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS---VAWS-S--WVPYAAAVFS-----ILSVFSHPCLRTIVSKQV  357 (396)
Q Consensus       289 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~---~~~~-~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  357 (396)
                      +.++ .+.+++.+|+|..+.-..+......++.+-.   +.+. +  ......++.+     +|.=.......-+++|.+
T Consensus       307 l~gT-~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V  385 (432)
T PF06963_consen  307 LLGT-WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENV  385 (432)
T ss_pred             HHHH-HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccC
Confidence            9999 8889999999988876666665444333221   1111 1  1111122222     333344567778899999


Q ss_pred             CCccchhHhhhHHHHHHHHHHhh
Q 016048          358 ASNEQGKAQGCISGICSFANLVS  380 (396)
Q Consensus       358 p~~~~g~~~g~~~~~~~~g~~~~  380 (396)
                      |+++||+.+|+-+..+++...+.
T Consensus       386 ~~~~Rg~v~gvq~sl~~lf~ll~  408 (432)
T PF06963_consen  386 PESERGAVSGVQNSLQSLFELLS  408 (432)
T ss_pred             CHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999988776654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK12382 putative transporter; Provisional

Probab=99.37  E-value=6.8e-12  Score=115.70  Aligned_cols=158  Identities=16%  Similarity=0.204  Sum_probs=126.2

Q ss_pred             HhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHh
Q 016048           18 CFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAY   97 (396)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~   97 (396)
                      ...........|.+..+.        +.+  ..++..+.+.++..+++++.|++.||+||||.+..+..+.+++.++..+
T Consensus       229 ~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~  298 (392)
T PRK12382        229 GVGFAVIGTFVSLYFASK--------GWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL  298 (392)
T ss_pred             HHHHhHHHHHHHHHHHhc--------CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH
Confidence            344444555566665442        111  2355666778888999999999999999999999999999888888888


Q ss_pred             ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHH
Q 016048           98 SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAA  173 (396)
Q Consensus        98 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~  173 (396)
                      .++   .+.+++..++.|+ +.+...+...+.+.|.+|+|+|++++++.+....+|..+||.+.+.+    +|+..|.+.
T Consensus       299 ~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~  374 (392)
T PRK12382        299 APT---AWVALAGAALTGA-GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAG  374 (392)
T ss_pred             ccc---HHHHHHHHHHHHH-HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            887   7778889999998 87888888888899999999999999999999999999999888865    789999998


Q ss_pred             HHHHHHHHHHHHHhcC
Q 016048          174 TAGSIISAVYMRIFLP  189 (396)
Q Consensus       174 ~~~~~~~~~~~~~~~~  189 (396)
                      +++.++..+..+...+
T Consensus       375 ~~~~~~~~~~~~~~~~  390 (392)
T PRK12382        375 AISAVLGIIVTILSFR  390 (392)
T ss_pred             HHHHHHHHHHHHhhcc
Confidence            8887777666544433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.36  E-value=1.1e-11  Score=114.15  Aligned_cols=177  Identities=11%  Similarity=0.066  Sum_probs=128.8

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      .+.+.+..++...+.......+|.+..+        .+.+..+.|...+.+.++..++.++.|++.||+|||+.+..+..
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~--------~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~  278 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIE--------IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALV  278 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence            3444445555555655666667777544        25566788999999999999999999999999999999999888


Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCC-cccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-PGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      +..++..+....++.  ...+.  -++.|+ +.+...+.......|..+ +++|++.++..+....++..++|.+.+++ 
T Consensus       279 l~~~~~~~~~~~~~~--~~~~~--~~l~g~-g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~  353 (393)
T PRK09705        279 LQLVGFCGFIWLPLQ--LPVLW--AMVCGL-GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR  353 (393)
T ss_pred             HHHHHHHHHHHccch--HHHHH--HHHHHH-hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877777665543331  22222  245677 667777777767777775 67899999999999999999999998877 


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 016048          165 ----STSAAFQAATAGSIISAVYMRIFLPESVRDED  196 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~  196 (396)
                          +++..|.+..+..++..+......||++.++.
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        354 SISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence                35667777777777766666677787765443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.35  E-value=2e-11  Score=112.44  Aligned_cols=148  Identities=17%  Similarity=0.145  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      |+++.+.+..++..+.........+... +.++.++.+.++..+...+...+.. ++.|++.||+|||+++..+..+..+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~l~~~l~~-~~~G~laDr~grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALL-KELHYPDWSQPLLQMFFVLAYIVLA-PFVGAFADSFPKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHH-hhhhHhhhccCCchhhHHHHHHHHH
Confidence            4566667777776665555555555554 4558888888999999999999999 7778999999999999999988887


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          319 HMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      +.+......+.  ...-++.+++.+...|...+++.|.+|+++|++++|+.+....++..+||.++|.+.++
T Consensus        81 ~~~~~~~~~~~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         81 GCLLMLFGIHP--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77665554443  33345668888999999999999999999999999999999999999999999999875

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.35  E-value=2.4e-11  Score=114.40  Aligned_cols=154  Identities=11%  Similarity=0.059  Sum_probs=130.1

Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhh-hcchhHHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSFGLLF  315 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~  315 (396)
                      ++|.++..+...+...+.+++...+++.|+++.+|++..+.++....+.....+.. +++|+++|| +|||+++..+.++
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~-~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLI-SIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhHHHhhhhccchHHHHHHHHHH
Confidence            45677777788888889999999999999999999999998888888777777777 678999999 9999999999999


Q ss_pred             HHHHHHHHHHhhhhhH-H-HHHHHHHHhhhhhhhhhhHHHhhccCCcc--chhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          316 GCVHMFLYSVAWSSWV-P-YAAAVFSILSVFSHPCLRTIVSKQVASNE--QGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       316 ~~i~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ..++.+......+... . ....+.+++.+...|...+++.|.+|+++  |++++++.+...++|..++|.+.|++.++.
T Consensus        91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~  170 (489)
T PRK10207         91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF  170 (489)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999888877654332 2 23455678888888999999999998874  578999999999999999999999998864

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.34  E-value=3e-11  Score=109.56  Aligned_cols=145  Identities=21%  Similarity=0.284  Sum_probs=118.7

Q ss_pred             HHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q 016048          246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSV  325 (396)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  325 (396)
                      +..++...........+|.++.+++|.++.+.++..+...+...+++ +..|++.||+|||+.+..+.++.+++.++..+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFS-PFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHH-HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            34455555555666667757777789999999999999999999999 77789999999999999999999998555555


Q ss_pred             hhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          326 AWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       326 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ..+.+.... .++.+++.+...+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.++.
T Consensus        82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  148 (352)
T PF07690_consen   82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF  148 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC
T ss_pred             hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc
Confidence            444443333 556688888999999999999999999999999999999999999999999998654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.34  E-value=2e-11  Score=113.96  Aligned_cols=147  Identities=11%  Similarity=0.144  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHH
Q 016048          243 QAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFL  322 (396)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~  322 (396)
                      ..++..++..+........+|.+.++ +|+++.+.+...+...++..+++ +..|++.||+|||+.+..+.++..++.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~~~~~~~~~~~~~~~  104 (434)
T PRK11663         27 TMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSK-FVSGIVSDRSNARYFMGIGLIATGIINIL  104 (434)
T ss_pred             HHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH-hhhhHHHhhcCCchhHHHHHHHHHHHHHH
Confidence            34444444444445566677777665 79999999999999999999999 77789999999999999999999999888


Q ss_pred             HHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          323 YSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       323 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ....++.+.... .++.+++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+.+
T Consensus       105 ~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  174 (434)
T PRK11663        105 FGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY  174 (434)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            888777665544 344577777778899999999999999999999999999999999999999988754

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.34  E-value=2.8e-11  Score=113.95  Aligned_cols=167  Identities=20%  Similarity=0.215  Sum_probs=134.8

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      .+..+....++..+....+...+|.+..+       +++.++...|++.+++.+|.++++++.+++.+|+++++.+..+.
T Consensus       219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~-------~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~  291 (524)
T PF05977_consen  219 PLRSVLLRSFLFNLFASAVWALLPLFARD-------VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS  291 (524)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhHHHHH-------HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH
Confidence            34444444455555555566678888665       34556678899999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      ++.+++.+..+++++   .+..++.-++.|+ +.....+...+.+.+..|++.|||++++++.....+..+|..+.|.+ 
T Consensus       292 ~~~a~~~~~lal~~~---~~~~~~~l~l~G~-~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  292 LLFALALLLLALSPS---FWLALIALFLAGA-AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             HHHHHHHHHHhcchH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998   8888889999998 88888888889999999999999999999888887777777777765 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHH
Q 016048          165 ---STSAAFQAATAGSIISAVY  183 (396)
Q Consensus       165 ---~~~~~f~~~~~~~~~~~~~  183 (396)
                         +-+..+.+.++..++..++
T Consensus       368 ~~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  368 DHFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHH
Confidence               5667777766655544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.33  E-value=3.1e-11  Score=110.81  Aligned_cols=151  Identities=13%  Similarity=0.049  Sum_probs=128.9

Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC  317 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  317 (396)
                      ++.++.+....++...........+|.|.++ +|.|..+.|+..+...++..+++ +..|++.||+|||+.+..+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~-~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGT-LLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3557777777778888888888899999876 59999999999999999999999 677899999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          318 VHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       318 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ++.....+.++.+.... .++.|++.+...|.......+..|+++|+++.+..+....+|..++|.+.+.+.+.
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            88888887777665554 45557777777888888888889999999999999999999999999999988765

>PRK03699 putative transporter; Provisional

Probab=99.33  E-value=1.4e-11  Score=113.62  Aligned_cols=170  Identities=10%  Similarity=0.026  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      +.+.+..++...........+|.+..+       +.+.+..+.+...+.+.++..++.++.|+++||+|||+.+.....+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~p~~l~~-------~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~  280 (394)
T PRK03699        208 LFLAIAALLYILAQLTFISWVPEYAQK-------KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGL  280 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Confidence            334445555555555556677888655       3456677889999999999999999999999999999999988877


Q ss_pred             hHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh---
Q 016048           88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI---  164 (396)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~---  164 (396)
                      ..+...+....++   .+.+.+..++.|+ +.+...+...++..|..| +++++..+.......+|..++|.+.+.+   
T Consensus       281 ~~~~~~~~~~~~~---~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~  355 (394)
T PRK03699        281 ALVLMYLFVNTDD---PSHLLYAILGLGF-FSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH  355 (394)
T ss_pred             HHHHHHHHHHcCC---chHHHHHHHHHHH-HHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            7777777667776   6666677788888 777777887888888776 5567788888888899999999988765   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 016048          165 -STSAAFQAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       165 -~~~~~f~~~~~~~~~~~~~~~~~~~e  190 (396)
                       +++..++..+++.++..+.. ..+++
T Consensus       356 ~g~~~~~~~~~~~~~~~~~~~-~~~~~  381 (394)
T PRK03699        356 FGLQAALLTANGLYAVVFVMC-ILLGF  381 (394)
T ss_pred             hCchhhhhhhHHHHHHHHHHH-HHHHH
Confidence             77888888877777665543 34443

>PRK10504 putative transporter; Provisional

Probab=99.32  E-value=3.5e-11  Score=113.82  Aligned_cols=151  Identities=11%  Similarity=0.006  Sum_probs=126.2

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      +.++......++...........+|.+.++ +|.++.+.++..+...+...++. ++.|++.||+|||+.+..+..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~   87 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVML-PASGWLADRVGVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHHHH
Confidence            455666667777777777778888988876 69999999999988888888888 7778999999999999988888888


Q ss_pred             HHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          319 HMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      +.+.....++.+..+. ..+.+++.+...|...+.+.|.+|+++|+++.|+.+....+|..++|.+.|.+.++.
T Consensus        88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~  161 (471)
T PRK10504         88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA  161 (471)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc
Confidence            8777766655554444 556688888888999999999999999999999999999999999999999998764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.32  E-value=7.7e-12  Score=118.36  Aligned_cols=149  Identities=16%  Similarity=0.108  Sum_probs=111.5

Q ss_pred             hhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHh---ccCch-----hHHHHHHHHHHHh
Q 016048           44 SLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAY---SRSRN-----FFYAYYVLRTLTA  115 (396)
Q Consensus        44 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~l~~~r~l~G  115 (396)
                      +.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++   .....     ....+....++.+
T Consensus       315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (481)
T TIGR00879       315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA  394 (481)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence            444456788888889999999999999999999999999998888887776662   11110     1223333333333


Q ss_pred             hhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016048          116 MVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPES  191 (396)
Q Consensus       116 ~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~  191 (396)
                      . ......+....++.|.+|+++|++++++.+....+|..++|.+.+.+    +|++.|++.++++++..+...++.||+
T Consensus       395 ~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       395 F-FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             H-HHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccC
Confidence            3 22334466778889999999999999999999999999999887764    688889988888888777776677775


Q ss_pred             CC
Q 016048          192 VR  193 (396)
Q Consensus       192 ~~  193 (396)
                      ++
T Consensus       474 ~~  475 (481)
T TIGR00879       474 KG  475 (481)
T ss_pred             CC
Confidence            54

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.31  E-value=4.7e-11  Score=111.19  Aligned_cols=178  Identities=19%  Similarity=0.243  Sum_probs=143.9

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCc--hh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRK--AL   80 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk--~~   80 (396)
                      |.+++...++..++..-+.+.+......|..+       +++.+..+...+.-+..+...+|++++|++.||+|.|  ++
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~-------~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~  351 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATE-------VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRT  351 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH
Confidence            34556666777777777777777777777544       6677888888888889999999999999999999999  89


Q ss_pred             hhHHHHHhHHHHHHHHh--------ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhh
Q 016048           81 LTVPITLSIIPLAILAY--------SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSG  152 (396)
Q Consensus        81 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  152 (396)
                      +..+.++..+..+...+        .++   .+.+.+.-++.|+ ..|..++...++.+|..|+++.+..+|++....-.
T Consensus       352 l~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~-~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~  427 (477)
T PF11700_consen  352 LLISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGL-FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA  427 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            88888887555554444        445   6788889999999 99999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016048          153 AFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLPESV  192 (396)
Q Consensus       153 g~~~g~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~  192 (396)
                      ...+||++-+.+     +.|+.+....++.++..++. ..+++++
T Consensus       428 ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~  471 (477)
T PF11700_consen  428 SSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEK  471 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchh
Confidence            999999998876     35888887777777666554 5555543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.31  E-value=5.1e-11  Score=110.44  Aligned_cols=132  Identities=8%  Similarity=-0.022  Sum_probs=113.4

Q ss_pred             hhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-
Q 016048          256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-  334 (396)
Q Consensus       256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-  334 (396)
                      .......| .+++++|++..+.++..+...++..+++ +..|++.||+|||+.+..+.++..++.++..+.++.+.... 
T Consensus        25 ~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  102 (412)
T TIGR02332        25 INIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICG-IPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLL  102 (412)
T ss_pred             hhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            33333344 6777889999999999999999999999 66689999999999999999999999988888777655544 


Q ss_pred             HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          335 AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      -++.|++.+...|....++.|.+|+++|+++.|+.+....+|..++|.+.+++.+
T Consensus       103 r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332       103 RILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5566888888889999999999999999999999999999999999999998874

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.31  E-value=3.3e-11  Score=109.85  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY  323 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  323 (396)
                      .....++...........+|.|..+ .+.++.+.++..+...+...++. +..|++.||+|||+.+..+..+..++..+.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLS-PIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHH-HhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            3455555666666667777888776 48999999999999999999999 777899999999999999988888877777


Q ss_pred             HHhh-----hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          324 SVAW-----SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       324 ~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ....     +.+.... ..+.+++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  155 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL  155 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6665     5454444 455578888888999999999999999999999999999999999999999988754

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.9e-11  Score=108.32  Aligned_cols=370  Identities=15%  Similarity=0.123  Sum_probs=207.8

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccc----ccCCchh
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD----KYGRKAL   80 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grk~~   80 (396)
                      +.+..+....+-..+++..-...+|+|+.+        .+++....+.+--...+...+.+|+.|..+|    ||||||.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~--------lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP  103 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS--------LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP  103 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH--------cCCCcccccccccccccccceecccccccccccccccccccc
Confidence            344555666667777777777888888555        3444456677777778888999999999999    5899888


Q ss_pred             hhH-HHHHhHHHHHHHHhccCch--------------hHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchh-HHH
Q 016048           81 LTV-PITLSIIPLAILAYSRSRN--------------FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRAS-VFG  144 (396)
Q Consensus        81 ~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~-~~~  144 (396)
                      ++. +.....++..+.+++.+..              ....++++..+.=+ +.........+++.|...++++.+ +++
T Consensus       104 fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~-A~n~~qgp~ra~L~Dl~~~d~~~~~Ans  182 (498)
T KOG0637|consen  104 FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDV-ANNTLQGPCRALLADLARGDAKKTRANS  182 (498)
T ss_pred             hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHh-hhhhhhhhHHHHHHHhccChhhhhccch
Confidence            777 5555667777777765421              12344555555666 666777889999999998777777 999


Q ss_pred             HHHHhhhhhhHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHH-------HhcCCCCC--Ccccccccccchhhhhhhhh
Q 016048          145 IFSGIVSGAFVCGTISARFISTSA--AFQAATAGSIISAVYMR-------IFLPESVR--DEDLYTPILSSKAEISASCE  213 (396)
Q Consensus       145 ~~~~~~~~g~~~g~~~~~~~~~~~--~f~~~~~~~~~~~~~~~-------~~~~e~~~--~~~~~~~l~~~~~~~~~~~~  213 (396)
                      .+....++|..+|..++.+.+|+-  +|.....+-+.+..+-.       +..+++..  ....++.++....+.+..  
T Consensus       183 ~f~~f~avGnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~~~~~~~--  260 (498)
T KOG0637|consen  183 VFSFFMAVGNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKGTTARSK--  260 (498)
T ss_pred             hHHHHHHhcceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCccccccc--
Confidence            999999999999999998888753  33322222222221111       11111111  000000000000000000  


Q ss_pred             hhhhhhhhhccCCChhHHhh-hhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhh-hcccccc----------------
Q 016048          214 ESTKKLQVFKRLPSIDDMVH-LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKA-KFHFNKN----------------  275 (396)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----------------  275 (396)
                              ..+.....+.+. ..+.+|.++.+++...+.+++.....-+...++-+ .|+=++.                
T Consensus       261 --------~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~  332 (498)
T KOG0637|consen  261 --------SSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVR  332 (498)
T ss_pred             --------ccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccc
Confidence                    000000111111 12245778888888888877766665555555433 2322211                


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HH------------------
Q 016048          276 QFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AA------------------  336 (396)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~------------------  336 (396)
                      .-.+=+.++.+...+.+ ....++.||+|-|+.++.+.....++..+.+...+...... ..                  
T Consensus       333 ~G~~GL~ins~~lgi~S-~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~  411 (498)
T KOG0637|consen  333 MGCLGLMLNSIVLGIYS-LLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALA  411 (498)
T ss_pred             cchHHHHHHHHHHHHHH-HHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHH
Confidence            12333556777777777 55678999999555555444433344333333222111111 00                  


Q ss_pred             ---HHHHhhhhhhhhhhHHHhhccCCc--cchhHhhhHHHHHHHHHHhhhhhhhhhhhcccCC
Q 016048          337 ---VFSILSVFSHPCLRTIVSKQVASN--EQGKAQGCISGICSFANLVSPLAFSPLTGDCRFS  394 (396)
Q Consensus       337 ---~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  394 (396)
                         ..+.-....+.+.++..+......  -+|...|+.+..-.+...+.....|.+.+..+..
T Consensus       412 ~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~  474 (498)
T KOG0637|consen  412 LYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGG  474 (498)
T ss_pred             HHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCc
Confidence               011111222233333333222222  2366667777777788888888888888776543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.31  E-value=6.9e-11  Score=111.93  Aligned_cols=155  Identities=15%  Similarity=0.106  Sum_probs=123.4

Q ss_pred             cCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhh-hcchhHHHHHHH
Q 016048          236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSFGLL  314 (396)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~  314 (396)
                      ++++.++..+...++..+.+++...+++.|+++.+|++..+.+.............. +++|++.|| +|||+.+..+.+
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~-~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLV-AIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchHHHHHHHHH
Confidence            345568888888888889999999999999999999999888777766555545444 577999999 599999999999


Q ss_pred             HHHHHHHHHHHhhh-hhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCcc--chhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          315 FGCVHMFLYSVAWS-SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE--QGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       315 ~~~i~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      +..++..++.+..+ .+.... ..+.+++.+...+...++..|.+|+++  ++.+.++.+...++|..++|.+.|++.|+
T Consensus        97 ~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~  176 (500)
T PRK09584         97 VLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK  176 (500)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99988887776543 222222 355677778788888899999998654  45688888999999999999999999886


Q ss_pred             c
Q 016048          391 C  391 (396)
Q Consensus       391 ~  391 (396)
                      .
T Consensus       177 ~  177 (500)
T PRK09584        177 Y  177 (500)
T ss_pred             h
Confidence            4

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.30  E-value=2.4e-09  Score=95.85  Aligned_cols=323  Identities=16%  Similarity=0.115  Sum_probs=178.5

Q ss_pred             HHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHH
Q 016048           50 SGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAY  129 (396)
Q Consensus        50 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  129 (396)
                      .|.+.-+..+...+..+.+.++.+|...+.=.....+++.++.++.+++++   .+.=+++-.+.++ +.|........+
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~-ssg~GE~tfL~l  136 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASL-SSGLGEVTFLSL  136 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhh-hhhhhHHHHHHH
Confidence            344555566677777778888999998766667777788899999999998   8888899999998 777776666665


Q ss_pred             HhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccc
Q 016048          130 VADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSS  204 (396)
Q Consensus       130 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~  204 (396)
                      .. .+++    ...+-+..+.+.+.++|+..-..+     +.|..+.....++++..+..++.+|+++.+++..+.-.+.
T Consensus       137 t~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~  211 (402)
T PF02487_consen  137 TH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESED  211 (402)
T ss_pred             HH-hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCC
Confidence            44 5553    345667777777777776544332     4477788877777766665556666543322111100000


Q ss_pred             hhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhH-HHHh-hhhccccccchhhHHH
Q 016048          205 KAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSM-MYYL-KAKFHFNKNQFADLMV  282 (396)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~g~~~~~~~~~~~  282 (396)
                      +.+++..+++..+.+++...+.++++-++.+   |.+...++-.+...+..+.++.-+ +... .....-..++..++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~---k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~  288 (402)
T PF02487_consen  212 EAEDDLLESETSESKPDSSSKLSFKEKLKRL---KPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQL  288 (402)
T ss_pred             cccccccccccccccccccchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHH
Confidence            0000000000011111111222333322222   222222222233333333332222 2221 1222222345566667


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH---HhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccC
Q 016048          283 IAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS---VAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVA  358 (396)
Q Consensus       283 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p  358 (396)
                      .+.++..+++ -... +. |+.+.+.+..-..+..+.+++-.   +.++.|..+. ++.-|+..|..+.-.+..+.|..|
T Consensus       289 ~YQ~GVFISR-SS~~-~~-rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~  365 (402)
T PF02487_consen  289 LYQLGVFISR-SSLP-FF-RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVP  365 (402)
T ss_pred             HHHHHHhhhh-ccee-ee-ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Confidence            7777766666 2211 11 23332332222222222222222   2234444443 334477777888888888899999


Q ss_pred             CccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          359 SNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       359 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                      +++|.-++|.......+|..++..++-++
T Consensus       366 ~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  366 PEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999888888877665443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.30  E-value=3.2e-11  Score=111.12  Aligned_cols=167  Identities=20%  Similarity=0.199  Sum_probs=118.1

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchh--hhH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKAL--LTV   83 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~--~~~   83 (396)
                      .++...+..++............|.+..+       +.+.+..+.++..+...++..++.++.|+++||+|||+.  ...
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  288 (399)
T TIGR00893       216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQ-------ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA  288 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            34455666677777777777778888655       335566788999999999999999999999999999961  111


Q ss_pred             ------HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHH
Q 016048           84 ------PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        84 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  157 (396)
                            +.++..+........++   .+.......+.+. +.+ ..+...+++.|..|+++|++++++.+....+|..++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~  363 (399)
T TIGR00893       289 RKTAIIAGLVLSLLMFATNYVNI---PYAALALVALGFF-GLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVG  363 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccchh---HHHHHHHHHHHHh-chh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhh
Confidence                  11111111111111222   4444444444444 444 778899999999999999999999999999999999


Q ss_pred             HHHHHHh----h-hHHHHHHHHHHHHHHHHHH
Q 016048          158 TISARFI----S-TSAAFQAATAGSIISAVYM  184 (396)
Q Consensus       158 ~~~~~~~----~-~~~~f~~~~~~~~~~~~~~  184 (396)
                      |.+.+.+    + |+..|.+.++..++..+..
T Consensus       364 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       364 PIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            9998876    5 8888888877776665544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.29  E-value=6.6e-11  Score=108.83  Aligned_cols=139  Identities=11%  Similarity=0.005  Sum_probs=115.6

Q ss_pred             HHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 016048          251 SNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSW  330 (396)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  330 (396)
                      ...........+|.+. +++|.++.+.++..+...++..+++ ++.|++.||+|||+.+..+..+..++.+.....++.+
T Consensus        17 ~~~~~~~~~~~~p~~~-~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~   94 (385)
T TIGR00710        17 GPLGIDMYLPAFPEIA-ADLSTPASIVQMTLTLYLLGFAAGQ-LLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE   94 (385)
T ss_pred             HHHHHHHhcccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence            3333344444555554 5579999999999999999999999 7778999999999999999999999888888777665


Q ss_pred             HHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          331 VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       331 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .... .++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.
T Consensus        95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  156 (385)
T TIGR00710        95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL  156 (385)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5554 455677788888999999999999999999999999999999999999999888754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09952 shikimate transporter; Provisional

Probab=99.29  E-value=7.3e-11  Score=110.32  Aligned_cols=167  Identities=14%  Similarity=0.142  Sum_probs=110.8

Q ss_pred             HHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHH
Q 016048           14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLA   93 (396)
Q Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~   93 (396)
                      .+...+......+..|.+..+.       .+.+......+..+..+...++.++.|+++||+|||+.+..+.++..++.+
T Consensus       259 ~~~~~~~~~~~~~~~~~y~~~~-------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~  331 (438)
T PRK09952        259 RLCELLTMYIVTAFALNYSTQN-------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3333444455556667776543       233333334444455666778888999999999999999888776655543


Q ss_pred             HHHh---ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHH-hhhhhhHHHHHHHHHh-----
Q 016048           94 ILAY---SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSG-IVSGAFVCGTISARFI-----  164 (396)
Q Consensus        94 ~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~~-----  164 (396)
                      ....   ..+  ..+.+++..++.++ +.+...+...++++|.+|++.|+...++... +..+|..++|.+.+.+     
T Consensus       332 ~~~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~  408 (438)
T PRK09952        332 PFFMALEAQS--IFWIVFFSIMLANI-AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG  408 (438)
T ss_pred             HHHHHHHcCC--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3322   222  14444556666677 6677778889999999999999888888544 4457888888888775     


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016048          165 -STSAAFQAATAGSIISAVYMRIFLPES  191 (396)
Q Consensus       165 -~~~~~f~~~~~~~~~~~~~~~~~~~e~  191 (396)
                       +|+..+...++..++..+.. +.+||+
T Consensus       409 ~~~~~~~~~~~~~~~i~~v~~-~~~~~~  435 (438)
T PRK09952        409 GSWHSVAIYLLAGCLISAMTA-LLMKDN  435 (438)
T ss_pred             CCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence             36777777666666655544 456664

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.28  E-value=1.2e-10  Score=107.15  Aligned_cols=147  Identities=14%  Similarity=0.119  Sum_probs=108.5

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      |.+....+.........+......+.+-++.+|+|+++.+++.+...+...+.+ +..|++.||+|.|++...+.++..+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~r-ip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLR-VPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHH
Confidence            444444444333333333333334444444689999999999999999999998 4558999999999999999999888


Q ss_pred             HHHHHHHh-----hhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          319 HMFLYSVA-----WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       319 ~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                      ..+..++.     ++.+...+ .++.|++ +..++.....+++.+|+++||++.|+....+++|..+++.+.+.+
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~  186 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV  186 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            88888875     44444444 4555665 668888999999999999999999999777777777666655543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.28  E-value=1.7e-10  Score=106.31  Aligned_cols=133  Identities=11%  Similarity=-0.005  Sum_probs=114.2

Q ss_pred             hhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-H
Q 016048          257 GLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-A  335 (396)
Q Consensus       257 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~  335 (396)
                      .....+|.+. +.+|+++.+.+...+...+...+++ ++.+.+.||+|||+.+..+..+.+++.++....++.+..+. -
T Consensus        38 ~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  115 (394)
T PRK10213         38 LPVSLLTPMA-QDLGISEGVAGQSVTVTAFVAMFAS-LFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR  115 (394)
T ss_pred             HHHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence            3344566655 4569999999999999999999999 66689999999999999999999998888887776666555 4


Q ss_pred             HHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          336 AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .+.+++.+...+...+++.|.+|+++|+++.++......+|..++|.+.+.+.++.
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~  171 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI  171 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            56688888888999999999999999999999999999999999999999998764

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.28  E-value=1.1e-10  Score=106.67  Aligned_cols=148  Identities=18%  Similarity=0.194  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHH
Q 016048          241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM  320 (396)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~  320 (396)
                      ++..++..+...........+.|.++++.+|+|+.+.++..+...++..++. +..|++.||+|||+.+..+.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLR-IILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            3445555556566666677778877888899999999999999999999999 777899999999999999999999998


Q ss_pred             HHHHHhh-hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          321 FLYSVAW-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       321 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ++..+.+ +.+...+ .++.+++.+ ..+....++.|.+|+++|+++.++.....++|..+++.+.+.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  152 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS  152 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            8888877 6555544 344465543 4566778899999999999999999988888888888888777653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.28  E-value=1.5e-10  Score=107.13  Aligned_cols=148  Identities=13%  Similarity=0.029  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHH
Q 016048          242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF  321 (396)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~  321 (396)
                      ....+..+...+.........|. +++.+|+++.+.++..+...++..++. +..|++.||+|||+.+..+.++.+++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~Dr~g~r~~~~~~~~~~~~~~~   92 (405)
T TIGR00891        15 SAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGA-LMFGLWGDRYGRRLPMVTSIVLFSAGTL   92 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            33444444444444445555554 456679999999999999999999999 7778999999999999999999888888


Q ss_pred             HHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          322 LYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       322 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      +..+.++.+.... .++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus        93 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891        93 ACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8877776665544 455678888888999999999999999999999999999999999999999887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.26  E-value=4.9e-11  Score=113.08  Aligned_cols=144  Identities=16%  Similarity=0.117  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhcc--CchhHHHHHHHHHHHhhhccc-hhhHH
Q 016048           49 LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR--SRNFFYAYYVLRTLTAMVCEG-SIHCL  125 (396)
Q Consensus        49 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~-~~~~~  125 (396)
                      ..++......+...++.++.|+++||+|||+.++.+.++.+++.++.+...  +.. ......+-++.+. +.+ ...|.
T Consensus       307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~  384 (479)
T PRK10077        307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-GIVALLSMLFYVA-AFAMSWGPV  384 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHH-HHhccccch
Confidence            345555667778889999999999999999999999999888877765432  211 1122223333333 222 23467


Q ss_pred             HHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 016048          126 SLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR----------FISTSAAFQAATAGSIISAVYMRIFLPESVRD  194 (396)
Q Consensus       126 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~----------~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  194 (396)
                      ...++.|.+|+++|++++++......+|..+++.+..          ..+|++.|++.+++.++..++.+++.||++++
T Consensus       385 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  463 (479)
T PRK10077        385 CWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  463 (479)
T ss_pred             hHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            7899999999999999999999988888887754433          23677888888887777777776777876543

>TIGR00895 2A0115 benzoate transport

Probab=99.26  E-value=1.3e-10  Score=107.22  Aligned_cols=134  Identities=17%  Similarity=0.100  Sum_probs=112.0

Q ss_pred             hhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-
Q 016048          256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-  334 (396)
Q Consensus       256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-  334 (396)
                      .......|.+ .+.+|.++.+.+...+...++..++. ++.+++.||+|||+.+..+..+..++.++.....+.+...+ 
T Consensus        34 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (398)
T TIGR00895        34 AAMGFAAPAI-SAEWGLDPVQLGFLFSAGLIGMAFGA-LFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLIL  111 (398)
T ss_pred             HHHHhhHHHH-hhccCCCHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            3334444544 45579999999999999999999999 77789999999999999999888888888777766555444 


Q ss_pred             HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          335 AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ..+.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus       112 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  168 (398)
T TIGR00895       112 RFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF  168 (398)
T ss_pred             HHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc
Confidence            455677788888999999999999999999999999999999999999999988754

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.26  E-value=3.1e-11  Score=111.17  Aligned_cols=160  Identities=14%  Similarity=0.057  Sum_probs=115.3

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      +.......+..........+.+|.+..+.       .+.+..+.+...+...++..++.++.|+++||+|||+.+.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  293 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQT-------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            34444555555555666667778886552       34555678888899999999999999999999999998876554


Q ss_pred             HhHHHH--HHHHhc--cCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHH-HHhhhhhhHHHHHHH
Q 016048           87 LSIIPL--AILAYS--RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIF-SGIVSGAFVCGTISA  161 (396)
Q Consensus        87 ~~~~~~--~~~~~~--~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~  161 (396)
                      +..+..  ....+.  ++   .+.+....++.|+ +.+...+...+++.|.+|+++|++++++. +....+|..++|.++
T Consensus       294 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~  369 (394)
T TIGR00883       294 LAALLAVPLLMALLDSGS---FTLFFFLVLGLAL-IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA  369 (394)
T ss_pred             HHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHH-HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH
Confidence            444333  222222  33   6667777888888 77788888999999999999999999874 555667888888888


Q ss_pred             HHh----h-hHHHHHHHHHHH
Q 016048          162 RFI----S-TSAAFQAATAGS  177 (396)
Q Consensus       162 ~~~----~-~~~~f~~~~~~~  177 (396)
                      +.+    + |+..++...+..
T Consensus       370 g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       370 AALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHcCcchhHHHHHHHHH
Confidence            875    4 666655554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.25  E-value=1.6e-10  Score=106.15  Aligned_cols=151  Identities=11%  Similarity=0.067  Sum_probs=125.7

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      +.++......+............+|.+. +++|.+..+.++..+...++..+++ +..|++.||+|||+.+..+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELA-HDVGISIPAAGHMISYYALGVVVGA-PIIALFSSRYSLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHH-HHcCCCHHHHhHHHHHHHHHHHHHH-HHHHHHHccCccHHHHHHHHHHHHH
Confidence            4455566666666666666667777765 4569999999999999999999999 7778999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          319 HMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      +.++....++.+...+ -++.|++.+...+.....+.|..|+++|+++.+.......++..++|.+.+.+.+..
T Consensus        81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  154 (382)
T PRK10091         81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF  154 (382)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc
Confidence            9998888887766655 455677777777888888999999999999999999999999999999999887753

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.24  E-value=1.1e-10  Score=109.74  Aligned_cols=170  Identities=12%  Similarity=0.010  Sum_probs=108.5

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc--CCchhhh-H
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY--GRKALLT-V   83 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~--Grk~~~~-~   83 (396)
                      ++...+..++...........+|.++.+.       .+.+..+.++....+.++..++.++.|+++||+  |||+... .
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-------~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~  327 (452)
T PRK11273        255 LWYIAIANVFVYLLRYGILDWSPTYLKEV-------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF  327 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHH
Confidence            44445555555555555667888887652       345556778888889999999999999999999  5554322 2


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhH-HHHHHHH
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFV-CGTISAR  162 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~  162 (396)
                      ...+..++.++..+.+..+ .+...+..++.|. ...........+..|.+|+++|++++|+.+....+|.. .+|.+.+
T Consensus       328 ~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g  405 (452)
T PRK11273        328 FMTLVTIATIVYWLNPAGN-PTVDMACMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  405 (452)
T ss_pred             HHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence            2233333333322222111 4444445555555 32222233445678999999999999999887777654 4777776


Q ss_pred             Hh----hhHHHHHHHHHHHHHHHHHHH
Q 016048          163 FI----STSAAFQAATAGSIISAVYMR  185 (396)
Q Consensus       163 ~~----~~~~~f~~~~~~~~~~~~~~~  185 (396)
                      .+    +|+..|++.++.+++..+...
T Consensus       406 ~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        406 YTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            55    788999888877776655543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=5.4e-10  Score=99.50  Aligned_cols=174  Identities=13%  Similarity=0.100  Sum_probs=137.3

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      +++.++..+..+++...+.....+++.++++|.       .+.+....+++.-.+.++..+|+.+.|+++|| +.|+.+.
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-------~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~  280 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-------AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALI  280 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-------cCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHH
Confidence            345677788889999999999998888887763       35666789999999999999999999999999 9999999


Q ss_pred             HHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                      ....+.++..+...+..+.  .+..++.-++.|+ +...........+++ ..+|+++.+.++.....++|..+|..+++
T Consensus       281 ~~~~l~a~~~l~l~~~~~~--~~~~~~~~~~wg~-a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG  356 (394)
T COG2814         281 AALLLLALALLALTFTGAS--PALALALLFLWGF-AFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGG  356 (394)
T ss_pred             HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHH-HhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888887777776665552  5666666777787 655555555566666 33689999999999999999999999988


Q ss_pred             Hh----hhHHHHHHHHHHHHHHHHHHHHhc
Q 016048          163 FI----STSAAFQAATAGSIISAVYMRIFL  188 (396)
Q Consensus       163 ~~----~~~~~f~~~~~~~~~~~~~~~~~~  188 (396)
                      ..    ++....++.+++.++..++.....
T Consensus       357 ~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         357 LVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            76    677788888888777766654433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.24  E-value=1.5e-10  Score=106.40  Aligned_cols=162  Identities=10%  Similarity=0.140  Sum_probs=124.1

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      .++...+..++...........+|.+.+|        .+.+..+.|...+...++..+..++.|++.||+|+|+.+..+.
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~  277 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQA--------AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSA  277 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            34444555555555555556666777543        3555667889989999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHH-HhhhhhhHHHHHHHHHh
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFS-GIVSGAFVCGTISARFI  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~~  164 (396)
                      +..+++.++.+..++   .+.+++..++.|+ +.+...+....++.+. +++++++..+..+ ...++|..+||.+++.+
T Consensus       278 ~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l  352 (382)
T PRK11128        278 ICGVVRWGLMGSTTA---LPWLIVIQILHCG-TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL  352 (382)
T ss_pred             HHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888888888   8888999999999 8888888889998887 5667788888876 55677888899998887


Q ss_pred             hhH---HHHHHHHHHHHHH
Q 016048          165 STS---AAFQAATAGSIIS  180 (396)
Q Consensus       165 ~~~---~~f~~~~~~~~~~  180 (396)
                      -.+   ..|+..+++.++.
T Consensus       353 ~~~~g~~~~~~~~~~~~~~  371 (382)
T PRK11128        353 YQHLGAGVFWVMALVALPA  371 (382)
T ss_pred             HHhccHHHHHHHHHHHHHH
Confidence            322   3555555555443

>TIGR00897 2A0118 polyol permease family

Probab=99.23  E-value=2.6e-10  Score=105.52  Aligned_cols=152  Identities=18%  Similarity=0.130  Sum_probs=118.7

Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC  317 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  317 (396)
                      +|.+....++.++..........+++.+.++ +|+++.+.+...+...+...+++ ++.|++.||+|||+.+..+..+..
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~-~~~g~l~dr~g~k~~l~~~~~~~~   89 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISA-WISGVVAEIIGPLKTMMIGLLLWC   89 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHH
Confidence            4566667777777777777677788888855 69999999999999999999999 777899999999999999988888


Q ss_pred             HHHHHHHH---h-hhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHH-Hhhhhhhhhhhhcc
Q 016048          318 VHMFLYSV---A-WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFAN-LVSPLAFSPLTGDC  391 (396)
Q Consensus       318 i~~~~~~~---~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~  391 (396)
                      ++.++...   . .+.+.... ..+.+++.+...+...+.+.+.+|+++|++++|+.+....+|. .++|.+.+.+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~  169 (402)
T TIGR00897        90 VGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF  169 (402)
T ss_pred             HHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            87654422   1 22333222 3344666666667777888899999999999999999999986 58899888887654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.22  E-value=2e-10  Score=109.03  Aligned_cols=146  Identities=13%  Similarity=0.015  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY  323 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  323 (396)
                      ..+..+.............|.+.+ .+|.++.+.++..+...++..++. +..|++.||+|||+.+..+..+..++.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   84 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAG-DLGSSLSQVQWVITSYMLANAISI-PLTGWLAKRFGTRRLFLISTFAFTLGSLLC   84 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhhhhHHHHHHHHHHHHHH-HhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            334444444444555555666654 469999999999999999999999 777899999999999999999999998888


Q ss_pred             HHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ...++.+.... .++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.|.+.++.
T Consensus        85 ~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  153 (485)
T TIGR00711        85 GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY  153 (485)
T ss_pred             hCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc
Confidence            87776665554 455578888888999999999999999999999999999999999999999998754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.22  E-value=4.8e-10  Score=105.84  Aligned_cols=122  Identities=14%  Similarity=0.107  Sum_probs=96.6

Q ss_pred             HhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhh
Q 016048          265 YLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSV  343 (396)
Q Consensus       265 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~  343 (396)
                      .+.+.+|++..+.+...+...++..+++ ++.|++.||+|||+++..+.+..+++.++.++..+.+...+ .++.|++.+
T Consensus        61 ~l~~~~gls~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~  139 (476)
T PLN00028         61 IIRDNLNLTKSDIGNAGIASVSGSIFSR-LAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLA  139 (476)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4456679999999998888888888888 77789999999999999988888888887777766555444 344565555


Q ss_pred             hhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  388 (396)
                      .. .....++.|.+|+++||++.|+.+...++|..+++.+.+.+.
T Consensus       140 ~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~  183 (476)
T PLN00028        140 TF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF  183 (476)
T ss_pred             hh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 334567889999999999999999888888888877776554

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.22  E-value=2.3e-09  Score=101.54  Aligned_cols=170  Identities=12%  Similarity=0.104  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHH-HHhHHHHhhhhcccccccccCCchhhhHHHHHh
Q 016048           10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQA-IIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS   88 (396)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s-~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~   88 (396)
                      +....++............+.+..+       +.+.+..+.|+... ...++.+++.++.|+++||+|||+.+.++.++.
T Consensus       227 ~ll~~~l~~~~~~~~~~~~~~~l~~-------~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~  299 (491)
T PRK11010        227 ILLLIVLYKLGDAFAMSLTTTFLIR-------GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ  299 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3333344444433333444555433       34677788899874 556899999999999999999999887766655


Q ss_pred             HHHHHHH---Hhc-cCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           89 IIPLAIL---AYS-RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        89 ~~~~~~~---~~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      +++.+..   +.. ++   .+.+.+.-++..+ +.+...+...++..+..+++.+++..++.+...++|..+++.+++.+
T Consensus       300 ~l~~l~~~~l~~~~~~---~~~l~~~~~l~~~-~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l  375 (491)
T PRK11010        300 GVSNAGYWLLSITDKN---LYSMGAAVFFENL-CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWF  375 (491)
T ss_pred             HHHHHHHHHHHhcccc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544322   333 23   4445555566555 44555566788899999999999999999999999988777777654


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016048          165 ----STSAAFQAATAGSIISAVYMRIFLPES  191 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~  191 (396)
                          ||+..|.+..+++++..+.. ..++++
T Consensus       376 ~~~~G~~~~f~~~~~~~l~~l~~~-~~~~~~  405 (491)
T PRK11010        376 VEAHGWPTFYLFSVAAAVPGLLLL-LVCRQT  405 (491)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHH-HHHHhc
Confidence                78888988888887766555 344544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.22  E-value=2.4e-10  Score=105.52  Aligned_cols=168  Identities=11%  Similarity=0.076  Sum_probs=124.9

Q ss_pred             HHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhH
Q 016048           10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSI   89 (396)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~   89 (396)
                      .....+.............|.+..+...    +.+.+..+.|+..++..+...++.+..|++.||+|||+.+.++.++.+
T Consensus       220 ~~l~~~~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~  295 (396)
T TIGR00882       220 FVLYVVGVACVYDVFDQQFANFFTSFFA----TPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            3333333333333333345666665431    123444567888999999999999999999999999999999999888


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHH-HHHhhhhhhHHHHHHHHHh----
Q 016048           90 IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGI-FSGIVSGAFVCGTISARFI----  164 (396)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~~----  164 (396)
                      +...+...+++   .+.+++.+++.|+ +..........+..+..|++.++...+. .+....+|..+++.+++.+    
T Consensus       296 l~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~  371 (396)
T TIGR00882       296 VRIIGSSFATT---ALEVVILKMLHAF-EVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI  371 (396)
T ss_pred             HHHHHHHhcCC---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence            88888788888   7888889999998 7666555666778888888888776665 5678889999998888775    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 016048          165 STSAAFQAATAGSIISAVYMR  185 (396)
Q Consensus       165 ~~~~~f~~~~~~~~~~~~~~~  185 (396)
                      |++..|.+.+++.++..++..
T Consensus       372 G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       372 GFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH
Confidence            778999998888777666543

>PRK11043 putative transporter; Provisional

Probab=99.21  E-value=5e-10  Score=103.62  Aligned_cols=140  Identities=11%  Similarity=0.048  Sum_probs=112.7

Q ss_pred             HHHhhhhhhhhHHHH--hhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh
Q 016048          251 SNLADAGLQGSMMYY--LKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS  328 (396)
Q Consensus       251 ~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  328 (396)
                      ....+.....+.|.+  +++++|.++.+.+...+...++..+++ +..|++.||+|||+.+..+..+..++.++....++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   93 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQ-LLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES   93 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence            333444455555654  556779999999999999999999999 77789999999999999998888888887777766


Q ss_pred             hhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          329 SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .+.... .++.+++.+...+...+.+.|.+|++++++..+..+....++..++|.+.+.+.++.
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  157 (401)
T PRK11043         94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF  157 (401)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            555444 344566666666777888999999999999999999889999999999999988764

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.21  E-value=4.2e-10  Score=105.01  Aligned_cols=145  Identities=14%  Similarity=0.078  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY  323 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  323 (396)
                      ..+..+.............| .+++++|.++.+.+...+...++..+++ ++.|++.||+|||+++..+....+++.+..
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~l~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~  100 (426)
T PRK12307         23 AWLGYVFDGFDFMLIFYIMY-LIKADLGLTDMEGAFLATAAFIGRPFGG-ALFGLLADKFGRKPLMMWSIVAYSVGTGLS  100 (426)
T ss_pred             HHHHHHHHHhHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333 4556679999999999999999999999 777899999999999999999999998888


Q ss_pred             HHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ...++.+.... -++.|++.+..++....++.|.+|+++|+++.++......+|..++|.+.+.+.+.
T Consensus       101 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~  168 (426)
T PRK12307        101 GLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA  168 (426)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence            88777665555 45668888888999999999999999999999999999999999999888877664

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.20  E-value=1.6e-10  Score=101.92  Aligned_cols=177  Identities=15%  Similarity=0.206  Sum_probs=141.8

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      +++++....+..++..=+.+.+...-..+.       .++++++..+..++.....+..+++++++|++.||+|.|+++.
T Consensus       250 ~~~~i~~FLiA~~~~~DGv~til~~~~~fg-------~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~  322 (438)
T COG2270         250 GRKNLVLFLIARFFYIDGVNTILAMGGVFG-------AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLM  322 (438)
T ss_pred             cccchHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeh
Confidence            344666666666666666666655555563       4478888999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                      .+.++..+.++..-+...   ...+.++-.+.|. ..|..+....++.++..|+++-++.+|+++...-.+..+||.+-+
T Consensus       323 ~~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~-s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~  398 (438)
T COG2270         323 IGLVILSIAALYLIFLEG---ELDFWILGLLVGT-SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVA  398 (438)
T ss_pred             HHHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHH
Confidence            999999888887777766   5566677888998 899999999999999999999999999999999999999999888


Q ss_pred             Hh-----hhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016048          163 FI-----STSAAFQAATAGSIISAVYMRIFLPES  191 (396)
Q Consensus       163 ~~-----~~~~~f~~~~~~~~~~~~~~~~~~~e~  191 (396)
                      .+     +-|..+....++..+..+ ....+|++
T Consensus       399 v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~  431 (438)
T COG2270         399 VITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVP  431 (438)
T ss_pred             HHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCC
Confidence            76     347666666665555444 33556655

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.20  E-value=4.6e-10  Score=106.62  Aligned_cols=149  Identities=14%  Similarity=0.060  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHH
Q 016048          241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHM  320 (396)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~  320 (396)
                      +...++..++...-....+..+|.+..+ +|.+..+.++..+.+.++..... +..|+++||+|||+.+..+..+..++.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~-~~~G~l~D~~Grk~~l~~~~~~~~~~~   85 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMV-LPMGALGDRIGFKRLLMLGGTLFGLAS   85 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3344445555555555666667777654 69999999999999999988888 677899999999999999999999999


Q ss_pred             HHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhcc-CCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          321 FLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQV-ASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ++.+..++.+..++ -.+.|++.+...|.....+.+.+ |+++|++++|+......+|..++|.+.|.+.++.
T Consensus        86 ~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~  158 (495)
T PRK14995         86 LAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF  158 (495)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            99888877776665 45668888888888777776665 6789999999999999999999999999998864

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.20  E-value=4.5e-10  Score=104.10  Aligned_cols=146  Identities=14%  Similarity=0.076  Sum_probs=104.6

Q ss_pred             chhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhcc--CchhHHHHHHHHHHHhhhccc
Q 016048           43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR--SRNFFYAYYVLRTLTAMVCEG  120 (396)
Q Consensus        43 ~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~  120 (396)
                      .+.+..+.|+......++..++.++.|+++||+|+|+.+..+.++..++..+..+.+  .....+.+++..++.|+ +.+
T Consensus       246 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-g~~  324 (406)
T PRK15402        246 EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF-GIG  324 (406)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HHH
Confidence            355667788887778888999999999999999999999998888777777666532  11125667788888998 777


Q ss_pred             hhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCC
Q 016048          121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       121 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e  190 (396)
                      ...+......... ++++|+++.+..+....+|..+|+.+++.+    ++....+...+..++...+...+.++
T Consensus       325 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK15402        325 LANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLKD  397 (406)
T ss_pred             HHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            7666666655444 458999999999999999999999999876    33333333333343333333344443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.19  E-value=5.4e-10  Score=103.08  Aligned_cols=150  Identities=11%  Similarity=0.009  Sum_probs=119.0

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      |.+.......+............+|.+.++ +|.++.+.++..+...++..++. +..|++.||+|||+.+..+.....+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~g~r~~l~~~~~~~~i   80 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAM-LFAGKIADRSGRKPVAIPGAALFII   80 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhHhHHHHHhCChHHHHHHHHHHHH
Confidence            334444444444555545555667776655 69999999999999999999998 7778999999999999999988888


Q ss_pred             HHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          319 HMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      +.......++.+.... .++.+.+.+...+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~  153 (392)
T PRK10473         81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK  153 (392)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8888877666554443 44557777777888999999999999999999999999999999999998887654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.19  E-value=4.2e-08  Score=90.57  Aligned_cols=290  Identities=12%  Similarity=0.144  Sum_probs=175.8

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhh-hhcccccccccCCchhhh
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVM-MPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~-~~~~G~l~Dr~Grk~~~~   82 (396)
                      .+.+....+..|+..+++++..|.=..+..+.       .+.+.....++-+...+...+. .++.+++++|++|++++-
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~-------~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~   78 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRDTKDTLVVTA-------KGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFY   78 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhheeecc-------cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHH
Confidence            34556667777777777777776633332211       1122245677777776766666 889999999999999999


Q ss_pred             HHHHHhHHHHHHHHhc--cCch--------------------------hHHHHHHHHHHHhhhccchhhH-HHHHHHhcC
Q 016048           83 VPITLSIIPLAILAYS--RSRN--------------------------FFYAYYVLRTLTAMVCEGSIHC-LSLAYVADN  133 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~--~~~~--------------------------~~~~l~~~r~l~G~~~~~~~~~-~~~~~i~~~  133 (396)
                      .....+.....+.++.  ++..                          ..|...+..+...+ -+....+ .-..+.+|.
T Consensus        79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el-w~~~vvS~lFW~fandi  157 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL-WGSVVLSLLFWGFANQI  157 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            8887777777776654  1100                          02333344445555 2233333 678899999


Q ss_pred             CCcccchhHHHHHHHhhhhhhHHHHHHHHHhh------------hH----HHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 016048          134 VPPGRRASVFGIFSGIVSGAFVCGTISARFIS------------TS----AAFQAATAGSIISAVYMRIFLPESVRDEDL  197 (396)
Q Consensus       134 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~------------~~----~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~  197 (396)
                      ++.+|-.|..+++..+.++|.++++.+..++.            |.    ..+.+..+...+...+. ..+.+....+++
T Consensus       158 ~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~-~~l~~~~~~~~~  236 (472)
T TIGR00769       158 TTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLY-WWVNRNVLTDPR  236 (472)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccCCcc
Confidence            99999999999999999999999998877653            21    22233333333333333 333222111110


Q ss_pred             ccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccc-
Q 016048          198 YTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ-  276 (396)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-  276 (396)
                       .          .+.   ++++++++++.+..+.++.+.++|.+..+.+...+........+...-...++.+ -|+.+ 
T Consensus       237 -~----------~~~---~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~~~~~  301 (472)
T TIGR00769       237 -S----------YNP---ALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PSPNEY  301 (472)
T ss_pred             -c----------cch---hhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHH
Confidence             0          000   0111223335567788887778998888887777777666555544444454443 23222 


Q ss_pred             ---hhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHH
Q 016048          277 ---FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       277 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                         .|......++..++.+ ++.+++.+|+|-+....+.-++..+
T Consensus       302 ~~f~g~~~~~~gi~tl~~~-l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       302 SAFMGDFSTWTGVVSVTMM-LLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence               3455556677777777 4448999999887665554444333

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00898 2A0119 cation transport protein

Probab=99.18  E-value=3e-10  Score=108.42  Aligned_cols=136  Identities=18%  Similarity=0.187  Sum_probs=105.8

Q ss_pred             HHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCC
Q 016048           56 IIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP  135 (396)
Q Consensus        56 ~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~  135 (396)
                      ...+..+++.++.+++.||+|||+.+..+.++.+++.++..+.++.. .+...+.-++.++ +.+...+....+..|.+|
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKF-GITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-HHHHHHHHHHHHhccccc
Confidence            34566677888899999999999999999999999888888776521 2444455556665 666677888999999999


Q ss_pred             cccchhHHHHHHHhhhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 016048          136 PGRRASVFGIFSGIVSGAFVCGTISARFI--STSAAFQAATAGSIISAVYMRIFLPESVRD  194 (396)
Q Consensus       136 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  194 (396)
                      ++.|+.++++.+....+|.+++|.+.+..  ++..++.+.++..++..+.. +++||+..+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~  500 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILT-LFLPETKGV  500 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCC
Confidence            99999999999999999999999988832  34567777777666665554 678887543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.17  E-value=7.1e-10  Score=102.35  Aligned_cols=134  Identities=15%  Similarity=0.073  Sum_probs=108.6

Q ss_pred             hhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-
Q 016048          256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-  334 (396)
Q Consensus       256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-  334 (396)
                      ......+|.+. +.+|.|+.+.+...+...+...++. +..|+++||+|||+.+..+.....++.+.....++.+.... 
T Consensus        25 ~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  102 (394)
T PRK11652         25 TIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQ-LFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAA  102 (394)
T ss_pred             HHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            33334455555 5569999999999999999999999 77789999999999999999888888887777666554444 


Q ss_pred             HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          335 AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .++.+++.+...+....+..|.+++++++++.+..+....++..++|.+.+.+.+..
T Consensus       103 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  159 (394)
T PRK11652        103 SAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF  159 (394)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            444566666667777888889999999999999999999999999999999887753

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.17  E-value=4.7e-10  Score=105.04  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=111.3

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +.++.++...++...+........+.+..+..       + +..+.++..++..++.+++.+++++++||+|||+.+..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~  293 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVL-------G-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGG  293 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeec-------C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            34444555555555555554444444433321       1 223566777788999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCC-------cccchhHHHHHHHhhhhhhHHH
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-------PGRRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g  157 (396)
                      ..+.+++.+...+.++  ..+.+++..++.|+ +.+...+...++++|..|       ++++|..+++.+....+|..++
T Consensus       294 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg  370 (437)
T TIGR00792       294 ILLMVLGYLIFFFAGS--NLPLILVLIILAGF-GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA  370 (437)
T ss_pred             HHHHHHHHHHHHHcch--hHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence            9888888877766542  15667778888888 888888889999999875       4567999999999999999999


Q ss_pred             HHHHHHh
Q 016048          158 TISARFI  164 (396)
Q Consensus       158 ~~~~~~~  164 (396)
                      +.+.+.+
T Consensus       371 ~~i~g~l  377 (437)
T TIGR00792       371 GFLVGLI  377 (437)
T ss_pred             HHHHHHH
Confidence            8888765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.16  E-value=3.4e-10  Score=118.86  Aligned_cols=162  Identities=14%  Similarity=0.074  Sum_probs=125.8

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHH-HHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIY-LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~-~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      ++...+..++...........+|.+..+.       ++.+.. +.|++.+...++.++++++.|+++||+++|+.+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~  306 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEV-------LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA  306 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence            33344444444444455556677776553       345555 7899999999999999999999999999999999988


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-  164 (396)
                      ++.+++.++..+..+   .+.+++..++.|+ +.+...+...+++.+..|+++|+++++..+....+|.++++.+++.+ 
T Consensus       307 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        307 LGLALSLFLLPTAPS---LASVLVLFFLFGF-SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888777   7888888999998 88888888899999999999999999999999999988887777654 


Q ss_pred             ----hhHHHHHHHHHHHHH
Q 016048          165 ----STSAAFQAATAGSII  179 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~  179 (396)
                          ++...|++.+.+.++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        383 GLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HhccCHHHHHHHHHHHHHH
Confidence                234455554444433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.16  E-value=2e-09  Score=97.79  Aligned_cols=132  Identities=11%  Similarity=0.073  Sum_probs=115.8

Q ss_pred             hhhhhhHHHHhhhhccccccc-hhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 016048          256 AGLQGSMMYYLKAKFHFNKNQ-FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA  334 (396)
Q Consensus       256 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  334 (396)
                      -....+...++.+.+|++..+ .|.+......+..+.. +.+|++.||+|.|+++..+.+..++..+++++..+...+.+
T Consensus        42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~q-Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVL-VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666777788999999 9999999999999999 77789999999999999999999999999998877655554


Q ss_pred             -HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          335 -AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       335 -~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                       -+++|++.+... ....++.+.+|+++|+++.|+.+....+|.++++++.+.+..
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s  175 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT  175 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             567789998888 999999999999999999999999999999999999998543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.16  E-value=5.9e-10  Score=102.75  Aligned_cols=165  Identities=7%  Similarity=-0.041  Sum_probs=116.3

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhH-HHHhhhhcccccccccCCchhhhHH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGL-GTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      .++......++...+........+.+..|        .+.+..+.|++...... ...++.++.|++.||+|+|+.+..+
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~  280 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD--------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILG  280 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh--------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34445555566666565666666777443        46777888998887764 6667789999999999999999887


Q ss_pred             HHHhHHHHHHHHh------ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCc-ccchhHHHHHHHhhhhhhHHH
Q 016048           85 ITLSIIPLAILAY------SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP-GRRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        85 ~~~~~~~~~~~~~------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g  157 (396)
                      ..+.++..+....      .++   .+.+.....+.++ +.+...+...+.+.+..++ +++++.++..+...++|..+|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g  356 (390)
T TIGR02718       281 VGLAGSLALLWFAQAAFWLAPG---IAVAWSCSAFGSL-ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIA  356 (390)
T ss_pred             HHHHHHHHHHHHHHHHcccCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHH
Confidence            7665333332221      122   3444455556666 5666667777787777776 889999999999999999999


Q ss_pred             HHHHHHh----hhHHHHHHHHHHHHHHHH
Q 016048          158 TISARFI----STSAAFQAATAGSIISAV  182 (396)
Q Consensus       158 ~~~~~~~----~~~~~f~~~~~~~~~~~~  182 (396)
                      |.+++.+    +++..|...+++.++..+
T Consensus       357 ~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       357 SSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            9999875    667788777766655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10133 L-fucose transporter; Provisional

Probab=99.15  E-value=1.4e-09  Score=101.49  Aligned_cols=145  Identities=10%  Similarity=-0.022  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHH
Q 016048          242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF  321 (396)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~  321 (396)
                      ..+.+..+...+.........|.+ ++.+|.|+.+.+...+...++..+++ +..|++.||+|||+++..+..+..++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~-~~~g~l~dr~G~r~~l~~g~~~~~~~~~  106 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            444455555566666666667776 77789999999999999999999999 6778999999999999999999999987


Q ss_pred             HHH---HhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          322 LYS---VAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       322 ~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  388 (396)
                      +..   ..++.+.... .++.|++.+...+..+.++.|..|+++|+...++.+....+|..++|.+++.+.
T Consensus       107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            753   3344444433 566688889999999999988877666667899999999999999999887654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.15  E-value=4.8e-10  Score=104.93  Aligned_cols=175  Identities=11%  Similarity=0.000  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHh
Q 016048            9 HLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLS   88 (396)
Q Consensus         9 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~   88 (396)
                      .+.+..++...........+|.+..+       +.+.+..+.++..+.+.++..++.++.|+++||+++|+....+....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~p~~l~~-------~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~  327 (438)
T TIGR00712       255 YIAIANVFVYLLRYGVLDWSPTYLKE-------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFM  327 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHH-------ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHH
Confidence            33344444444444555677888665       23556667888889999999999999999999997544323333222


Q ss_pred             H---HHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhh-hHHHHHHHHHh
Q 016048           89 I---IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGA-FVCGTISARFI  164 (396)
Q Consensus        89 ~---~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~~~~~~  164 (396)
                      .   ++.+.....+..+ .+...+..+..|. +.............|.+|+++|+++.|+.+....+| ..+||.+.+.+
T Consensus       328 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l  405 (438)
T TIGR00712       328 TLVTIAVIVYWMNPAGN-PLVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  405 (438)
T ss_pred             HHHHHHHHHHHhcCCCc-hHHHHHHHHHHHH-HHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHH
Confidence            1   2222222222111 3333344445554 322222222356789999999999999998776665 56788777765


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016048          165 ----STSAAFQAATAGSIISAVYMRIFLPESV  192 (396)
Q Consensus       165 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~  192 (396)
                          +|...|++..+..++..+...+..||.+
T Consensus       406 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       406 VDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                6788888888877777777777777753

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.14  E-value=2.7e-10  Score=100.48  Aligned_cols=142  Identities=15%  Similarity=0.127  Sum_probs=119.4

Q ss_pred             HHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh
Q 016048          248 AFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW  327 (396)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~  327 (396)
                      +....+.--.++.-.| ++.+..++|..+.|.+.+...+.--++. ++.|.++||.+.|+.+..++++.++..+++++.+
T Consensus        38 Ya~fYl~RknF~~a~p-~l~e~~~lsk~~lG~i~s~f~i~YG~sK-f~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~  115 (448)
T COG2271          38 YAAFYLTRKNFNLAMP-ALIEDGGLSKTQLGILGSAFSITYGVSK-FVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP  115 (448)
T ss_pred             HHHHHHHHHhHhhccH-HHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh
Confidence            3333333333333334 4455558999999999999999999999 8889999999999999999999999999999998


Q ss_pred             hhhHHHHH-HHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhh--hhhhhcc
Q 016048          328 SSWVPYAA-AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAF--SPLTGDC  391 (396)
Q Consensus       328 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~--g~l~~~~  391 (396)
                      +.+...+. .+-+.+.+...|.....+.+-+|+++||+..++.|...++|+.+.|.+.  +.+.+++
T Consensus       116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            77766664 4458899999999999999999999999999999999999999999999  7777653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.14  E-value=1.6e-09  Score=100.19  Aligned_cols=147  Identities=10%  Similarity=0.014  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHH
Q 016048          242 SQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMF  321 (396)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~  321 (396)
                      ...+...+...+........+|.+ ++.+|.++.+.+.+.+...++..++. +..+++.||+|||+.+..+..+.+++.+
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~-~~~g~l~~r~G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMA-IPAAIFMKKLSYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            334444445555444444555555 67789999999999999999999999 6678999999999999999999999887


Q ss_pred             HHHHhh---hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          322 LYSVAW---SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       322 ~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ++....   +.+.... .++.+.+.+...+....++.+..|+++|++..++.+....+|..++|.+.+.+...
T Consensus        84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885        84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            765432   3333333 55668888999999999999999999999999999999999999999999988644

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.13  E-value=8.6e-11  Score=106.15  Aligned_cols=155  Identities=14%  Similarity=0.148  Sum_probs=124.6

Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFG  316 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  316 (396)
                      .+++....++...........+.+++--+++|. +-.+...|......-.+.++.- +...++.+|+|+.+++..++.+.
T Consensus       369 ~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~~~gEI~~~-ffs~klI~kiGHv~v~~lgLa~~  446 (618)
T KOG3762|consen  369 ASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALCHAGEILFY-FFSFKLIEKIGHVNVMYLGLACN  446 (618)
T ss_pred             cCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhhccchHHHH-HHHHHHHHHhcccceeeehhhHH
Confidence            345555555555556665566666666666665 6666666777777777777777 67789999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHH-HHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHH-HHHHhhhhhhhhhhhcccC
Q 016048          317 CVHMFLYSVAWSSWVPYAA-AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICS-FANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       317 ~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~~~~  393 (396)
                      .+-++.+....++|..+.+ ++-++..+..+....++++...||+.+.+++++...... +|..+|.+++|.+.+.++.
T Consensus       447 ~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~  525 (618)
T KOG3762|consen  447 VGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA  525 (618)
T ss_pred             HHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehh
Confidence            9999999999999887775 445888999999999999999999999999999987764 9999999999999887654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.12  E-value=9.2e-10  Score=100.97  Aligned_cols=132  Identities=10%  Similarity=0.045  Sum_probs=113.0

Q ss_pred             hhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HH
Q 016048          258 LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AA  336 (396)
Q Consensus       258 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~  336 (396)
                      ....+|.+.++ +|+++.+.+...+...++..++. +..|++.||+|||+.+..+..+..++.......++.+.... .+
T Consensus        10 ~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   87 (377)
T PRK11102         10 YLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQ-LFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRF   87 (377)
T ss_pred             HhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            34566777665 69999999999999999999999 77789999999999999999999999888887766555444 45


Q ss_pred             HHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          337 VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      +.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus        88 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  142 (377)
T PRK11102         88 LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF  142 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5577777788889999999999999999999999999999999999999988754

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.11  E-value=1.7e-09  Score=98.83  Aligned_cols=177  Identities=16%  Similarity=0.198  Sum_probs=137.9

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      ++++...++..++...+.+......+.|.+|..       +.+....|.+.++..++.++.-...+++..|+|.|+++.+
T Consensus       206 ~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g-------g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~  278 (400)
T PF03825_consen  206 NPRFLVFLLAAFLIGISHAAYYTFFSIYLQELG-------GYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLL  278 (400)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            344556667778888888888888888866631       1344566777788888899999999999999999999999


Q ss_pred             HHHHhHHHHHHHHhc-cCchhHHHH----HHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHH-hhhhhhHHH
Q 016048           84 PITLSIIPLAILAYS-RSRNFFYAY----YVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSG-IVSGAFVCG  157 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~-~~~~~~~~l----~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g  157 (396)
                      +.+..++=..+.+.. ++   .+..    +....++|+ ..+..+.....++.+..|++.|+++.+++.. ..++|..+|
T Consensus       279 a~~~~~vR~~l~a~~~~~---~~~~~~~~~l~q~lhG~-tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG  354 (400)
T PF03825_consen  279 ALVAYAVRWLLYAYFSDP---WPFIVALQLLGQLLHGL-TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG  354 (400)
T ss_pred             HHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence            999999998888887 44   2332    334567999 8899999999999999999999999999876 568999999


Q ss_pred             HHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016048          158 TISARFI----------STSAAFQAATAGSIISAVYMRIFLPES  191 (396)
Q Consensus       158 ~~~~~~~----------~~~~~f~~~~~~~~~~~~~~~~~~~e~  191 (396)
                      ..++|++          .|...+.+.+++.++..++.+++.||+
T Consensus       355 ~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  355 SLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            9999886          233455666666666666665666654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.11  E-value=1.3e-09  Score=101.92  Aligned_cols=163  Identities=15%  Similarity=0.121  Sum_probs=97.7

Q ss_pred             HhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHH-
Q 016048           18 CFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA-   96 (396)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~-   96 (396)
                      ..........+|.++.+.       .+.+..+.+...++..+...+++++.|+++||+|||+.+....++.++...... 
T Consensus       256 ~~~~~~~~~~lp~~l~~~-------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~  328 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNT-------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILS  328 (432)
T ss_pred             HHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            334444556678776552       345556778888888888889999999999999999988776655433332111 


Q ss_pred             -hccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhh-hhHHHHHHHHHh---h-hHHHH
Q 016048           97 -YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSG-AFVCGTISARFI---S-TSAAF  170 (396)
Q Consensus        97 -~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~~---~-~~~~f  170 (396)
                       ...... ....+..-.+.+. ..+...+....+++|++|+|.|+.++|+.+...++ .....|.+.+.+   + |...+
T Consensus       329 ~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~  406 (432)
T PRK10406        329 ALQNVSS-PYAAFGLVMCALL-IVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFF  406 (432)
T ss_pred             HHHcCCc-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHH
Confidence             111101 2222222222222 23334455678899999999999999998765443 233466666654   3 44455


Q ss_pred             HHHHHHHHHHHHHHHHhcCC
Q 016048          171 QAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~e  190 (396)
                      +..++..++..+.. +++++
T Consensus       407 ~~~~~~~~i~~~~~-~~l~~  425 (432)
T PRK10406        407 WYVTLMAVVAFLVS-LMLHR  425 (432)
T ss_pred             HHHHHHHHHHHHHH-HHhhh
Confidence            55555555544444 34443

>PRK09848 glucuronide transporter; Provisional

Probab=99.09  E-value=8.9e-10  Score=103.47  Aligned_cols=152  Identities=16%  Similarity=0.116  Sum_probs=111.8

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      ++.+....+..++...+........|.+..+.       ++.+....++......++.+++.+++++++||+|+|+.+..
T Consensus       227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~  299 (448)
T PRK09848        227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYV-------LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI  299 (448)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhheeeEeee-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            34455555556666665555555556664442       33444454555555567788899999999999999999999


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcc-------cchhHHHHHHHhhhhhhHH
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG-------RRASVFGIFSGIVSGAFVC  156 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~  156 (396)
                      +.++..++.++..+.+.. +++.+++..++.|+ +.+...+...++.+|..|++       ++|...+..+....+|..+
T Consensus       300 g~~~~~i~~~~~~~~~~~-~~~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai  377 (448)
T PRK09848        300 GALLGTCGYLLFFWVSVW-SLPVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI  377 (448)
T ss_pred             HHHHHHHHHHHHHHcCch-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence            999888888777765421 26667777888998 88888899999999988754       3588889999999999999


Q ss_pred             HHHHHHHh
Q 016048          157 GTISARFI  164 (396)
Q Consensus       157 g~~~~~~~  164 (396)
                      |+.+.+.+
T Consensus       378 g~~i~g~~  385 (448)
T PRK09848        378 GGSIPAFI  385 (448)
T ss_pred             HHHHHHHH
Confidence            88877653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.08  E-value=1.1e-09  Score=114.63  Aligned_cols=164  Identities=15%  Similarity=0.062  Sum_probs=125.2

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +.++...+..++..+..+.....+|.|..+.       ++.+..+.|++.+.+.++.++++++.|+++||.++++.+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~  297 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKET-------LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIG  297 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHH
Confidence            4455555555555555556666778887663       456667899999999999999999999999998888777766


Q ss_pred             HHHhHHHHHHHHhc--------------------cCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHH
Q 016048           85 ITLSIIPLAILAYS--------------------RSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFG  144 (396)
Q Consensus        85 ~~~~~~~~~~~~~~--------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~  144 (396)
                      .++.+++.+...+.                    ++   .+.+++..++.|+ +.+...+...+++.+.+|+++||+++|
T Consensus       298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~G~v~g  373 (1140)
T PRK06814        298 ALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH---GWRILIDLFGLAA-AGGLYIVPLFAALQAWANPAHRARVIA  373 (1140)
T ss_pred             HHHHHHHHHHHHhcccccccccccccchhhhhcccc---cHHHHHHHHHHHH-HHHHhHHHHHHHHHhhCCcccceeeeH
Confidence            66666655544443                    44   6778888899999 888888889999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHh-----hhHHHHHHHHHHHHH
Q 016048          145 IFSGIVSGAFVCGTISARFI-----STSAAFQAATAGSII  179 (396)
Q Consensus       145 ~~~~~~~~g~~~g~~~~~~~-----~~~~~f~~~~~~~~~  179 (396)
                      ..+....+|..+++++.+.+     +....+++.+++.++
T Consensus       374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            99999999999999888766     334455544444333

>PRK15075 citrate-proton symporter; Provisional

Probab=99.08  E-value=1.6e-09  Score=101.36  Aligned_cols=139  Identities=15%  Similarity=0.178  Sum_probs=92.1

Q ss_pred             HHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHH-HH
Q 016048           17 HCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLA-IL   95 (396)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~-~~   95 (396)
                      ............|.+.++.       .+.+..+.++....+.++..++.++.|+++||+|||+.+..+.++..+... ..
T Consensus       250 ~~~~~~~~~~~~p~~l~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTV-------LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            3344445556678776552       345556778888888999999999999999999999998876554433221 11


Q ss_pred             H-hccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHH-hhhhhhHHHHHHHHHh
Q 016048           96 A-YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSG-IVSGAFVCGTISARFI  164 (396)
Q Consensus        96 ~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~~  164 (396)
                      . ...+. .+....+...+.|+ +.+...+....++.|..|+++|+..+++... +..++..++|.+.+.+
T Consensus       323 ~~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        323 SWLVAAP-SFARMLAVELWLSF-LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             HHHHcCC-chHHHHHHHHHHHH-HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            1 11111 14444444555566 5556666677889999999999999998644 3334456677777654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.07  E-value=6e-10  Score=102.06  Aligned_cols=137  Identities=19%  Similarity=0.216  Sum_probs=112.3

Q ss_pred             HHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhh
Q 016048          251 SNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSW  330 (396)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  330 (396)
                      ............| ++.+.+|+++.+.+.+.+...++..++. +..|+++||+|||+.+..+..+..++.++....++.+
T Consensus         7 ~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~   84 (379)
T TIGR00881         7 YYLVRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISK-FVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLW   84 (379)
T ss_pred             HHHhHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhh-hhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHH
Confidence            3333344444455 4556679999999999999999999999 7778999999999999999999999988888877766


Q ss_pred             HHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhh-hhhhhhh
Q 016048          331 VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPL-AFSPLTG  389 (396)
Q Consensus       331 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~-~~g~l~~  389 (396)
                      ...+ .++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|. +.+.+.+
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  145 (379)
T TIGR00881        85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE  145 (379)
T ss_pred             HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh
Confidence            5555 455577788888999999999999999999999999999999999994 5554444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.06  E-value=5.1e-09  Score=94.33  Aligned_cols=166  Identities=10%  Similarity=0.049  Sum_probs=133.0

Q ss_pred             ccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccC
Q 016048           21 TSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRS  100 (396)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~  100 (396)
                      ++....-.|.|..+.    -++.+.+....|++.++..+..++...+..++.+|+|.|+.++++.++..+=.+.++++++
T Consensus       236 Y~vfdqqf~~y~~~~----f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~  311 (412)
T PF01306_consen  236 YDVFDQQFPIYFASF----FQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN  311 (412)
T ss_dssp             HHHHHHHHHHHHHHT----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S
T ss_pred             HHHHHHHHHHHHHHH----hcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc
Confidence            334333356665554    2344566778999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHH-HHhhhhhhHHHHHHHHHh----hhHHHHHHHHH
Q 016048          101 RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIF-SGIVSGAFVCGTISARFI----STSAAFQAATA  175 (396)
Q Consensus       101 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~  175 (396)
                         .+.+.+.+.+.|+ -.+........|+++.+|+|-.++...+. +...++|..+.+.++|.+    |.+..|++.+.
T Consensus       312 ---~~~i~~~klLH~~-e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~  387 (412)
T PF01306_consen  312 ---PWVISLIKLLHAL-EFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGL  387 (412)
T ss_dssp             ---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHH
Confidence               9999999999999 88899999999999999988877777764 678888888888888876    66778889998


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q 016048          176 GSIISAVYMRIFLPESVRD  194 (396)
Q Consensus       176 ~~~~~~~~~~~~~~e~~~~  194 (396)
                      +.+...++..+.+++++++
T Consensus       388 iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  388 IVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHHHheeeecCCCcc
Confidence            8888888887888765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=8.3e-08  Score=87.54  Aligned_cols=303  Identities=15%  Similarity=0.077  Sum_probs=185.7

Q ss_pred             HHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcC
Q 016048           54 QAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADN  133 (396)
Q Consensus        54 ~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~  133 (396)
                      .++-+....+..++.+.+.|+.|.|..+.++........+..-+-++    +-++..-.+.|+ |.+..+...-.+++|.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~----y~~yfssallG~-Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS----YYLYFSSALLGF-GAALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch----HHHHHHHHHhhh-hHHheecccceehhhc
Confidence            66667778888899999999999999999999999888777766654    667889999999 8898899999999999


Q ss_pred             CCcccchhHHHHHHHhhhhhhHHHHHHHHHh------------hhH-HH-------H---HHHHHHHHHHHHHHHHhcCC
Q 016048          134 VPPGRRASVFGIFSGIVSGAFVCGTISARFI------------STS-AA-------F---QAATAGSIISAVYMRIFLPE  190 (396)
Q Consensus       134 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~------------~~~-~~-------f---~~~~~~~~~~~~~~~~~~~e  190 (396)
                      .++|++.+..++.-+....+.++|..+-..+            +.+ ..       +   .+.+++.....+...-...+
T Consensus       131 st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~  210 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL  210 (461)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec
Confidence            9999999999999888888888886665443            111 11       1   11111111111101011111


Q ss_pred             CCCCcccccccccchhhhhhhhhhhhhhhhh-hccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhh
Q 016048          191 SVRDEDLYTPILSSKAEISASCEESTKKLQV-FKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK  269 (396)
Q Consensus       191 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (396)
                      +.+...                   .+.+.. ....+..+...+.+ +++++..+....+..++.........|..+.-.
T Consensus       211 p~~~~~-------------------~~~~~~~~~~~~~l~~~~~l~-~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft  270 (461)
T KOG3098|consen  211 PSKDVV-------------------NCKSSSETSFSELLKLTFKLL-KTPKMLLLFPFFFYTGLETSFWISIYPTCISFT  270 (461)
T ss_pred             Cccchh-------------------hhhhhccccHHHHHHHHHHHh-cCHhHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence            111100                   000000 11112234444445 356666555555544444343444444433222


Q ss_pred             --ccccc-cchhhHHHHHHHHHHHHHHHHHHhhhhh---hcchhHHHHHHHHHHHHHHHHHHhhh---------------
Q 016048          270 --FHFNK-NQFADLMVIAGIAGTISQLIMMPVLAPT---VGEARLLSFGLLFGCVHMFLYSVAWS---------------  328 (396)
Q Consensus       270 --~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~i~~~~~~~~~~---------------  328 (396)
                        .+.+. .-.+......+.+.+++. ...+.+.||   +|+++....+..+..+..++.....+               
T Consensus       271 ~~~~~n~~~~~ai~~~~~g~g~v~~g-~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~  349 (461)
T KOG3098|consen  271 RKLGSNTTYLIAIYSIGIGLGEVIGG-LDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLF  349 (461)
T ss_pred             hhccCcchhHHHHHHHHHhHHHHHHH-HHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCccccccc
Confidence              22222 224445555666666666 333456554   57788888887777666666544211               


Q ss_pred             ---h-hHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhh
Q 016048          329 ---S-WVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLA  383 (396)
Q Consensus       329 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~  383 (396)
                         . ...++.++.|.+-.......+.++.+.. +++|.++.++...-..+++.++-..
T Consensus       350 ~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  350 TPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             ccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence               1 1222345567777788888999999999 4888888888877777766654433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.05  E-value=4.8e-09  Score=97.28  Aligned_cols=128  Identities=14%  Similarity=0.064  Sum_probs=106.7

Q ss_pred             hHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHH
Q 016048          261 SMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFS  339 (396)
Q Consensus       261 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~  339 (396)
                      .+|. ..+.+|.+..+.+...+.+.++..+++ +..|.++||+|||+++..+..+..++.+.....++.+...+ -++.|
T Consensus        38 ~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  115 (413)
T PRK15403         38 GIIN-VVRDFNADVSLAPASVSLYLAGGMALQ-WLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQG  115 (413)
T ss_pred             CHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHH-HhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444 345679999999999999999999999 67789999999999999999999888888888777655544 45556


Q ss_pred             HhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          340 ILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ++.+...+.......|.+|+++++++.++.+....++..++|.+++.+.++
T Consensus       116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~  166 (413)
T PRK15403        116 TSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF  166 (413)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666655667778899999999999999999999999999999999988765

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.04  E-value=1.9e-09  Score=97.47  Aligned_cols=156  Identities=13%  Similarity=0.192  Sum_probs=133.9

Q ss_pred             cCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----ccccchhhHHHHHHHHHHHHHHHHHHhhhhhh-cchhHHH
Q 016048          236 KSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH----FNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLS  310 (396)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~  310 (396)
                      +++|.++.++..-+.--+++|++...+..|+....+    +|.+++..++..++...-+.. +++|+++||+ |+|+.+.
T Consensus        18 ~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~-i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          18 GQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHhcchhHHHH
Confidence            357788888888899999999999999999988887    999998888888888777777 8889999995 9999999


Q ss_pred             HHHHHHHHHHHHHHHhh--hhhHHH-HHHHHHHhhhhhhhhhhHHHhhccCCc--cchhHhhhHHHHHHHHHHhhhhhhh
Q 016048          311 FGLLFGCVHMFLYSVAW--SSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASN--EQGKAQGCISGICSFANLVSPLAFS  385 (396)
Q Consensus       311 ~~~~~~~i~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~~~g  385 (396)
                      .+.+++.++.++++...  ...... ...++.++.|..=|...+++.|.+|++  +|-.++++..+..++|+.++|.+.+
T Consensus        97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~  176 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG  176 (498)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHH
Confidence            99999999999998874  333333 356667899999999999999999876  4777899999999999999999999


Q ss_pred             hhhhccc
Q 016048          386 PLTGDCR  392 (396)
Q Consensus       386 ~l~~~~~  392 (396)
                      ++.+++.
T Consensus       177 ~~~~~~g  183 (498)
T COG3104         177 LLAINYG  183 (498)
T ss_pred             HHHHhhC
Confidence            9988764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.02  E-value=4.8e-09  Score=95.46  Aligned_cols=131  Identities=9%  Similarity=-0.108  Sum_probs=97.1

Q ss_pred             hhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HH
Q 016048          258 LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AA  336 (396)
Q Consensus       258 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~  336 (396)
                      +...+|.+. +++|+|+.+.++..+...++..+++ +..|++.||+|||+++..+......+........+.+.... -+
T Consensus        10 ~~~~lp~i~-~~~~~s~~~~g~~~s~~~~g~~i~~-~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~   87 (368)
T TIGR00903        10 FSPVLSLVA-EDIDVSKEELGLLAITYPAAFLALT-IPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL   87 (368)
T ss_pred             HHhhHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            344455554 4579999999999999999999999 66789999999998876655555444332222233333333 45


Q ss_pred             HHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          337 VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      +.|++.+. .+......+|.+|+++|+++.++.+....+|..+++.+.+.+.+..
T Consensus        88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~  141 (368)
T TIGR00903        88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG  141 (368)
T ss_pred             HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            55666664 4555566689999999999999999999999999999999987653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.01  E-value=3.5e-09  Score=93.57  Aligned_cols=135  Identities=15%  Similarity=0.084  Sum_probs=108.6

Q ss_pred             hhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhh---H
Q 016048          255 DAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSW---V  331 (396)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~---~  331 (396)
                      ......-+...+++.+|+|+.|.+++.+...+.+.+.+ +..+.+.||+|.|++...+.++..+-.+.+.+..+.+   .
T Consensus        29 VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallR-l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~  107 (417)
T COG2223          29 VWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLR-LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ  107 (417)
T ss_pred             HHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHH-HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            33444455556668899999999999999999999999 5567999999999999999999999988888876655   3


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          332 PYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .+.+-++....+..+......+++-+|+|++|.++|+.. .+++|..+...+.+.+....
T Consensus       108 ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223         108 LLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            333333333346678889999999999999999999998 88888888887777766544

>TIGR00901 2A0125 AmpG-related permease

Probab=99.01  E-value=1.1e-09  Score=99.75  Aligned_cols=136  Identities=14%  Similarity=0.108  Sum_probs=104.2

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHh-HHHHhhhhcccccccccCCchhhhHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIG-LGTLVMMPLVGNLSDKYGRKALLTVPI   85 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~G~l~Dr~Grk~~~~~~~   85 (396)
                      ++.+.+..++...........+|.+..+        .+.+..+.|.+.++.. ++..++.+++|++.||+|||+.+..+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  282 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD--------MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFG  282 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            4444555555566666666777877544        3566678888777665 577899999999999999999999888


Q ss_pred             HHhHHHHHHHHhc-cCc-------hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhh
Q 016048           86 TLSIIPLAILAYS-RSR-------NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVS  151 (396)
Q Consensus        86 ~~~~~~~~~~~~~-~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  151 (396)
                      ++.+++..+..+. .+.       .+.+.+..+.++.++ +.+...+...+++.|.+|+|+|++.+++.+...+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       283 IVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAV-TGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            8887776655543 111       126777888889998 8899999999999999999999999999887654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.01  E-value=2.4e-09  Score=101.09  Aligned_cols=150  Identities=13%  Similarity=0.133  Sum_probs=106.3

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +.+..++...++............+.+.....       + +....+++.++..++.+++.+++++++||+|+|+.+..+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~-------~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~  302 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVI-------G-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGA  302 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEEC-------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence            44555566666666666666666554533321       1 123456777777788899999999999999999999988


Q ss_pred             HHHhHHHHHHHHh---ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCC-------cccchhHHHHHHHhhhhhh
Q 016048           85 ITLSIIPLAILAY---SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-------PGRRASVFGIFSGIVSGAF  154 (396)
Q Consensus        85 ~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~  154 (396)
                      ..+..++.+...+   ... ...+.+++.-++.|+ +.+...+...++++|..+       +++.|..++......-+|.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~g~-~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~  380 (473)
T PRK10429        303 SIFPVLSCGVLLLMGLAAP-HNALLIVIAGILLNI-GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGS  380 (473)
T ss_pred             HHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHH
Confidence            8777766655433   121 125667777788888 888888889999999976       2334557888888888888


Q ss_pred             HHHHHHHHHh
Q 016048          155 VCGTISARFI  164 (396)
Q Consensus       155 ~~g~~~~~~~  164 (396)
                      .+++.+.+.+
T Consensus       381 al~~~i~g~~  390 (473)
T PRK10429        381 AFAAFFIGVV  390 (473)
T ss_pred             HHHHHHHHHH
Confidence            8888877654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.01  E-value=6.9e-09  Score=96.05  Aligned_cols=136  Identities=13%  Similarity=0.053  Sum_probs=90.4

Q ss_pred             cchhHHHHHHHHHHHHh-HHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHH---HhccCchhHHHHHHHH----HH
Q 016048           42 ECSLAIYLSGFQQAIIG-LGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAIL---AYSRSRNFFYAYYVLR----TL  113 (396)
Q Consensus        42 ~~~~s~~~~g~~~s~~~-l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~r----~l  113 (396)
                      +.+.+..+.|++.+... .+..++.++.|++.||+|||+.+..+..+..+..+..   ++.++.  .+.+.+.-    +.
T Consensus       239 ~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~  316 (402)
T PRK11902        239 GAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKH--LWTMALAIGIENLC  316 (402)
T ss_pred             hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHH
Confidence            34667778888876654 5688999999999999999998887776665554333   344321  45554444    34


Q ss_pred             HhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHH
Q 016048          114 TAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISA----RFISTSAAFQAATAGSIISAVYM  184 (396)
Q Consensus       114 ~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~----~~~~~~~~f~~~~~~~~~~~~~~  184 (396)
                      .|+ +.+...+....++.+..|+++++.    .+...++|..+++.++    ..+||+..|.+.++++++..++.
T Consensus       317 ~g~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        317 GGM-GTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHH-HHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            555 556667777888888888766554    3333344444333344    44589999999888887765554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.98  E-value=2.3e-09  Score=83.08  Aligned_cols=108  Identities=15%  Similarity=0.128  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCcc
Q 016048          283 IAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE  361 (396)
Q Consensus       283 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~  361 (396)
                      ...++..++. +..+++.||++||+.+..+.....++.+......+.+.... ..+.+++.+...+....+..|..|+++
T Consensus         6 ~~~~~~~~~~-~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         6 GYALGQLIYS-PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             eehhHHHHHH-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            4566677777 66789999999999999988888888777776665554444 455677778888999999999999999


Q ss_pred             chhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          362 QGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       362 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      |+++.++.+....++..++|.+.+.+.+..
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  114 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFL  114 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhccc
Confidence            999999999999999999999999988754

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.97  E-value=3.5e-09  Score=91.98  Aligned_cols=118  Identities=14%  Similarity=0.036  Sum_probs=97.7

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          271 HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLR  350 (396)
Q Consensus       271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (396)
                      +-+..-.|.+-+.+++...+.+ ...|.++||+|||.++..|....++...+.+...+.......=+.+...-+......
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS-~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~r  142 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISS-PLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIR  142 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhh-hhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHH
Confidence            3355567888999999999999 777899999999999999999999988888888776322222223333344557789


Q ss_pred             HHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          351 TIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       351 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      ++++|++++|+|+.+++.++....+|-++||.++|++.+
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            999999999999999999999999999999999999987

>TIGR01272 gluP glucose/galactose transporter

Probab=98.94  E-value=1.2e-08  Score=90.47  Aligned_cols=152  Identities=10%  Similarity=0.008  Sum_probs=112.1

Q ss_pred             HHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHH
Q 016048           11 FITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSII   90 (396)
Q Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~   90 (396)
                      .+..|+...........++.|..+     ..+++.+..+.++..+.+..+..++.++.+++.||+|+||.+..+..+..+
T Consensus       146 ~~~~f~yvg~e~~~~~w~~~yl~~-----~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       146 ALGIFVYVGAEVSAGSFLVNFLSD-----PHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            444444444555666677888754     234577788999999999999999999999999999999999888888888


Q ss_pred             HHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----hh
Q 016048           91 PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----ST  166 (396)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----~~  166 (396)
                      +.++....++   ... ...-.+.|+ +.+..+|...+...+..|++ .+++.++. ....+|..+.|.+.+.+    +.
T Consensus       221 ~~~l~~~~~~---~~~-~~~~~l~g~-~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~  293 (310)
T TIGR01272       221 LSIGAALTHG---YVA-MWFVLALGL-FNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI  293 (310)
T ss_pred             HHHHHHHcCC---HHH-HHHHHHHHH-HHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence            7766666555   322 235557888 88999999999998888743 45566665 55668889999877776    34


Q ss_pred             HHHHHHHH
Q 016048          167 SAAFQAAT  174 (396)
Q Consensus       167 ~~~f~~~~  174 (396)
                      +..|++..
T Consensus       294 ~~a~~v~~  301 (310)
T TIGR01272       294 QLAFALPV  301 (310)
T ss_pred             hHHHHHHH
Confidence            55555333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.93  E-value=4e-09  Score=99.03  Aligned_cols=172  Identities=17%  Similarity=0.253  Sum_probs=145.1

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccC--Cchhhh
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYG--RKALLT   82 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G--rk~~~~   82 (396)
                      +.++.+.+...+..++.......+|.+..        +.+.+..+.+.+.++..+...++.+..|+++|+..  ++.+..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~--------~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~  369 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK--------SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL  369 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence            45566677788888888888788888844        45666678999999999999999999999999988  556667


Q ss_pred             HHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                      ++.+..+++...+++.++   ++.+.....+.|+ +.|.........+.|..+.++-..+.|+.....+++.++||++++
T Consensus       370 ~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~-~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag  445 (509)
T KOG2504|consen  370 LTLLIAGLARLFLPFATT---YVGLIVFSILFGF-CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG  445 (509)
T ss_pred             HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence            788888888889999999   9999999999999 888888888889999999999999999999999999999999999


Q ss_pred             Hh-----hhHHHHHHHHHHHHHHHHHHHHhcC
Q 016048          163 FI-----STSAAFQAATAGSIISAVYMRIFLP  189 (396)
Q Consensus       163 ~~-----~~~~~f~~~~~~~~~~~~~~~~~~~  189 (396)
                      .+     +|...|+..++..++..... +..|
T Consensus       446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~  476 (509)
T KOG2504|consen  446 LLYDITGNYDHAFYFCGLCFLLSAVLL-LILR  476 (509)
T ss_pred             eeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence            76     47778888888777766543 3344

>TIGR00896 CynX cyanate transporter

Probab=98.93  E-value=6.5e-09  Score=94.53  Aligned_cols=144  Identities=11%  Similarity=0.097  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-CCchhhhHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLTVPIT   86 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~~~~~~~   86 (396)
                      +.+.+..++...........+|.+.++        .+.+..+.+...+...++.+++.++.|+++||+ +||+.+..+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~lp~~~~~--------~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~  271 (355)
T TIGR00896       200 WQVTVFFGLQSGLYYSLIGWLPAILIS--------HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAV  271 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHH
Confidence            333333444444444555667777544        245567889999999999999999999999999 56777777888


Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCC-cccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-PGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      +.+++.+...+.++   ..... .-.+.|+ +.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus       272 ~~~~~~~~~~~~~~---~~~~~-~~~l~g~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l  345 (355)
T TIGR00896       272 LQLVGLCGLLFAPM---HGLWA-WALVLGL-GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL  345 (355)
T ss_pred             HHHHHHHHHHHhhh---hHHHH-HHHHHHH-hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888777777655   22222 4567798 888888887777765554 56678888998888888889999888876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.93  E-value=3.1e-08  Score=91.15  Aligned_cols=153  Identities=14%  Similarity=0.120  Sum_probs=111.1

Q ss_pred             chhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHH------HHHHHHHHHhh
Q 016048           43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFY------AYYVLRTLTAM  116 (396)
Q Consensus        43 ~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~r~l~G~  116 (396)
                      .+++..+.-+..........+..+++..+.||+|||+.++.+..++.+..+++..........      ..+++.++..+
T Consensus       300 aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~  379 (485)
T KOG0569|consen  300 AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFII  379 (485)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            345556677778888888899999999999999999999999999888887776542211011      12344444443


Q ss_pred             hccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016048          117 VCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCG----TISARFISTSAAFQAATAGSIISAVYMRIFLPESV  192 (396)
Q Consensus       117 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g----~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~  192 (396)
                      ..+-+..|...-+.+|.+|++.|..+++.......+...+-    |.+-..+|- +.|....+.+.+..+..++.+||++
T Consensus       380 ~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  380 SFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             hhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence            22234467888999999999999999988877766665543    444444555 7778888888888888999999997


Q ss_pred             CCcc
Q 016048          193 RDED  196 (396)
Q Consensus       193 ~~~~  196 (396)
                      .+..
T Consensus       459 gr~~  462 (485)
T KOG0569|consen  459 GRTP  462 (485)
T ss_pred             CCCH
Confidence            6543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.92  E-value=2e-08  Score=93.72  Aligned_cols=150  Identities=16%  Similarity=0.224  Sum_probs=125.3

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      ++|++..++...++..++..+..+..+.+.++..+.+        ...+....+..++..++.+++++++||+|+|+.+.
T Consensus       223 ~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~--------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~  294 (428)
T PF13347_consen  223 RNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE--------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYI  294 (428)
T ss_pred             ccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehh
Confidence            4466777888888899999998888888877754322        24577777889999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHhcc--CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCc-------ccchhHHHHHHHhhhhh
Q 016048           83 VPITLSIIPLAILAYSR--SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP-------GRRASVFGIFSGIVSGA  153 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g  153 (396)
                      .+.++.+++.++..+.+  +   .+.+++.-++.|+ +.+...+...++++|..+.       ++.|..++..+....+|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~gi-~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~  370 (428)
T PF13347_consen  295 IGLLLAALGFLLLFFLGPGS---PWLVLILFILAGI-GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG  370 (428)
T ss_pred             hhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhHh-hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence            99999999999888886  6   8899999999999 8899999999999999874       33477788888888888


Q ss_pred             hHHHHHHHHHh
Q 016048          154 FVCGTISARFI  164 (396)
Q Consensus       154 ~~~g~~~~~~~  164 (396)
                      ..+++.+.+.+
T Consensus       371 ~~la~~i~g~~  381 (428)
T PF13347_consen  371 QGLAGAIVGLL  381 (428)
T ss_pred             HHHHHHHHHHH
Confidence            88887776654

>PTZ00207 hypothetical protein; Provisional

Probab=98.92  E-value=5.4e-08  Score=92.44  Aligned_cols=129  Identities=6%  Similarity=0.077  Sum_probs=94.8

Q ss_pred             hhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHh------hhh
Q 016048          256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVA------WSS  329 (396)
Q Consensus       256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~------~~~  329 (396)
                      +.+..+.+ .+++.+|+|..+.+.+..... .....+ +..|++.||+|+|+++.++.++..++.++.++.      .+.
T Consensus        44 y~fsv~s~-~L~~~lgls~~~l~~i~svg~-~~g~~~-lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~  120 (591)
T PTZ00207         44 YAFNLISG-AMQARYNLTQRDLSTITTVGI-AVGYFL-LPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSV  120 (591)
T ss_pred             HHHHHHHH-HHHHHhCcCHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcH
Confidence            33443334 456778999999888876533 333455 456899999999999999999999999988876      233


Q ss_pred             hHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          330 WVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       330 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  388 (396)
                      +...+ ..+.+.+.+..++.....+.+.+| ++||++.|+......+|+.+.+.+...++
T Consensus       121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333 445567777777777888888887 78999999999999999986444444443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.92  E-value=2.2e-08  Score=83.65  Aligned_cols=147  Identities=18%  Similarity=0.180  Sum_probs=112.6

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      ..++.+.+..++.+..+.=....-|.+..|       .+++|+...+-+.+.-....++.+++.|.++||+|++-..+.+
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~-------rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~  336 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGPMFFQK-------RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS  336 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhHHHHHH-------hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence            456777777777777766555555666544       5678888888888888888999999999999999999998886


Q ss_pred             HHHhHH-HHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH
Q 016048           85 ITLSII-PLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF  163 (396)
Q Consensus        85 ~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  163 (396)
                      ..+..+ +-....++     ++.=+++..+.|+ +.+..-......++...|+++.|.+.+..+...++|..+.|+++++
T Consensus       337 a~~~tl~~H~~l~Ft-----~lsPy~~m~~lGL-sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~  410 (459)
T KOG4686|consen  337 ACILTLLGHSGLFFT-----FLSPYTSMTFLGL-SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF  410 (459)
T ss_pred             HHHHHHHHhhhHHhh-----hccHHHHHHHHhh-hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence            655443 33444443     2223356677788 6555554566778889999999999999999999999999999998


Q ss_pred             h
Q 016048          164 I  164 (396)
Q Consensus       164 ~  164 (396)
                      +
T Consensus       411 i  411 (459)
T KOG4686|consen  411 I  411 (459)
T ss_pred             e
Confidence            7

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.91  E-value=4.8e-08  Score=93.15  Aligned_cols=117  Identities=13%  Similarity=0.069  Sum_probs=96.9

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh------hhHH-HHHHHHHHhhhh
Q 016048          272 FNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS------SWVP-YAAAVFSILSVF  344 (396)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~------~~~~-~~~~~~~~~~~~  344 (396)
                      .+..+.+.+.+...++..++. ++.+++.||+|||+.+..+.++..++.++.....+      .+.. ..-++.|++.+.
T Consensus        53 ~~~~~~~~~~~~~~ig~~ig~-~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~  131 (502)
T TIGR00887        53 LPSSVSAAVNGSASIGTLAGQ-LFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGG  131 (502)
T ss_pred             chHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhh
Confidence            445566788888999999999 77789999999999999998888888777766543      2222 235566888999


Q ss_pred             hhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          345 SHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       345 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      ..+....++.|.+|+++||++.++.+....+|..+++.+...+..
T Consensus       132 ~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~  176 (502)
T TIGR00887       132 DYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLA  176 (502)
T ss_pred             hhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988876543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.91  E-value=6e-07  Score=86.88  Aligned_cols=140  Identities=14%  Similarity=0.107  Sum_probs=103.6

Q ss_pred             hhHHHHHHHHHHHHhHHHHhhhhcccccccc-cCCchhhhHHHHHhHHHHHHHHhccCc-----hhHHHHHHHHHHHhhh
Q 016048           44 SLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALLTVPITLSIIPLAILAYSRSR-----NFFYAYYVLRTLTAMV  117 (396)
Q Consensus        44 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~  117 (396)
                      +.+......+...+....-+...++|.++|+ +||++.+.++.++..++..+.+++...     ......+++-.+..+ 
T Consensus        19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~-   97 (654)
T TIGR00926        19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL-   97 (654)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh-
Confidence            4444555556666666666777889999996 599999999999999999888775321     112335566666676 


Q ss_pred             ccchhhHHHHHHHhcCCCccc---chhHHHHHHHhhhhhhHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHH
Q 016048          118 CEGSIHCLSLAYVADNVPPGR---RASVFGIFSGIVSGAFVCGTISARFI-----------STSAAFQAATAGSIISAVY  183 (396)
Q Consensus       118 ~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~~-----------~~~~~f~~~~~~~~~~~~~  183 (396)
                      |.|+.-|...+...|-+++++   |.+.+.++..+.++|.++++.+..++           +|+..|.+.++..++..++
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            889999999999999988653   56677788888899998887776654           3778888888877776654


Q ss_pred             H
Q 016048          184 M  184 (396)
Q Consensus       184 ~  184 (396)
                      .
T Consensus       178 f  178 (654)
T TIGR00926       178 F  178 (654)
T ss_pred             H
Confidence            4

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.91  E-value=3.3e-08  Score=81.83  Aligned_cols=317  Identities=11%  Similarity=0.042  Sum_probs=159.9

Q ss_pred             HHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHH
Q 016048           12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIP   91 (396)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~   91 (396)
                      ...++...+.....|.+-....        +.+...-++|.+.....-..++...+.|.++||-|||+.-+.-++...++
T Consensus        44 lVyslmmAgDWLQgPYvYyLYs--------tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs  115 (454)
T KOG4332|consen   44 LVYSLMMAGDWLQGPYVYYLYS--------TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS  115 (454)
T ss_pred             HHHHHHHhhhhhcCceeeeeeh--------hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH
Confidence            3444555556666776544422        22222234555555555566777778899999999999765544444333


Q ss_pred             HHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHH-HhcCCCcccchhHHHHHHHhh----hhh----hHHHHHHHH
Q 016048           92 LAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAY-VADNVPPGRRASVFGIFSGIV----SGA----FVCGTISAR  162 (396)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-i~~~~~~~~r~~~~~~~~~~~----~~g----~~~g~~~~~  162 (396)
                      ++ .-.++.   +-.+.++|.+-|+ +.+....+-.++ ++|.-+  +|+.---+.....    -.|    .+++.+.+.
T Consensus       116 Ci-TKhSpq---YkVLmVGR~LGGi-aTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn  188 (454)
T KOG4332|consen  116 CI-TKHSPQ---YKVLMVGRVLGGI-ATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGN  188 (454)
T ss_pred             HH-hhcCCc---eEEEeehhhhhhH-HHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence            32 334455   8889999999999 878777777776 566553  3332222221111    122    222222222


Q ss_pred             Hh------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhc
Q 016048          163 FI------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK  236 (396)
Q Consensus       163 ~~------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (396)
                      .+      |.-.+|-..+....+...++.---.|.-.+..                    ++++.   ....+...+.+.
T Consensus       189 ~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps--------------------~~kdl---ltqf~gaa~aia  245 (454)
T KOG4332|consen  189 LLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPS--------------------ENKDL---LTQFKGAARAIA  245 (454)
T ss_pred             HHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChh--------------------hhHHH---HHHhhHhHHHHh
Confidence            22      33455655544443333222121122111111                    00000   001222222233


Q ss_pred             CChhHHHHHHHHHHHHHhhhh-hhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcch--hHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAG-LQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEA--RLLSFGL  313 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~~~~~  313 (396)
                      .++++..+-....+.-...+. ..-|-|..-.+   -...--|.+++.+.+..++++ -+..++..|-..|  ....+.+
T Consensus       246 SD~ki~LLG~iqsLFE~smytFVFLWTPaLspn---~e~iPhGfiFatFMlASmLGS-Sla~Rl~s~s~~~ve~ymqivf  321 (454)
T KOG4332|consen  246 SDEKIALLGAIQSLFEGSMYTFVFLWTPALSPN---DEEIPHGFIFATFMLASMLGS-SLASRLLSRSSPKVESYMQIVF  321 (454)
T ss_pred             cchHHHHHHHHHHHHhhhhheeeeeecccCCCC---cccCCchhHHHHHHHHHHHhh-HHHHHHHhcCCcccchHHHHHH
Confidence            445544433333222222222 22222222111   111234788888888899988 5555565554332  3344444


Q ss_pred             HHHHHHHHHHHHhh----h---h-hHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHH
Q 016048          314 LFGCVHMFLYSVAW----S---S-WVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCIS  370 (396)
Q Consensus       314 ~~~~i~~~~~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  370 (396)
                      .+....+.+.....    +   + ...+..+++-...+..+|...-+-++..|++.|++.+-...
T Consensus       322 ~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFR  386 (454)
T KOG4332|consen  322 LVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFR  386 (454)
T ss_pred             HHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence            44444443333222    1   1 12233445567788899999999999999999988766543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.90  E-value=5e-09  Score=101.79  Aligned_cols=135  Identities=15%  Similarity=0.122  Sum_probs=110.9

Q ss_pred             hhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh--------
Q 016048          256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW--------  327 (396)
Q Consensus       256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~--------  327 (396)
                      .++....-.-++++++++..+.|++.+...++..++. +..+++.||.+||+.+..+.++.+++.+++++..        
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~-i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLI-IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHH-HHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence            3333333344567789999999999999999999999 5667999999999999999999999988876542        


Q ss_pred             -----------------------------------------h-hhH-H-HHHHHHHHhhhhhhhhhhHHHhhccCCccch
Q 016048          328 -----------------------------------------S-SWV-P-YAAAVFSILSVFSHPCLRTIVSKQVASNEQG  363 (396)
Q Consensus       328 -----------------------------------------~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  363 (396)
                                                               + .+. . ..-++.|++.+..++...+++.|.+|+++|+
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~  207 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP  207 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence                                                     0 111 1 2245567888888999999999999999999


Q ss_pred             hHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          364 KAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       364 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .+.|+.+....+|..+|+.+++.+.+.+
T Consensus       208 ~~~~i~~~~~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       208 LYIGILESIAVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            9999999999999999999999988764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.90  E-value=5.3e-09  Score=93.36  Aligned_cols=150  Identities=11%  Similarity=0.153  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHH
Q 016048          240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH  319 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~  319 (396)
                      ....++++..+...-.+.+-...+- .++.+|.+++..|++.....+..+++. ++.|++.||++|++++.+|..+-.++
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~s-Pl~gyLadryNR~~v~~vG~~iW~~A  111 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIAS-PLFGYLADRYNRKRVIAVGIFIWTLA  111 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHH-HHHHHHHhhcCcceEEeeHHHHHHHH
Confidence            3444444444444433433332222 345579999999999999999999999 77789999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          320 MFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       320 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .+.-++....|...+ -.+.|+|.+...|...++++|.+|+++|++++++.+.....|..+|-..++.+.++.
T Consensus       112 v~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  112 VFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            999999877777666 566799999999999999999999999999999999999999998877777666554

>PRK09669 putative symporter YagG; Provisional

Probab=98.90  E-value=2.2e-08  Score=93.93  Aligned_cols=151  Identities=15%  Similarity=0.052  Sum_probs=102.2

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhH
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      ++.++.++...++...+........+.+..+..+       . ....+.+.....+..+++.+++++++||+|+|+.+..
T Consensus       228 n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-------~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~  299 (444)
T PRK09669        228 NSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-------R-PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW  299 (444)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            3445555555555555555444444444333221       1 1233455566678888899999999999999999998


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCc-------ccchhHHHHHHHhhhhhhHH
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP-------GRRASVFGIFSGIVSGAFVC  156 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~  156 (396)
                      +.++.++......+.+. ++.+.+++..++.|+ +.+...+...++++|..+.       ++.|..++.......+|..+
T Consensus       300 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~g~-~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~al  377 (444)
T PRK09669        300 TIVAFVILSALIFFIPP-SNVWLIFALNILFNF-IQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAI  377 (444)
T ss_pred             HHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHH
Confidence            87766654443333221 116777888889999 8889999999999998862       22355678888888899999


Q ss_pred             HHHHHHHh
Q 016048          157 GTISARFI  164 (396)
Q Consensus       157 g~~~~~~~  164 (396)
                      |+.+++.+
T Consensus       378 g~~i~g~l  385 (444)
T PRK09669        378 GGAVVGWI  385 (444)
T ss_pred             HHHHHHHH
Confidence            98888764

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.89  E-value=4e-08  Score=91.26  Aligned_cols=145  Identities=13%  Similarity=0.062  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhh----hhcchhHHHH-HHHH
Q 016048          241 FSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAP----TVGEARLLSF-GLLF  315 (396)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~g~~~~~~~-~~~~  315 (396)
                      +..+....+...+.+.....+++.|+++ +|.++...+.+.....+...+.+ ++.|+++|    |+|||+.... +...
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~-Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQ-PLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-hHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            4444445555566666677788888754 69999999999999999999999 77789999    5999988766 4666


Q ss_pred             HHHHHHHHHHhhhhh-----------------HHHH-HHHHHHhhhhhhhhhhHHHhhccCCccc--hhHhhhHHHHHHH
Q 016048          316 GCVHMFLYSVAWSSW-----------------VPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQ--GKAQGCISGICSF  375 (396)
Q Consensus       316 ~~i~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~~  375 (396)
                      ..+++.++++..+..                 .... ..+..+......+...+++.|.+|+++|  +.++++.+....+
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l  163 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI  163 (477)
T ss_pred             HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence            667777776654321                 1111 2223446666778889999999998865  6799999999999


Q ss_pred             HHHhhhhhhhhh
Q 016048          376 ANLVSPLAFSPL  387 (396)
Q Consensus       376 g~~~~~~~~g~l  387 (396)
                      |+.+++.+++..
T Consensus       164 G~ilg~~~g~~~  175 (477)
T TIGR01301       164 GNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.88  E-value=1.7e-08  Score=95.41  Aligned_cols=121  Identities=12%  Similarity=0.050  Sum_probs=103.6

Q ss_pred             hccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHhhhhh
Q 016048          269 KFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW--SSWVPYA-AAVFSILSVFS  345 (396)
Q Consensus       269 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~  345 (396)
                      ++++++.+.|.+.+...++..+++ +..|++.||+|+|+.+..+.++..++.++.....  +.+..++ -++.|++.+..
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~  148 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQ-IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV  148 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHH-cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence            468899999999999999999999 7778999999999999999888888777665432  2323333 56668888999


Q ss_pred             hhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          346 HPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       346 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      .|....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+.
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~  193 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES  193 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998876

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.88  E-value=6.3e-08  Score=85.78  Aligned_cols=162  Identities=20%  Similarity=0.283  Sum_probs=123.4

Q ss_pred             HHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhH
Q 016048           10 LFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSI   89 (396)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~   89 (396)
                      .....+....+.....+..+.+..+......     . .+.++..+.+.++..+++++.|.++||+|||+.+..+.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~   80 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSLSSG-----R-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFL   80 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCCCch-----h-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHH
Confidence            4445555556777777777777555321111     0 467899999999999999999999999999988888887666


Q ss_pred             HHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCc-ccchhHHHHHHH-hhhhhhHHHHHHHHHh---
Q 016048           90 IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP-GRRASVFGIFSG-IVSGAFVCGTISARFI---  164 (396)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~~---  164 (396)
                      ++.++..+..+ ...+.+++.|..+|+ +.+...+...+++.|+.|+ ++|+...+.... ...+|..++|.+++.+   
T Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          81 LGTLLLALAPN-VGLALLLILRLLQGL-GGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHhCcc-chHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655 338889999999999 8888999999999999998 688888888888 5888888888777654   


Q ss_pred             ---hhHHHHHHHHHHHHH
Q 016048          165 ---STSAAFQAATAGSII  179 (396)
Q Consensus       165 ---~~~~~f~~~~~~~~~  179 (396)
                         +||..|.........
T Consensus       159 ~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         159 LLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HhcchHHHHHHHHHHHHH
Confidence               577766555554443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.85  E-value=1.3e-08  Score=95.81  Aligned_cols=121  Identities=13%  Similarity=0.077  Sum_probs=102.7

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhc----------cCchhHHHHHH
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS----------RSRNFFYAYYV  109 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~  109 (396)
                      ...++.++.+.|+..+...++.+++....+++.+|++.|+++.++.++.+++.+.....          ++   .+.+..
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~---~~~~~~  356 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISD---EVFVLG  356 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCC---eeeeee
Confidence            34678888999999999999999999999999999999999999999998887654321          22   334555


Q ss_pred             HHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048          110 LRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus       110 ~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      .-++.++ +.+........++.+.+|+++++...++.....++|..+++.+++.+
T Consensus       357 ~~~l~~~-~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       357 DSIIAEV-LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             hhHHHHH-HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677887 77777888899999999999999999999999999999999888876

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.80  E-value=1.4e-07  Score=83.16  Aligned_cols=146  Identities=14%  Similarity=-0.011  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY  323 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  323 (396)
                      ...+.+..+......+..+.+.+++.++++..+++.+......+-.+.. +..+++.+|+|.|+-+..++.++++++.++
T Consensus        17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~-lpa~~~~kk~gyk~gi~lgL~l~avg~~lF   95 (422)
T COG0738          17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMS-LPAGLLIKKLGYKAGIVLGLLLYAVGAALF   95 (422)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHh-ccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            3334444455556667777788899999999999999999988888888 666899999999999999999999999988


Q ss_pred             HHhhh---hhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          324 SVAWS---SWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       324 ~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      .-+.+   ...... .++++.|.+......+.++..+-|++....-..+.+.++.+|.+++|.+++.+..+
T Consensus        96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738          96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            64433   222222 56678888899999999999999999889999999999999999999999999874

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.76  E-value=1.7e-06  Score=73.09  Aligned_cols=150  Identities=15%  Similarity=0.124  Sum_probs=106.2

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCc----hhHHHHHHHHHHHh
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSR----NFFYAYYVLRTLTA  115 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G  115 (396)
                      ++.++.+.+|...+.....+|..+| ++.|.+.||+|+|.++.++.+...++..+...+-+.    .++|.+.+..++.|
T Consensus        29 k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~  107 (250)
T PF06813_consen   29 KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGG  107 (250)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHc
Confidence            4467788889999999999998874 889999999999999999999999998877654221    23777877777877


Q ss_pred             hhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-h-h-HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016048          116 MVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-S-T-SAAFQAATAGSIISAVYMRIFLPESV  192 (396)
Q Consensus       116 ~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-~-~-~~~f~~~~~~~~~~~~~~~~~~~e~~  192 (396)
                      . +.+...........+.+| ++||.+.|+.-...+++..+-..+...+ + . ..-+.+.+....+..+...+++++.|
T Consensus       108 ~-s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  108 N-SSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             c-cHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            7 656666666666667887 6899999999999888877655554433 2 2 22333334433333333334555443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.75  E-value=1.9e-06  Score=75.14  Aligned_cols=352  Identities=12%  Similarity=0.014  Sum_probs=193.5

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccc-----ccCC
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD-----KYGR   77 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D-----r~Gr   77 (396)
                      .++++..+.....+.+.-.+... .+|.+++..        +.|.+..+...-++. . .---++|.++.|     |+||
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak--------~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k~~Gr   97 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK--------GVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSKRFGR   97 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC--------Ccchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHHhhcc
Confidence            34567777888888888888888 778886531        333334443222211 1 112357899999     9999


Q ss_pred             chhhhH-HHHHhHHHHHHHHhccCc--------hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHH
Q 016048           78 KALLTV-PITLSIIPLAILAYSRSR--------NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSG  148 (396)
Q Consensus        78 k~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  148 (396)
                      ||..++ +..+.+......+...+.        +....+....++.-+ ..+.--.+...+.-.+.++++.|.+......
T Consensus        98 rksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnf-laAtQDIAVDgwALtmLs~e~lgyaST~q~V  176 (510)
T KOG3574|consen   98 RKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNF-LAATQDIAVDGWALTMLSRENLGYASTCQSV  176 (510)
T ss_pred             ccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHH-HHhhhhhhhhHHHHHhcCHhhcCchhHHHHH
Confidence            998777 444444444444332221        012333334455555 5566666778888888888999888777777


Q ss_pred             hhhhhhHHHHHHHHHh-----------hh---------HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhh
Q 016048          149 IVSGAFVCGTISARFI-----------ST---------SAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEI  208 (396)
Q Consensus       149 ~~~~g~~~g~~~~~~~-----------~~---------~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~  208 (396)
                      +.+.|..+|..+--.+           +|         ..-.++.+.+..+...+..+.-+|.+.+.+            
T Consensus       177 g~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~------------  244 (510)
T KOG3574|consen  177 GQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD------------  244 (510)
T ss_pred             HHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh------------
Confidence            7777776664332111           12         112334444444444444333333222111            


Q ss_pred             hhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHH
Q 016048          209 SASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAG  288 (396)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  288 (396)
                               ++.+...+..++-+++.+ +-|....+.......-..+.+-....+.-+.|. |.+..+.+......--.+
T Consensus       245 ---------~e~~~~i~~~yk~l~~vL-klk~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~v~~~plq  313 (510)
T KOG3574|consen  245 ---------EELELGIHESYKLLRDVL-KLKSVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEELALIAVPLVPLQ  313 (510)
T ss_pred             ---------hhhhcCHHHHHHHHHHHH-cCccHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhHheeeeeehhhHH
Confidence                     001111111232333333 456666666666666667777676677777765 998887665553333333


Q ss_pred             HHHHHHHHHhhhhhhcchhHH------HHHHHHHHHHHHHHHHhhhh-------h-HHHH--H---HHHHHhhhhhhhhh
Q 016048          289 TISQLIMMPVLAPTVGEARLL------SFGLLFGCVHMFLYSVAWSS-------W-VPYA--A---AVFSILSVFSHPCL  349 (396)
Q Consensus       289 ~~~~~~~~~~l~~~~g~~~~~------~~~~~~~~i~~~~~~~~~~~-------~-~~~~--~---~~~~~~~~~~~~~~  349 (396)
                      ++....+ |++..  |+|++.      ..=.........+..+.+..       . ...+  +   .+-.......+...
T Consensus       314 I~l~~~~-gk~ta--~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~  390 (510)
T KOG3574|consen  314 IALPLYI-GKWTA--GPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSG  390 (510)
T ss_pred             Hhhhhhh-eeecC--CCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHH
Confidence            4433222 22222  122111      11111111222222222210       0 0111  1   11233344455677


Q ss_pred             hHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          350 RTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       350 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ++..+++.||...|+.+.+.|...++|+---..+..++.|...
T Consensus       391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            8889999999999999999999999999999999999998764

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=3.7e-08  Score=86.26  Aligned_cols=123  Identities=15%  Similarity=0.148  Sum_probs=110.5

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhh
Q 016048          271 HFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCL  349 (396)
Q Consensus       271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  349 (396)
                      +-+..+.|+++....+.+++.+ ++.|.+.||+|+|..+.+|+.++....+++++..+.+..++ =.+-|++.++.....
T Consensus       102 ~~e~~~iG~LFaskA~~qllvn-p~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVN-PFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhc-ccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            5566789999999999999999 66678999999999999999999999999999988876655 456689999999999


Q ss_pred             hHHHhhccCCcc-chhHhhhHHHHHHHHHHhhhhhhhhhhhcccCC
Q 016048          350 RTIVSKQVASNE-QGKAQGCISGICSFANLVSPLAFSPLTGDCRFS  394 (396)
Q Consensus       350 ~~~~~~~~p~~~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  394 (396)
                      .++++|.+|+++ |++++|+.-.+..+|-.++|.++|.+||..+.+
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~  226 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKS  226 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCc
Confidence            999999999875 799999999999999999999999999987654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.70  E-value=1.3e-07  Score=86.27  Aligned_cols=152  Identities=15%  Similarity=0.156  Sum_probs=116.4

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      ++|++..+++..++...+.++....+..|....+       +.+..+..+.......+.+++.+++.++++|+|+|+++.
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l-------g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~  306 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL-------GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL  306 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEc-------CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Confidence            4556667777788888888888888777765543       333355667777777888888999999999999999999


Q ss_pred             HHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCc-------ccchhHHHHHHHhhhhhhH
Q 016048           83 VPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP-------GRRASVFGIFSGIVSGAFV  155 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~  155 (396)
                      ++.++..++.++..+.+. ++.+.+++..++.++ +.+...+...++++|..+-       +.-|...+......=+|..
T Consensus       307 ~~~~~~~i~~~~~~f~~~-~~~~l~~~~~~i~~~-g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a  384 (467)
T COG2211         307 IGLLLLAVGYLLLYFTPA-GSVVLIVVALIIAGV-GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA  384 (467)
T ss_pred             HHHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHH-HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence            999999999999988873 337888889999998 8899999999999988763       2335556666666666666


Q ss_pred             HHHHHHHH
Q 016048          156 CGTISARF  163 (396)
Q Consensus       156 ~g~~~~~~  163 (396)
                      ++..+.++
T Consensus       385 la~~~~g~  392 (467)
T COG2211         385 LAGFIPGW  392 (467)
T ss_pred             HHHHHHHH
Confidence            66655444

>PRK11462 putative transporter; Provisional

Probab=98.66  E-value=4.2e-07  Score=85.45  Aligned_cols=150  Identities=8%  Similarity=0.001  Sum_probs=91.2

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      |.+..+....++..............+.....+       .. ...+.+...+.++.+++.+++++++||+|+|+++..+
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-------~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~  299 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILG-------TP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWT  299 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC-------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            344445545555555555554444444333221       11 1335567778888899999999999999999998765


Q ss_pred             HHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCC-------cccchhHHHHHHHhhhhhhHHH
Q 016048           85 ITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP-------PGRRASVFGIFSGIVSGAFVCG  157 (396)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g  157 (396)
                      ..+..+..++..+.++.+ .+.+++.-++.|+ +.+...+...++++|..+       +++.|..++......-+|..+|
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~-~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg  377 (460)
T PRK11462        300 NALLAVISLAMFFVPMQA-SITMFVFIFVIGV-LHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFG  377 (460)
T ss_pred             HHHHHHHHHHHHHhchhH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            554444344433333321 2234445566787 666766777788888776       2333444566666777777777


Q ss_pred             HHHHHHh
Q 016048          158 TISARFI  164 (396)
Q Consensus       158 ~~~~~~~  164 (396)
                      +.+++.+
T Consensus       378 ~~i~g~i  384 (460)
T PRK11462        378 GALIGWM  384 (460)
T ss_pred             HHHHHHH
Confidence            7666543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.65  E-value=4.7e-08  Score=88.84  Aligned_cols=166  Identities=14%  Similarity=0.219  Sum_probs=135.2

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      +..+++..++.+.+.+.+...+-..++|        .+......|........+-++.-++.+++.+|+|+-+++.+++.
T Consensus       373 ~llff~~av~mG~g~~lv~tFLfWHled--------~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa  444 (618)
T KOG3762|consen  373 ILLFFFVAVVMGAGVGLVFTFLFWHLED--------LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLA  444 (618)
T ss_pred             EEehhHHHHHHHHHHHHHHHHHHHHHhh--------cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhh
Confidence            3445666677777777777777666444        33444567777778888888888999999999999999999999


Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHH-hhhhhhHHHHHHHHHh-
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSG-IVSGAFVCGTISARFI-  164 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~~-  164 (396)
                      +..+=.+..+..+|   .|..+-..+++|+ ..+..+.+..+|+++..||+-|..+.++++. ..++|--+|.++++.+ 
T Consensus       445 ~~~~Rf~~~S~L~n---~W~vLPieilqgi-t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v  520 (618)
T KOG3762|consen  445 CNVGRFLYYSYLQN---PWMVLPIEILQGI-THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV  520 (618)
T ss_pred             HHHHHHHHHHHhcC---chheeeHHHHHHH-HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh
Confidence            99999999999999   8999999999999 9999999999999999999999999998865 4566666777777664 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHH
Q 016048          165 ---STSAAFQAATAGSIISAVYM  184 (396)
Q Consensus       165 ---~~~~~f~~~~~~~~~~~~~~  184 (396)
                         +-|..|...++.+++.+++.
T Consensus       521 ~~fg~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  521 ERFGARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             eeehhHHHHHHHHHHHHHHHHHH
Confidence               67888888888777765543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.63  E-value=1.8e-05  Score=71.97  Aligned_cols=369  Identities=11%  Similarity=0.050  Sum_probs=189.2

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHH-HhHHHHhhhhccccccc-----ccCCchh
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAI-IGLGTLVMMPLVGNLSD-----KYGRKAL   80 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~-~~l~~~~~~~~~G~l~D-----r~Grk~~   80 (396)
                      +..+.+..++.+.-.++....+|.++++.      .-+.|.++.|...-+ +...   .-++|.++.|     |+||||.
T Consensus         2 ~~lL~~LY~lQGiP~GL~~gsiPflL~~~------~~~~sy~q~~~fSla~~PfS---lKlLWaPiVDs~y~~~~GRRKS   72 (544)
T PF13000_consen    2 IALLVLLYFLQGIPLGLAFGSIPFLLQSM------AKKVSYSQQAIFSLASYPFS---LKLLWAPIVDSVYSKRIGRRKS   72 (544)
T ss_pred             eeHHHHHHHHcCcccccccccchhhhccc------cCCCChhHheeeeeeechhH---HHHhhhhhhhhhcccccCCcch
Confidence            45667778888888888877778887661      112333444432111 1111   1234555555     8999999


Q ss_pred             hhH-HHHHhHHHHHHHHhccC----------------c---h--hHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCccc
Q 016048           81 LTV-PITLSIIPLAILAYSRS----------------R---N--FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGR  138 (396)
Q Consensus        81 ~~~-~~~~~~~~~~~~~~~~~----------------~---~--~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~  138 (396)
                      .++ .-.+.++..+..+...+                .   .  ....+....++.-+ -.+.--.+...+.-...++++
T Consensus        73 WiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~f-l~ATQDIAVDGWALT~Ls~~n  151 (544)
T PF13000_consen   73 WIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVF-LCATQDIAVDGWALTMLSPEN  151 (544)
T ss_pred             hhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHH-HHccCCceeehhhhhhcChhh
Confidence            887 33444444444433220                0   0  01122233323333 234444456667777778899


Q ss_pred             chhHHHHHHHhhhhhhHHHHHHHHHhh-------h-H------------HHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 016048          139 RASVFGIFSGIVSGAFVCGTISARFIS-------T-S------------AAFQAATAGSIISAVYMRIFLPESVRDEDLY  198 (396)
Q Consensus       139 r~~~~~~~~~~~~~g~~~g~~~~~~~~-------~-~------------~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~  198 (396)
                      ++.+......+.+.|..++..+--.++       | |            .-..+.+.+.++..+...++-+|.|..+...
T Consensus       152 ~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~  231 (544)
T PF13000_consen  152 VGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLP  231 (544)
T ss_pred             cchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCc
Confidence            988877777777777776644332221       0 1            1123334444444555545556655332211


Q ss_pred             c--ccccchhhhhhhh-hhhhh----hhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Q 016048          199 T--PILSSKAEISASC-EESTK----KLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH  271 (396)
Q Consensus       199 ~--~l~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  271 (396)
                      +  ..++.+++..+.. +.+++    .++...-++..+.+++.+ +-|.+..+.+.....-.++..-......-+.|. |
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~il-kLp~V~~li~ilL~~KigF~a~da~T~LKLlEk-G  309 (544)
T PF13000_consen  232 KIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKIL-KLPNVQTLIIILLTAKIGFQANDAVTSLKLLEK-G  309 (544)
T ss_pred             cccccccccccccccceecccccccchhhhhhHHHHHHHHHHHH-cCchHHHHHHHHHHHHhccccchhhhHHHHHHc-C
Confidence            1  0010000000000 00000    011111122344444445 467777777777777777776666666666665 9


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHhhhhhh--cchh-----------------------------HHHHHHHHHHHH-
Q 016048          272 FNKNQFADLMVIAGIAGTISQLIMMPVLAPTV--GEAR-----------------------------LLSFGLLFGCVH-  319 (396)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~-----------------------------~~~~~~~~~~i~-  319 (396)
                      ++.++.+....+.-=.+++..     +.+.|+  |+++                             ....++..-.+. 
T Consensus       310 ~~KE~LAl~~li~~P~qii~~-----~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a  384 (544)
T PF13000_consen  310 LSKEDLALLVLIDFPFQIILP-----YYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAA  384 (544)
T ss_pred             CCHHHhHHHHHHhhhHHHHHH-----HHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHH
Confidence            998886555444433444444     333332  2221                             111111111111 


Q ss_pred             ---HHHHHHhh-h----hhHHHHH---HHH-HHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          320 ---MFLYSVAW-S----SWVPYAA---AVF-SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       320 ---~~~~~~~~-~----~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                         .......+ +    .+.....   -++ .+.....+....++-+++.+|..-|+.+-+.|...++|+---..+.=++
T Consensus       385 ~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~l  464 (544)
T PF13000_consen  385 LLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWL  464 (544)
T ss_pred             HHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHH
Confidence               11111111 1    1111111   112 2334455678889999999999999999999999999999888888888


Q ss_pred             hhccc
Q 016048          388 TGDCR  392 (396)
Q Consensus       388 ~~~~~  392 (396)
                      .|.+.
T Consensus       465 VD~fT  469 (544)
T PF13000_consen  465 VDYFT  469 (544)
T ss_pred             hhhcc
Confidence            88764

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.63  E-value=3.4e-08  Score=85.56  Aligned_cols=126  Identities=21%  Similarity=0.263  Sum_probs=97.1

Q ss_pred             hHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchh-HHHHHHHHHHHhhhccchhhHHHHHHHhcCCCc
Q 016048           58 GLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNF-FYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP  136 (396)
Q Consensus        58 ~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~  136 (396)
                      .+....|.++.+++.||+|||+.+..+.+++++..++...+.+.+. ..+++.+|++...     .+.+.+.|..|++|.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg-----~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG-----AFQVAYVYTPEVYPT  465 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc-----hheEEEEecCcccch
Confidence            4666778889999999999999999999999999988877755332 2344566666543     345789999999999


Q ss_pred             ccchhHHHHHHHhhhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhcC
Q 016048          137 GRRASVFGIFSGIVSGAFVCGTISARFI--STSAAFQAATAGSIISAVYMRIFLP  189 (396)
Q Consensus       137 ~~r~~~~~~~~~~~~~g~~~g~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~  189 (396)
                      +-|+...|....+.-+|.++.|.++-..  +-..+..+.+.+.++..+.. .++|
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIav-cffP  519 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAV-CFFP  519 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHh-eeee
Confidence            9999999999999999999999999433  23345556666666666655 4555

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.59  E-value=2.4e-06  Score=76.13  Aligned_cols=171  Identities=17%  Similarity=0.196  Sum_probs=136.1

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccc-ccCCchhhhH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSD-KYGRKALLTV   83 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D-r~Grk~~~~~   83 (396)
                      ++....+...++..++.++..+++.+|       +.+-++.+..++.-+++....|.+++....|++.. |.++|+.-.+
T Consensus       208 ~~a~~f~~fl~l~t~a~~~QD~iLEPy-------gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~  280 (403)
T PF03209_consen  208 PQARRFFVFLFLGTLAFFMQDVILEPY-------GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAAL  280 (403)
T ss_pred             CChhHHHHHHHHHHHHHHhhHHHcCCc-------hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            344556677778888888888777777       34567888889999999999999999999998877 7788888888


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF  163 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  163 (396)
                      ++....++..+..++....+.+.+...-++.|+ +.|.+.....+.+.|..++++.|..+|.+.....++..+|..+++.
T Consensus       281 G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~-g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~  359 (403)
T PF03209_consen  281 GCLLGALAFALIILAGPLGSPWLFRPGVFLLGL-GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA  359 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887766555333337899999999999 9999999999999999999999999999999999888888888876


Q ss_pred             h--------------hhHHHHHHHHHHHHHHHHH
Q 016048          164 I--------------STSAAFQAATAGSIISAVY  183 (396)
Q Consensus       164 ~--------------~~~~~f~~~~~~~~~~~~~  183 (396)
                      .              ++-.+|.+.++..+++..+
T Consensus       360 ~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  360 LRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            4              2344566666655554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.58  E-value=1.2e-06  Score=83.70  Aligned_cols=110  Identities=10%  Similarity=0.057  Sum_probs=96.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhh
Q 016048          277 FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSK  355 (396)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  355 (396)
                      .+++.+...++..++. ++.++++|++|||+.+..+.+...++.++...+.+...... -++.|++.+........+.+|
T Consensus        91 ~s~~~s~~~lga~~g~-l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   91 QGLLTSILNLGALVGS-LLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            3799999999999999 77789999999999999999999999999999988776666 567789999999999999999


Q ss_pred             ccCCccchhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          356 QVASNEQGKAQGCISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       356 ~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  388 (396)
                      ..|++.||...+..+....+|..++ .+.+...
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~  201 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLG-YCINYGT  201 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence            9999999999999999988887777 4444444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.56  E-value=1.2e-06  Score=76.29  Aligned_cols=167  Identities=14%  Similarity=0.139  Sum_probs=125.3

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-CCchhhhHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLTVPI   85 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~~~~~~   85 (396)
                      -+.+.+..-+..+..+....-+|.+..|        .+.|+.+.|...+...+.++..++....+++|. ++|+..+...
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~--------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILID--------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHH--------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            3445555556667777778888998665        478888999999999999999999999999965 6677777788


Q ss_pred             HHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccc-hhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           86 TLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRR-ASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      +++.++...+.+.+....++    .-++.|+ +.|..++.....+.+.+++.++ ++..++.+....+=..+||.+.|++
T Consensus       282 ~~~l~G~~G~~~~P~~~~~l----w~~llG~-G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPIL----WALLLGL-GQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHH----HHHHHhC-ccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            88888888888887632222    2488999 9899999999999998875554 3434455555555556689999987


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHH
Q 016048          165 -----STSAAFQAATAGSIISAVYMRI  186 (396)
Q Consensus       165 -----~~~~~f~~~~~~~~~~~~~~~~  186 (396)
                           +|+..+.......+...+..+.
T Consensus       357 hDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         357 HDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence                 6888887777777666655433

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.51  E-value=1.7e-07  Score=63.58  Aligned_cols=73  Identities=21%  Similarity=0.209  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      ..+-...++...+.+...|.+|.+        .++.+.++.++|.+.++..+...++.+++|.++||++|++..+.....
T Consensus         3 ~~lk~~yf~~f~~~g~~~Pfl~~~--------~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    3 LPLKAFYFFYFAALGCLYPFLPLY--------LKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHh--------hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            345566777888889999999999        445689999999999999999999999999999999998888776544


Q ss_pred             h
Q 016048           88 S   88 (396)
Q Consensus        88 ~   88 (396)
                      .
T Consensus        75 ~   75 (77)
T PF12832_consen   75 M   75 (77)
T ss_pred             H
Confidence            3

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.49  E-value=3.9e-06  Score=72.38  Aligned_cols=311  Identities=15%  Similarity=0.123  Sum_probs=181.6

Q ss_pred             HHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccch
Q 016048           61 TLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRA  140 (396)
Q Consensus        61 ~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~  140 (396)
                      +++.-.+.=.+.|-.-.|++++.-.+.......+.-+.++   .+..-+..++.|. .. ....+.++++-+..+++++.
T Consensus        55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s---V~~mQvlE~FyG~-~t-AaEIAYysYIYs~Vd~~~Yq  129 (433)
T KOG3810|consen   55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS---VKAMQVLEFFYGP-AT-AAEIAYYSYIYSKVDPEMYK  129 (433)
T ss_pred             HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC---chheeeehhhcCh-HH-HHHHhhhheeeeecCHHHHH
Confidence            3444445556889999999999988888888888889999   8888889999998 53 44567899999999999999


Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHh---hh---HHHHHHHHHHHHHHHHHHHHhcCCCCCCcc-cccccccchhhhhhhhh
Q 016048          141 SVFGIFSGIVSGAFVCGTISARFI---ST---SAAFQAATAGSIISAVYMRIFLPESVRDED-LYTPILSSKAEISASCE  213 (396)
Q Consensus       141 ~~~~~~~~~~~~g~~~g~~~~~~~---~~---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~l~~~~~~~~~~~~  213 (396)
                      ++.+...+..-.|...|..++..+   .|   ...=.+... .........+++|..++..- +++..+....+.++...
T Consensus       130 rvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~-~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~  208 (433)
T KOG3810|consen  130 RVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLA-EVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNP  208 (433)
T ss_pred             HHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHH-HHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCc
Confidence            999999998888888888888765   22   222222222 22223334467776653210 00000111111111100


Q ss_pred             hhhhhhhhhc-cCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc-ccccchhhHHHHHHHHHHHH
Q 016048          214 ESTKKLQVFK-RLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH-FNKNQFADLMVIAGIAGTIS  291 (396)
Q Consensus       214 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~  291 (396)
                      +.+..+..+. ...-++++.... ++|.+....+=..+....++...++.....++.-. -...-.|..=+...+.+.++
T Consensus       209 ~~~~~~~l~~~~~~l~~~l~~~y-~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~  287 (433)
T KOG3810|consen  209 QASYMSYLRGAFVLLWRDLQECY-SNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIA  287 (433)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHh-cCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHH
Confidence            0000000000 000122322223 34544443333344444445555555544444321 11112355555666666666


Q ss_pred             HHHHHHhhhhhhcch--hHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHhhhhhhhhhhHHHhhccCCccchhHhhh
Q 016048          292 QLIMMPVLAPTVGEA--RLLSFGLLFGCVHMFLYSVAWSSWVPYAA-AVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC  368 (396)
Q Consensus       292 ~~~~~~~l~~~~g~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  368 (396)
                      . +..|.+--+..|.  .++.++.+..+-..+.+....+.|...+. .++...+....++....+++....|.-|-.+|+
T Consensus       288 ~-~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGi  366 (433)
T KOG3810|consen  288 A-LAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGI  366 (433)
T ss_pred             H-HHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeeh
Confidence            6 5556655444433  34556666666666677777777777664 445666777777887888888888888999998


Q ss_pred             HHHHHHHHHHh
Q 016048          369 ISGICSFANLV  379 (396)
Q Consensus       369 ~~~~~~~g~~~  379 (396)
                      .+++.-+-..+
T Consensus       367 NTFvAl~lQsi  377 (433)
T KOG3810|consen  367 NTFVALILQSI  377 (433)
T ss_pred             HHHHHHHHHHh
Confidence            87766554433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.47  E-value=7e-07  Score=83.04  Aligned_cols=171  Identities=17%  Similarity=0.163  Sum_probs=124.7

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCC------
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGR------   77 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr------   77 (396)
                      .+.++.+++..+....+.......+|.|+.|.       ++.+..+.|+..++..+...+..+++|.++||.-+      
T Consensus       257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~V-------L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t  329 (466)
T KOG2532|consen  257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEV-------LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSET  329 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchH
Confidence            34577889999999999999999999998874       35555688999999999999999999999998755      


Q ss_pred             ---chhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhh
Q 016048           78 ---KALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAF  154 (396)
Q Consensus        78 ---k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  154 (396)
                         |-.-.++....+++.+..++.++.+....+...-+-.++  .|...+....-..|..| ++-+..+++.+....+..
T Consensus       330 ~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~--~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~  406 (466)
T KOG2532|consen  330 TVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL--SGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAG  406 (466)
T ss_pred             hHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH--cccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHH
Confidence               222333555566666666666643322233333332343  23333334444445454 888999999999999999


Q ss_pred             HHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHH
Q 016048          155 VCGTISARFI-------STSAAFQAATAGSIISAVYM  184 (396)
Q Consensus       155 ~~g~~~~~~~-------~~~~~f~~~~~~~~~~~~~~  184 (396)
                      .++|.+.+.+       .||+.|++.+++.++..+..
T Consensus       407 ~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  407 FIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence            9999998765       69999999999888876544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.45  E-value=1.1e-06  Score=84.40  Aligned_cols=120  Identities=14%  Similarity=0.091  Sum_probs=105.7

Q ss_pred             hhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhh
Q 016048          268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSH  346 (396)
Q Consensus       268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  346 (396)
                      +.+..+........++..++..+|. ++.|.++||+|||+++..+.++..++-+..++.++.+...+ -++.|++.+...
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~-~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGS-LIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHH-hhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            3445666777788888999999999 67789999999999999999999999999999988877666 567788999999


Q ss_pred             hhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          347 PCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       347 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      .....+..|.+++++|+.+..+ ......++.++|...+++.+
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999 88888999999999988876

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.42  E-value=8.4e-06  Score=77.41  Aligned_cols=124  Identities=15%  Similarity=0.120  Sum_probs=89.5

Q ss_pred             hhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHH
Q 016048          260 GSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVF  338 (396)
Q Consensus       260 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~  338 (396)
                      +.++...++ .|-++. ..++.....+...+.. ++.|+++|.+|||...+.+.++..++.++.+...+....+. ..+.
T Consensus        65 ~~l~~I~~d-iG~~~~-~~w~~~~~~l~~av~~-~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~  141 (599)
T PF06609_consen   65 SILPYINAD-IGGSDN-WSWFSTAWTLASAVSF-PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY  141 (599)
T ss_pred             HHHHHHHHh-cCCCcc-chHHHHHHHHHHHHHH-HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence            334444444 466544 4677777888888888 66789999999999999999999999999998888766666 4555


Q ss_pred             HHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          339 SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                      +++.+... .....++|..|.+.|..+.++.....-.....+|.+...+
T Consensus       142 GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~  189 (599)
T PF06609_consen  142 GVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF  189 (599)
T ss_pred             HHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence            77655444 4455689999999998887766654444444555555444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.37  E-value=0.00019  Score=67.07  Aligned_cols=282  Identities=13%  Similarity=0.124  Sum_probs=161.6

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhH-HHHhhhhcccccccccCCchhhhH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGL-GTLVMMPLVGNLSDKYGRKALLTV   83 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grk~~~~~   83 (396)
                      +++..+.+..|+..+.++.....=...+.+.    .     .+..+.++-....+ ...+...+..+++||++|++++-.
T Consensus        24 ~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~----~-----gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~   94 (491)
T PF03219_consen   24 KKFLPLALMFFFILFNYTILRDLKDTLVVTA----Q-----GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYI   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCeEEEec----C-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3455566666666666655443322111111    1     22233444332233 334556679999999999999888


Q ss_pred             HHHHhHHHHHHHHhc---------cCch-------------------hHHHHHHHHHHHhhhccchhhH-HHHHHHhcCC
Q 016048           84 PITLSIIPLAILAYS---------RSRN-------------------FFYAYYVLRTLTAMVCEGSIHC-LSLAYVADNV  134 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~---------~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~-~~~~~i~~~~  134 (396)
                      ....+.....+.++.         ++..                   ..|.+.+..+..-+ -+....+ .-..+..|.+
T Consensus        95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aEl-wgsvvlSlLFW~fAN~it  173 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAEL-WGSVVLSLLFWGFANEIT  173 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            777776666666543         1100                   12333344444444 2223222 4578899999


Q ss_pred             CcccchhHHHHHHHhhhhhhHHHHHHHHHhh-------------hHHHHH-HHHHHHH--HHHHHHHHhcCCCCCCcccc
Q 016048          135 PPGRRASVFGIFSGIVSGAFVCGTISARFIS-------------TSAAFQ-AATAGSI--ISAVYMRIFLPESVRDEDLY  198 (396)
Q Consensus       135 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~-------------~~~~f~-~~~~~~~--~~~~~~~~~~~e~~~~~~~~  198 (396)
                      +.+|-.|..+++..+.++|.++++.+...+.             |...+. +..++.+  +..+.....+.+...++++ 
T Consensus       174 t~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~-  252 (491)
T PF03219_consen  174 TVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPR-  252 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc-
Confidence            9999999999999999999998877766552             222221 1111111  1112222233222111110 


Q ss_pred             cccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccc--
Q 016048          199 TPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQ--  276 (396)
Q Consensus       199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--  276 (396)
                                   ..+...++++++++.+.+|.++.+.++|.+..+++...+............-..+++.+. ++.+  
T Consensus       253 -------------~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~-~~~~ys  318 (491)
T PF03219_consen  253 -------------FYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP-DPNDYS  318 (491)
T ss_pred             -------------cchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchHHH
Confidence                         001112233445556788888888899999988888887777766666555555555432 2222  


Q ss_pred             --hhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHH
Q 016048          277 --FADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFG  312 (396)
Q Consensus       277 --~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  312 (396)
                        .|......++..++.. ++++.+.+|+|-+....+.
T Consensus       319 afmG~~~~~tGivtii~~-~l~~~iir~~GW~~~Alit  355 (491)
T PF03219_consen  319 AFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALIT  355 (491)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHh
Confidence              3555666777777777 6778889999877665544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.37  E-value=4.1e-07  Score=62.07  Aligned_cols=75  Identities=20%  Similarity=0.262  Sum_probs=67.8

Q ss_pred             HhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHh
Q 016048           18 CFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAY   97 (396)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~   97 (396)
                      +++...+.|.+|.+        ++|.++|..+.|++.+..++|+++|.+...++.++..+++.+..+.+...+..+.+++
T Consensus         5 GigRFayTplLP~M--------~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    5 GIGRFAYTPLLPLM--------QADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             hhHHHHHHhHhHHH--------HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            45566788999999        4556788899999999999999999999999999988899999999999999999999


Q ss_pred             ccC
Q 016048           98 SRS  100 (396)
Q Consensus        98 ~~~  100 (396)
                      .++
T Consensus        77 ~~~   79 (85)
T PF06779_consen   77 THS   79 (85)
T ss_pred             Hhc
Confidence            988

Note that many members are hypothetical proteins.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.32  E-value=8.2e-07  Score=79.52  Aligned_cols=185  Identities=14%  Similarity=0.122  Sum_probs=120.2

Q ss_pred             HHHHHHHHHhhccccccchhhhhhh-ccCCCCCcchhHHHHHHHHHHHH-hHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048           10 LFITIFVHCFSTSMVAPAITDVTMS-AVCPGRDECSLAIYLSGFQQAII-GLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus        10 l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~s~~~~g~~~s~~-~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      .+...|+..++..-..-....++.+ ...+.+++.+ ..........+- ..+++.+-.+...+.|+.|||++.+.+.++
T Consensus       309 t~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~-~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~  387 (538)
T KOG0252|consen  309 TAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYH-ELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFI  387 (538)
T ss_pred             HHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHH-HHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHH
Confidence            4455566656665555555555553 1222333321 111222222222 334455778889999999999999999999


Q ss_pred             hHHHHHHHHhccC-chhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh--
Q 016048           88 SIIPLAILAYSRS-RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI--  164 (396)
Q Consensus        88 ~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~--  164 (396)
                      +.+..+..+...+ ......+++...+..+++.-+-......+-+|.+|.+-|+..-|+..+..-.|.++|...-..+  
T Consensus       388 ~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~  467 (538)
T KOG0252|consen  388 MTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTD  467 (538)
T ss_pred             HHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhh
Confidence            9999998888766 2222333444444444333333445667789999999999999999988888888886554433  


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Q 016048          165 -------STSAAFQAATAGSIISAVYMRIFLPESVRDED  196 (396)
Q Consensus       165 -------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~  196 (396)
                             +.++.+++.+....+..+.. +++||+..+..
T Consensus       468 ~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~l  505 (538)
T KOG0252|consen  468 HNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSL  505 (538)
T ss_pred             ccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCH
Confidence                   56889999988887766554 77888876543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.24  E-value=0.00026  Score=65.71  Aligned_cols=104  Identities=9%  Similarity=0.063  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhcch-hHHHHHHHHHHHHHHHHHHh------------hh-hhHHHHHHHHHHhhh
Q 016048          278 ADLMVIAGIAGTISQLIMMPVLAPTVGEA-RLLSFGLLFGCVHMFLYSVA------------WS-SWVPYAAAVFSILSV  343 (396)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~i~~~~~~~~------------~~-~~~~~~~~~~~~~~~  343 (396)
                      -.....++++..+|+ .+..+. ..-++| +.+.+..+.-.+..-++...            .+ .+..+..+++++..|
T Consensus       310 ~i~~~~fNvgD~vGR-~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       310 IICFLLFNLFDWLGR-SLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHh-hhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            456677888888988 443222 111222 13333333332222222111            12 223344677788899


Q ss_pred             hhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhh
Q 016048          344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLA  383 (396)
Q Consensus       344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~  383 (396)
                      ......+.+..+.+++++|..+-.+....-.+|-.+|..+
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9889999999999999999888888888888888777665

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.21  E-value=1.3e-05  Score=62.44  Aligned_cols=104  Identities=16%  Similarity=0.173  Sum_probs=85.7

Q ss_pred             HHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCC
Q 016048           55 AIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNV  134 (396)
Q Consensus        55 s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~  134 (396)
                      ++.+....+.+++.+.+.+++|.|+.++++.+...+-.... +-++   .+.++.+-.+.|+ +.+..++..-.++.+..
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~-~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGF-GAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhh-hhHHhhHhhhHHHHHcC
Confidence            34455566667778889999999999999999887555443 4556   7888999999999 99999999999999999


Q ss_pred             CcccchhHHHHHHHhhhhhhHHHHHHHHH
Q 016048          135 PPGRRASVFGIFSGIVSGAFVCGTISARF  163 (396)
Q Consensus       135 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  163 (396)
                      ++++|++..+++-.....+.++|.++...
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=98.18  E-value=1.1e-05  Score=68.40  Aligned_cols=361  Identities=16%  Similarity=0.118  Sum_probs=179.0

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCC---------CCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCc
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCP---------GRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRK   78 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk   78 (396)
                      ...++.-.+.++++-+...+--+++.++.+.         ...+++.-  -.|.+.-.-.+..++-.+....+.||+---
T Consensus        15 ~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~--stg~VLLaDilPsL~iKl~~Pff~~rfpf~   92 (409)
T KOG3880|consen   15 VAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSV--STGAVLLADILPSLAIKLTAPFFIHRFPFG   92 (409)
T ss_pred             hHHHHHHHhcccceEeehhhhhhhhccccCCCCCCccccccccccccc--ccchhhhhhhhHHHHHHHhchhhhhhcccc
Confidence            3344555555566555555555555554330         12233322  235555556677777778888889987654


Q ss_pred             hhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHH
Q 016048           79 ALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGT  158 (396)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  158 (396)
                      .=..+..++.+.+..+.+++++   .++-+.+-.+..+ +.|.-...-.++ +..+|+.    ..+-++.+.+.+.++|.
T Consensus        93 ~Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSi-ssGlGEiTFL~l-ss~Y~~~----~i~~WSSGTGgAGliGa  163 (409)
T KOG3880|consen   93 FRIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASI-SSGLGEITFLAL-SSRYPSI----VIAGWSSGTGGAGLIGA  163 (409)
T ss_pred             hHHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhh-cCCcceeehhhh-hccCCCc----eeccccCCCCcchhhhh
Confidence            4445566778888999999999   8888888888888 666554333333 3333322    23334444555555554


Q ss_pred             HHHHHh------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhh--hhhhhhhhhhhhccCCChhH
Q 016048          159 ISARFI------STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISA--SCEESTKKLQVFKRLPSIDD  230 (396)
Q Consensus       159 ~~~~~~------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  230 (396)
                      .--..+      +.|...++...+.++.+...++.+++++....  ..+++..+....  ...+..+++.........++
T Consensus       164 ~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~--ptl~~~~~~~~~~~~~~~a~e~~sv~s~~~~~~e  241 (409)
T KOG3880|consen  164 SSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYS--PTLQPSTEIIPSQYLPFEAAEEKSVPSRRLGLKE  241 (409)
T ss_pred             hHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccC--CCcCccceeccCCCCcccccccccCchhhhcHHH
Confidence            332222      44777777777777766666666665443221  111110000000  00000011101111223333


Q ss_pred             HhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHh-hh-hccccc---cchhhHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 016048          231 MVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYL-KA-KFHFNK---NQFADLMVIAGIAGTISQLIMMPVLAPTVGE  305 (396)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  305 (396)
                      .++.+   +.+...++=.....+..+.++.-+...+ -+ ..|++.   .|+-++...+.++..+.+      =+-|+=+
T Consensus       242 ~~~~i---~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlYQlGVFiSR------SS~~~~~  312 (409)
T KOG3880|consen  242 TLKRI---KPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLYQLGVFISR------SSINLFT  312 (409)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheeeeeeEEEEe------ccceEEe
Confidence            33222   1222222223333333333333222211 10 113322   234455555554433333      1112222


Q ss_pred             hhHHHHHHHHHHHHHH------HHHHhhhhhHHHHHHHH-HHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHH
Q 016048          306 ARLLSFGLLFGCVHMF------LYSVAWSSWVPYAAAVF-SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANL  378 (396)
Q Consensus       306 ~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~  378 (396)
                      -+.+..-.++..+-+.      .+.+.++.+...+.+++ |...|..+.-.+--+.+-.++++|--+++.......+|-.
T Consensus       313 ~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~  392 (409)
T KOG3880|consen  313 MPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIF  392 (409)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHH
Confidence            2222222223222222      22334445544444444 5555566666666677778889999999999988888888


Q ss_pred             hhhhhhhhhhhc
Q 016048          379 VSPLAFSPLTGD  390 (396)
Q Consensus       379 ~~~~~~g~l~~~  390 (396)
                      ++..+.=++-++
T Consensus       393 lA~~lalplh~~  404 (409)
T KOG3880|consen  393 LAGLLALPLHNW  404 (409)
T ss_pred             HHHHHhccchhh
Confidence            887776555443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.13  E-value=1.9e-05  Score=53.55  Aligned_cols=70  Identities=21%  Similarity=0.235  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF  315 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  315 (396)
                      +-...++..........++|.|+++. |+|+.+.|.+.++..+..+++. ++.|.++||.++++........
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~-Gl~~~~iGil~~i~~~~~~~~~-pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQL-GLSPSQIGILSAIRPLIRFLAP-PLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhc-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCccHHHHHHHHH
Confidence            34456667777788889999999975 9999999999999999999999 7778999999988876655443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.11  E-value=0.0066  Score=55.71  Aligned_cols=256  Identities=11%  Similarity=0.090  Sum_probs=150.4

Q ss_pred             HHHHHHHHHhH-HHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhcc---------C-----------c----h-
Q 016048           49 LSGFQQAIIGL-GTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSR---------S-----------R----N-  102 (396)
Q Consensus        49 ~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~---------~-----------~----~-  102 (396)
                      ...++-+..-+ +.++..++.+++.+++.|.+++-.-...+....+++++.-         +           +    + 
T Consensus        62 ~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~  141 (509)
T COG3202          62 SISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWF  141 (509)
T ss_pred             hhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceee
Confidence            44555555555 5677888999999999999999988888777777776531         1           0    0 


Q ss_pred             ----hHHHHHHHHHHHhhhccchhhH-HHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHhh-hH---------
Q 016048          103 ----FFYAYYVLRTLTAMVCEGSIHC-LSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFIS-TS---------  167 (396)
Q Consensus       103 ----~~~~l~~~r~l~G~~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~-~~---------  167 (396)
                          +.|...+.....-+ -.+.... .-.....|.++.+|-.|..++++...+++..+++.+..+++ ++         
T Consensus       142 ili~~~Ws~s~~Yi~aEL-WgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~  220 (509)
T COG3202         142 ILIVGEWSYSLFYIMAEL-WGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKD  220 (509)
T ss_pred             eEeecchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHH
Confidence                01343344444444 2222222 45577889999999999999999999999998888777662 22         


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHH
Q 016048          168 ----AAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ  243 (396)
Q Consensus       168 ----~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (396)
                          ..+.+.....+++..+. .++.+...+++.             -......+++.++.+.+..+.++.+.++|.+..
T Consensus       221 ~~~~~~~~vi~~~~~i~~~l~-~~~~r~il~~~~-------------f~~~~~~kk~~~k~k~~~~~s~k~i~~SkyL~~  286 (509)
T COG3202         221 LLLQILFIVIVILGIIAILLY-RYINRNVLTDPL-------------FYLRAKKKKKKKKLKLGLIESFKMILRSKYLGA  286 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCcc-------------hhHHHhcccccccccCcHHHHHHHHHhhhHHHH
Confidence                22333333333333322 222211111110             000011122233444567788888888898888


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccc---cchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNK---NQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVH  319 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~  319 (396)
                      +.+...+.+.+...+....-.-.++.+--+.   +-.+.+....++...+.....++.+.+|.|-.....+.-++..++
T Consensus       287 ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit  365 (509)
T COG3202         287 IALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT  365 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            8888777777665555443333333222211   123445566677755666577788888888766555554444444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.06  E-value=0.00012  Score=68.65  Aligned_cols=121  Identities=17%  Similarity=0.093  Sum_probs=97.9

Q ss_pred             hhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhh
Q 016048          268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSH  346 (396)
Q Consensus       268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  346 (396)
                      +..++...+.+...+.+.++-+++. +..+.+.||++..+.+....++..+..++-....+.+..++ -++.|+..+..+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~-~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w  152 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQ-FPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW  152 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHH-hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence            4457778889999999999999999 67789999999666555555554444434444455555544 677799999999


Q ss_pred             hhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          347 PCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       347 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      |....++..-+.+++||.-+|+.+....+|+++|+++...+++
T Consensus       153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999988665

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.04  E-value=0.00053  Score=53.56  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccC
Q 016048          279 DLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVA  358 (396)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  358 (396)
                      .-+++......+.. ++.|.+.+++|.|+.+.++.+...+-.................+.|++.+..+...-.++.+..+
T Consensus        41 ~slai~Y~~~~~s~-l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISC-LFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHH-HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            34455566666777 66788999999999999999988876666554444444444778899999999999999999999


Q ss_pred             CccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          359 SNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       359 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ++.+++..++.-.+.+.+.++|..+.-.+.+.
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~  151 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIFQG  151 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999998888888777666544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.97  E-value=0.0001  Score=67.91  Aligned_cols=148  Identities=16%  Similarity=0.158  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhHHHHhhh-hccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcc-hhHHHHHHHHH
Q 016048          239 PTFSQAAIVAFLSNLADAGLQGSMMYYLKA-KFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGE-ARLLSFGLLFG  316 (396)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~  316 (396)
                      |.++...+..++....+.......-.|+++ ..+-+.+..|++.+...++..++. +..+++..|.+. |+.++.+.+++
T Consensus        34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~-liF~~Ws~k~~~~k~Pli~s~ii~  112 (488)
T KOG2325|consen   34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFS-LIFGIWSNKTGSVKKPLIVSFLIA  112 (488)
T ss_pred             HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcc-hhhcccccccCCcccCHHHHHHHH
Confidence            445556666666666555554445556665 136677778999999999999999 555788888775 77788888999


Q ss_pred             HHHHHHHHHhh-hhh-HHHHHHHH--HHhhh-hhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          317 CVHMFLYSVAW-SSW-VPYAAAVF--SILSV-FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       317 ~i~~~~~~~~~-~~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                      .++.++..... .+. ..+.+++.  ..|.+ .......+++++...+++|.++++..+....+|.++||.+...+
T Consensus       113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            89988874322 111 22222222  22333 34567889999988889999999999988888888888776544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.95  E-value=0.0002  Score=60.70  Aligned_cols=125  Identities=18%  Similarity=0.275  Sum_probs=89.8

Q ss_pred             HHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh-------hhHHHHH
Q 016048          263 MYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS-------SWVPYAA  335 (396)
Q Consensus       263 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~  335 (396)
                      ...+++++|+|.++...+-....++..++  +..|.+.||+|++.++.++.+...++...+.....       .|.....
T Consensus        25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G--~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~  102 (250)
T PF06813_consen   25 SPQLKSRLGYSQSQLNTLSTAGDIGSYFG--ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLF  102 (250)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHhhcc--HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHH
Confidence            34466788999999998888888888775  45689999999999999999999999888876432       1222221


Q ss_pred             HHH-HHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          336 AVF-SILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       336 ~~~-~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ..+ +.+....+........+.+| ++||++.|+.-....+++.+-..+...+++.
T Consensus       103 ~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen  103 LFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            111 22223334555566668898 6899999999999888888776666555543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.94  E-value=0.00029  Score=64.48  Aligned_cols=105  Identities=16%  Similarity=0.176  Sum_probs=79.2

Q ss_pred             hhhhHHHHHhHHHHHHHHhccCch------hHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcc---cchhHHHHHHHh
Q 016048           79 ALLTVPITLSIIPLAILAYSRSRN------FFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPG---RRASVFGIFSGI  149 (396)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~  149 (396)
                      |.+.++.++..+|.++..++....      ..+.++++-.+.++ |.|+.-|...++.+|-++++   +|.+.+.++..+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            567788888888888854432211      13678888889999 99999999999999999876   356677788899


Q ss_pred             hhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHH
Q 016048          150 VSGAFVCGTISARFI----STSAAFQAATAGSIISAVYM  184 (396)
Q Consensus       150 ~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~  184 (396)
                      .++|..+++.+..++    +|.+.|.+.++..++..+..
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            999999988776665    78999998888777665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.91  E-value=0.00013  Score=70.97  Aligned_cols=136  Identities=13%  Similarity=0.138  Sum_probs=106.2

Q ss_pred             hhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhh-hcchhHHHHHHHHHHHHHHHHHHhhhh---
Q 016048          254 ADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSFGLLFGCVHMFLYSVAWSS---  329 (396)
Q Consensus       254 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~---  329 (396)
                      +++++...+..|+.+.+|++...+..+........-+.. +++++++|+ +|+++.+..+.++..++..++......   
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~p-ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTP-LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            467778888899888889998887777777666666666 677899996 699999999999999998887764211   


Q ss_pred             -----h-HHHHHHHHHHhhhhhhhhhhHHHhhccCCc---cchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          330 -----W-VPYAAAVFSILSVFSHPCLRTIVSKQVASN---EQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       330 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                           . ....+.+..+|.+++-|...+...|.++++   ++-+.+.+.....++|+.+++.+.+++-+.
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~  150 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGD  150 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 1 122245557778888899999999988754   367788888899999999999999888744

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.90  E-value=3.5e-07  Score=86.08  Aligned_cols=109  Identities=13%  Similarity=0.049  Sum_probs=93.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh---hhhHHHH-HHHHHHhhhhhhhhhhH
Q 016048          276 QFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW---SSWVPYA-AAVFSILSVFSHPCLRT  351 (396)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~  351 (396)
                      +.+...+...++..+|. ++.|.+.||+|||+.+..+..+..++.++..+.+   +.+.... -++.|++.+...+....
T Consensus        47 ~~~~~~~~~~~g~~~G~-~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGA-LIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHhhhcccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            35778888999999999 7778999999999999999999999999998888   5555544 46678899999999999


Q ss_pred             HHhhccCCccchhHhhhHHHHHHHHHHhhhhhhh
Q 016048          352 IVSKQVASNEQGKAQGCISGICSFANLVSPLAFS  385 (396)
Q Consensus       352 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g  385 (396)
                      ++.|..|+++|+...++.+....+|..++..+.-
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~  159 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGY  159 (451)
T ss_pred             cccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999888888777766543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.89  E-value=0.0016  Score=58.50  Aligned_cols=125  Identities=11%  Similarity=0.089  Sum_probs=70.0

Q ss_pred             hhhhhhhHHHHhhhhcccc--ccc-hhhHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH------
Q 016048          255 DAGLQGSMMYYLKAKFHFN--KNQ-FADLMVI-AGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYS------  324 (396)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~------  324 (396)
                      +....+.+|-+..+..+-.  +.. .-..... +++...+|. ..+.++.++ +||.+ .+....-.+..-++.      
T Consensus       259 y~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~-~~a~~~~~~-~~r~l-~i~v~lR~lfiPlF~~cn~~~  335 (406)
T KOG1479|consen  259 YFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGS-ILAALLTWP-DPRKL-TIPVLLRLLFIPLFLLCNYPP  335 (406)
T ss_pred             eeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhh-hhhhcccCC-CCcee-hHHHHHHHHHHHHHHHhccCC
Confidence            3344456677766543221  122 2333344 677788886 444443332 33333 333333222222222      


Q ss_pred             ----HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhh
Q 016048          325 ----VAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPL  382 (396)
Q Consensus       325 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~  382 (396)
                          +.+..+......++++..|......+.+..+.+|++++..+-.+....-..|-..|..
T Consensus       336 ~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~  397 (406)
T KOG1479|consen  336 LPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL  397 (406)
T ss_pred             CCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence                2223445555778889999999999999999999888776666665555555555433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.75  E-value=0.0017  Score=57.33  Aligned_cols=122  Identities=11%  Similarity=0.010  Sum_probs=81.5

Q ss_pred             hhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhh
Q 016048          268 AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSH  346 (396)
Q Consensus       268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  346 (396)
                      +.+|++..+++.++........+.. .+.|.+.||+|||+.-+..+++..++++..-. ++...+++ =++-|+.....+
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g-~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~~~~L~~GRvlgGiaTSLLf  139 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFG-TFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SNYPVLLLGRVLGGIATSLLF  139 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHH
Confidence            4579999999999988888888888 66689999999999998888888888865444 34444444 355567777777


Q ss_pred             hhhhHH-Hhhc----cCCccchhHhhhHH-HHHHHHHHhhhhhhhhhhhcc
Q 016048          347 PCLRTI-VSKQ----VASNEQGKAQGCIS-GICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       347 ~~~~~~-~~~~----~p~~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      ...-++ +.|.    +|++..+...+... ..+.+-.+.+..++..+.|+.
T Consensus       140 S~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~  190 (354)
T PF05631_consen  140 SAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF  190 (354)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence            666555 3443    45444555555444 223344455555555555543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.73  E-value=0.00041  Score=64.57  Aligned_cols=118  Identities=19%  Similarity=0.222  Sum_probs=101.5

Q ss_pred             cchhHHHHHHHHHHHHhHHHHhhhhccc-ccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccc
Q 016048           42 ECSLAIYLSGFQQAIIGLGTLVMMPLVG-NLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEG  120 (396)
Q Consensus        42 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G-~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  120 (396)
                      .++.+..+.+...+.......+++.+.. .+...+|-|+.+..++..-.+...+.+++++   .|+.+....+.++  ..
T Consensus       271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~---~w~~~~~~v~~~~--~~  345 (463)
T KOG2816|consen  271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE---TWMMFAAGVVVAL--AG  345 (463)
T ss_pred             ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc---chhhhHHHHHHHh--hc
Confidence            5566667788777777777777777766 7788889999999999999999999999999   8888888888886  46


Q ss_pred             hhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048          121 SIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus       121 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      ...|...+.++.+.+++++|+++++......+..+++|.+-+.+
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            77899999999999999999999999999999999998876654

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.66  E-value=0.0093  Score=57.27  Aligned_cols=135  Identities=19%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHhHHHHhhhhccccccccc-CCchhhhHHHHHhHHHHHHHHhccC----------------------chhH
Q 016048           48 YLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLTVPITLSIIPLAILAYSRS----------------------RNFF  104 (396)
Q Consensus        48 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~  104 (396)
                      ....-..+.+.-......+.++.++|-| ||-+.+.++.++..++..+...+..                      ....
T Consensus        73 ~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~  152 (571)
T KOG1237|consen   73 GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQL  152 (571)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHH
Confidence            3444455555555666778899999976 9999999998888888544433211                      1123


Q ss_pred             HHHHHHHHHHhhhccchhhHHHHHHHhcCCCc---cc-c--hhHHHHHHHhhhhhhHHHHHHHHHh----hhHHHHHHHH
Q 016048          105 YAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP---GR-R--ASVFGIFSGIVSGAFVCGTISARFI----STSAAFQAAT  174 (396)
Q Consensus       105 ~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~---~~-r--~~~~~~~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~  174 (396)
                      ..++.+.-+..+ |.|+..|...++-+|-+++   ++ +  ...+.++....+.|..++-.+-.+.    +|.+.|.+..
T Consensus       153 ~~~~~~l~lia~-G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~  231 (571)
T KOG1237|consen  153 AVLYGALYLIAL-GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPT  231 (571)
T ss_pred             HHHHHHHHHhee-ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHH
Confidence            466777777787 8899999999999999882   22 2  2456677777788877776555443    8888888887


Q ss_pred             HHHHHHHHH
Q 016048          175 AGSIISAVY  183 (396)
Q Consensus       175 ~~~~~~~~~  183 (396)
                      +...+..++
T Consensus       232 ~~~~lai~i  240 (571)
T KOG1237|consen  232 VLNALAILI  240 (571)
T ss_pred             HHHHHHHHH
Confidence            776665443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.57  E-value=0.00061  Score=61.54  Aligned_cols=128  Identities=9%  Similarity=0.002  Sum_probs=88.6

Q ss_pred             HHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhh---hHHH-HHHH
Q 016048          262 MMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSS---WVPY-AAAV  337 (396)
Q Consensus       262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~-~~~~  337 (396)
                      ...|..+-|| +.+.+-+...++.+..+... +.+-|+.||+|-|....++....+++..+=.....+   .... -...
T Consensus        67 i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~g-f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~  144 (480)
T KOG2563|consen   67 INNYVNSFYG-SSSAADWLSMIYMVVSVPFG-FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTH  144 (480)
T ss_pred             HHHHHHHHhc-chHHHHHHHHHHHHHHHHHh-hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhH
Confidence            4445666667 56666788888888888888 666799999999999999999999987766554332   1111 1111


Q ss_pred             HH-Hhhhhhhhhhh----HHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          338 FS-ILSVFSHPCLR----TIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       338 ~~-~~~~~~~~~~~----~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .| ...+..++-..    -+..--+|+++|+++..+..+.+.+|..++-++-..+..+.
T Consensus       145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            11 11222333222    23334479999999999999999999999988877777655

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.44  E-value=0.0061  Score=53.52  Aligned_cols=130  Identities=16%  Similarity=0.155  Sum_probs=90.4

Q ss_pred             hhhHHHHhhhhccccc--cchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh--hhHHHH
Q 016048          259 QGSMMYYLKAKFHFNK--NQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS--SWVPYA  334 (396)
Q Consensus       259 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~  334 (396)
                      ....+.+..+. +.+.  ...+.......+...++. +..|.+.||.|||+....+.....++.+.......  .+....
T Consensus        22 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (338)
T COG0477          22 SPALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLI   99 (338)
T ss_pred             HHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence            33445554443 3333  356788888888888888 77789999999997777777654444444444443  222222


Q ss_pred             -HHHHHHhhhhhhhhhhHHHhhccCC-ccchhHhhhHHH-HHHHHHHhhhhhhhhhhhc
Q 016048          335 -AAVFSILSVFSHPCLRTIVSKQVAS-NEQGKAQGCISG-ICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       335 -~~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~  390 (396)
                       ....+.+.+...+...++..|..|+ ++|+...+.... ....+..++|.+.+.+.+.
T Consensus       100 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         100 LRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2334667777889999999999997 678999998888 5778888888777766654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.18  E-value=0.0035  Score=42.95  Aligned_cols=74  Identities=15%  Similarity=0.120  Sum_probs=61.0

Q ss_pred             hhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhH
Q 016048          256 AGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWV  331 (396)
Q Consensus       256 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  331 (396)
                      +.+...+|...+| .++|.++.+++-+.+.++..+|. +...++.++.++++.+..+.+...+..+.+++..+.+.
T Consensus         9 FayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GA-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen    9 FAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGA-LLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             HHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            4445566776655 49999999999999999999999 66678888878888999999999999999988776553

Note that many members are hypothetical proteins.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.16  E-value=0.043  Score=46.27  Aligned_cols=51  Identities=6%  Similarity=-0.106  Sum_probs=32.0

Q ss_pred             ccchhHHHHHHHhhhhhhHHH--HHHHH-----Hh--hhHHHHHHHHHHHHHHHHHHHHh
Q 016048          137 GRRASVFGIFSGIVSGAFVCG--TISAR-----FI--STSAAFQAATAGSIISAVYMRIF  187 (396)
Q Consensus       137 ~~r~~~~~~~~~~~~~g~~~g--~~~~~-----~~--~~~~~f~~~~~~~~~~~~~~~~~  187 (396)
                      |+|+........+.++|.++.  |.+-.     .+  .|++.+.+.+++..+-+++..++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566666666677777777664  33222     11  68888888887776665554343

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.16  E-value=0.0062  Score=56.86  Aligned_cols=132  Identities=17%  Similarity=0.247  Sum_probs=94.4

Q ss_pred             hhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhh-----cchhHHHHHHHHHHHHHHHHHHhhh----hh
Q 016048          260 GSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-----GEARLLSFGLLFGCVHMFLYSVAWS----SW  330 (396)
Q Consensus       260 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----g~~~~~~~~~~~~~i~~~~~~~~~~----~~  330 (396)
                      .-..+|+++.+|+++.+...+.....+--.+-.  +.|.++|-+     +||+.+.++.++..++...+...+.    ..
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp--~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKP--LYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhh--hHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            345667888899999998888777776666654  447899976     3566677777777666665555433    22


Q ss_pred             HH-HHHHHHHHhhhhhhhhhhHHHhhccC--CccchhHhhhHHHHHHHHHHhhhhhhhhhhhcccC
Q 016048          331 VP-YAAAVFSILSVFSHPCLRTIVSKQVA--SNEQGKAQGCISGICSFANLVSPLAFSPLTGDCRF  393 (396)
Q Consensus       331 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~  393 (396)
                      .. ...++..++.........+...|...  ++.+|..++.......+|+.++..+.|++.+....
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~  153 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP  153 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence            22 22344466777777888888888762  23488999999999999999999999999887643

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=0.013  Score=54.29  Aligned_cols=151  Identities=20%  Similarity=0.197  Sum_probs=96.3

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccc---cccCCchhhh
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLS---DKYGRKALLT   82 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~---Dr~Grk~~~~   82 (396)
                      +...+....+..++.........|....-..    ..-..+....++..-...++..++..+.+.+.   +|+||++.+.
T Consensus       241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~----~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~  316 (461)
T KOG3098|consen  241 KMLLLFPFFFYTGLETSFWISIYPTCISFTR----KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL  316 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccchhhhhhh----hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh
Confidence            3444444445554554444444444322210    11111223344444445566666666677776   4689999999


Q ss_pred             HHHHHhHHHHHHHHhccCc---------------hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHH
Q 016048           83 VPITLSIIPLAILAYSRSR---------------NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFS  147 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~  147 (396)
                      ++..+..+..++.-.+...               +.+....+.-++.|+ +.+......+.++.+.. +++|..+.++..
T Consensus       317 ~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~-~D~~~~t~~~~ii~~~~-~~~~~~~fsi~k  394 (461)
T KOG3098|consen  317 IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF-GDACFNTQRYVIIALLY-PDDRAQAFSLFK  394 (461)
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh-HHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence            9988888888777654221               125567788899999 99999999999999999 588888888888


Q ss_pred             HhhhhhhHHHHHHHH
Q 016048          148 GIVSGAFVCGTISAR  162 (396)
Q Consensus       148 ~~~~~g~~~g~~~~~  162 (396)
                      .-.+++..++-....
T Consensus       395 fyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  395 FYQSVASCVAFFFSP  409 (461)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            777777766544443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.01  E-value=0.024  Score=51.58  Aligned_cols=136  Identities=12%  Similarity=0.020  Sum_probs=100.8

Q ss_pred             hhhhhhhHHHHhhhh-ccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 016048          255 DAGLQGSMMYYLKAK-FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPY  333 (396)
Q Consensus       255 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  333 (396)
                      +--...++..|+.+. .|++.++...-.-+...-.-+..++....+.|.++.|++++.+.+...+...++.+..+.....
T Consensus        19 frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq   98 (412)
T PF01770_consen   19 FRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQ   98 (412)
T ss_pred             cCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHH
Confidence            355677888888886 7999888665544444444444445667899999999999999999988888888887766655


Q ss_pred             HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          334 AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      +.-++-........+.++++-..+|+++--++.+......-+|..++..++-.+...
T Consensus        99 ~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~  155 (412)
T PF01770_consen   99 LMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF  155 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            544433333344667788888888999888899988888888888887777666553

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.01  E-value=0.00094  Score=60.41  Aligned_cols=144  Identities=13%  Similarity=0.075  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhh----hcch-hHHHHHHH
Q 016048          240 TFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT----VGEA-RLLSFGLL  314 (396)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~g~~-~~~~~~~~  314 (396)
                      .+.....+.+...+....-.+++++|+++. |.+....+......-+.+.+.+ ++.|..+||    +||| +.+..+..
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQ-P~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQ-PLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceec-ccccccccccccccccccchHHHhhH
Confidence            334444445555555666678889998875 9999988899888999999999 666899996    5655 45666677


Q ss_pred             HHHHHHHHHHHhhhhh-------------HHHHHHHH-----HHhhhhhhhhhhHHHhhccCCccchh-HhhhHHHHHHH
Q 016048          315 FGCVHMFLYSVAWSSW-------------VPYAAAVF-----SILSVFSHPCLRTIVSKQVASNEQGK-AQGCISGICSF  375 (396)
Q Consensus       315 ~~~i~~~~~~~~~~~~-------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~~~g~-~~g~~~~~~~~  375 (396)
                      ...++++++++.....             ..+...++     =+....++....++..|+..++++-+ +++....+..+
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av  190 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV  190 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence            7778888877754311             11222222     23345677889999999998887777 99999999999


Q ss_pred             HHHhhhhhhh
Q 016048          376 ANLVSPLAFS  385 (396)
Q Consensus       376 g~~~~~~~~g  385 (396)
                      |+.+|-.+.+
T Consensus       191 GnvLGY~~g~  200 (498)
T KOG0637|consen  191 GNVLGYALGS  200 (498)
T ss_pred             cceeeeeccc
Confidence            9988755544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.40  E-value=0.00054  Score=65.40  Aligned_cols=137  Identities=12%  Similarity=0.045  Sum_probs=1.9

Q ss_pred             hhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh------
Q 016048          255 DAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS------  328 (396)
Q Consensus       255 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~------  328 (396)
                      ..++....-.-++++|+++..+.|.+.+.+-++..+..+++ .++.+|..|-+.+..+.++++++.+++.+..-      
T Consensus        18 ~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~v-sy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~   96 (539)
T PF03137_consen   18 VSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFV-SYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYS   96 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCc
Confidence            33333333445678899999999999999999999999444 58888888888899999999999887764210      


Q ss_pred             ----------------------------------------hhHHHH-----HHHHHHhhhhhhhhhhHHHhhccCCccch
Q 016048          329 ----------------------------------------SWVPYA-----AAVFSILSVFSHPCLRTIVSKQVASNEQG  363 (396)
Q Consensus       329 ----------------------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  363 (396)
                                                              ....+.     -++.|++....++...+++-|.+++++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~sp  176 (539)
T PF03137_consen   97 YEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSP  176 (539)
T ss_dssp             -------------------------------------------------------SSS----------------------
T ss_pred             cccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCc
Confidence                                                    000011     23346666778899999999999999999


Q ss_pred             hHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          364 KAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       364 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      ...|+...+..+|-.+|-.+++.+.+.+.
T Consensus       177 lYiGi~~~~~~lGPa~Gf~lg~~~L~~yv  205 (539)
T PF03137_consen  177 LYIGILYAMSILGPALGFLLGSFCLRIYV  205 (539)
T ss_dssp             -----------------------------
T ss_pred             cchhhhhHHhhccHHHHHHHHHHHHhcee
Confidence            99999999999999999888888877653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.38  E-value=0.001  Score=59.12  Aligned_cols=104  Identities=16%  Similarity=0.164  Sum_probs=3.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhh-cchhHHHHHHHHHHHH--HHHHH-H----------hhh-hhHHHHHHHHHHhhh
Q 016048          279 DLMVIAGIAGTISQLIMMPVLAPTV-GEARLLSFGLLFGCVH--MFLYS-V----------AWS-SWVPYAAAVFSILSV  343 (396)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~i~--~~~~~-~----------~~~-~~~~~~~~~~~~~~~  343 (396)
                      ..+..++++..+|+ .+..+..-+. ++|++ ....+.-.+.  ++++. .          ..+ .+..+..+++++..|
T Consensus       186 ~~fl~Fn~gD~iGR-~l~~~~~~~~~~~~~l-~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG  263 (309)
T PF01733_consen  186 VLFLLFNLGDFIGR-FLASWPRWPGPSPRWL-WILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG  263 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcc-hhcceeEecccccccH-HHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc
Confidence            34667899999999 5544422111 23333 3322222221  11111 1          112 223334667788889


Q ss_pred             hhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhh
Q 016048          344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAF  384 (396)
Q Consensus       344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~  384 (396)
                      ......+.+..+.+++++|..+-.+....-..|-.+|..+.
T Consensus       264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             ---HHHH----------------------------------
T ss_pred             hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888887777777777766543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.29  E-value=0.051  Score=49.49  Aligned_cols=110  Identities=15%  Similarity=0.156  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHH-----HHHHHhccCchhHHHHHHHHHHHhhhccch
Q 016048           47 IYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIP-----LAILAYSRSRNFFYAYYVLRTLTAMVCEGS  121 (396)
Q Consensus        47 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  121 (396)
                      ..+..+...+|.+|..++.--...+  |+  |+..+.+.+-..-.     ....-+.++   .|..++.-+..|+ .+|.
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGL-lGGa  351 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGL-LGGA  351 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-hhhH
Confidence            3466777778888877765433222  33  44444443332221     222334566   8888899999999 7788


Q ss_pred             hhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048          122 IHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus       122 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      .+.-....+.|-.|+++|...++....+-+.|.+++.+++-.+
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999998887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=96.26  E-value=0.12  Score=49.44  Aligned_cols=119  Identities=13%  Similarity=-0.003  Sum_probs=68.5

Q ss_pred             chhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhH---HHHHHHHhccC--chhHHHHHHHHHHHhhh
Q 016048           43 CSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSI---IPLAILAYSRS--RNFFYAYYVLRTLTAMV  117 (396)
Q Consensus        43 ~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~l~~~r~l~G~~  117 (396)
                      ++.+....+.+.+++.+|..+|+.+.+++.++.-|+.. .+-..+..   ++..+......  .......+..-++.++ 
T Consensus        45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-  122 (521)
T PRK03612         45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL-  122 (521)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            45566778999999999999999998888744332222 11111111   11111111111  0001222334455666 


Q ss_pred             ccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048          118 CEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus       118 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      ..|...|....+..+... ++-++..|.......+|.++|+++.+++
T Consensus       123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence            667777877776665332 3345667778888888888888777654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.18  E-value=0.22  Score=46.70  Aligned_cols=124  Identities=8%  Similarity=0.005  Sum_probs=79.7

Q ss_pred             hhhhcccc-----ccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh----h--------
Q 016048          266 LKAKFHFN-----KNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW----S--------  328 (396)
Q Consensus       266 ~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~----~--------  328 (396)
                      ++|....+     .+...++....-+...+.-.++.+++++|++|+++.-.........+.++++.-    +        
T Consensus        29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~  108 (472)
T TIGR00769        29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALA  108 (472)
T ss_pred             hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHH
Confidence            35555552     245556655554544444225567999999999987766666555555544330    0        


Q ss_pred             -------------------hhHHHHHHHH-HHhhhhhhh-hhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhh
Q 016048          329 -------------------SWVPYAAAVF-SILSVFSHP-CLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL  387 (396)
Q Consensus       329 -------------------~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  387 (396)
                                         .|......+. ........+ ..+++++|.+++++..+-.++....+++|..+++.+..++
T Consensus       109 ~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       109 DKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               0000011111 222233334 7889999999999999999999999999999999998887


Q ss_pred             hh
Q 016048          388 TG  389 (396)
Q Consensus       388 ~~  389 (396)
                      .+
T Consensus       189 ~~  190 (472)
T TIGR00769       189 SK  190 (472)
T ss_pred             HH
Confidence            64

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.73  E-value=0.13  Score=47.75  Aligned_cols=130  Identities=13%  Similarity=0.036  Sum_probs=92.5

Q ss_pred             hhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHH---hccCc----hhHHHHHHHHHHHhh
Q 016048           44 SLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA---YSRSR----NFFYAYYVLRTLTAM  116 (396)
Q Consensus        44 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~l~~~r~l~G~  116 (396)
                      +.+..+.|..-+...+..+.+.....++.+|+|..|.=+++...-.++..++.   +.++.    .+...++.+-.+.=+
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~  368 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI  368 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence            78889999999999999999999999999999998887777665444433332   22321    123444444444433


Q ss_pred             hccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHH
Q 016048          117 VCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFISTSAAFQAAT  174 (396)
Q Consensus       117 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~f~~~~  174 (396)
                       |-=++.....-++.|..|+++||...|.-....++-.++-..++-.++...-|....
T Consensus       369 -GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~lv  425 (432)
T PF06963_consen  369 -GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGWLV  425 (432)
T ss_pred             -HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcChHH
Confidence             333445577888999999999999999999888888887777666655444444333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=95.51  E-value=0.77  Score=44.02  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=76.2

Q ss_pred             HHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHH---HHHHH
Q 016048          246 IVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGC---VHMFL  322 (396)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~---i~~~~  322 (396)
                      +..++..++.........-.+...+|-+....+.+.+.+..+..+|. .+++++.++..++ ....-..+..   ++..+
T Consensus        21 ~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs-~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~l   98 (521)
T PRK03612         21 AAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGA-LLSKYLLRDAAAG-FVAVELLLALLGGLSALI   98 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence            33344444444445555555555568787777788887777777777 5555554332222 1111111111   11111


Q ss_pred             HHHhhhh----hH--HHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          323 YSVAWSS----WV--PYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       323 ~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      +......    ..  ....++.++..|...|....+..+... ++.|+..|-....+.+|+++|+++.++++-
T Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612         99 LYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            1111111    01  111333456667777776666554322 345677888889999999999999987764

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.21  E-value=0.044  Score=53.46  Aligned_cols=137  Identities=10%  Similarity=0.097  Sum_probs=107.9

Q ss_pred             hhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh---------
Q 016048          257 GLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW---------  327 (396)
Q Consensus       257 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~---------  327 (396)
                      ++....-.-++++++++.++.|++...+-++..+... ...+...|..|-+++..+.++++++.++..+..         
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~-fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~  192 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLII-FVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE  192 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhH-hHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence            4444444456788999999999999999999999884 446888888888999999999999988776421         


Q ss_pred             ----------h--------------------------------hhHHHH--HHHHHHhhhhhhhhhhHHHhhccCCccch
Q 016048          328 ----------S--------------------------------SWVPYA--AAVFSILSVFSHPCLRTIVSKQVASNEQG  363 (396)
Q Consensus       328 ----------~--------------------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  363 (396)
                                .                                ++..+.  -++.|+|....++...+++-|.+.+++..
T Consensus       193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Sp  272 (735)
T KOG3626|consen  193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSP  272 (735)
T ss_pred             hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCc
Confidence                      0                                111111  23447777778899999999999999999


Q ss_pred             hHhhhHHHHHHHHHHhhhhhhhhhhhcccCC
Q 016048          364 KAQGCISGICSFANLVSPLAFSPLTGDCRFS  394 (396)
Q Consensus       364 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~  394 (396)
                      ...|+...+..+|-++|-++++.+.+.+.+.
T Consensus       273 lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~  303 (735)
T KOG3626|consen  273 LYLGILYSMAILGPAIGFLLGSFCLKLYVDF  303 (735)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHeeecc
Confidence            9999999999999999999999988876553

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=94.29  E-value=2.4  Score=36.10  Aligned_cols=25  Identities=12%  Similarity=0.032  Sum_probs=12.6

Q ss_pred             HHHHHHHHHhhhhhhhhHHHHhhhh
Q 016048          245 AIVAFLSNLADAGLQGSMMYYLKAK  269 (396)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~  269 (396)
                      .+.........++.+..=..|.+++
T Consensus       184 G~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  184 GIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHhC
Confidence            3333344444566554444566665

The region concerned is approximately 280 residues long.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=93.67  E-value=1.1  Score=40.27  Aligned_cols=76  Identities=18%  Similarity=0.242  Sum_probs=47.6

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVP   84 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~   84 (396)
                      +....++.+.++...+.-+---....++.+..       +.|....+.-..+-....++..++.|...|+..|+|++...
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~-------gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~   99 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLG-------GNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTW   99 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHc-------CceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHH
Confidence            34455677777777776665555555544432       11112233333334455677788899999999999998876


Q ss_pred             HHH
Q 016048           85 ITL   87 (396)
Q Consensus        85 ~~~   87 (396)
                      +.+
T Consensus       100 L~l  102 (503)
T KOG2601|consen  100 LLL  102 (503)
T ss_pred             Hhh
Confidence            655

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.54  E-value=1  Score=42.17  Aligned_cols=148  Identities=16%  Similarity=0.121  Sum_probs=90.1

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHH-HHHHHHHHHHhHHHHhhhhcccccccccCCc-hhhhHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAI-YLSGFQQAIIGLGTLVMMPLVGNLSDKYGRK-ALLTVP   84 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~-~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk-~~~~~~   84 (396)
                      ++...+..++.++..-.+.|.+.......      +.+.+. +..-....++.++-.+|-.+..+.. .-++| +.+.+.
T Consensus       271 i~~~~~~vf~~F~vTL~vFPgv~~~i~~~------~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~  343 (437)
T TIGR00939       271 VWLLAFSVVFVFTVTLSVFPAITTAVTSS------GLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPIL  343 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhcCceEEEeecc------CCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHH
Confidence            44456666666655555555554332221      111111 3556777888899998887554431 11222 133333


Q ss_pred             HHHhHHH---HHHHHhcc------CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhH
Q 016048           85 ITLSIIP---LAILAYSR------SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFV  155 (396)
Q Consensus        85 ~~~~~~~---~~~~~~~~------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  155 (396)
                      .+.-.+.   .++|..-+      -.++-+..++.-++.|+ ..|-.......+..+..++++|..+-.+......+|..
T Consensus       344 s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl-tnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~  422 (437)
T TIGR00939       344 SFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF-SNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLA  422 (437)
T ss_pred             HHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH-hhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3333222   23332221      00125677778999999 88988888999999999999999888888888888888


Q ss_pred             HHHHHHH
Q 016048          156 CGTISAR  162 (396)
Q Consensus       156 ~g~~~~~  162 (396)
                      +|..++-
T Consensus       423 ~Gs~l~~  429 (437)
T TIGR00939       423 LGAVLSF  429 (437)
T ss_pred             HHHHHHH
Confidence            8876653

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.72  E-value=0.61  Score=39.76  Aligned_cols=133  Identities=17%  Similarity=0.158  Sum_probs=83.6

Q ss_pred             HHHHHHHHhHHHHhhhhcccccccccCCc--hhhhHHHHHhHHHHHHHH----hccCchhHHHHHHHHHHHhhhccchhh
Q 016048           50 SGFQQAIIGLGTLVMMPLVGNLSDKYGRK--ALLTVPITLSIIPLAILA----YSRSRNFFYAYYVLRTLTAMVCEGSIH  123 (396)
Q Consensus        50 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~r~l~G~~~~~~~~  123 (396)
                      -|.+.+.+.++.++|+-+..++..|-..|  +.+.+..++.+....+..    .+++..+...-+++..+.-. +.|..+
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~-cvGlfw  362 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEA-CVGLFW  362 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHH-HHhhcc
Confidence            38899999999999999888887765543  455555555444443322    33333223333455555555 678899


Q ss_pred             HHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHH----HHHhhhHHHHHHHHHHHHHHHHH
Q 016048          124 CLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTIS----ARFISTSAAFQAATAGSIISAVY  183 (396)
Q Consensus       124 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~----~~~~~~~~~f~~~~~~~~~~~~~  183 (396)
                      |....+-.+..|+++|...+.++..-.++=..++-..    +...+-|..|-+..+...+..+.
T Consensus       363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            9999999999999999988887765444333332111    01124467777766665555443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=92.46  E-value=2.1  Score=38.64  Aligned_cols=141  Identities=11%  Similarity=0.038  Sum_probs=75.0

Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhh-----hhcchhH-HHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAP-----TVGEARL-LSF  311 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~g~~~~-~~~  311 (396)
                      ++++..+...+..+...... ...+|..++.. |.|-...+.......=.  --. ++...+.|     |+||||. +.-
T Consensus        30 ~~~illLl~LYllQGiP~GL-~~~iP~lL~ak-~vSyt~~a~fS~ay~P~--sLK-llWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGL-IGAIPLLLQAK-GVSYTSQAIFSFAYWPF--SLK-LLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhH-hhhhHHHhcCC-CcchhhhhhhhhhhhHH--HHH-HHHHhhhHHHHHHhhccccceeee
Confidence            35566666666666665444 44788888754 66655433332221111  111 22334556     8998775 344


Q ss_pred             HHHHHHHHHHHHHHhhhhh---------HHHH---HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHh
Q 016048          312 GLLFGCVHMFLYSVAWSSW---------VPYA---AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLV  379 (396)
Q Consensus       312 ~~~~~~i~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~  379 (396)
                      +..+.+..+.++....+.+         ....   .+++-+..+.-..+...+.-.+..+++.|-++.........|.++
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL  184 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL  184 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence            4555555555555432211         1111   223333344444566777777788888877766555555566665


Q ss_pred             hhhh
Q 016048          380 SPLA  383 (396)
Q Consensus       380 ~~~~  383 (396)
                      +-.+
T Consensus       185 ~~~i  188 (510)
T KOG3574|consen  185 GNVV  188 (510)
T ss_pred             hcce
Confidence            5443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=92.31  E-value=7.1  Score=34.61  Aligned_cols=71  Identities=11%  Similarity=0.042  Sum_probs=49.5

Q ss_pred             HHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCC
Q 016048           60 GTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVP  135 (396)
Q Consensus        60 ~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~  135 (396)
                      .-+..+.+.+.+.+++|-|..+.++.........    .+-.+.++.++-.-...|+ +.+..+..--+|+++...
T Consensus        70 ~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA----~Nl~pr~~tlVPa~~~~G~-aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   70 SLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA----ANLEPRYETLVPAGLVLGM-AAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hhcchhHHhhccHHHhhcc-ccccccccCcceecHHHH
Confidence            3344455555889999999999988776654322    2222337888888999999 888888777777766544

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.18  E-value=0.011  Score=49.49  Aligned_cols=56  Identities=18%  Similarity=0.181  Sum_probs=35.8

Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQ  292 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  292 (396)
                      ++-.+....+.+.+.-........+++.|..+..+++.+..+++-++..+.....+
T Consensus       199 ~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS  254 (412)
T KOG4830|consen  199 GHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVS  254 (412)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHH
Confidence            34556666666666655555566778888877767776665666555555555555

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=89.72  E-value=1.9  Score=39.50  Aligned_cols=85  Identities=11%  Similarity=0.074  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhh---------hHHHH-HHHHHHhhhhhhhhhhHHHhhccCCc---cchhHhhhHHHHH
Q 016048          307 RLLSFGLLFGCVHMFLYSVAWSS---------WVPYA-AAVFSILSVFSHPCLRTIVSKQVASN---EQGKAQGCISGIC  373 (396)
Q Consensus       307 ~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~  373 (396)
                      +++..+.++..++.+++.....+         ....+ ..++++|.|+.-|...++..|.++++   +|.+.+..+....
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56778888888888885554321         22333 56678999999999999999999866   4677888889999


Q ss_pred             HHHHHhhhhhhhhhhhcc
Q 016048          374 SFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       374 ~~g~~~~~~~~g~l~~~~  391 (396)
                      ++|..+++.+.+++-++.
T Consensus        82 n~G~~~~~~~~~~i~~~~   99 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNY   99 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS
T ss_pred             hhhhHhhcccchhhcccc
Confidence            999999999999887653

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=88.22  E-value=5.4  Score=36.53  Aligned_cols=131  Identities=14%  Similarity=0.193  Sum_probs=85.0

Q ss_pred             cccccchhhhhhhccCCCCCcchhHHHHHHHHHHH-HhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHH----
Q 016048           22 SMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAI-IGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILA----   96 (396)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~-~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~----   96 (396)
                      .....+.|-+..+.    +.+...+.+..-+.... +.+...+|.+...++-++= ||.. .+..++-.+..-+..    
T Consensus       260 ~VTLsiFPg~~~~~----~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~  333 (406)
T KOG1479|consen  260 FVTLSIFPGFCSEV----KSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNY  333 (406)
T ss_pred             eeeeEecchhhccc----ccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhcc
Confidence            34444566665553    22222345666777777 8999999988777776653 3333 333333333222222    


Q ss_pred             -----hccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           97 -----YSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        97 -----~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                           +-.+   -++++..-.+.|+ ..|-.....+.+..+-.|++++..+-.+.......|...|..++.
T Consensus       334 ~~~~v~~~~---~~~~~~l~~~lgl-snGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  334 PPLPVVFES---DGWFIFLMSLLGL-SNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             CCCCceecC---chHHHHHHHHHHh-ccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence                 1233   5778888999999 889888889999999999888877777777777777766665543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=87.84  E-value=13  Score=36.25  Aligned_cols=145  Identities=16%  Similarity=0.103  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhh-cchhHHHHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLSFGLLFGCVHMFL  322 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~i~~~~  322 (396)
                      .+....+-..++++....+..|+.+.++.+...+.-......-...... +.+++++|.+ ||-+++.++.++..+++.+
T Consensus        42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~-l~g~~laD~f~gry~tI~~~s~i~~~G~~~  120 (571)
T KOG1237|consen   42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLP-LLGAFLADSFLGRYFTINIGSLISLLGLFG  120 (571)
T ss_pred             HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3444455566667777778888888888887666655555555555555 6778999974 8989999988888888666


Q ss_pred             HHHhhhhh-------------------------HHHH-HHHHHHhhhhhhhhhhHHHhhccCCc----c--chhHhhhHH
Q 016048          323 YSVAWSSW-------------------------VPYA-AAVFSILSVFSHPCLRTIVSKQVASN----E--QGKAQGCIS  370 (396)
Q Consensus       323 ~~~~~~~~-------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~----~--~g~~~g~~~  370 (396)
                      +.......                         .... ..+..+|.++.-|...++-.|.++++    .  +..-+....
T Consensus       121 lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~y  200 (571)
T KOG1237|consen  121 LTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFY  200 (571)
T ss_pred             HHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHH
Confidence            65432110                         1111 22334567777899999999988832    2  235666677


Q ss_pred             HHHHHHHHhhhhhhhhhhh
Q 016048          371 GICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       371 ~~~~~g~~~~~~~~g~l~~  389 (396)
                      ...+.|..++-.+.-++-|
T Consensus       201 f~~~~g~l~a~t~~vyiq~  219 (571)
T KOG1237|consen  201 FSQNGGALLAQTVLVYIQD  219 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhh
Confidence            7777888777766666543

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=84.38  E-value=24  Score=29.91  Aligned_cols=23  Identities=13%  Similarity=0.085  Sum_probs=14.4

Q ss_pred             HHhhhhhhcchhHHHHHHHHHHH
Q 016048          296 MPVLAPTVGEARLLSFGLLFGCV  318 (396)
Q Consensus       296 ~~~l~~~~g~~~~~~~~~~~~~i  318 (396)
                      +.+++.|+..|++...+-.++.+
T Consensus       260 Gk~lAskIS~rtVt~~ggi~Fi~  282 (294)
T KOG2881|consen  260 GKYLASKISVRTVTLIGGILFII  282 (294)
T ss_pred             hHHHhhhheeEEEEEecchhHHH
Confidence            35677888877766655444433

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=84.24  E-value=5.2  Score=35.09  Aligned_cols=74  Identities=14%  Similarity=0.101  Sum_probs=57.1

Q ss_pred             HhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh
Q 016048           87 LSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI  164 (396)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~  164 (396)
                      ++.+.-.+..+.++   +|..++.-+.-|+ -+|..++-..--+.+-.++++|..+++....+-++|..++..++-.+
T Consensus       328 ~ff~~~a~~~ftps---i~ivf~lI~~EGL-lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  328 LFFLLQAWYWFTPS---IWIVFALILFEGL-LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHHHHHHhccH---HHHHHHHHHHHhh-cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            34444455667788   8888888899999 55666766666677777889999999999999999988887776544

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=82.72  E-value=0.49  Score=42.06  Aligned_cols=150  Identities=18%  Similarity=0.180  Sum_probs=3.7

Q ss_pred             cchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHH-HHHHHHhHHHHhhhhcccccccc-cCCchhhhH
Q 016048            6 GVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSG-FQQAIIGLGTLVMMPLVGNLSDK-YGRKALLTV   83 (396)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~~~~   83 (396)
                      +.+...+..++..+..-...|.+........   ..+  .+.+... ....++.++-.+|..+.++.-=+ -.+|+.. +
T Consensus       144 ~i~~~~~~i~~~f~vTl~~FP~it~~v~s~~---~~~--~~~~f~pv~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~  217 (309)
T PF01733_consen  144 KIWPYALSIFLVFFVTLSVFPGITSAVQSSN---NPD--WSSYFVPVVLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-I  217 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhheeeeccceeeeeeccc---cCC--CccHHHHHHHHHHHHHHHHhcchhcceeEecccccccHH-H
Confidence            3445556666666666666666633322211   111  1112222 45667888888888877664211 0244433 3


Q ss_pred             HHHHhHHH---HHHHHhccC-------chhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhh
Q 016048           84 PITLSIIP---LAILAYSRS-------RNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGA  153 (396)
Q Consensus        84 ~~~~~~~~---~~~~~~~~~-------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  153 (396)
                      ..+.-.+.   .++|-.-++       .++-+..++.-++.|+ ..|-..+..+.+..+..++++|..+-.+.......|
T Consensus       218 ~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~-TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~G  296 (309)
T PF01733_consen  218 LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGF-TNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFG  296 (309)
T ss_dssp             --------------------------------------------------HHHH--------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH-ccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            32332222   222211111       0114667788889999 899988999999999999999988888888888888


Q ss_pred             hHHHHHHHH
Q 016048          154 FVCGTISAR  162 (396)
Q Consensus       154 ~~~g~~~~~  162 (396)
                      ..+|..++-
T Consensus       297 l~~Gs~ls~  305 (309)
T PF01733_consen  297 LFIGSVLSF  305 (309)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            888776653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	396
2cfq_A	417	Lactose permease; transport, transport mechanism,	9e-06

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 46/335 (13%), Positives = 87/335 (25%), Gaps = 33/335 (9%)

Query: 51  GFQQAIIGLGTLVMMPLVGNLSDKYG-RKALLTVPITLSIIPLAILAYSRSRNFFYAYYV 109
           G   A I L +L+  PL G LSDK G RK LL +   + ++      +       Y   V
Sbjct: 46  GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105

Query: 110 LRTLTAMV---CEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF--- 163
              +  +    C  +      A++       R    FG         +  G         
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVS--RRSNFEFGRARMFGCVGWALGASIVGIMFT 163

Query: 164 ISTSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFK 223
           I+    F   +  ++I AV +     +                  + S       +    
Sbjct: 164 INNQFVFWLGSGCALILAVLLFFAKTD------------------APSSATVANAVGANH 205

Query: 224 RLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH---FNKNQFADL 280
              S+   + L +  P     ++     +            +  + F         F  +
Sbjct: 206 SAFSLKLALELFR-QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYV 264

Query: 281 MVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSI 340
             +  +      +   P++   +G    L        V +   S A S+          +
Sbjct: 265 TTMGELLNASI-MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHM 323

Query: 341 LSV-FSHPCLRTIVSKQVASNEQGKAQGCISGICS 374
             V F        ++ Q                  
Sbjct: 324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	396
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.48
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.47
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.44
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.44
2xut_A	524	Proton/peptide symporter family protein; transport	99.4
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.32
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.3

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=3.4e-39  Score=301.57  Aligned_cols=365  Identities=12%  Similarity=0.062  Sum_probs=292.1

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      +..+++..++..++.....+.+|.+        .+++ .+..+.|++.+++.++..++++++|+++||+|||++++.+.+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           30 FLGIFFGYAAYYLVRKNFALAMPYL--------VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHT--------TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            4455677778888888888998888        4445 666788999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHh----ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHH
Q 016048           87 LSIIPLAILAY----SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISAR  162 (396)
Q Consensus        87 ~~~~~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  162 (396)
                      +.+++.+++++    +++   ++.++++|+++|+ +.+...+...+++.|++|+++|++++++.+...++|.+++|.+++
T Consensus       101 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    888   8999999999999 889999999999999999999999999999999999999999987


Q ss_pred             Hh----h-hHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHH-hhhhc
Q 016048          163 FI----S-TSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDM-VHLLK  236 (396)
Q Consensus       163 ~~----~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  236 (396)
                      .+    + ||+.|++.+++.++..++.++.+||+|++.+.++.-++.++    .+++. +  ++++++.+.++. .+...
T Consensus       177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~--~~~~~~~~~~~~~~~~~~  249 (451)
T 1pw4_A          177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND----YPDDY-N--EKAEQELTAKQIFMQYVL  249 (451)
T ss_dssp             HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------------CCTHHHHHHTS
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc----ccccc-h--hhhhcccccccchHHHHH
Confidence            64    6 99999999998888877777888988765432110000000    00000 0  011111222332 23344


Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhh--cchhHHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTV--GEARLLSFGLL  314 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~~~~  314 (396)
                      ++|.++...+..++..........++|.|+++.+|+++.+.+...+...++.+++. ++.+++.||+  ++|+.+..+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~  328 (451)
T 1pw4_A          250 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFM  328 (451)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHH
Confidence            68888888888888888888899999999999889999999999999999999999 7778999999  99988877776


Q ss_pred             HHH-HHHHHHHHhh--hhhHHH-HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHH-HHHhhhhhhhhhhh
Q 016048          315 FGC-VHMFLYSVAW--SSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSPLTG  389 (396)
Q Consensus       315 ~~~-i~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~  389 (396)
                      +.. ++++++....  +.+... ...+.+++.+...+...++..|.+|+++||+++|+.+...++ |..++|.+.|.+.|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~  408 (451)
T 1pw4_A          329 TLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  408 (451)
T ss_dssp             HHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665 6666555543  233222 244557777777888899999999999999999999999999 99999999999998


Q ss_pred             ccc
Q 016048          390 DCR  392 (396)
Q Consensus       390 ~~~  392 (396)
                      ...
T Consensus       409 ~~g  411 (451)
T 1pw4_A          409 FFG  411 (451)
T ss_dssp             SSC
T ss_pred             hcC
Confidence            753

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=7.4e-38  Score=291.40  Aligned_cols=347  Identities=12%  Similarity=0.092  Sum_probs=287.5

Q ss_pred             chHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHH
Q 016048            7 VSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPIT   86 (396)
Q Consensus         7 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~   86 (396)
                      +..++...++..+..+...+.+|.+.        ++++.+..+.|++.+++.++..+++++.|+++||+|||++++.+.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~   99 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQ--------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF   99 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence            33456667777777788888888873        3456777899999999999999999999999999999999999999


Q ss_pred             HhHHHHHHH---HhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHH
Q 016048           87 LSIIPLAIL---AYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARF  163 (396)
Q Consensus        87 ~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  163 (396)
                      +.+++.+++   +++++   ++.++++|++.|+ +.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.
T Consensus       100 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A          100 LYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999   88899   9999999999999 8999999999999999999999999999999999999999999877


Q ss_pred             hh------------------------------hHHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccccccccchhhhhhhh
Q 016048          164 IS------------------------------TSAAFQAATAGSIISAVYMRI-FLPESVRDEDLYTPILSSKAEISASC  212 (396)
Q Consensus       164 ~~------------------------------~~~~f~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~l~~~~~~~~~~~  212 (396)
                      +.                              ||+.|++.+++..+..++.++ ..||++++++++              
T Consensus       176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--------------  241 (438)
T 3o7q_A          176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD--------------  241 (438)
T ss_dssp             HHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC--------------
T ss_pred             HHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--------------
Confidence            63                              999998887777665554422 234433321100              


Q ss_pred             hhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHH-hhhhccccccchhhHHHHHHHHHHHH
Q 016048          213 EESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYY-LKAKFHFNKNQFADLMVIAGIAGTIS  291 (396)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~  291 (396)
                                +++.+.++..+.+.++|.++...+..++..........++|.| +++.+|+++.+.+...+...++.+++
T Consensus       242 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  311 (438)
T 3o7q_A          242 ----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIG  311 (438)
T ss_dssp             ----------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHH
Confidence                      0011122222223467888888888888888888888999999 88888999999999999999999999


Q ss_pred             HHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHH
Q 016048          292 QLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISG  371 (396)
Q Consensus       292 ~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  371 (396)
                      . ++.+++.||++||+.+..+..+..++.+++...++.+......+.+++.+...|...++..|.+|++ ++++.++.. 
T Consensus       312 ~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  388 (438)
T 3o7q_A          312 R-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-  388 (438)
T ss_dssp             H-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-
T ss_pred             H-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-
Confidence            9 7778999999999999999999888888888777666555566678888888999999999999966 888988877 


Q ss_pred             HHHHHHHhhhhhhhhhhhccc
Q 016048          372 ICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       372 ~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      .+.+|+.++|.+.|.+.|..+
T Consensus       389 ~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          389 MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            778999999999999999865

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.6e-35  Score=279.70  Aligned_cols=367  Identities=15%  Similarity=0.114  Sum_probs=257.3

Q ss_pred             HHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHH
Q 016048           12 ITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIP   91 (396)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~   91 (396)
                      ++.++.+++.+++.+.+|.+..+...+...+.+.+..+.|++.+++.+|.++|++++|+++||+|||++++++.+++.++
T Consensus        19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~   98 (491)
T 4gc0_A           19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS   98 (491)
T ss_dssp             HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            34566677778888888877665433334445677788999999999999999999999999999999999999999999


Q ss_pred             HHHHHh------------------ccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhh
Q 016048           92 LAILAY------------------SRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGA  153 (396)
Q Consensus        92 ~~~~~~------------------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  153 (396)
                      .+++++                  +++   ++.++++|+++|+ +.|...+....+++|+.|+++|++..+..+.....|
T Consensus        99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g  174 (491)
T 4gc0_A           99 GVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG  174 (491)
T ss_dssp             HHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence            999984                  667   9999999999999 999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHh------------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc----c---cccccccchhhhhhhhhh
Q 016048          154 FVCGTISARFI------------STSAAFQAATAGSIISAVYMRIFLPESVRDE----D---LYTPILSSKAEISASCEE  214 (396)
Q Consensus       154 ~~~g~~~~~~~------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~----~---~~~~l~~~~~~~~~~~~~  214 (396)
                      .++++.++...            .||..+.+..+..++..+ ..+++||+|+.-    +   +++.+++...++..+++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~  253 (491)
T 4gc0_A          175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV  253 (491)
T ss_dssp             HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence            99998887653            356666666665555444 457899998631    1   122222222221111111


Q ss_pred             hh--hhhhhhccCCChhHHhhhhcCChhHHHHHHHHHHH-HHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHH
Q 016048          215 ST--KKLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLS-NLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTIS  291 (396)
Q Consensus       215 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  291 (396)
                      .+  +..+++++......    ..+.+..........+. .........+.+.+. +..+.+...........++...++
T Consensus       254 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  328 (491)
T 4gc0_A          254 QEIKHSLDHGRKTGGRLL----MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-KTLGASTDIALLQTIIVGVINLTF  328 (491)
T ss_dssp             HHHHHHHHHHHHHTTHHH----HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhHHH----HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-HhcCCCccchhhHHHHHHHHHHHH
Confidence            11  11111111111111    12333333333333333 333334444444444 444777766677777788888888


Q ss_pred             HHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhhh----hhHHHH-HHHHHHh-hhhhhhhhhHHHhhccCCccchhH
Q 016048          292 QLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWS----SWVPYA-AAVFSIL-SVFSHPCLRTIVSKQVASNEQGKA  365 (396)
Q Consensus       292 ~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~p~~~~g~~  365 (396)
                      . ++.+++.||+|||+.+..+.....++++.+.....    .+.... ..+...+ .....|..+.+.+|.+|++.|+++
T Consensus       329 ~-~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~  407 (491)
T 4gc0_A          329 T-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA  407 (491)
T ss_dssp             H-HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHH
T ss_pred             H-HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHH
Confidence            8 77789999999999999988888888777654322    111222 2222222 334457788999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhhhhhhhh
Q 016048          366 QGCISGICSFANLVSPLAFSPLTG  389 (396)
Q Consensus       366 ~g~~~~~~~~g~~~~~~~~g~l~~  389 (396)
                      .|+.+..+++++.+++.+.+.+.+
T Consensus       408 ~g~~~~~~~~~~~i~~~~~p~l~~  431 (491)
T 4gc0_A          408 LAIAVAAQWLANYFVSWTFPMMDK  431 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988877654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=6.8e-37  Score=279.09  Aligned_cols=341  Identities=11%  Similarity=0.067  Sum_probs=278.2

Q ss_pred             hHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHH
Q 016048            8 SHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITL   87 (396)
Q Consensus         8 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~   87 (396)
                      ..++...++..++.+...|.+|.+        .++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   74 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM--------ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI   74 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--------HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH--------HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            456778888889999999999988        445677888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh---
Q 016048           88 SIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI---  164 (396)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~---  164 (396)
                      .+++.++.+++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|+++++..+...++|..++|.+++.+   
T Consensus        75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           75 FMLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            9999999999988   9999999999999 88999999999999999999999999999999999999999999876   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHH
Q 016048          165 -STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQ  243 (396)
Q Consensus       165 -~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (396)
                       +||+.|++.+++.++..+...+.+||++++++++                       ++.++++++.+    ++|.++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~----~~~~~~~  203 (375)
T 2gfp_A          151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR-----------------------TRLLTSYKTLF----GNSGFNC  203 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-----------------------CCTTTCSTHHH----HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-----------------------ccHHHHHHHHh----cCcchHH
Confidence             8999999988888776665556777765543310                       11122334433    4677888


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHH-HHHHHH-
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLF-GCVHMF-  321 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~i~~~-  321 (396)
                      ..+..++..........+.|.|+++.+|+++.+.+.......++.+++. .+.+++.||++++.  ..+... ...+.. 
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~~~--~~~~~~~~~~~~~~  280 (375)
T 2gfp_A          204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTLM--WQSVICCLLAGLLM  280 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHHHH--HHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            8888888888888888899999998889999999999999999999999 77789999988732  222222 222222 


Q ss_pred             -HHHHh--hhhhHHH-HHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 016048          322 -LYSVA--WSSWVPY-AAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       322 -~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                       .....  .+.+... ...+.+++.+...+...++..|..| ++||++.|+.+..+++|..++|.+.|.+.+..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  353 (375)
T 2gfp_A          281 WIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG  353 (375)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred             HHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             22221  2333332 3555678888889999999999998 89999999999999999999999999987753

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=2.5e-33  Score=264.72  Aligned_cols=375  Identities=12%  Similarity=0.031  Sum_probs=273.5

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccc-cCCchhhhH
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDK-YGRKALLTV   83 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~~~~   83 (396)
                      +.++.++...+...++.....+.++.+..+..  .++|++.+..+.|++.+++.++..+++++.|+++|| +|||+++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~   90 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW   90 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            45666777888888888888788888877631  134578888999999999999999999999999999 899999999


Q ss_pred             HHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCccc--chhHHHHHHHhhhhhhHHHHHHH
Q 016048           84 PITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGR--RASVFGIFSGIVSGAFVCGTISA  161 (396)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~  161 (396)
                      +.++.+++.++++++++   ++.++++|+++|+ +.+...+...++++|++|+++  |+.+++.++...++|..++|.++
T Consensus        91 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A           91 GGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   8999999999999 889999999999999999988  77788889999999999999998


Q ss_pred             HHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc--ccccccchhhhhhhh---------------------hh
Q 016048          162 RFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDL--YTPILSSKAEISASC---------------------EE  214 (396)
Q Consensus       162 ~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~l~~~~~~~~~~~---------------------~~  214 (396)
                      +.+    +||+.|++.++..++..+...+..|+..+++++  ++..++.+.+...+.                     +.
T Consensus       167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~  246 (491)
T 4aps_A          167 GAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL  246 (491)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence            875    899999998777766655544443433221110  000000000000000                     00


Q ss_pred             hhh----------------hhhhhccCCChhHHhhhhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccccchh
Q 016048          215 STK----------------KLQVFKRLPSIDDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFA  278 (396)
Q Consensus       215 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  278 (396)
                      ++.                ....+++..+..+    .++........+...+....+.....+++.|.++..+.+..+.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (491)
T 4aps_A          247 PAYINLLTIVAIAIPVFYFAWMISSVKVTSTE----HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS  322 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHC----------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG
T ss_pred             ccchhhhhHHHHHHHHHHHHHHhhcccccHHH----HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH
Confidence            000                0000000000001    11222344445555556666677778889999988888877788


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhcchhHHH-----HHHHHHHHHHHHHHHhh---------hhhHHH-HHHHHHHhhh
Q 016048          279 DLMVIAGIAGTISQLIMMPVLAPTVGEARLLS-----FGLLFGCVHMFLYSVAW---------SSWVPY-AAAVFSILSV  343 (396)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-----~~~~~~~i~~~~~~~~~---------~~~~~~-~~~~~~~~~~  343 (396)
                      .......+...++. .+.+++.||++||+...     .+..+.+++++++....         +.+... ...+.+++.+
T Consensus       323 ~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  401 (491)
T 4aps_A          323 WFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM  401 (491)
T ss_dssp             GGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence            88888899999998 66689999999886544     67777777766665532         222222 3555677788


Q ss_pred             hhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          344 FSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       344 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ...+...+++.|.+|+++||++.|+.+....+|..++|.+.+.+.+.
T Consensus       402 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~  448 (491)
T 4aps_A          402 LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK  448 (491)
T ss_dssp             TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred             HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88899999999999999999999999999999999999999988765

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.97  E-value=5.4e-32  Score=250.00  Aligned_cols=358  Identities=14%  Similarity=0.097  Sum_probs=239.0

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      |+++++.+....++...+.+...|.+|.+..+       +++.+..+.|++.+.+.++..++++++|+++||+||||+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~   77 (417)
T 2cfq_A            5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL   77 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHT-------TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            45566677777788888888889999998765       34555667899999999999999999999999999999999


Q ss_pred             HHHHHhHHHHH---HHHhccCchhH-HHHHHHHHHHhhhccchhhHHHHHHHhcCCCc--ccchhHHHHHHHhhhhhhHH
Q 016048           83 VPITLSIIPLA---ILAYSRSRNFF-YAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP--GRRASVFGIFSGIVSGAFVC  156 (396)
Q Consensus        83 ~~~~~~~~~~~---~~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~  156 (396)
                      .+..+.++...   ...+++.   . ..+...+.+.|+ +.+...+.....+.++.++  ++|+...+......++|..+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~  153 (417)
T 2cfq_A           78 WIITGMLVMFAPFFIFIFGPL---LQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL  153 (417)
T ss_dssp             HHHHHTTSCHHHHHHHTHHHH---HHTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence            98877655321   1122211   1 113345666665 5554444434444444332  45677788888888999999


Q ss_pred             HHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhh
Q 016048          157 GTISARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVH  233 (396)
Q Consensus       157 g~~~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (396)
                      +|.+++.+   +||+.|++.++..++..+.. +..||+++++++++      ++   +        ++++++.+.++..+
T Consensus       154 ~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~---~--------~~~~~~~~~~~~~~  215 (417)
T 2cfq_A          154 GASIVGIMFTINNQFVFWLGSGCALILAVLL-FFAKTDAPSSATVA------NA---V--------GANHSAFSLKLALE  215 (417)
T ss_dssp             HHHHHHHHHHHCSHHHHTTTTTTTTTHHHHS-CSSCCCCSCSSCSS------SS---S--------SSCCCCCCHHHHHH
T ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-HHcCcccccccccc------cc---c--------ccccccccHHHHHH
Confidence            99988875   68999987766644433332 33333221111000      00   0        00011122333333


Q ss_pred             hhcCChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---ccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHH
Q 016048          234 LLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH---FNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLS  310 (396)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  310 (396)
                      .+ ++|.++...+..+.....+.....++|.|+.+.++   .+....+.......+..+++. +..+++.||+|||+.+.
T Consensus       216 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~l~  293 (417)
T 2cfq_A          216 LF-RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNALL  293 (417)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHH
T ss_pred             Hh-cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcHHHHHH
Confidence            33 46666665555444444455555668888876554   234455777777778888888 77789999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhH-HHHHHHHHHhhhhhhhhhh
Q 016048          311 FGLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCI-SGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       311 ~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~  388 (396)
                      .+..+.+++.+.+...++.+.... ..+.+.+.+...+....+..|.+|++.||++++.. +..+.+|+.++|.+.|.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~  373 (417)
T 2cfq_A          294 LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY  373 (417)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence            888888777666655444333332 23334455555666788999999999999999994 8888999999999999998


Q ss_pred             hcc
Q 016048          389 GDC  391 (396)
Q Consensus       389 ~~~  391 (396)
                      |..
T Consensus       374 ~~~  376 (417)
T 2cfq_A          374 ESI  376 (417)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            854

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=8.1e-29  Score=235.74  Aligned_cols=380  Identities=11%  Similarity=0.032  Sum_probs=241.2

Q ss_pred             cccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc-CCchhhh
Q 016048            4 KSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY-GRKALLT   82 (396)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~~~   82 (396)
                      ++.++.+.+..++..++.....+.++.++.+..+++ .+.+.+..+.|++.+++.++..+++++.|+++||+ |||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS-IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            456777888888998888888889998877644311 12337777899999999999999999999999999 9999999


Q ss_pred             HHHHHhHHHHHHHHhcc-CchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHH---HHHhhhhhhHHHH
Q 016048           83 VPITLSIIPLAILAYSR-SRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGI---FSGIVSGAFVCGT  158 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~  158 (396)
                      .+.++.+++.++.++++ +   ++.+++.|++.|+ +.+...+...+++.|++|+++|+++.+.   .+...++|..+||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~  165 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS  165 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998 8   8999999999999 8899999999999999999999876666   8888999999999


Q ss_pred             HHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc-----------ccchhhhhhhh--hhh------
Q 016048          159 ISARFI----STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPI-----------LSSKAEISASC--EES------  215 (396)
Q Consensus       159 ~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l-----------~~~~~~~~~~~--~~~------  215 (396)
                      .+++.+    +||+.|++.+++.++..+...+..|+.++++++++..           ++.+.+.+...  ...      
T Consensus       166 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (524)
T 2xut_A          166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSA  245 (524)
T ss_dssp             HTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhh
Confidence            887754    7999999988877665554433223222111110000           00000000000  000      


Q ss_pred             -------hh------------hhhhhccCCChhHHh--------hhhcCChhHHHHHHH---HHHHHHhhhhhhhhHHHH
Q 016048          216 -------TK------------KLQVFKRLPSIDDMV--------HLLKSSPTFSQAAIV---AFLSNLADAGLQGSMMYY  265 (396)
Q Consensus       216 -------~~------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  265 (396)
                             .+            ...+++.+.++++..        +..++++........   ..+....+......++.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (524)
T 2xut_A          246 AYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQ  325 (524)
T ss_dssp             HHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHH
T ss_pred             hhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHh
Confidence                   00            000000001110000        001112222211111   111222222223333443


Q ss_pred             hhhhccccc-cchhhHHHHHHHHHHHHHHHHHHhhh----hhhcc----hhHHHHHHHHHHHHHHHHHHhh---------
Q 016048          266 LKAKFHFNK-NQFADLMVIAGIAGTISQLIMMPVLA----PTVGE----ARLLSFGLLFGCVHMFLYSVAW---------  327 (396)
Q Consensus       266 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~g~----~~~~~~~~~~~~i~~~~~~~~~---------  327 (396)
                      ..+ .+.+. ...+.......+..++.. .+.+++.    ||.++    ++.+..+..+.+++++++....         
T Consensus       326 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  403 (524)
T 2xut_A          326 AND-MVKPQWFEPAMMQALNPLLVMLLI-PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSAL  403 (524)
T ss_dssp             HHH-SCCCSSSCHHHHHTTSGGGHHHHG-GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCC
T ss_pred             HHh-cCCCeeecHHHHHHHHHHHHHHhH-HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            332 22221 134444444444444444 3333432    33332    3456677777777776665532         


Q ss_pred             hhhHH-HHHHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          328 SSWVP-YAAAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       328 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      +.+.. ....+.+++.+...+...++..|..|+++||+++|+.+...++|+.++|.+.|.+.+.
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22222 3355667888888999999999999999999999999999999999999999998873

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.48  E-value=1.2e-13  Score=127.03  Aligned_cols=158  Identities=12%  Similarity=0.079  Sum_probs=123.5

Q ss_pred             chhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHH
Q 016048           27 AITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYA  106 (396)
Q Consensus        27 ~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (396)
                      .+|.+..+..    ++.+.+....|+..++..++..++.++.|+++||+|||+.+..+.++.+++.++.++.++   .+.
T Consensus       242 ~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~---~~~  314 (417)
T 2cfq_A          242 QFANFFTSFF----ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALE  314 (417)
T ss_dssp             HHHHHHHHTS----SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS---HHH
T ss_pred             HHHHHHHHHH----hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc---HHH
Confidence            3566655532    122344556788888888999999999999999999999999988888888877777777   777


Q ss_pred             HHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHH-HHHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHH
Q 016048          107 YYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGI-FSGIVSGAFVCGTISARFI----STSAAFQAATAGSIISA  181 (396)
Q Consensus       107 l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~  181 (396)
                      +++..++.++ +.+...+....++.|.+|++.|+...+. ++....+|..++|.+++.+    +++..|.+.+++.++..
T Consensus       315 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~  393 (417)
T 2cfq_A          315 VVILKTLHMF-EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT  393 (417)
T ss_dssp             HHHHTTHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            7788888887 6666667778899999999999999998 4778889999999888865    56778888887777766


Q ss_pred             HHHHHhcCCCC
Q 016048          182 VYMRIFLPESV  192 (396)
Q Consensus       182 ~~~~~~~~e~~  192 (396)
                      ++.++..||++
T Consensus       394 ~~~~~~~~~~~  404 (417)
T 2cfq_A          394 LISVFTLSGPG  404 (417)
T ss_dssp             HHHTTSSCCSC
T ss_pred             HHHHhhhcCCC
Confidence            66555556543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.47  E-value=2.3e-13  Score=126.47  Aligned_cols=173  Identities=12%  Similarity=0.015  Sum_probs=141.3

Q ss_pred             ccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhccccccccc--CCchhhh
Q 016048            5 SGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKY--GRKALLT   82 (396)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~--Grk~~~~   82 (396)
                      +.++.+.+..++...........+|.+..+       +.+.+..+.+++.+...++..++.++.|+++||+  |||+.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  324 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKE-------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  324 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-------BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence            345556677777777777777888888544       3567778899999999999999999999999999  9999998


Q ss_pred             HHHHHhH-HHHHHHHhccCchhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhh-hhHHHHHH
Q 016048           83 VPITLSI-IPLAILAYSRSRNFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSG-AFVCGTIS  160 (396)
Q Consensus        83 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~  160 (396)
                      .+..+.. ++.++..+.++.+ .+.+.+..++.|+ +.+...+....++.|..|+++|++++++.+....+ |..++|.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~  402 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMNPAGN-PTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI  402 (451)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTC-HHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8877766 6666666664211 6777888889998 77888888899999999999999999999999999 99999999


Q ss_pred             HHHh----hhHHHHHHHHHHHHHHHHHHHH
Q 016048          161 ARFI----STSAAFQAATAGSIISAVYMRI  186 (396)
Q Consensus       161 ~~~~----~~~~~f~~~~~~~~~~~~~~~~  186 (396)
                      .+.+    +|+..|++.+++.++..++.++
T Consensus       403 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          403 VGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            8875    7889998888887776665544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.44  E-value=1.9e-12  Score=121.75  Aligned_cols=153  Identities=12%  Similarity=0.201  Sum_probs=134.3

Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhh-----ccccccchhhHHHHHHHHHHHHHHHHHHhhhhh-hcchhHHHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAK-----FHFNKNQFADLMVIAGIAGTISQLIMMPVLAPT-VGEARLLSF  311 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~  311 (396)
                      ++.++......++..+.+++...+++.|+++.     +|++..+.+++.+...++..+++ ++.|+++|| +|||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~~g~r~~~~~   90 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG-TIGGFVADRIIGARPAVFW   90 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchHHHHH
Confidence            45666777777788888888889999999988     89999999999999999999999 777899999 899999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCcc--chhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          312 GLLFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNE--QGKAQGCISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       312 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~  388 (396)
                      +.++..++.++....++.+...+ .++.+++.+...+...+++.|.+|+++  |+++.++.+....+|..++|.+.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  170 (491)
T 4aps_A           91 GGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ  170 (491)
T ss_dssp             HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888777665555 556688888999999999999999988  778888899999999999999999998


Q ss_pred             hcc
Q 016048          389 GDC  391 (396)
Q Consensus       389 ~~~  391 (396)
                      +..
T Consensus       171 ~~~  173 (491)
T 4aps_A          171 EAA  173 (491)
T ss_dssp             HHS
T ss_pred             hhh
Confidence            753

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.44  E-value=1.9e-12  Score=119.80  Aligned_cols=143  Identities=10%  Similarity=-0.018  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY  323 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  323 (396)
                      .....+.............|. +.+.+|.+..+.+++.+...++..++. +..|++.||+|||+.+..+.++.+++.++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~  108 (438)
T 3o7q_A           31 LCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGAALF  108 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            334444444444555555565 456679999999999999999999999 777899999999999999999999998888


Q ss_pred             ---HHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhh
Q 016048          324 ---SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLT  388 (396)
Q Consensus       324 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  388 (396)
                         ...++.+...+ .++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.
T Consensus       109 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               66666665555 566688899999999999999999999999999999999999999999999998

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.40  E-value=4.6e-12  Score=120.11  Aligned_cols=152  Identities=13%  Similarity=0.089  Sum_probs=130.5

Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc------ccccchhhHHHHHHHHHHHHHHHHHHhhhhhh-cchhHHH
Q 016048          238 SPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFH------FNKNQFADLMVIAGIAGTISQLIMMPVLAPTV-GEARLLS  310 (396)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~  310 (396)
                      ++.++...+..++..+.+++...+++.|+.+.+|      +++.+.+++.+...++..++. +..|+++||+ |||+.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHH
Confidence            3456666777777888888888999999998889      999999999999999999999 7778999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHhh-hhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhh---HHHHHHHHHHhhhhhhh
Q 016048          311 FGLLFGCVHMFLYSVAW-SSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGC---ISGICSFANLVSPLAFS  385 (396)
Q Consensus       311 ~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~~g~~~~~~~~g  385 (396)
                      .+.++..++.++..... +.+.... .++.+++.+...+...+++.|.+|+++|+++.+.   .+....+|..++|.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888877 6555544 5566888889999999999999999999877666   88899999999999999


Q ss_pred             hhhhc
Q 016048          386 PLTGD  390 (396)
Q Consensus       386 ~l~~~  390 (396)
                      .+.+.
T Consensus       170 ~l~~~  174 (524)
T 2xut_A          170 LLLKN  174 (524)
T ss_dssp             HHHHT
T ss_pred             HHhcc
Confidence            98875

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.32  E-value=1.9e-11  Score=114.84  Aligned_cols=145  Identities=18%  Similarity=0.165  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhc--cCchhHHHHH-HHHHHHhhhccchhhHH
Q 016048           49 LSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYS--RSRNFFYAYY-VLRTLTAMVCEGSIHCL  125 (396)
Q Consensus        49 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-~~r~l~G~~~~~~~~~~  125 (396)
                      ..........+...++.++.+++.||+|||+.++.+.....++.+..+..  ........+. +.-+..+.  .....+.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  390 (491)
T 4gc0_A          313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF--AMSWGPV  390 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HTTTTHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH--HhHHHHH
Confidence            34455566677888889999999999999999999888888777665432  1111122222 22222222  2334567


Q ss_pred             HHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 016048          126 SLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI----------STSAAFQAATAGSIISAVYMRIFLPESVRDE  195 (396)
Q Consensus       126 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~----------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~  195 (396)
                      ...+.+|.+|.+.|++++++......++..+++.+...+          ++...|++.++++++..+..++++||++.+.
T Consensus       391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence            789999999999999999999998888888876654332          3456788888888888888889999997653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.30  E-value=1.9e-11  Score=110.72  Aligned_cols=145  Identities=12%  Similarity=0.070  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHH
Q 016048          244 AAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLY  323 (396)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~  323 (396)
                      .....++...........+|.+. +++|.++.+.+...+...+...++. +..|++.||+|||+.+..+..+..++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQ-LFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHH-TTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            33444455555555566666654 4579999999999999999999999 777899999999999999999999999988


Q ss_pred             HHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhc
Q 016048          324 SVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGD  390 (396)
Q Consensus       324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  390 (396)
                      ...++.+.... .++.+++.+...+...+++.|..|+++|++++++.+....+|..++|.+.+.+.++
T Consensus        83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            88877665555 55568888889999999999999999999999999999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	396
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 40/339 (11%), Positives = 95/339 (28%), Gaps = 4/339 (1%)

Query: 51  GFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVL 110
           GF  + I +       ++G++SD+   +  L   + L+   +  + +        A   +
Sbjct: 62  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 121

Query: 111 RTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVS-GAFVCGTISARFISTSAA 169
                   +G         +        R  +  +++   + G  +   +    ++    
Sbjct: 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 181

Query: 170 FQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSID 229
           + AA       A+ + +F    +RD            E   +        +  + L +  
Sbjct: 182 WHAALYMPAFCAILVALFAFAMMRDT--PQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ 239

Query: 230 DMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGT 289
             +  +  +      AI      L   G+      YLK   HF  ++ +    +   AG 
Sbjct: 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299

Query: 290 ISQLIMMPVLAPTVGEARLLSFGL-LFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPC 348
              L+   +        R  +    +       +      +  P    +  I+  F    
Sbjct: 300 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 359

Query: 349 LRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPL 387
              ++          KA G  +G       +     +  
Sbjct: 360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 39/340 (11%), Positives = 78/340 (22%), Gaps = 16/340 (4%)

Query: 51  GFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVL 110
           G   A I L +L+  PL G LSDK G +  L   IT  ++  A               ++
Sbjct: 46  GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105

Query: 111 RTLTAMVCEGSIHCLSLAYVADNVPPG--RRASVFGIFSGIVSGAFVCGTISARFISTSA 168
            ++   +  G         V   +     R    FG         +  G      + T  
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165

Query: 169 AFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSI 228
                  GS  + +   +                +     S++   +            +
Sbjct: 166 NQFVFWLGSGCALILAVLLF-------------FAKTDAPSSATVANAVGANHSAFSLKL 212

Query: 229 DDMVHLLKSSPTFSQAAIVAFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAG 288
              +         S   I    +         +      A        F  +  +  +  
Sbjct: 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLN 272

Query: 289 TISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAWSSWVPYAAAVFSILSVFSHPC 348
                    ++    G+  LL  G +     +       +  V     +      F    
Sbjct: 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVG 332

Query: 349 LRTIVSKQVASNEQGKAQGCISGIC-SFANLVSPLAFSPL 387
               ++ Q                    A +   +    +
Sbjct: 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	396
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.49
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.32

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-36  Score=276.26  Aligned_cols=362  Identities=12%  Similarity=0.031  Sum_probs=268.6

Q ss_pred             HHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHH
Q 016048           14 IFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLA   93 (396)
Q Consensus        14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~   93 (396)
                      .+..+++...+....|.+        + |.+.|..+.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+
T Consensus        34 ~~~~~~~~~~~~~~~p~~--------~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~  104 (447)
T d1pw4a_          34 YAAYYLVRKNFALAMPYL--------V-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML  104 (447)
T ss_dssp             HHHHHHHHTSHHHHHHHT--------T-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH--------H-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHh
Confidence            334444444444555543        2 3577778999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCc-hhHHHHHHHHHHHhhhccchhhHHHHHHHhcCCCcccchhHHHHHHHhhhhhhHHHHHHHHHh-----hhH
Q 016048           94 ILAYSRSR-NFFYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPPGRRASVFGIFSGIVSGAFVCGTISARFI-----STS  167 (396)
Q Consensus        94 ~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~~-----~~~  167 (396)
                      +++++++. .+++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++..     +||
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~  183 (447)
T d1pw4a_         105 FMGFVPWATSSIAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH  183 (447)
T ss_dssp             HHHHCHHHHSSSSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred             hccccchhhhhHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhccc
Confidence            88876421 017889999999999 88999999999999999999999999999999999999998877653     789


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhcCChhHHHHHHH
Q 016048          168 AAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLKSSPTFSQAAIV  247 (396)
Q Consensus       168 ~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (396)
                      +.|++.+.+.++..++.+..++|+|++.+..+..++.      ++..+...++.+++....+...+...+++.++.....
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (447)
T d1pw4a_         184 AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK------NDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA  257 (447)
T ss_dssp             TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC------CC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred             ccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh------hhcccchhhccccccchhhHHHHHHHcCchHHHHHHH
Confidence            9999999988888888878888776644321111000      0000001111111122233334445578888888888


Q ss_pred             HHHHHHhhhhhhhhHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHH--
Q 016048          248 AFLSNLADAGLQGSMMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSV--  325 (396)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~--  325 (396)
                      .++.....+....+.|.|+.+.++++..+.+.......+..+++. ++.+++.||++|++..........+.......  
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (447)
T d1pw4a_         258 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhh-hhhhhhhhhccccccccccchhHHHHHHHHHHHH
Confidence            888888888889999999999999999999999999999999999 77789999998876544433333222222222  


Q ss_pred             -h--hhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHH-HHHhhhhhhhhhhhccc
Q 016048          326 -A--WSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSF-ANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       326 -~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~~  392 (396)
                       .  .+.+.... .++.+++.....+....+..|.+|++.||++.|+.+...++ |..++|.+.|.+.|..+
T Consensus       337 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g  408 (447)
T d1pw4a_         337 MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG  408 (447)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             1  12222222 44456667777888899999999999999999999998887 55678999999998764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.2e-30  Score=233.89  Aligned_cols=362  Identities=13%  Similarity=0.062  Sum_probs=255.3

Q ss_pred             ccccchHHHHHHHHHHhhccccccchhhhhhhccCCCCCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhh
Q 016048            3 KKSGVSHLFITIFVHCFSTSMVAPAITDVTMSAVCPGRDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLT   82 (396)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~   82 (396)
                      |+|+++.+.+..++..++.+...|.+|.++.|       +++.|..+.|++.+++.++..++++++|+++||+||||+++
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~   77 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL   77 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            56788899999999999999999999998665       45778899999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHhccCchh-HHHHHHHHHHHhhhccchhhHHHHHHHhcCCCc--ccchhHHHHHHHhhhhhhHHHHH
Q 016048           83 VPITLSIIPLAILAYSRSRNF-FYAYYVLRTLTAMVCEGSIHCLSLAYVADNVPP--GRRASVFGIFSGIVSGAFVCGTI  159 (396)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~  159 (396)
                      .+..+..++..+..+..+... ....++.+.+.+. ..+...........+..++  +++.+..+........+..++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          78 WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTT-TGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh-cccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence            999999998888887765211 1223445555554 4444433333333333322  34555677777888888888988


Q ss_pred             HHHHh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhhhhhhhhhhhhhccCCChhHHhhhhc
Q 016048          160 SARFI---STSAAFQAATAGSIISAVYMRIFLPESVRDEDLYTPILSSKAEISASCEESTKKLQVFKRLPSIDDMVHLLK  236 (396)
Q Consensus       160 ~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (396)
                      +++.+   +|+..+........+..+...+..+|+++++++++                  ++++++++....+..+.. 
T Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-  217 (417)
T d1pv7a_         157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVAN------------------AVGANHSAFSLKLALELF-  217 (417)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSH------------------HHHSCCCCCCHHHHHHHT-
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHhcccccchhhhh------------------hhhhhccccccccccccc-
Confidence            88876   56777777777676666666677777766544211                  111111222222222222 


Q ss_pred             CChhHHHHHHHHHHHHHhhhhhhhhHHHHhh---hhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHH
Q 016048          237 SSPTFSQAAIVAFLSNLADAGLQGSMMYYLK---AKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGL  313 (396)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  313 (396)
                      +++..+....................+.+..   +..+.+....+.......+...++. ...+++.||.++|+.+..+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~~~~~~~~~~~  296 (417)
T d1pv7a_         218 RQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNALLLAG  296 (417)
T ss_dssp             TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHCHHHHHHHHH
T ss_pred             ccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccch-hhhhhhhcccccccchhhhH
Confidence            2333333333333222222222222233222   2234556666777778888888888 67789999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHH-HHHHHHhhhhhhhhhhHHHhhccCCccchhHhhhH-HHHHHHHHHhhhhhhhhhhhcc
Q 016048          314 LFGCVHMFLYSVAWSSWVPYA-AAVFSILSVFSHPCLRTIVSKQVASNEQGKAQGCI-SGICSFANLVSPLAFSPLTGDC  391 (396)
Q Consensus       314 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~~  391 (396)
                      .+.+++.+.+...++.+.... ..+.+++.+...+...+++.|.+|+++|+++.|+. +....+|..++|.+.|++.|+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~  376 (417)
T d1pv7a_         297 TIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI  376 (417)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888777666655 55568888889999999999999999999999986 4567799999999999999976


Q ss_pred             c
Q 016048          392 R  392 (396)
Q Consensus       392 ~  392 (396)
                      +
T Consensus       377 g  377 (417)
T d1pv7a_         377 G  377 (417)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.7e-13  Score=122.95  Aligned_cols=150  Identities=11%  Similarity=0.054  Sum_probs=131.7

Q ss_pred             CCcchhHHHHHHHHHHHHhHHHHhhhhcccccccccCCchhhhHHHHHhHHHHHHHHhccCchhHHHHHHHHHHHhhhcc
Q 016048           40 RDECSLAIYLSGFQQAIIGLGTLVMMPLVGNLSDKYGRKALLTVPITLSIIPLAILAYSRSRNFFYAYYVLRTLTAMVCE  119 (396)
Q Consensus        40 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  119 (396)
                      ..+.+.+....+...+...++..++..+.+++.||+|||+.+..+.++.+++.++..+.++   .+.+++..++.|+ +.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~  326 (417)
T d1pv7a_         251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALEVVILKTLHMF-EV  326 (417)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHH-HH
T ss_pred             ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc---cchhhHHHHHHHH-HH
Confidence            4455677788899999999999999999999999999999999999999999999999999   8999999999999 88


Q ss_pred             chhhHHHHHHHhcCCCcccchhHHHHH-HHhhhhhhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 016048          120 GSIHCLSLAYVADNVPPGRRASVFGIF-SGIVSGAFVCGTISARFI----STSAAFQAATAGSIISAVYMRIFLPESVR  193 (396)
Q Consensus       120 ~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  193 (396)
                      +...+...+++.|.+|+++|++..+.. +....+|..++|.+++.+    +++..|++.+++.++..++..+.++++.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            899999999999999999999999975 456678999999888765    78899999988888887777677765543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.1e-11  Score=112.48  Aligned_cols=129  Identities=16%  Similarity=0.131  Sum_probs=109.4

Q ss_pred             HHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHhh----hhhHHHH-HH
Q 016048          262 MMYYLKAKFHFNKNQFADLMVIAGIAGTISQLIMMPVLAPTVGEARLLSFGLLFGCVHMFLYSVAW----SSWVPYA-AA  336 (396)
Q Consensus       262 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~-~~  336 (396)
                      ..++++| +|+|.++.|++.+...++..+++ ++.|+++||+|||+.+..+.++.+++.++.+...    +.+...+ .+
T Consensus        47 ~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (447)
T d1pw4a_          47 AMPYLVE-QGFSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF  124 (447)
T ss_dssp             HHHHTTS-STTCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHH
T ss_pred             HHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Confidence            3345555 69999999999999999999999 7778999999999999999999999888877654    2233333 55


Q ss_pred             HHHHhhhhhhhhhhHHHhhccCCccchhHhhhHHHHHHHHHHhhhhhhhhhhhccc
Q 016048          337 VFSILSVFSHPCLRTIVSKQVASNEQGKAQGCISGICSFANLVSPLAFSPLTGDCR  392 (396)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  392 (396)
                      +.+++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+...
T Consensus       125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  180 (447)
T d1pw4a_         125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  180 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence            66788888899999999999999999999999999999999999999988877653