Citrus Sinensis ID: 016068


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MDQRKLLLIFVNVNMESEELSILASEHQQDIEMPIFYEGDVVISVAKELSSGSACIFSKQENNTLESTERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE
cccccEEEEEccccccHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccEEEEEccccEEEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEc
ccccEEEEEEccccccHHHHcccccccccEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHEHcccEEEEEEcccEEEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEc
MDQRKLLLIFVNVNMESEELSILASEHqqdiempifYEGDVVISVAKElssgsacifskqenntlesteRSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWasgwnatsqysfgFNRFEILGALVSVQLIWLISGILVYEAVDRIvhksptvngqLMFGVAAFGFLINIIMVTCighdhahhacghnhhigghvhgddhgphhegeklcaateenqtnlesnspiETKMLNINLQGAYLHVMADLIQSAGVMIAGLILwvkpgwsivDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHviaepavssseILDKIRDYCQKTHRIYHVTVQIE
MDQRKLLLIFVNVNMESEELSILASEHQQDIEMPIFYEGDVVISVAKELSSGSAcifskqenntlestersKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAepavssseilDKIRDYCQKTHRIYHVTVQIE
MDQRKLLLIFVNVNMESEELSILASEHQQDIEMPIFYEGDVVISVAKELSSGSACIFSKQENNTLESTERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTcighdhahhacghnhhigghvhgddhgphhegEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE
*****LLLIFVNVNMESEELSILASEHQQDIEMPIFYEGDVVISVAKELSSGSACIF****************AIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVH*******************************TKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTV***
****KLL*IFVN****************************************************************LFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAH******************************************************GAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE
MDQRKLLLIFVNVNMESEELSILASEHQQDIEMPIFYEGDVVISVAKELSSGSACIFSKQ**********SKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE
**QRKLLLIFVNVNMES**********QQ****PIF**********************************SKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHD****************************************************NINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDQRKLLLIFVNVNMESEELSILASEHQQDIEMPIFYEGDVVISVAKELSSGSACIFSKQENNTLESTERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
Q6DBM8375 Metal tolerance protein B yes no 0.941 0.994 0.489 6e-96
Q9LXS1393 Metal tolerance protein A no no 0.858 0.865 0.445 3e-85
Q688R1418 Metal tolerance protein 1 yes no 0.878 0.832 0.431 1e-84
Q9ZT63398 Metal tolerance protein 1 no no 0.891 0.886 0.427 2e-82
Q9M271334 Metal tolerance protein A no no 0.810 0.961 0.463 3e-77
Q54QU8543 Probable zinc transporter yes no 0.853 0.622 0.405 1e-61
Q2HJ10371 Zinc transporter 2 OS=Mus yes no 0.767 0.819 0.336 3e-53
Q5I020375 Zinc transporter 8 OS=Xen N/A no 0.765 0.808 0.366 7e-52
Q5XHB4374 Zinc transporter 8 OS=Xen no no 0.724 0.767 0.362 1e-50
Q62941359 Zinc transporter 2 OS=Rat yes no 0.770 0.849 0.324 2e-50
>sp|Q6DBM8|MTPB_ARATH Metal tolerance protein B OS=Arabidopsis thaliana GN=MTPB PE=2 SV=1 Back     alignment and function desciption
 Score =  351 bits (900), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 187/382 (48%), Positives = 267/382 (69%), Gaps = 9/382 (2%)

Query: 15  MESEELSILASEHQQDIEMPIFYEGDVVISVAKELSSGSACIFSKQENNTLESTERSKSA 74
           ME E++ IL  + ++++E P   + +  + V        +C F++QE+   E+ ER +S 
Sbjct: 1   MELEQICILKPDDEEEMESPSPSKTEENLGVVP-----LSCAFTRQEHCVSETKEREEST 55

Query: 75  IKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQ 134
            +L  LI   LI M V++VGGFKANSLAVMTDAAHLL+D+AG  +SL A+  S W A  +
Sbjct: 56  RRLSSLIFLYLIVMSVQIVGGFKANSLAVMTDAAHLLSDVAGLCVSLLAIKVSSWEANPR 115

Query: 135 YSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINII 194
            SFGF R E+L A +SVQLIWL+SG++++EA+ R++ +S  VNG++MFG++AFGF +N++
Sbjct: 116 NSFGFKRLEVLAAFLSVQLIWLVSGVIIHEAIQRLLSRSREVNGEIMFGISAFGFFMNLV 175

Query: 195 MVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKML 254
           MV  +GH+H+HH   H+HH   H H   H  H E        E N    E +S   +K +
Sbjct: 176 MVLWLGHNHSHHHHDHHHHHHNHKHQHQHH-HKEVVAEEEEEEMNPLKGEKSS---SKEM 231

Query: 255 NINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTI 314
           NIN+QGAYLH MAD+IQS GVMI G I+WVKP W +VDL CTL+F+AFAL+ T+P+LK I
Sbjct: 232 NINIQGAYLHAMADMIQSLGVMIGGGIIWVKPKWVLVDLICTLVFSAFALAATLPILKNI 291

Query: 315 FVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEI 374
           F ILMER P ++++ +L+R L+ I GV+ ++DLHVW ITVG++VLSCH++ EP  S  EI
Sbjct: 292 FGILMERVPRDMDIEKLERGLKRIDGVKIVYDLHVWEITVGRIVLSCHILPEPGASPKEI 351

Query: 375 LDKIRDYCQKTHRIYHVTVQIE 396
           +  +R++C+K++ IYH TVQ+E
Sbjct: 352 ITGVRNFCRKSYGIYHATVQVE 373




Involved in sequestration of excess zinc in the cytoplasm into vacuoles to maintain zinc homeostasis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LXS1|MTPA2_ARATH Metal tolerance protein A2 OS=Arabidopsis thaliana GN=MTPA2 PE=2 SV=2 Back     alignment and function description
>sp|Q688R1|MTP1_ORYSJ Metal tolerance protein 1 OS=Oryza sativa subsp. japonica GN=MTP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZT63|MTP1_ARATH Metal tolerance protein 1 OS=Arabidopsis thaliana GN=MTP1 PE=1 SV=2 Back     alignment and function description
>sp|Q9M271|MTPA1_ARATH Metal tolerance protein A1 OS=Arabidopsis thaliana GN=MTPA1 PE=2 SV=1 Back     alignment and function description
>sp|Q54QU8|Y3629_DICDI Probable zinc transporter protein DDB_G0283629 OS=Dictyostelium discoideum GN=DDB_G0283629 PE=3 SV=1 Back     alignment and function description
>sp|Q2HJ10|ZNT2_MOUSE Zinc transporter 2 OS=Mus musculus GN=Slc30a2 PE=2 SV=1 Back     alignment and function description
>sp|Q5I020|ZNT8_XENLA Zinc transporter 8 OS=Xenopus laevis GN=slc30a8 PE=2 SV=1 Back     alignment and function description
>sp|Q5XHB4|ZNT8_XENTR Zinc transporter 8 OS=Xenopus tropicalis GN=slc30a8 PE=2 SV=1 Back     alignment and function description
>sp|Q62941|ZNT2_RAT Zinc transporter 2 OS=Rattus norvegicus GN=Slc30a2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
224059428334 metal tolerance protein [Populus trichoc 0.843 1.0 0.663 1e-126
224168583330 metal tolerance protein [Populus trichoc 0.833 1.0 0.668 1e-124
359478906382 PREDICTED: metal tolerance protein B-lik 0.959 0.994 0.619 1e-119
356542164388 PREDICTED: metal tolerance protein B-lik 0.931 0.951 0.551 1e-111
297745995367 unnamed protein product [Vitis vinifera] 0.871 0.940 0.567 1e-111
356541207370 PREDICTED: metal tolerance protein B-lik 0.931 0.997 0.587 1e-110
449455080386 PREDICTED: metal tolerance protein B-lik 0.959 0.984 0.551 1e-107
449508507386 PREDICTED: metal tolerance protein B-lik 0.959 0.984 0.548 1e-107
255558944346 cation efflux protein/ zinc transporter, 0.858 0.982 0.561 1e-95
158828212359 Ztp14 [Cleome spinosa] 0.828 0.913 0.512 1e-95
>gi|224059428|ref|XP_002299844.1| metal tolerance protein [Populus trichocarpa] gi|222847102|gb|EEE84649.1| metal tolerance protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/342 (66%), Positives = 270/342 (78%), Gaps = 8/342 (2%)

Query: 55  CIFSKQENNTLESTERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDI 114
           CIF KQEN TLES ERSKSA KL  LIIF LI M VEVVGG KANSLAV+TDAAHLLTD+
Sbjct: 1   CIFPKQENFTLESEERSKSATKLSGLIIFYLIVMAVEVVGGVKANSLAVITDAAHLLTDV 60

Query: 115 AGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSVQLIWLISGILVYEAVDRIVHKSP 174
           AGFSISLFAVW SGW ATS  SFG++R E+LGAL+SVQLIWLISG+L+YEA+DRI+HK+ 
Sbjct: 61  AGFSISLFAVWVSGWKATSHQSFGYSRLEVLGALLSVQLIWLISGVLIYEAIDRILHKNA 120

Query: 175 TVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCA 234
            VNG LMF +A FGF+IN IMV  +GHDH+HHAC  ++H   H H        EGE  CA
Sbjct: 121 RVNGGLMFAIALFGFIINFIMVMWLGHDHSHHACHDHNHDHTHNH--------EGEDYCA 172

Query: 235 ATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLS 294
             E  +T L S +P +TK+ NIN+QGAY+HVMADLIQS GVMIAG I+W KP W +VDL 
Sbjct: 173 TNEGEETKLVSGTPAKTKIWNINIQGAYVHVMADLIQSVGVMIAGAIIWAKPDWLVVDLI 232

Query: 295 CTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITV 354
           CTL+F+ F L TT+PML+ IF ILMERTP EI+V RL+  L+CI+GVQ +H+LHVW+IT 
Sbjct: 233 CTLLFSTFVLFTTLPMLRDIFCILMERTPHEIDVGRLESALKCIEGVQDVHNLHVWSITA 292

Query: 355 GKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE 396
           GKLVLSCHV+AEP  SS EIL  I +YC+K HRI+++T+QIE
Sbjct: 293 GKLVLSCHVMAEPGASSPEILRMIGEYCEKMHRIHNITIQIE 334




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224168583|ref|XP_002339166.1| metal tolerance protein [Populus trichocarpa] gi|222874545|gb|EEF11676.1| metal tolerance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359478906|ref|XP_002280383.2| PREDICTED: metal tolerance protein B-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356542164|ref|XP_003539540.1| PREDICTED: metal tolerance protein B-like [Glycine max] Back     alignment and taxonomy information
>gi|297745995|emb|CBI16051.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541207|ref|XP_003539072.1| PREDICTED: metal tolerance protein B-like [Glycine max] Back     alignment and taxonomy information
>gi|449455080|ref|XP_004145281.1| PREDICTED: metal tolerance protein B-like [Cucumis sativus] gi|449474024|ref|XP_004154052.1| PREDICTED: metal tolerance protein B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449508507|ref|XP_004163331.1| PREDICTED: metal tolerance protein B-like [Cucumis sativus] gi|386783471|gb|AFJ24701.1| metal transport protein 4 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255558944|ref|XP_002520495.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] gi|223540337|gb|EEF41908.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|158828212|gb|ABW81090.1| Ztp14 [Cleome spinosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2043117375 MTPB1 "AT2G29410" [Arabidopsis 0.421 0.445 0.532 3.4e-92
TAIR|locus:2044382398 ZAT "AT2G46800" [Arabidopsis t 0.426 0.424 0.532 4e-83
TAIR|locus:2099079432 MTPA2 "AT3G58810" [Arabidopsis 0.411 0.377 0.485 1.7e-82
TAIR|locus:2079497334 MTPA1 "AT3G61940" [Arabidopsis 0.358 0.425 0.514 3.7e-74
DICTYBASE|DDB_G0283629543 DDB_G0283629 "cation diffusion 0.345 0.252 0.510 1e-62
WB|WBGene00011821360 cdf-2 [Caenorhabditis elegans 0.358 0.394 0.387 7.8e-56
ZFIN|ZDB-GENE-060315-10388 slc30a8 "solute carrier family 0.856 0.873 0.347 9.9e-55
GENEDB_PFALCIPARUM|PF07_0065556 PF07_0065 "zinc transporter, p 0.393 0.280 0.428 4.1e-54
UNIPROTKB|Q8IBU1556 PF07_0065 "Zinc transporter, p 0.393 0.280 0.428 4.1e-54
ZFIN|ZDB-GENE-041014-347398 slc30a2 "solute carrier family 0.391 0.389 0.401 6.1e-54
TAIR|locus:2043117 MTPB1 "AT2G29410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 498 (180.4 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
 Identities = 89/167 (53%), Positives = 126/167 (75%)

Query:   230 EKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWS 289
             +++ A  EE + N        +K +NIN+QGAYLH MAD+IQS GVMI G I+WVKP W 
Sbjct:   207 KEVVAEEEEEEMNPLKGEKSSSKEMNINIQGAYLHAMADMIQSLGVMIGGGIIWVKPKWV 266

Query:   290 IVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHV 349
             +VDL CTL+F+AFAL+ T+P+LK IF ILMER P ++++ +L+R L+ I GV+ ++DLHV
Sbjct:   267 LVDLICTLVFSAFALAATLPILKNIFGILMERVPRDMDIEKLERGLKRIDGVKIVYDLHV 326

Query:   350 WAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRIYHVTVQIE 396
             W ITVG++VLSCH++ EP  S  EI+  +R++C+K++ IYH TVQ+E
Sbjct:   327 WEITVGRIVLSCHILPEPGASPKEIITGVRNFCRKSYGIYHATVQVE 373


GO:0005385 "zinc ion transmembrane transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006812 "cation transport" evidence=IEA
GO:0006829 "zinc ion transport" evidence=ISS
GO:0008324 "cation transmembrane transporter activity" evidence=IEA
GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS
GO:0015562 "efflux transmembrane transporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
TAIR|locus:2044382 ZAT "AT2G46800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099079 MTPA2 "AT3G58810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079497 MTPA1 "AT3G61940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283629 DDB_G0283629 "cation diffusion facilitator (CDF) family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00011821 cdf-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060315-10 slc30a8 "solute carrier family 30 (zinc transporter), member 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF07_0065 PF07_0065 "zinc transporter, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IBU1 PF07_0065 "Zinc transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-347 slc30a2 "solute carrier family 30 (zinc transporter), member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6DBM8MTPB_ARATHNo assigned EC number0.48950.94190.9946yesno
Q688R1MTP1_ORYSJNo assigned EC number0.43100.87870.8325yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
PtrMTP4.1
metal tolerance protein (334 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
TIGR01297268 TIGR01297, CDF, cation diffusion facilitator famil 2e-67
COG1230296 COG1230, CzcD, Co/Zn/Cd efflux system component [I 2e-62
pfam01545273 pfam01545, Cation_efflux, Cation efflux family 2e-41
PRK03557312 PRK03557, PRK03557, zinc transporter ZitB; Provisi 6e-37
COG0053304 COG0053, MMT1, Predicted Co/Zn/Cd cation transport 1e-21
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter Back     alignment and domain information
 Score =  214 bits (546), Expect = 2e-67
 Identities = 87/313 (27%), Positives = 156/313 (49%), Gaps = 53/313 (16%)

Query: 88  MVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGA 147
           M++++VGG  + SLA++ DA H L+D+A  +I+L A+  S   A  ++ FG  R EIL A
Sbjct: 3   MLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAA 62

Query: 148 LVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHA 207
           L++   + +++  ++YEA++R+++  P ++G  M  VA  G ++N+I+       + H  
Sbjct: 63  LLNGLFLVVVALFILYEAIERLINPEPEIDGGTMLIVAIVGLIVNLILAL-----YLHRV 117

Query: 208 CGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMA 267
            GH                                            ++ L+ A LHV++
Sbjct: 118 -GHRLG-----------------------------------------SLALRAAALHVLS 135

Query: 268 DLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILMERTPSEIN 327
           D + S GV+I  L+++   GW   D    L+ +   L T   +LK    +L++  P E +
Sbjct: 136 DALSSVGVLIGALLIYF--GWHWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEED 193

Query: 328 VARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEI----LDKIRDYCQ 383
           +  +++ +  I GV+ +HDLH+W I  GKL L  HV+ +P +   +     L+  R+  +
Sbjct: 194 LEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILK 253

Query: 384 KTHRIYHVTVQIE 396
           +   I HVT+Q+E
Sbjct: 254 RHPGIEHVTIQVE 266


This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence [Transport and binding proteins, Cations and iron carrying compounds]. Length = 268

>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family Back     alignment and domain information
>gnl|CDD|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional Back     alignment and domain information
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
COG1230296 CzcD Co/Zn/Cd efflux system component [Inorganic i 100.0
KOG1482379 consensus Zn2+ transporter [Inorganic ion transpor 100.0
PRK03557312 zinc transporter ZitB; Provisional 100.0
PRK09509299 fieF ferrous iron efflux protein F; Reviewed 100.0
COG0053304 MMT1 Predicted Co/Zn/Cd cation transporters [Inorg 100.0
TIGR01297268 CDF cation diffusion facilitator family transporte 100.0
KOG1483404 consensus Zn2+ transporter ZNT1 and related Cd2+/Z 100.0
KOG1484354 consensus Putative Zn2+ transporter MSC2 (cation d 100.0
KOG1485412 consensus Mitochondrial Fe2+ transporter MMT1 and 100.0
PF01545284 Cation_efflux: Cation efflux family; InterPro: IPR 100.0
COG3965314 Predicted Co/Zn/Cd cation transporters [Inorganic 99.94
KOG2802503 consensus Membrane protein HUEL (cation efflux sup 99.84
COG0053304 MMT1 Predicted Co/Zn/Cd cation transporters [Inorg 98.1
TIGR01297268 CDF cation diffusion facilitator family transporte 97.9
PRK09509299 fieF ferrous iron efflux protein F; Reviewed 97.83
PRK03557312 zinc transporter ZitB; Provisional 97.05
COG1230 296 CzcD Co/Zn/Cd efflux system component [Inorganic i 95.36
KOG1485412 consensus Mitochondrial Fe2+ transporter MMT1 and 95.29
PF01545284 Cation_efflux: Cation efflux family; InterPro: IPR 89.29
PLN02601303 beta-carotene hydroxylase 87.54
PF02535317 Zip: ZIP Zinc transporter; InterPro: IPR003689 The 85.21
PF1453596 AMP-binding_C_2: AMP-binding enzyme C-terminal dom 84.62
PF03780108 Asp23: Asp23 family; InterPro: IPR005531 This entr 80.97
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
Probab=100.00  E-value=1.2e-54  Score=407.21  Aligned_cols=277  Identities=32%  Similarity=0.606  Sum_probs=262.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHH
Q 016068           69 ERSKSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGAL  148 (396)
Q Consensus        69 ~~~~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~l  148 (396)
                      .+.+.+|++++++++|++|+++|+++|+++||+||+||++||+.|+++.++++++.++++|+++++|||||.|+|.|+++
T Consensus        16 ~~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~   95 (296)
T COG1230          16 DNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAF   95 (296)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 016068          149 VSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHE  228 (396)
Q Consensus       149 i~~~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~  228 (396)
                      +++++++.+++++++|+++||.+|. +++...|++++++|+++|+++++.+.++                          
T Consensus        96 ~nav~Li~~s~~I~~EAi~R~~~P~-~i~~~~ml~va~~GL~vN~~~a~ll~~~--------------------------  148 (296)
T COG1230          96 LNALLLIVVSLLILWEAIQRLLAPP-PIHYSGMLVVAIIGLVVNLVSALLLHKG--------------------------  148 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC-CCCccchHHHHHHHHHHHHHHHHHhhCC--------------------------
Confidence            9999999999999999999999997 5556999999999999999999999742                          


Q ss_pred             cchhhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhH
Q 016068          229 GEKLCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTV  308 (396)
Q Consensus       229 ~e~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~  308 (396)
                                             +.+|.|+++.++|.++|+++|+++++++++++++ +|+|+||+++++++++++..++
T Consensus       149 -----------------------~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~-~w~~~Dpi~si~i~~lil~~a~  204 (296)
T COG1230         149 -----------------------HEENLNMRGAYLHVLGDALGSVGVIIAAIVIRFT-GWSWLDPILSIVIALLILSSAW  204 (296)
T ss_pred             -----------------------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccchHHHHHHHHHHHHHHH
Confidence                                   2357899999999999999999999999999887 9999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCCHHHHHHHHHHHHHhhCCC
Q 016068          309 PMLKTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSEILDKIRDYCQKTHRI  388 (396)
Q Consensus       309 ~~~~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~~~~i~~~i~~~l~~~~~v  388 (396)
                      +++|++..+|++.+|+..+.+++++.+.+.|||.++||+|+|+++++...+++|+++++..+.+++.+++++++.++|++
T Consensus       205 ~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~~~~~~~~~l~~~~~I  284 (296)
T COG1230         205 PLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITGGEHALTLHVVVDEVADADAALDQIVRRLLEKYGI  284 (296)
T ss_pred             HHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCCCCceeEEEEEEecCccchHHHHHHHHHHHhhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999997777777899999999999999


Q ss_pred             ceeEEeeC
Q 016068          389 YHVTVQIE  396 (396)
Q Consensus       389 ~~vtV~ve  396 (396)
                      .|+|||+|
T Consensus       285 ~hvTiQ~e  292 (296)
T COG1230         285 EHVTIQLE  292 (296)
T ss_pred             ceEEEEec
Confidence            99999997



>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03557 zinc transporter ZitB; Provisional Back     alignment and domain information
>PRK09509 fieF ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01297 CDF cation diffusion facilitator family transporter Back     alignment and domain information
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt Back     alignment and domain information
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only] Back     alignment and domain information
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01297 CDF cation diffusion facilitator family transporter Back     alignment and domain information
>PRK09509 fieF ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>PRK03557 zinc transporter ZitB; Provisional Back     alignment and domain information
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt Back     alignment and domain information
>PLN02601 beta-carotene hydroxylase Back     alignment and domain information
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [] Back     alignment and domain information
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B Back     alignment and domain information
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283 Back     alignment and structure
 Score = 86.8 bits (216), Expect = 2e-19
 Identities = 45/319 (14%), Positives = 101/319 (31%), Gaps = 53/319 (16%)

Query: 81  IIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFN 140
              + + +++++   +   S++++      L DI     +L  V  S   A   +SFG  
Sbjct: 10  TAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHG 69

Query: 141 RFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIG 200
           + E L AL     I   +  L    +  ++  +P  +  +   V     +  II+V+   
Sbjct: 70  KAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVS--- 126

Query: 201 HDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQG 260
                        +                                S          ++ 
Sbjct: 127 ---------FQRWVVRRT---------------------------QSQA--------VRA 142

Query: 261 AYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILME 320
             LH  +D++ +  +++A  + W   GW   D    L    + L + + M       L++
Sbjct: 143 DMLHYQSDVMMNGAILLALGLSWY--GWHRADALFALGIGIYILYSALRMGYEAVQSLLD 200

Query: 321 RTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVSSSE---ILDK 377
           R   +     +   +    GV   HDL        + +   H+  E ++   +   + D+
Sbjct: 201 RALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFI-QIHLEMEDSLPLVQAHMVADQ 259

Query: 378 IRDYCQKTHRIYHVTVQIE 396
           +     +      V +  +
Sbjct: 260 VEQAILRRFPGSDVIIHQD 278


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
3j1z_P306 YIIP, cation efflux family protein; zinc transport 100.0
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 100.0
3byp_A94 CZRB protein; membrane protein, zinc transporter, 99.35
2zzt_A107 Putative uncharacterized protein; cation diffusion 99.22
3j1z_P306 YIIP, cation efflux family protein; zinc transport 96.83
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 96.72
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis} Back     alignment and structure
Probab=100.00  E-value=2.6e-53  Score=408.72  Aligned_cols=275  Identities=16%  Similarity=0.178  Sum_probs=258.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHH
Q 016068           72 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSV  151 (396)
Q Consensus        72 ~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~  151 (396)
                      ..++..++++++|++++++|+++|+++||+||+|||+||++|+++.++++++.+.++||+|++|||||+|+|++++++++
T Consensus        10 ~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~   89 (306)
T 3j1z_P           10 WVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQS   89 (306)
T ss_dssp             CSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHH
Confidence            34667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccch
Q 016068          152 QLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEK  231 (396)
Q Consensus       152 ~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e~  231 (396)
                      ++++++++++++|+++++++|++.....+++++++++++.|+.+++++++.                             
T Consensus        90 ~~l~~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------------------  140 (306)
T 3j1z_P           90 AFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRA-----------------------------  140 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred             HHHHHHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHHh-----------------------------
Confidence            999999999999999999999877777888999999999999999888754                             


Q ss_pred             hhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHH
Q 016068          232 LCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPML  311 (396)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~  311 (396)
                                        +++.+|.+++++++|+++|+++|++++++.++.++  +|+|+||++++++++++++.+++++
T Consensus       141 ------------------~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~~--g~~~~Dpi~ai~Ia~~I~~~~~~l~  200 (306)
T 3j1z_P          141 ------------------LAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQY--GWWWADGLFAVLIACYIGQQAFDLG  200 (306)
T ss_dssp             ------------------HTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCCS--SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------ccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHHh--CcchhhhHHHHHHHHHHHHHHHHHH
Confidence                              56778999999999999999999999998777654  8999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCcccHHHHHHHHHcccCccceeeeEEEEeeCCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHhhCCC
Q 016068          312 KTIFVILMERTPSEINVARLQRDLECIKGVQTIHDLHVWAITVGKLVLSCHVIAEPAVS---SSEILDKIRDYCQKTHRI  388 (396)
Q Consensus       312 ~~~~~~Ll~~sp~~~~~~~i~~~l~~~~~V~~v~~l~~~~~~~~~~~v~v~I~v~~~~~---~~~i~~~i~~~l~~~~~v  388 (396)
                      |++...|+|++|++++.++|++.+++.|||.++|++|+|+. |+++++++||++|++++   +|++.+++|++|++++++
T Consensus       201 ~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~-G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~  279 (306)
T 3j1z_P          201 YRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQA-GKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED  279 (306)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEE-TTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEE-CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999999999999997 56888999999999997   478999999999999999


Q ss_pred             ceeEEeeC
Q 016068          389 YHVTVQIE  396 (396)
Q Consensus       389 ~~vtV~ve  396 (396)
                      .++|||+|
T Consensus       280 ~~v~Ihve  287 (306)
T 3j1z_P          280 AEVIIHQD  287 (306)
T ss_dssp             CEEEECCE
T ss_pred             CeEEEEeC
Confidence            99999987



>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Back     alignment and structure
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Back     alignment and structure
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Back     alignment and structure
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis} Back     alignment and structure
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 396
d2qfia2204 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF { 1e-18
d2qfia182 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF 0.002
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]
 Score = 81.4 bits (200), Expect = 1e-18
 Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 49/241 (20%)

Query: 81  IIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFN 140
              + + +++++   +   S++++      L DI     +L  V  S   A   +SFG  
Sbjct: 13  TAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHG 72

Query: 141 RFEILGALVSVQLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIG 200
           + E L AL     I   +  L    +  ++  +P  +  +   V     +  II+V+   
Sbjct: 73  KAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQR 132

Query: 201 HDHAHHACGHNHHIGGHVHGDDHGPHHEGEKLCAATEENQTNLESNSPIETKMLNINLQG 260
                                                                 +  ++ 
Sbjct: 133 WVVRRTQ-----------------------------------------------SQAVRA 145

Query: 261 AYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPMLKTIFVILME 320
             LH  +D++ +  +++A  + W   GW   D    L    + L + + M       L++
Sbjct: 146 DMLHYQSDVMMNGAILLALGLSWY--GWHRADALFALGIGIYILYSALRMGYEAVQSLLD 203

Query: 321 R 321
           R
Sbjct: 204 R 204


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d2qfia2204 Ferrous-iron efflux pump FieF {Escherichia coli [T 99.97
d2qfia182 Ferrous-iron efflux pump FieF (YiiP) {Escherichia 99.04
d3bypa182 Putative Zinc transporter CzrB {Thermus thermophil 99.02
d2cu6a191 Hypothetical protein TTHB138 {Thermus thermophilus 83.59
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]
Probab=99.97  E-value=3.8e-38  Score=283.90  Aligned_cols=201  Identities=17%  Similarity=0.253  Sum_probs=185.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhheecChHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCcchHHHHHHHHHH
Q 016068           72 KSAIKLFCLIIFSLIAMVVEVVGGFKANSLAVMTDAAHLLTDIAGFSISLFAVWASGWNATSQYSFGFNRFEILGALVSV  151 (396)
Q Consensus        72 ~~~~~l~~~l~~n~~~~v~~l~~g~~s~S~aL~aDa~hsl~D~~s~~i~l~a~~~s~k~~~~~~pfG~~R~E~l~~li~~  151 (396)
                      ..+|.+++++++|++++++|+++|+++||.+|++|++|++.|+++.++++++.+.++||+|++|||||+|+|++++++.+
T Consensus         4 ~~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~   83 (204)
T d2qfia2           4 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQS   83 (204)
T ss_dssp             SSSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccCCcchhHHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCCCccch
Q 016068          152 QLIWLISGILVYEAVDRIVHKSPTVNGQLMFGVAAFGFLINIIMVTCIGHDHAHHACGHNHHIGGHVHGDDHGPHHEGEK  231 (396)
Q Consensus       152 ~~l~~~~~~l~~esi~~li~~~~~~~~~~~~~i~~~~lv~n~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~e~  231 (396)
                      ++++++++++++|+++++++|+++.++.+++++++++++.+.++..+..+.                             
T Consensus        84 ~~l~~~~~~~~~~si~~l~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~-----------------------------  134 (204)
T d2qfia2          84 MFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWV-----------------------------  134 (204)
T ss_dssp             TTTSSSTTGGGSSCTTSSTTTSSSSTTTSCCCCCGGGSSCGGGGTTTHHHH-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------
Confidence            999999999999999999999877778888888888888888777776643                             


Q ss_pred             hhhhhhhcccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHhhHHHH
Q 016068          232 LCAATEENQTNLESNSPIETKMLNINLQGAYLHVMADLIQSAGVMIAGLILWVKPGWSIVDLSCTLIFAAFALSTTVPML  311 (396)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~l~s~~vlva~~l~~~~~~~~~~D~i~siii~~~i~~~~~~~~  311 (396)
                                        .++.+|++++++++|+++|+++|++++++.++.++  +|+|+||++++++++++++.+++++
T Consensus       135 ------------------~~~~~s~~~~a~~~~~~~D~~~s~~vii~~~~~~~--~~~~~D~i~aiii~~~i~~~~~~~~  194 (204)
T d2qfia2         135 ------------------VRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWY--GWHRADALFALGIGIYILYSALRMG  194 (204)
T ss_dssp             ------------------GGGCCSTTSGGGGGGHHHHTCCSSTTCCCTTSSCS--STTSSSSSSHHHHTTTTTTTTTTHH
T ss_pred             ------------------hcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh--CchhhhHHHHHHHHHHHHHHHHHHH
Confidence                              66788899999999999999999999987666554  7999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 016068          312 KTIFVILMER  321 (396)
Q Consensus       312 ~~~~~~Ll~~  321 (396)
                      +++.+.|+|+
T Consensus       195 ~~~~~~Lld~  204 (204)
T d2qfia2         195 YEAVQSLLDR  204 (204)
T ss_dssp             HHTGGGSSCC
T ss_pred             HHHHHHHhCc
Confidence            9999999986



>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure