Citrus Sinensis ID: 016105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
Protein Sequence
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQAIQS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEEEEEccccEEEEEEEcccccccccccEEccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccEEEccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccccEccccEEEccccccccccccccccHcHHHHHccccccccccccccEEEEEcccEEEEEccccccEEcccccEEEEEEEEccHEEEEEEEccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEccccEEEEEccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAYYRRAKAALDAFRNlsskavpkspvqescsrvysngsansakfssgfysySCISQrlrnsycnpnfntakryyyvdryhvqhfrprgprkwlqnprTVFIVVVIGSGAFITLYLgnletvpytkrTHFVLLSKAVERQLGESQFQQMKAAFKgkilpaihpdsVRVRLIAKDIIEALQRGLkhetvwsdmgyastetdfvnegRAARDTLRALSensergktegkwhqedeilddkWVQQSRKKGQEKGLQSAtshldglnweVLVVNEpvinafclpggkivVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFlrlpfsrkmEMEADYIGLLLIAssgydprvapkftRSWVKLQAIQS
Flexible Loop (DISEMBL)
MAYYRRAKAAldafrnlsskavpkspvqesCSRVYSNgsansakfsSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFrprgprkwlqnpRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRglkhetvwsdmgyastetdfvnegRAARDTLRalsensergktegkwhqedeilddKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQAIQS
Low Complexity Region (SEG)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGhevahavarhaaeGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQAIQS
Disordered region (IsUnstruct)
********************************************FSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFV*******************************************************HLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKL*****
Disordered Region (DISOPRED)
*******KAAL*********************************************************NTAKRYYYV***************WLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQM*AAFKG*ILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTET*****************************************QQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQ****
Disordered Region (DISEMBL)
MAYYRRAKAALDAFRNLSS***************YSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRAL**************QEDEILDDKWVQ**************TSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQAIQS
Disordered Region (DISPRO)
*AYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQ****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQAIQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	395	2.2.26 [Sep-21-2011]
P36163	345	Mitochondrial metalloendo	yes	no	0.321	0.368	0.430	1e-24
Q9P7G4	337	Mitochondrial metalloendo	yes	no	0.341	0.400	0.388	8e-22
Q96E52	524	Metalloendopeptidase OMA1	yes	no	0.339	0.255	0.348	5e-16
Q3SZN3	523	Metalloendopeptidase OMA1	yes	no	0.331	0.250	0.342	4e-14
D3ZS74	504	Metalloendopeptidase OMA1	yes	no	0.308	0.242	0.350	1e-13
Q9D8H7	521	Metalloendopeptidase OMA1	yes	no	0.306	0.232	0.338	2e-13
E9QBI7	478	Metalloendopeptidase OMA1	yes	no	0.318	0.263	0.35	2e-13
Q8ZCC3	486	TPR repeat-containing pro	yes	no	0.288	0.234	0.3	8e-11
P66950	487	TPR repeat-containing pro	yes	no	0.321	0.260	0.269	1e-10
P66951	487	TPR repeat-containing pro	N/A	no	0.321	0.260	0.269	1e-10

>sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 84/130 (64%), Gaps = 3/130 (2%)

Query: 256 TSHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVA 313
            S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++ HE AH +A
Sbjct: 151 NSLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHEFAHQLA 210

Query: 314 RHAAEGITKNLWFAILQLILYQFVMPDVVNT-MSTLFLRLPFSRKMEMEADYIGLLLIAS 372
           RH AE ++K   +++L L+LY       +N  +   FLR+P SR+ME EADYIGL++++ 
Sbjct: 211 RHTAENLSKAPIYSLLGLVLYTVTGAHAINNILLDGFLRMPASRQMETEADYIGLMIMSR 270

Query: 373 SGYDPRVAPK 382
           + + P+ + K
Sbjct: 271 ACFQPQESIK 280

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Can cleave the misfolded multi-pass membrane protein OXA1.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -

>sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1

 Score =  105 bits (261), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 9/144 (6%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
           A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++ HE AH VAR
Sbjct: 144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHETAHQVAR 203

Query: 315 HAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLR----LPFSRKMEMEADYIGLLLI 370
           H+AE I      A+  ++       D+   +S   L     LPFSRKME EADYIGL+L+
Sbjct: 204 HSAEKIAFTR--AVSCIVFLAAASLDLSGQLSHFLLNFGLLLPFSRKMETEADYIGLMLM 261

Query: 371 ASSGYDPRVAPKFTRSWVKLQAIQ 394
           + + +DP  A      W ++ A +
Sbjct: 262 SQACFDPNAAKTL---WERMDAAE 282

Protease that is part of the quality control system in the inner membrane of mitochondria. Cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 15/149 (10%)

Query: 259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE 318
           +  +NW + VV+ P+INAF LP G++ VFTG L       +++ ++GHE+AHAV  HAAE
Sbjct: 280 ISQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAE 339

Query: 319 --GITKNLWF-AILQLILYQFVMPD---------VVNTMSTLFLRLPFSRKMEMEADYIG 366
             G+   L F  ++ L +   + P          + + +       P+SRK+E EAD IG
Sbjct: 340 KAGMVHLLDFLGMIFLTMIWAICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIG 399

Query: 367 LLLIASSGYDPRVAPKFTRSWVKLQAIQS 395
           LLL A +  D R +  F   W +++ + S
Sbjct: 400 LLLAAKACADIRASSVF---WQQMEFVDS 425

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 15/146 (10%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT 321
           +NW + VV+ P INAF LP G++ VFTGLL       +++ ++GHE+AHAV  HAAE  +
Sbjct: 283 INWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVTDIHQLSFLLGHEIAHAVLEHAAEKAS 342

Query: 322 KNLWFAILQLILYQF---VMPD---------VVNTMSTLFLRLPFSRKMEMEADYIGLLL 369
                  L LI       + P          + + +       P+SR +E EAD IGL L
Sbjct: 343 LVHLLDFLGLIFLTTIWAICPRDSLALLGQWIQSKLQEFLFDRPYSRTLEAEADRIGLQL 402

Query: 370 IASSGYDPRVAPKFTRSWVKLQAIQS 395
            A +  D R +  F   W +++  +S
Sbjct: 403 AAKACVDVRASSVF---WQQMEFAES 425

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 12/134 (8%)

Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT 321
           +NW V VV+ P +NAF LP G++ VFTGLL       +++ ++GHE+AHAV  HAAE  +
Sbjct: 262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHEIAHAVLGHAAEKAS 321

Query: 322 KNLWFAILQLILYQF---VMPD---------VVNTMSTLFLRLPFSRKMEMEADYIGLLL 369
                  L +I       + P          + + +       P+SR +E EAD IGL L
Sbjct: 322 LVHLLDFLGMIFLTMIWAICPRDSLAVLGQWIQSKLQEYMFDRPYSRTLEAEADKIGLQL 381

Query: 370 IASSGYDPRVAPKF 383
            A +  D R +  F
Sbjct: 382 AAKACVDVRASSVF 395

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 12/133 (9%)

Query: 263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITK 322
           NW V VV+ P +NAF LP G++ +FTGLL       +++ ++GHE+AHAV  HAAE  + 
Sbjct: 280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHEIAHAVLGHAAEKASL 339

Query: 323 NLWFAILQLILYQF---VMPD---------VVNTMSTLFLRLPFSRKMEMEADYIGLLLI 370
                 L +I       + P          + + +       P+SR +E EAD +GL L 
Sbjct: 340 VHLLDFLGMIFLTMIWAICPRDSLAVLGQWIQSKLQEYMFDRPYSRTLEAEADKVGLQLA 399

Query: 371 ASSGYDPRVAPKF 383
           A +  D R +  F
Sbjct: 400 AKACADVRASSVF 412

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of OPA1 at S1 position, leading to OPA1 inactivation and negative regulation of mitochondrial fusion. Its role in mitochondrial quality control is essential for regulating lipid metabolism as well as to maintain body temperature and energy expenditure under cold-stress conditions.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 14/140 (10%)

Query: 257 SHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA 316
           + +  + W V VV+ P +NAF LP G+I VFTG+L       ++  I+GHE+AHA+  HA
Sbjct: 247 AEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGMLNAVTDIHQLTFILGHEMAHALIGHA 306

Query: 317 AEGITKN-------------LWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEAD 363
           AE  + +             +W    +  L           +  LF R PFSRK+E EAD
Sbjct: 307 AEQASLSHVVELLSLVLLTAIWAVCPRDSLAALGHWIQGKLVQFLFDR-PFSRKLEAEAD 365

Query: 364 YIGLLLIASSGYDPRVAPKF 383
            +GL + A +  D R  P F
Sbjct: 366 QVGLQMAAKACADVRAGPVF 385

Metalloprotease that is part of the quality control system in the inner membrane of mitochondria. Following stress conditions that induce loss of mitochondrial membrane potential, mediates cleavage of opa1 at S1 position, leading to opa1 inactivation and negative regulation of mitochondrial fusion.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8ZCC3|Y3069_YERPE TPR repeat-containing protein YPO3069/y1412/YP_2691 OS=Yersinia pestis GN=YPO3069 PE=4 SV=1

 Score = 68.6 bits (166), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 16/130 (12%)

Query: 268 VVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN---- 323
           +VN   INAF   GG +V+ + L  +   ++E+A+++ HE++H   RH A  + +     
Sbjct: 96  LVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQRLA 155

Query: 324 --LWFAILQLILYQFVMPDVVNTMSTLFLRLP--------FSRKMEMEADYIGLLLIASS 373
              W  +L  IL     P     M+ L   L         F++  E EAD IG+ ++  S
Sbjct: 156 PLTWVGVLGSILLTMASPQA--GMAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQRS 213

Query: 374 GYDPRVAPKF 383
           G+DP+  P F
Sbjct: 214 GFDPQAMPNF 223

Yersinia pestis (taxid: 632)

>sp|P66950|YFGC_SALTY TPR repeat-containing protein YfgC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yfgC PE=4 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 257 SHLDGLN--WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
           SH D +   +   ++N   INAF   GG +V+ + L  +   ++++A+++ HE++H   R
Sbjct: 85  SHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQR 144

Query: 315 HAAEGITKN------LWFAILQLILYQFVMPDVVNTMSTLFL------RLPFSRKMEMEA 362
           H A  +          W   L  IL     P       T  L       + F+++ E EA
Sbjct: 145 HLARAMEDQKRSAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEA 204

Query: 363 DYIGLLLIASSGYDPRVAPKF 383
           D IG+ ++  +G+DP+  P F
Sbjct: 205 DRIGIQVLQRAGFDPQAMPSF 225

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P66951|YFGC_SALTI TPR repeat-containing protein YfgC OS=Salmonella typhi GN=yfgC PE=4 SV=1

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 257 SHLDGLN--WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
           SH D +   +   ++N   INAF   GG +V+ + L  +   ++++A+++ HE++H   R
Sbjct: 85  SHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQR 144

Query: 315 HAAEGITKN------LWFAILQLILYQFVMPDVVNTMSTLFL------RLPFSRKMEMEA 362
           H A  +          W   L  IL     P       T  L       + F+++ E EA
Sbjct: 145 HLARAMEDQKRSAPLTWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEA 204

Query: 363 DYIGLLLIASSGYDPRVAPKF 383
           D IG+ ++  +G+DP+  P F
Sbjct: 205 DRIGIQVLQRAGFDPQAMPSF 225

Salmonella typhi (taxid: 90370)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
255539649	482	peptidase, putative [Ricinus communis] g	0.956	0.784	0.695	1e-162
449460776	440	PREDICTED: uncharacterized protein LOC10	0.956	0.859	0.710	1e-156
449499671	440	PREDICTED: uncharacterized LOC101206881	0.956	0.859	0.710	1e-156
356530935	448	PREDICTED: uncharacterized protein LOC10	0.956	0.843	0.680	1e-151
225455604	434	PREDICTED: mitochondrial metalloendopept	0.939	0.854	0.688	1e-149
224122540	382	predicted protein [Populus trichocarpa]	0.797	0.824	0.765	1e-146
297792483	436	peptidase M48 family protein [Arabidopsi	0.956	0.866	0.613	1e-139
30696099	442	Peptidase family M48 family protein [Ara	0.946	0.846	0.616	1e-138
10177873	485	unnamed protein product [Arabidopsis tha	0.946	0.771	0.616	1e-138
356517492	445	PREDICTED: uncharacterized protein LOC10	0.949	0.842	0.607	1e-130

>gi|255539649|ref|XP_002510889.1| peptidase, putative [Ricinus communis] gi|223550004|gb|EEF51491.1| peptidase, putative [Ricinus communis]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/397 (69%), Positives = 334/397 (84%), Gaps = 19/397 (4%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPV-QESCSRVYSNGSANSA-----KFSSGFYSYSC 54
           M  +++AK A+D FRN +SK   ++P+ QES SR+Y NGS++ +     KFS GFY YS 
Sbjct: 32  MERFKKAKLAIDTFRNYASKINHRAPLHQESISRIYQNGSSSVSSSNQSKFS-GFYPYSS 90

Query: 55  ISQRL--------RNSYCNPNF-NTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVV 105
           +SQRL        +  + NP   ++ KR+YYVDRY V HF+PRGPR+W QNPR+V IV +
Sbjct: 91  VSQRLGLGFQMGTKKIHSNPFLGSSGKRFYYVDRYQVHHFKPRGPRRWFQNPRSVLIVFL 150

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
           +GSG FIT+Y GNLETVPYTKR HFVLL+K++E+++GE+QF+QMKAAFKGK+LPAIHP+S
Sbjct: 151 VGSGVFITVYFGNLETVPYTKRKHFVLLAKSMEKKIGENQFEQMKAAFKGKMLPAIHPES 210

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
           VRVRLIAKDIIEALQRGL+ ETVWSDMGYAS+E D  +E    R+TLRAL+EN E  K E
Sbjct: 211 VRVRLIAKDIIEALQRGLRQETVWSDMGYASSENDMKHEA-TGRETLRALTENEE--KVE 267

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIV 285
            KW++EDE+LDD W+Q SRKKGQE+G ++ TSHL+GLNWEVLVVN+PV+NA CLPGGKI+
Sbjct: 268 TKWYKEDEVLDDNWIQHSRKKGQERGSRAETSHLEGLNWEVLVVNDPVVNALCLPGGKII 327

Query: 286 VFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTM 345
           VFTGLL+HF+TDAEIATIIGHEV HAVARH AEGITKNLWFAILQLILYQFVMPDVVNTM
Sbjct: 328 VFTGLLDHFKTDAEIATIIGHEVGHAVARHVAEGITKNLWFAILQLILYQFVMPDVVNTM 387

Query: 346 STLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPK 382
           STLFLRLPFSR+ME+EADYIGLLL+AS+GYDPR+AP+
Sbjct: 388 STLFLRLPFSRRMEIEADYIGLLLMASAGYDPRIAPR 424

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460776|ref|XP_004148121.1| PREDICTED: uncharacterized protein LOC101206881 [Cucumis sativus]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/387 (71%), Positives = 316/387 (81%), Gaps = 9/387 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGKTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFS 355
           +DAEIATIIGHEVAHAVARH+AEGITKNL FA+LQLILYQF+MPD+VNTMSTLFLRLPFS
Sbjct: 297 SDAEIATIIGHEVAHAVARHSAEGITKNLGFAVLQLILYQFIMPDIVNTMSTLFLRLPFS 356

Query: 356 RKMEMEADYIGLLLIASSGYDPRVAPK 382
           R+MEMEADYIGLLLIAS+GYDPRVAPK
Sbjct: 357 RRMEMEADYIGLLLIASAGYDPRVAPK 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499671|ref|XP_004160882.1| PREDICTED: uncharacterized LOC101206881 [Cucumis sativus]

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/387 (71%), Positives = 316/387 (81%), Gaps = 9/387 (2%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNG---SANSAKFSSGFYSYSCISQ 57
           M  +R++K   DAFRN SSK  PK  +Q S SR+   G   S+     S GF S S I +
Sbjct: 1   MNCFRKSKFVFDAFRNPSSKIFPKDLIQGSRSRISHTGYSFSSGRTSNSHGFQSVSPIVR 60

Query: 58  RLR--NSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLY 115
           R        NP F  +KR+YYVDRY +QHF+PRGPR+W Q+PRT+ IVVV+GSG FIT+Y
Sbjct: 61  RFGEIGRRYNPFFGDSKRFYYVDRYRIQHFKPRGPRRWFQDPRTLLIVVVLGSGVFITVY 120

Query: 116 LGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDI 175
            GNLETVPYTKR HFVLLSK +ER++GES+F+QMKAAFKGKILPAIHP+SVRVRLIAKDI
Sbjct: 121 YGNLETVPYTKRRHFVLLSKPMERKIGESEFEQMKAAFKGKILPAIHPESVRVRLIAKDI 180

Query: 176 IEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEIL 235
           IEALQRGL+ E VW+D+GYAS       EG +  +TL AL ++    K EGKW++EDEIL
Sbjct: 181 IEALQRGLRQENVWNDLGYASEAVIGAPEG-SGHETLMALKDSGSE-KLEGKWYREDEIL 238

Query: 236 DDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFR 295
           DDKWV+ SRKKGQ  G Q+ TSHLDGLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHFR
Sbjct: 239 DDKWVEHSRKKGQ--GSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFR 296

Query: 296 TDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFS 355
           +DAEIATIIGHEVAHAVARH+AEGITKNL FA+LQLILYQF+MPD+VNTMSTLFLRLPFS
Sbjct: 297 SDAEIATIIGHEVAHAVARHSAEGITKNLGFAVLQLILYQFIMPDIVNTMSTLFLRLPFS 356

Query: 356 RKMEMEADYIGLLLIASSGYDPRVAPK 382
           R+MEMEADYIGLLLIAS+GYDPRVAPK
Sbjct: 357 RRMEMEADYIGLLLIASAGYDPRVAPK 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530935|ref|XP_003534034.1| PREDICTED: uncharacterized protein LOC100799127 [Glycine max]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 268/394 (68%), Positives = 319/394 (80%), Gaps = 16/394 (4%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANS-AKFSS--GFYSYSCISQ 57
           M +YRR K ALD FR L+S+  P++P+ +  +R+ S+G  +S +K +S  GF S+   SQ
Sbjct: 1   MGWYRRGKLALDHFRRLASRVTPQNPIFQRGARICSSGYLDSGSKVASFNGFSSFCSTSQ 60

Query: 58  RLRNSYC---NPNFNT-----AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSG 109
           RL        N NF+      AKR+YYVD  +V+HF+PRGP  W +NPR VFIVV++GSG
Sbjct: 61  RLGTRGVVGVNRNFHNSVLFGAKRFYYVDPRNVRHFKPRGPWHWFENPRHVFIVVMVGSG 120

Query: 110 AFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVR 169
             IT+Y GN+ETVPYTKRTH +LLSKA+ER+LGES+F+Q+K  FKGKILP IHP+SVRV 
Sbjct: 121 VLITVYFGNIETVPYTKRTHLILLSKAMERKLGESEFEQIKTGFKGKILPPIHPESVRVT 180

Query: 170 LIAKDIIEALQRGL-KHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKW 228
           +IAKDII+ALQRGL K E VWSD+GYAS     V EG   R+TL AL+ + E  K EG W
Sbjct: 181 MIAKDIIDALQRGLRKEEQVWSDLGYASEHAMLV-EG-DGRETLNALAGSEE--KIEGNW 236

Query: 229 HQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFT 288
            +EDEILDDKW+QQSRKKGQE+G Q+ATSHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFT
Sbjct: 237 AKEDEILDDKWIQQSRKKGQERGSQAATSHLDGLNWEILVVNEPVVNAFCLPGGKIVVFT 296

Query: 289 GLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTL 348
           GLLEHF++DAEIATIIGHEV HAVARH AEGITKNLWF ILQLILYQFV PD+V+TMS+L
Sbjct: 297 GLLEHFKSDAEIATIIGHEVGHAVARHGAEGITKNLWFTILQLILYQFVTPDIVHTMSSL 356

Query: 349 FLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPK 382
           FLRLPFSR+ME+EADYIGLLLIAS+GYDPRVAPK
Sbjct: 357 FLRLPFSRRMEIEADYIGLLLIASAGYDPRVAPK 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455604|ref|XP_002269952.1| PREDICTED: mitochondrial metalloendopeptidase OMA1 [Vitis vinifera]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/388 (68%), Positives = 319/388 (82%), Gaps = 17/388 (4%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSA----NSAKFSSGFYSYSCIS 56
           M++YRRAK+A +A R+    A+P++P+QE  SR+  N S+    N+++ S GF  +S IS
Sbjct: 1   MSFYRRAKSAFNALRS----AIPRTPIQEPTSRITHNPSSIYSSNNSRVS-GFSPFSLIS 55

Query: 57  QR--LRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITL 114
            +  L+  Y NP    A+RYYYVDRY VQHFRPRGPR+W QNPRTVFIVVV+GSG  IT+
Sbjct: 56  CQIGLKRCYPNPFLGGARRYYYVDRYRVQHFRPRGPRRWFQNPRTVFIVVVVGSGVLITV 115

Query: 115 YLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKD 174
           Y GNLE +PYT RTHFVLLS+++ER++GE+QF+Q+K  FKGKILPAIHPDSVRVRLI+ D
Sbjct: 116 YFGNLEAIPYTNRTHFVLLSRSMERRIGEAQFEQLKGTFKGKILPAIHPDSVRVRLISND 175

Query: 175 IIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI 234
           II+ALQRGL HE VWSD GYA+ E DF+ +    R+TL AL +        GKWH++DEI
Sbjct: 176 IIKALQRGLSHERVWSDPGYAA-EGDFMVDEARTRETLAALMDTPP-----GKWHKDDEI 229

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHF 294
           LDDKWV QSRK+ QE+G +  T HL+GLNWEVLVVNEPV+NAFCLPGGKIVVFTGLLEHF
Sbjct: 230 LDDKWVHQSRKEAQERGSRPTTQHLEGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHF 289

Query: 295 RTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPF 354
           RTDAEIATIIGHE+ HAVARHAAEGITKNLWFAILQLILYQF+MPDVV+ MSTL LRLPF
Sbjct: 290 RTDAEIATIIGHEIGHAVARHAAEGITKNLWFAILQLILYQFIMPDVVHAMSTLLLRLPF 349

Query: 355 SRKMEMEADYIGLLLIASSGYDPRVAPK 382
           SR+MEMEADYIGLLL+AS+GYDPR+AP+
Sbjct: 350 SRRMEMEADYIGLLLMASAGYDPRIAPR 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122540|ref|XP_002318862.1| predicted protein [Populus trichocarpa] gi|222859535|gb|EEE97082.1| predicted protein [Populus trichocarpa]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 245/320 (76%), Positives = 284/320 (88%), Gaps = 5/320 (1%)

Query: 71  AKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHF 130
           AKR+YYVDRY VQHF+PRGP++W +NPRTV IVV++GSGAFIT+Y GNLETVPYTKR HF
Sbjct: 18  AKRFYYVDRYRVQHFKPRGPKRWFRNPRTVLIVVLVGSGAFITVYYGNLETVPYTKRRHF 77

Query: 131 VLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWS 190
           VLLSK +ER++GE+QF+QMKAAFKGK+LPA+HP+SVR+RLIA+DII+ALQRGLK E VWS
Sbjct: 78  VLLSKTMERKMGETQFEQMKAAFKGKMLPALHPESVRMRLIAQDIIDALQRGLKREQVWS 137

Query: 191 DMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEK 250
           DMGYAS E+D  +E  +A +TL+ALSE  E  K EGKW++EDEILDD WVQQ RKK  EK
Sbjct: 138 DMGYASQESDMAHEA-SAHETLKALSEREE--KIEGKWYKEDEILDDNWVQQCRKK--EK 192

Query: 251 GLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAH 310
           GL++  SHLDGLNWE+LVVNEPV+NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEV H
Sbjct: 193 GLKADASHLDGLNWEILVVNEPVVNAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVGH 252

Query: 311 AVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLI 370
           AVARHAAEGITKNLW AILQLILYQF+MPD+ N MS LFLRLPFSR+ME+EADY+GLLL+
Sbjct: 253 AVARHAAEGITKNLWVAILQLILYQFIMPDIANAMSVLFLRLPFSRRMEIEADYVGLLLM 312

Query: 371 ASSGYDPRVAPKFTRSWVKL 390
           AS+GYDPR+AP+      KL
Sbjct: 313 ASAGYDPRIAPRVYEKLGKL 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792483|ref|XP_002864126.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297309961|gb|EFH40385.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 235/383 (61%), Positives = 303/383 (79%), Gaps = 5/383 (1%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSNGSANSAKFSSGFYSYSCISQRL 59
           M++YRR K   D+ R N++ K +P+S +    + + S+G ++ +    G  S++ + Q  
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHLPSRINPIGSSGFSSISSRQVGLRSWTSLGQNT 60

Query: 60  RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNL 119
                NP  +  KR YYVDRY V+HF+PRGP +W QNPRTVF VV++GS A ITLY+GNL
Sbjct: 61  NRIAYNPFLSVPKRNYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVIVGSVALITLYVGNL 120

Query: 120 ETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEAL 179
           ETVPYTKRTHF+LLSK +E+ LGE+QF+Q+K  +KGKILPAIHP+S+RVRLIAK++I+AL
Sbjct: 121 ETVPYTKRTHFILLSKPMEKLLGETQFEQIKKTYKGKILPAIHPESIRVRLIAKEVIDAL 180

Query: 180 QRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKW 239
           QRGL +E VWSD+GYASTE+      +  ++   A+S   E   T+ KW + D++LDD+W
Sbjct: 181 QRGLSNERVWSDLGYASTESSLGGGDKGVKEIEMAMS--GEDTMTDMKWSKADQVLDDEW 238

Query: 240 VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAE 299
           +QQSRKK  +    +A+SHL+G++WEVLVVNEP++NAFCLP GKIVVFTGLL+ F++DAE
Sbjct: 239 IQQSRKKDSKA--HAASSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGLLDIFKSDAE 296

Query: 300 IATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKME 359
           +AT+IGHEV HAVARH AEGITKNLWFA+LQL+LYQFVMPD+VNTMS LFLRLPFSRKME
Sbjct: 297 VATVIGHEVGHAVARHVAEGITKNLWFAVLQLVLYQFVMPDLVNTMSALFLRLPFSRKME 356

Query: 360 MEADYIGLLLIASSGYDPRVAPK 382
           +EADYIGLLL+AS+GYDPRVAPK
Sbjct: 357 IEADYIGLLLLASAGYDPRVAPK 379

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696099|ref|NP_199987.2| Peptidase family M48 family protein [Arabidopsis thaliana] gi|26451602|dbj|BAC42898.1| unknown protein [Arabidopsis thaliana] gi|332008738|gb|AED96121.1| Peptidase family M48 family protein [Arabidopsis thaliana]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/391 (61%), Positives = 306/391 (78%), Gaps = 17/391 (4%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 1   MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 57

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 58  WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDFVN-EGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query: 291 LEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFL 350
           L HF++DAE+AT+IGHEV HAVARH AEGITKNLWFAILQL+LYQFVMPD+VNTMS LFL
Sbjct: 294 LNHFKSDAEVATVIGHEVGHAVARHVAEGITKNLWFAILQLVLYQFVMPDLVNTMSALFL 353

Query: 351 RLPFSRKMEMEADYIGLLLIASSGYDPRVAP 381
           RLPFSRKME+EADYIGLLL+AS+GYDPRVAP
Sbjct: 354 RLPFSRKMEIEADYIGLLLLASAGYDPRVAP 384

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177873|dbj|BAB11243.1| unnamed protein product [Arabidopsis thaliana]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/391 (61%), Positives = 306/391 (78%), Gaps = 17/391 (4%)

Query: 1   MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
           M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct: 44  MSWYRRTKLVFDSLRRNINPKILPRSHV---TSRINNPIGSSNPSAKFSSISSREVGLRS 100

Query: 52  YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
           ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct: 101 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 160

Query: 112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
           ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct: 161 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 220

Query: 172 AKDIIEALQRGLKHETVWSDMGYASTETDFVN-EGRAARDTLRALSENSERGKTEGKWHQ 230
           AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct: 221 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 278

Query: 231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
           ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct: 279 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 336

Query: 291 LEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFL 350
           L HF++DAE+AT+IGHEV HAVARH AEGITKNLWFAILQL+LYQFVMPD+VNTMS LFL
Sbjct: 337 LNHFKSDAEVATVIGHEVGHAVARHVAEGITKNLWFAILQLVLYQFVMPDLVNTMSALFL 396

Query: 351 RLPFSRKMEMEADYIGLLLIASSGYDPRVAP 381
           RLPFSRKME+EADYIGLLL+AS+GYDPRVAP
Sbjct: 397 RLPFSRKMEIEADYIGLLLLASAGYDPRVAP 427

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517492|ref|XP_003527421.1| PREDICTED: uncharacterized protein LOC100800848 [Glycine max]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/395 (60%), Positives = 297/395 (75%), Gaps = 20/395 (5%)

Query: 1   MAYYRRAKAALDAFRNLSSKAVPKSPVQESCSRVYSNGSANS----AKFSSGFYSYSC-I 55
           M +YRR K ALD F +L+S+ VP++P+ +  SR++ +G  +S    A+FS    S  C I
Sbjct: 1   MGWYRRGKLALDRFHSLASRVVPQNPIFQHSSRIWQSGYLDSGSKGARFSG--LSLCCSI 58

Query: 56  SQRL--------RNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIG 107
           SQRL          ++ NP    A R+YYVD  +V+HF+PRGPR W QN R +F+ V++G
Sbjct: 59  SQRLGAQGVVGVNGNFHNPFLLGANRFYYVDPCNVRHFKPRGPRHWFQNSRHIFVAVMVG 118

Query: 108 SGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVR 167
               IT++ GNLETVPYTKRTH +LLSKA+ER+LGESQF+Q+KA F+GKILP IHP+SVR
Sbjct: 119 W-VLITVFFGNLETVPYTKRTHLILLSKAMERRLGESQFEQIKADFEGKILPPIHPESVR 177

Query: 168 VRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGK 227
           V +IA +II+AL R L  E  W+D GYAS E     EG   R+TL AL  + E  K EG 
Sbjct: 178 VTMIANEIIDALLRRLMKEQGWNDFGYAS-EHAMPVEGDG-RETLSALVGSEE--KVEGS 233

Query: 228 WHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVF 287
            H+E++ILD KWV+ SRK GQE+G   ATSHL GL+WE+LVVN+P +NAFCLPGGKIVVF
Sbjct: 234 CHKENKILDGKWVRLSRKNGQERGSLIATSHLVGLDWEILVVNKPDLNAFCLPGGKIVVF 293

Query: 288 TGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMST 347
           TGL +HF++DAEIATIIGHEV H VARH AEGITKNLWFAILQLILY   +PD+VN +S+
Sbjct: 294 TGLFDHFKSDAEIATIIGHEVGHVVARHNAEGITKNLWFAILQLILYLLFIPDIVNIISS 353

Query: 348 LFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPK 382
           LFL LPFSR+ME+EADYIGLLLIAS+GYDPRVAPK
Sbjct: 354 LFLHLPFSRRMEVEADYIGLLLIASAGYDPRVAPK 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
TAIR|locus:2165356	442	AT5G51740 [Arabidopsis thalian	0.946	0.846	0.588	1.8e-119
SGD|S000001795	345	OMA1 "Metalloendopeptidase of	0.318	0.365	0.364	1.5e-21
POMBASE|SPAP14E8.04	337	oma1 "metallopeptidase Oma1 (p	0.341	0.400	0.319	1.6e-19
ASPGD|ASPL0000044232	376	AN1850 [Emericella nidulans (t	0.324	0.340	0.304	7.7e-19
CGD|CAL0001997	336	orf19.3827 [Candida albicans (	0.321	0.377	0.276	1.1e-14
UNIPROTKB|H7BZX2	328	OMA1 "Metalloendopeptidase OMA	0.331	0.399	0.294	4.6e-11
DICTYBASE|DDB_G0289335	687	DDB_G0289335 "Metalloendopepti	0.402	0.231	0.307	1.7e-10
UNIPROTKB|Q96E52	524	OMA1 "Metalloendopeptidase OMA	0.331	0.25	0.294	2.8e-10
UNIPROTKB|Q9KM08	263	VC_A0581 "Putative uncharacter	0.288	0.433	0.36	5.1e-10
TIGR_CMR|VC_A0581	263	VC_A0581 "lipoprotein, putativ	0.288	0.433	0.36	5.1e-10

TAIR|locus:2165356 AT5G51740 [Arabidopsis thaliana (taxid:3702)]

 Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
 Identities = 230/391 (58%), Positives = 295/391 (75%)

Query:     1 MAYYRRAKAALDAFR-NLSSKAVPKSPVQESCSRVYSN-GSAN-SAKFSS------GFYS 51
             M++YRR K   D+ R N++ K +P+S V    SR+ +  GS+N SAKFSS      G  S
Sbjct:     1 MSWYRRTKLVFDSLRRNINPKILPRSHVT---SRINNPIGSSNPSAKFSSISSREVGLRS 57

Query:    52 YSCISQRLRNSYCNPNFNTAKRYYYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAF 111
             ++ + +       NP  +  KRYYYVDRY V+HF+PRGP +W QNPRTVF VV++GS   
Sbjct:    58 WTSLGRNTNRIAYNPFLSQPKRYYYVDRYQVRHFKPRGPGRWFQNPRTVFTVVLVGSVGL 117

Query:   112 ITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLI 171
             ITL +GN ET+PYTKRTHF+LLSK +E+ LGE+QF+Q+K  ++GKILPA HP+S+RVRLI
Sbjct:   118 ITLIVGNTETIPYTKRTHFILLSKPMEKLLGETQFEQIKKTYQGKILPATHPESIRVRLI 177

Query:   172 AKDIIEALQRGLKHETVWSDMGYASTETDFVN-EGRAARDTLRALSENSERGKTEGKWHQ 230
             AK++I+ALQRGL +E VWSD+GYASTE+       +  ++   A+S   E   T+ KW +
Sbjct:   178 AKEVIDALQRGLSNERVWSDLGYASTESSLGGGSDKGVKEMEMAMS--GEDTMTDMKWSK 235

Query:   231 EDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGL 290
             ED++LDD+W+Q+SRKK  +    +ATSHL+G++WEVLVVNEP++NAFCLP GKIVVFTGL
Sbjct:   236 EDQVLDDQWIQKSRKKDSKA--HAATSHLEGISWEVLVVNEPIVNAFCLPAGKIVVFTGL 293

Query:   291 LEHFRTDAEIATIIGXXXXXXXXXXXXXGITKNLWFAILQLILYQFVMPDVVNTMSTLFL 350
             L HF++DAE+AT+IG             GITKNLWFAILQL+LYQFVMPD+VNTMS LFL
Sbjct:   294 LNHFKSDAEVATVIGHEVGHAVARHVAEGITKNLWFAILQLVLYQFVMPDLVNTMSALFL 353

Query:   351 RLPFSRKMEMEADYIGLLLIASSGYDPRVAP 381
             RLPFSRKME+EADYIGLLL+AS+GYDPRVAP
Sbjct:   354 RLPFSRKMEIEADYIGLLLLASAGYDPRVAP 384

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

SGD|S000001795 OMA1 "Metalloendopeptidase of the mitochondrial inner membrane" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 217 (81.4 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 47/129 (36%), Positives = 74/129 (57%)

Query:   257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXX 314
             S LDG+ WE+ VVN+P    NAF LPGGK+ +F+ +L     D  IAT++          
Sbjct:   152 SLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHEFAHQLAR 211

Query:   315 XXXXGITKNLWFAILQLILYQFVMPDVVNT-MSTLFLRLPFSRKMEMEADYIGLLLIASS 373
                  ++K   +++L L+LY       +N  +   FLR+P SR+ME EADYIGL++++ +
Sbjct:   212 HTAENLSKAPIYSLLGLVLYTVTGAHAINNILLDGFLRMPASRQMETEADYIGLMIMSRA 271

Query:   374 GYDPRVAPK 382
              + P+ + K
Sbjct:   272 CFQPQESIK 280

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0006508 "proteolysis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

POMBASE|SPAP14E8.04 oma1 "metallopeptidase Oma1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 187 (70.9 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
 Identities = 46/144 (31%), Positives = 70/144 (48%)

Query:   255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXX 314
             A S +  L WE+ V+ +P  NAF LPGGK+ VF G+L   + +  +A ++          
Sbjct:   144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHETAHQVAR 203

Query:   315 XXXXGITKNLWFAILQLILYQFVMPDVVNTMSTLFLR----LPFSRKMEMEADYIGLLLI 370
                  I      A+  ++       D+   +S   L     LPFSRKME EADYIGL+L+
Sbjct:   204 HSAEKIAFTR--AVSCIVFLAAASLDLSGQLSHFLLNFGLLLPFSRKMETEADYIGLMLM 261

Query:   371 ASSGYDPRVAPKFTRSWVKLQAIQ 394
             + + +DP  A      W ++ A +
Sbjct:   262 SQACFDPNAAKTL---WERMDAAE 282

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000044232 AN1850 [Emericella nidulans (taxid:162425)]

 Score = 179 (68.1 bits), Expect = 7.7e-19, Sum P(2) = 7.7e-19
 Identities = 42/138 (30%), Positives = 74/138 (53%)

Query:   259 LDGLNWEVLVVNEP-VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXXXXX 317
             +DG +W+V V+ +  ++NAF LPGGK+ VFTG+L   + +  +A ++G            
Sbjct:   186 IDGADWKVHVIKDDNMVNAFVLPGGKVFVFTGILPICKDEDGLAAVLGHEIAHVVAHHTG 245

Query:   318 XGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRL----PFSRKMEMEADYIGLLLIASS 373
               ++ N  F  + +I    ++ D+   + +L L L    P SR  E EAD IGL++++ +
Sbjct:   246 ERMSNN--FVTMGVIFLAALLFDISGNIPSLLLNLMYSLPNSRTQEAEADNIGLMMMSKA 303

Query:   374 GYDPRVAPKFTRSWVKLQ 391
              ++P  A  F   W ++Q
Sbjct:   304 CFNPEAAVDF---WARMQ 318

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

CGD|CAL0001997 orf19.3827 [Candida albicans (taxid:5476)]

 Score = 150 (57.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 36/130 (27%), Positives = 64/130 (49%)

Query:   257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXX 314
             +HL  L WE+ ++    +  NAF LP GKI +F+ ++   + +  +AT++          
Sbjct:   134 NHLKSLKWEINIIQNDSLPPNAFILPNGKIFIFSSIMPICKNEDGLATVLSHELSHQLAQ 193

Query:   315 XXXXGITKNLWFAILQLILYQFVMPDVVNTMSTL-FLRLPFSRKMEMEADYIGLLLIASS 373
                  ++K   + +L  ILY        N +     L +  SR+ME EAD+IG  L+A +
Sbjct:   194 HSSEQLSKQPIYMVLSTILYTITGVSWFNDLLINGVLTMSASREMESEADHIGCELLARA 253

Query:   374 GYDPRVAPKF 383
              ++P+ +  F
Sbjct:   254 CFNPQESINF 263

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|H7BZX2 OMA1 "Metalloendopeptidase OMA1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
 Identities = 43/146 (29%), Positives = 70/146 (47%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXXXXX--XG 319
             +NW + VV+ P+INAF LP G++ VFTG L       +++ ++G               G
Sbjct:   125 INWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAG 184

Query:   320 ITKNLWF-AILQLILYQFVMP-D--------VVNTMSTLFLRLPFSRKMEMEADYIGLLL 369
             +   L F  ++ L +   + P D        + + +       P+SRK+E EAD IGLLL
Sbjct:   185 MVHLLDFLGMIFLTMIWAICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIGLLL 244

Query:   370 IASSGYDPRVAPKFTRSWVKLQAIQS 395
              A +  D R +  F   W +++ + S
Sbjct:   245 AAKACADIRASSVF---WQQMEFVDS 267

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

DICTYBASE|DDB_G0289335 DDB_G0289335 "Metalloendopeptidase OMA1, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 163 (62.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 51/166 (30%), Positives = 75/166 (45%)

Query:   220 ERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL 279
             E G  E K    D  L +    Q+R +   K +   T   D L WE  VVN  V+NA  L
Sbjct:   397 EMGYEEMKTQLSDYFLPENNALQNRVREVAKRIIDVTDRPD-LAWECHVVNSEVVNACVL 455

Query:   280 PGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXXXXXXGIT-KNLWFAILQLILYQFVM 338
             P GKI VF+ L +   ++ E+A++I               ++   L +  L L     V 
Sbjct:   456 PNGKIFVFSKLFDICESEDELASVISHEIGHAVARHAAEHLSISKLGYMFLTLTR-GLVG 514

Query:   339 PDVVNTMSTLF----LRLPFSRKMEMEADYIGLLLIASSGYDPRVA 380
               +   ++T+F    L L +SR  E+EAD IGL  +  + Y+P  A
Sbjct:   515 ETITGNLTTMFSANLLNLRYSRIQEIEADAIGLEFMVKANYNPYAA 560

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|Q96E52 OMA1 "Metalloendopeptidase OMA1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 43/146 (29%), Positives = 70/146 (47%)

Query:   262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXXXXX--XG 319
             +NW + VV+ P+INAF LP G++ VFTG L       +++ ++G               G
Sbjct:   283 INWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAG 342

Query:   320 ITKNLWF-AILQLILYQFVMP-D--------VVNTMSTLFLRLPFSRKMEMEADYIGLLL 369
             +   L F  ++ L +   + P D        + + +       P+SRK+E EAD IGLLL
Sbjct:   343 MVHLLDFLGMIFLTMIWAICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIGLLL 402

Query:   370 IASSGYDPRVAPKFTRSWVKLQAIQS 395
              A +  D R +  F   W +++ + S
Sbjct:   403 AAKACADIRASSVF---WQQMEFVDS 425

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0034982 "mitochondrial protein processing" evidence=IEA

GO:0042407 "cristae formation" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0006950 "response to stress" evidence=IDA

GO:0004222 "metalloendopeptidase activity" evidence=IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0006006 "glucose metabolic process" evidence=IMP

GO:0097009 "energy homeostasis" evidence=IMP

GO:0002024 "diet induced thermogenesis" evidence=IMP

UNIPROTKB|Q9KM08 VC_A0581 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 155 (59.6 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
 Identities = 45/125 (36%), Positives = 63/125 (50%)

Query:   264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXXXXXXGITKN 323
             WEV+V     +NAF LPGGKI V+TGLL+      ++AT+IG              ++++
Sbjct:    84 WEVVVFESDQVNAFALPGGKIGVYTGLLKVAVNQDQLATVIGHEIAHVLSNHSNERLSQS 143

Query:   324 -LWFAILQLILYQFVMPDVVN----TMSTLFLR------LPFSRKMEMEADYIGLLLIAS 372
              L  A LQL        +       TMS L +       LP+ R  E EAD +GL L+A 
Sbjct:   144 QLANAGLQLTDIAIGASEYAQYRNLTMSALGVGVQYGVILPYGRSQESEADILGLALMAR 203

Query:   373 SGYDP 377
             +G+DP
Sbjct:   204 AGFDP 208

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_A0581 VC_A0581 "lipoprotein, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 155 (59.6 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
 Identities = 45/125 (36%), Positives = 63/125 (50%)

Query:   264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXXXXXXGITKN 323
             WEV+V     +NAF LPGGKI V+TGLL+      ++AT+IG              ++++
Sbjct:    84 WEVVVFESDQVNAFALPGGKIGVYTGLLKVAVNQDQLATVIGHEIAHVLSNHSNERLSQS 143

Query:   324 -LWFAILQLILYQFVMPDVVN----TMSTLFLR------LPFSRKMEMEADYIGLLLIAS 372
              L  A LQL        +       TMS L +       LP+ R  E EAD +GL L+A 
Sbjct:   144 QLANAGLQLTDIAIGASEYAQYRNLTMSALGVGVQYGVILPYGRSQESEADILGLALMAR 203

Query:   373 SGYDP 377
             +G+DP
Sbjct:   204 AGFDP 208

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038511001 SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (434 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	395
pfam01435	223	pfam01435, Peptidase_M48, Peptidase family M48	4e-26
COG4784	479	COG4784, COG4784, Putative Zn-dependent protease [	4e-22
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	1e-20
COG0501	302	COG0501, HtpX, Zn-dependent protease with chaperon	2e-18

>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48

 Score =  104 bits (261), Expect = 4e-26
 Identities = 57/181 (31%), Positives = 80/181 (44%), Gaps = 37/181 (20%)

Query: 235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLL 291
           L +  +Q+     +     + ++      WEV VV+ P  NAF L GGK   +VV TGLL
Sbjct: 29  LRNARLQR---VVER---LADSAGAGFPPWEVYVVDSPQPNAFALGGGKNKRVVVTTGLL 82

Query: 292 EHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMS----- 346
               T+ E+A ++GHE+ H  ARH+ E    ++   +L  +L       +          
Sbjct: 83  LA-LTEDELAAVLGHEIGHIKARHSVE----SMSQGLLLNLLLLLGAAALGGRALGFNAN 137

Query: 347 ----------TLFLRLPFSRKMEMEADYIGLLL-----IASSGYDPRVAPKFTRSWVKLQ 391
                        L LP+SRK E EAD  G  L     +A +GY PR A KF     KL 
Sbjct: 138 GFLTALGIFLLQLLLLPYSRKQEYEADEAGARLGGDKDLARAGYKPRAAVKF---LAKLA 194

Query: 392 A 392
           A
Sbjct: 195 A 195

Length = 223

>gnl|CDD|227123 COG4784, COG4784, Putative Zn-dependent protease [General function prediction only]

 Score = 97.2 bits (242), Expect = 4e-22
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 22/190 (11%)

Query: 211 TLRALSENSERGKTEGKWHQE------DEILDDKWVQQSRKKGQEKGLQSATSHLDGLNW 264
           T+  + +N    +   + H         E  D K  +   +     G  +A S      +
Sbjct: 32  TVDNVQKNDPLAQMGARQHPRILATYGGEYRDPKLERMVARIV---GALTAVSENPQQTY 88

Query: 265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARH--------A 316
            + ++N P INAF LPGG + +  GLL      +E+A ++ HE+ H  A H        A
Sbjct: 89  RITILNSPNINAFALPGGYLYITRGLLALANDSSEVAAVLAHEMGHVTANHGIQRQQREA 148

Query: 317 AEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYD 376
           AE I       ++  +L              L L   FSR  E++AD IG+ ++  +GYD
Sbjct: 149 AEVIASR----VVAEVLGSDAAGKQALIRGKLRLA-QFSRNQELQADAIGIKMLGEAGYD 203

Query: 377 PRVAPKFTRS 386
           P  A +F +S
Sbjct: 204 PYAAARFLQS 213

Length = 479

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR 314
           A + L    +   +VN+  INAF  PGG +VV TGLL     ++E+A +I HE+ H   R
Sbjct: 85  AAADLVKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAENESELAGVIAHEIGHVAQR 144

Query: 315 HAAEGITKN------LWFAILQLILYQFVMPD-----VVNTMSTLFLR-LPFSRKMEMEA 362
           H A  + +           +L  IL      D     +   ++      L FSR+ E EA
Sbjct: 145 HLARSMEQQQRAAPMAIAGMLLGILAALAGADAGMAGIAGALAGAAQGQLNFSRQNEQEA 204

Query: 363 DYIGLLLIASSGYDPRVAPKF 383
           D IG+  +  +GYDP+  P+F
Sbjct: 205 DRIGITTLVRAGYDPQGMPEF 225

Length = 484

>gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

 Score = 85.0 bits (210), Expect = 2e-18
 Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 20/134 (14%)

Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAH 310
           A         EV ++  P  NAF L G    G++VV TGLL+    D E+  ++ HE+ H
Sbjct: 109 ARQAGIPHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGH 167

Query: 311 AVARHAAEGITKNLWFAILQLILYQFVMP---------------DVVNTMSTLFLRLPFS 355
              RH    +T     A   ++L    +                 ++       L L FS
Sbjct: 168 IKNRHTLVRLTLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLATLLVLAFS 227

Query: 356 RKMEMEADYIGLLL 369
           RK E EAD     L
Sbjct: 228 RKREYEADRFAAKL 241

Length = 302

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	395
KOG2661	424	consensus Peptidase family M48 [Posttranslational	100.0
COG4783	484	Putative Zn-dependent protease, contains TPR repea	100.0
COG4784	479	Putative Zn-dependent protease [General function p	99.97
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	99.87
COG0501	302	HtpX Zn-dependent protease with chaperone function	99.85
PRK02870	336	heat shock protein HtpX; Provisional	99.83
PRK01345	317	heat shock protein HtpX; Provisional	99.82
PRK03982	288	heat shock protein HtpX; Provisional	99.82
PRK03001	283	M48 family peptidase; Provisional	99.79
PRK03072	288	heat shock protein HtpX; Provisional	99.78
PRK04897	298	heat shock protein HtpX; Provisional	99.76
PRK05457	284	heat shock protein HtpX; Provisional	99.73
PRK02391	296	heat shock protein HtpX; Provisional	99.72
PRK01265	324	heat shock protein HtpX; Provisional	99.7
KOG2719	428	consensus Metalloprotease [General function predic	98.91
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	97.55
PF06114	122	DUF955: Domain of unknown function (DUF955); Inter	97.35
PF04228	292	Zn_peptidase: Putative neutral zinc metallopeptida	97.25
PF13203	292	DUF2201_N: Putative metallopeptidase domain	96.65
COG4219	337	MecR1 Antirepressor regulating drug resistance, pr	95.74
PF10463	206	Peptidase_U49: Peptidase U49; InterPro: IPR019504	95.32
PRK09672	305	phage exclusion protein Lit; Provisional	94.66
PF13699	79	DUF4157: Domain of unknown function (DUF4157)	92.63
smart00731	146	SprT SprT homologues. Predicted to have roles in t	91.42
PF12388	211	Peptidase_M57: Dual-action HEIGH metallo-peptidase	90.7
PRK04351	149	hypothetical protein; Provisional	90.39
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	90.01
COG1451	223	Predicted metal-dependent hydrolase [General funct	89.12
COG2321	295	Predicted metalloprotease [General function predic	88.63
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	88.53
PF04298	222	Zn_peptidase_2: Putative neutral zinc metallopepti	88.24
COG3590	654	PepO Predicted metalloendopeptidase [Posttranslati	87.26
PF01863	205	DUF45: Protein of unknown function DUF45; InterPro	86.26
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	84.32
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	83.95
cd04268	165	ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_	82.38
PRK04860	160	hypothetical protein; Provisional	80.07

>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-73  Score=551.70  Aligned_cols=319  Identities=34%  Similarity=0.525  Sum_probs=291.4

Q ss_pred             ChhhhhhhHHHHHHhh-cccCCCCCCCcccccc-ccccCC----CCCccccccccccceecccccccccCCCCCCCCcce
Q 016105            1 MAYYRRAKAALDAFRN-LSSKAVPKSPVQESCS-RVYSNG----SANSAKFSSGFYSYSCISQRLRNSYCNPNFNTAKRY   74 (395)
Q Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   74 (395)
                      |.|||+.|+.+|.+++ ++++|.|++....+.+ .+.++.    .+...+.+.+++++.+.-+.++..-+|||.+.+.+|
T Consensus        44 ~~~~~~~~~~~~~l~~~~~~~i~~~t~~~t~~n~~~~~~~~~~~~t~v~S~~v~l~~~~~s~Rn~Ng~~y~rFqsnp~~y  123 (424)
T KOG2661|consen   44 HFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLSVLLPLSPASIRNINGHTYPRFQSNPVPY  123 (424)
T ss_pred             eeeeeecchhcccccccCCccceecccccceehhhhhhccchhhhhcccccccccccchhhhhccCccccchhhcCCccH
Confidence            6899999999999999 9999999999987776 333222    344467789999999999999999999999999999


Q ss_pred             eeeecceeeeeccCCCCccccCCchhHHHHHHHHHHHHHHHhhccCcCCCccchhccCCCHHHHHHHHHHHHHHHHHHhc
Q 016105           75 YYVDRYHVQHFRPRGPRKWLQNPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFK  154 (395)
Q Consensus        75 y~~~~~~~~~f~~rg~~~~~~~~r~~~~~v~~g~g~~~~~y~~~le~vP~TgR~r~~lvs~~~e~~lg~~~~~qi~~~~~  154 (395)
                      |+.+++.|+||+|++..+|++++|++++++.+|+.++++|||+|+|++|+|||+||+++|.++|.-||+.+|+++++|++
T Consensus       124 s~~~r~~~~sfkpn~~dk~f~n~rk~f~~lf~G~~~~~vfyfthlE~~Pit~Rsrfillskp~ekllge~~ye~im~eyq  203 (424)
T KOG2661|consen  124 SLMIRKWWQSFKPNKKDKVFENIRKNFWKLFLGLLLFVVFYFTHLEVSPITGRSRFILLSKPQEKLLGELEYEAIMEEYQ  203 (424)
T ss_pred             HHHHHHHHHhcCCCCccchhhhHHHHHHHHHhhccceEEEEEeeeeeeccCCcceeeeccCHHHHHhhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999875566899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCChhhHHHHHHHHHHHHHHHhcccccccccccCCCCccccccccchhhhhHHhhhhcccccccccCCccccccc
Q 016105          155 GKILPAIHPDSVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEI  234 (395)
Q Consensus       155 ~~ilP~~~p~~~rV~~I~~rIi~a~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  234 (395)
                      +++||+.||.+.+|++|.++||+++.                                                      
T Consensus       204 ~~mLp~~hp~sl~V~~vlk~iIea~~------------------------------------------------------  229 (424)
T KOG2661|consen  204 NDMLPEKHPRSLAVKEVLKHIIEANK------------------------------------------------------  229 (424)
T ss_pred             CccCCcCCchhhHHHHHHHHHHHHhc------------------------------------------------------
Confidence            99999999999999999999999741                                                      


Q ss_pred             cchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCcceeeeCCCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhh
Q 016105          235 LDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR  314 (395)
Q Consensus       235 l~d~~v~~~~~~g~~~~~~~~~~~l~~~~w~v~Vi~s~~vNAFalPGG~I~V~tGLL~~~~nddELAaVLaHEigHv~~r  314 (395)
                                          +...+++.+|+++||+||.+||||||||+|||++|+|..|++||+||+|||||+||.++|
T Consensus       230 --------------------~~~slsgIkWeihVVndPipNAFvLPgGKvfVFtgiLn~ck~ddglAtvLgHE~aHaVar  289 (424)
T KOG2661|consen  230 --------------------DVPSLSGIKWEIHVVNDPIPNAFVLPGGKVFVFTGILNSCKDDDGLATVLGHEIAHAVAR  289 (424)
T ss_pred             --------------------cCCcccCceeEEEEecCCCCceeeccCCeEEEEechhhcccChHHHHHHHHHHHHHHHHH
Confidence                                001256789999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcc
Q 016105          315 HAAEGITKNLWFAILQLILYQFVMPDVVN-TMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQAI  393 (395)
Q Consensus       315 H~~e~~s~~~~~~il~~~l~~~~~~d~~~-~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~~~  393 (395)
                      |.+|.+++..+.++++++++.+..++..+ .+...++.+||||++|+|||+||+.+|++|||||+++..+||+|+..++.
T Consensus       290 H~AEki~k~~~~siLgLvlyt~~~a~~~n~~Ll~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tvwErM~~~egq  369 (424)
T KOG2661|consen  290 HAAEKIGKVHLLSILGLVLYTMIWAICPNDKLLEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTVWERMEFVEGQ  369 (424)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhhccchHHHHHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHHHHHHHhhhh
Confidence            99999999999999999988776665444 67778899999999999999999999999999999999999999998875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=100.00  E-value=3.7e-32  Score=277.19  Aligned_cols=189  Identities=30%  Similarity=0.434  Sum_probs=151.1

Q ss_pred             cCCCccchhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-hHHHHHHHHHHHHHHHhcccccccccccCCCCccc
Q 016105          121 TVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTET  199 (395)
Q Consensus       121 ~vP~TgR~r~~lvs~~~e~~lg~~~~~qi~~~~~~~ilP~~~p~-~~rV~~I~~rIi~a~~~~l~~~~~~~~~g~~~~~~  199 (395)
                      ..|.+|....-.+|+++|.++|...+.|+..+  ..+.  .||. ...|..++.+|+++.                    
T Consensus        32 ~lp~ig~~~~s~ls~~qev~~g~~~~~Qlr~~--~~~i--~D~el~~yv~~~g~rL~~~a--------------------   87 (484)
T COG4783          32 LLPDIGVSAGSTLSPAQEVALGDPANAQLRGS--VPLI--RDPELEEYVNSLGQRLAAAA--------------------   87 (484)
T ss_pred             hcchhhhhhhhcCCHHHHHHhhHHHHHHhccC--CCCc--CCHHHHHHHHHHHHHHHHhc--------------------
Confidence            46888999999999999999999999998876  3344  3566 557888888887641                    


Q ss_pred             cccccchhhhhHHhhhhcccccccccCCccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCcceeee
Q 016105          200 DFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCL  279 (395)
Q Consensus       200 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~d~~v~~~~~~g~~~~~~~~~~~l~~~~w~v~Vi~s~~vNAFal  279 (395)
                                                                                ..+..+++|++|+|+.+|||++
T Consensus        88 ----------------------------------------------------------~~~~~~f~f~lV~d~~iNAFA~  109 (484)
T COG4783          88 ----------------------------------------------------------DLVKTPFTFFLVNDDSINAFAT  109 (484)
T ss_pred             ----------------------------------------------------------CCCCCCeEEEEecCCccchhhc
Confidence                                                                      2345689999999999999999


Q ss_pred             CCCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHH------HHHHHHHHHHHHhhhhH-----HHHHH-HH
Q 016105          280 PGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKN------LWFAILQLILYQFVMPD-----VVNTM-ST  347 (395)
Q Consensus       280 PGG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~------~~~~il~~~l~~~~~~d-----~~~~l-~~  347 (395)
                      |||+|+|+||||..++||+|||+||||||||+..||.++.|.+.      .+++++..++....+++     +++.+ +.
T Consensus       110 ~Gg~v~vntGLll~ae~esElagViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~~~ag~a~iag~~a~~  189 (484)
T COG4783         110 PGGYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAGADAGMAGIAGALAGA  189 (484)
T ss_pred             CCceEEEehHHHHhcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhCccccHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999988763      23333333333322222     11111 12


Q ss_pred             HHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 016105          348 LFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQ  391 (395)
Q Consensus       348 ~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~  391 (395)
                      ..-.+.|||.+|.|||++|+.+|.++||||++|++||+||....
T Consensus       190 ~~g~L~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~  233 (484)
T COG4783         190 AQGQLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFFERLADQL  233 (484)
T ss_pred             hhhhhhcchhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHH
Confidence            23467899999999999999999999999999999999998744

>COG4784 Putative Zn-dependent protease [General function prediction only]

Probab=99.97  E-value=1.9e-31  Score=261.85  Aligned_cols=197  Identities=24%  Similarity=0.377  Sum_probs=157.8

Q ss_pred             hccCcCCCccchhccCCCHHHHHH-HHHHHHHHHHHHhcCCCCCCCChhh-HHHHHHHHHHHHHHHhcccccccccccCC
Q 016105          117 GNLETVPYTKRTHFVLLSKAVERQ-LGESQFQQMKAAFKGKILPAIHPDS-VRVRLIAKDIIEALQRGLKHETVWSDMGY  194 (395)
Q Consensus       117 ~~le~vP~TgR~r~~lvs~~~e~~-lg~~~~~qi~~~~~~~ilP~~~p~~-~rV~~I~~rIi~a~~~~l~~~~~~~~~g~  194 (395)
                      ..|...|-++-.-+..|++.++.. ||..+-..|+++|++..-   ||-. +.|.+|+.++...                
T Consensus        20 ~~~~~~Ps~~p~~v~~v~~n~~laqmgar~hprIla~yggeY~---D~Kler~Vari~g~lt~~----------------   80 (479)
T COG4784          20 YESGVQPSDNPQTVDNVQKNDPLAQMGARQHPRILATYGGEYR---DPKLERMVARIVGALTAV----------------   80 (479)
T ss_pred             cccccCCCCCcchHHHhhccChHhHhhhhhChhHHHhcCCccC---CHHHHHHHHHHHhHhhhh----------------
Confidence            367778999998899999887665 999999999999998753   4443 3455554443321                


Q ss_pred             CCccccccccchhhhhHHhhhhcccccccccCCccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCc
Q 016105          195 ASTETDFVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVI  274 (395)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~d~~v~~~~~~g~~~~~~~~~~~l~~~~w~v~Vi~s~~v  274 (395)
                                                                                    ++.++..|.|.|+|+|.+
T Consensus        81 --------------------------------------------------------------S~~p~q~YriTilnSP~I   98 (479)
T COG4784          81 --------------------------------------------------------------SENPQQTYRITILNSPNI   98 (479)
T ss_pred             --------------------------------------------------------------ccCCCceEEEEEecCCCc
Confidence                                                                          233467899999999999


Q ss_pred             ceeeeCCCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHH
Q 016105          275 NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVV----NTMSTLFL  350 (395)
Q Consensus       275 NAFalPGG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~~~~~d~~----~~l~~~~~  350 (395)
                      |||+||||++||+.|||..+.++.|||+||+|||||+.++|..++.++.....++.-++......+.+    ...++ +.
T Consensus        99 NAFALPGGYlYitRGLlAland~sEvAAVl~HEmgHVtAnHgi~rQ~~e~a~~ia~rvva~vl~~~~agk~A~~rGk-lr  177 (479)
T COG4784          99 NAFALPGGYLYITRGLLALANDSSEVAAVLAHEMGHVTANHGIQRQQREAAEVIASRVVAEVLGSDAAGKQALIRGK-LR  177 (479)
T ss_pred             cccccCCceEEEehhHHHHcCCHHHHHHHHHhhhhheecchhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHhhhh-HH
Confidence            99999999999999999999999999999999999999999999988765555555444433333322    22333 45


Q ss_pred             hChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcccC
Q 016105          351 RLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQAIQS  395 (395)
Q Consensus       351 ~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~~~~~  395 (395)
                      ...|||.||.|||.||.+++.+|||||.+++.|++.|+.++++++
T Consensus       178 la~fsRnqELqAD~iG~~~lgeAGYDP~A~~rfl~sm~ay~~F~s  222 (479)
T COG4784         178 LAQFSRNQELQADAIGIKMLGEAGYDPYAAARFLQSMAAYTDFRS  222 (479)
T ss_pred             HhhhccchhhhhhhhhHHHHHhcCCChHHHHHHHHHHHhhhhhcc
Confidence            678999999999999999999999999999999999999998864

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=99.87  E-value=2.9e-22  Score=185.79  Aligned_cols=129  Identities=30%  Similarity=0.428  Sum_probs=89.6

Q ss_pred             CCCCeEEEEEeCCCcceeeeCCCe---EEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 016105          260 DGLNWEVLVVNEPVINAFCLPGGK---IVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQF  336 (395)
Q Consensus       260 ~~~~w~v~Vi~s~~vNAFalPGG~---I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~~  336 (395)
                      ....|+++|++++.+|||++|+|.   |+|++||++.+ |+|||++|||||+||+..+|....+....+..++..++...
T Consensus        47 ~~~~~~v~v~~~~~~NA~~~g~~~~~~I~v~~~ll~~~-~~~el~aVlaHElgH~~~~h~~~~~~~~~~~~~~~~~~~~~  125 (226)
T PF01435_consen   47 GIPPPRVYVIDSPSPNAFATGGGPRKRIVVTSGLLESL-SEDELAAVLAHELGHIKHRHILKSLLISLLLSILFFALLAL  125 (226)
T ss_dssp             TSS--EEEEE--SSEEEEEETTTC--EEEEEHHHHHHS-SHHHHHHHHHHHHHHHHTTHCCCCCCHHH-HHHHHHHHHT-
T ss_pred             CCCCCeEEEEcCCCCcEEEEccCCCcEEEEeChhhhcc-cHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH
Confidence            344689999999999999999998   99999999665 99999999999999999999988755544433332221111


Q ss_pred             hh--h---HHH------HH---HHHHHHhChhchHHHHHHHHHHHHH------HHhcCCChHHHHHHHHHHHh
Q 016105          337 VM--P---DVV------NT---MSTLFLRLPFSRKMEMEADYIGLLL------IASSGYDPRVAPKFTRSWVK  389 (395)
Q Consensus       337 ~~--~---d~~------~~---l~~~~~~l~~SR~~E~EAD~iGl~l------makAGydP~aav~~~~rL~~  389 (395)
                      ..  .   ...      ..   .........+||.+|+|||.+|.++      |+++||+|..+..+|++|.+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~E~~AD~~a~~~~~~~~~l~~a~~~~~~~~~~l~~l~~  198 (226)
T PF01435_consen  126 LIGSMSLFSAFGFIDILGILIAFLFQLLTNAFSRRQEYEADRYAARLGGDPALLARALYKPAAAISALEKLAE  198 (226)
T ss_dssp             ----HHHHHHHH----------HHSTT------HHHHHHHHHHHHHH------HHHTTS-TTHHHHHHHHHT-
T ss_pred             HhhhhhhhhhhhhcccchhhHHHHHHHhhcchhHHHHHHHHHHHHHhcCCcHHHHHhCCCHHHHHHHHHHHHH
Confidence            00  0   000      00   1223467899999999999999999      99999999999999999976

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=7.1e-21  Score=184.62  Aligned_cols=125  Identities=30%  Similarity=0.399  Sum_probs=94.5

Q ss_pred             CCCeEEEEEeCCCcceeeeCC----CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HH
Q 016105          261 GLNWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL-YQ  335 (395)
Q Consensus       261 ~~~w~v~Vi~s~~vNAFalPG----G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l-~~  335 (395)
                      +..|+++|++++.+||||+|+    |+|+|++||++.+ |||||++|||||+||+.+||+..++....+...+...+ ..
T Consensus       115 ~~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl~~l-~~dEl~aVlaHElgHi~~rd~~~~~~~~~~~~~~~~~~~~~  193 (302)
T COG0501         115 PHMPEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLL-NDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATL  193 (302)
T ss_pred             CCCCeeEEecCCCccceecCCCCCCeeEEecHHHHhhC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999998    7999999999977 99999999999999999999998654332221111110 00


Q ss_pred             hh----------h----hHHHHHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 016105          336 FV----------M----PDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQ  391 (395)
Q Consensus       336 ~~----------~----~d~~~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~  391 (395)
                      ..          .    ..+........+.++|||.+|++||+.|.+++.     |+.+...++|+....
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~l~~-----~~~l~~aL~kl~~~~  258 (302)
T COG0501         194 ALAAGLLGEAALALLLLLLLLALFLATLLVLAFSRKREYEADRFAAKLTG-----PEKLASALQKLARLS  258 (302)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhchhhccC-----hHHHHHHHHHHHhhh
Confidence            00          0    011112233467899999999999999999973     889999999987643

>PRK02870 heat shock protein HtpX; Provisional

Probab=99.83  E-value=6.3e-19  Score=176.57  Aligned_cols=124  Identities=23%  Similarity=0.318  Sum_probs=92.1

Q ss_pred             CeEEEEEeCCCcceeee----CCCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HH
Q 016105          263 NWEVLVVNEPVINAFCL----PGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLI----LY  334 (395)
Q Consensus       263 ~w~v~Vi~s~~vNAFal----PGG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~----l~  334 (395)
                      .++++|++++.+||||+    |++.|+|++||++.+ |+|||++||||||||+.++|....+....+..++..+    +.
T Consensus       133 ~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~~L-~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~~~~~~~  211 (336)
T PRK02870        133 MPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLEKL-DRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIVADFLFY  211 (336)
T ss_pred             CCeEEEEcCCCCceEEecCCCCCcEEEEehHHhhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999    478999999999998 9999999999999999999986554332222211111    11


Q ss_pred             Hhhhh-----H-----------HHHHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 016105          335 QFVMP-----D-----------VVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQ  391 (395)
Q Consensus       335 ~~~~~-----d-----------~~~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~  391 (395)
                      ...+.     +           +...+...++.+.+||..|++||+.|.+++    .||.+.++.++|+.+..
T Consensus       212 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~ll~~~iSR~rEy~AD~~Aa~lt----g~p~aLasAL~KL~~~~  280 (336)
T PRK02870        212 SFMGNRRNSGANRARMIILILRYVLPILTVLLMLFLSRTREYMADAGAVELM----RDNEPMARALQKISNDH  280 (336)
T ss_pred             HHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----CCHHHHHHHHHHHHhcc
Confidence            01000     0           011122345678899999999999999987    59999999999997643

>PRK01345 heat shock protein HtpX; Provisional

Probab=99.82  E-value=1.9e-19  Score=179.12  Aligned_cols=123  Identities=20%  Similarity=0.283  Sum_probs=91.2

Q ss_pred             eEEEEEeCCCcceeeeCC----CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--Hhh
Q 016105          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILY--QFV  337 (395)
Q Consensus       264 w~v~Vi~s~~vNAFalPG----G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~--~~~  337 (395)
                      .+|+|++++.+|||+++.    +.|+|++|||+.+ |+|||++||||||||+.++|....+....+..++..+..  .+.
T Consensus        85 p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L-~~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~  163 (317)
T PRK01345         85 PKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRL-SPEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFF  163 (317)
T ss_pred             CcEEEEcCCCcceEEecCCCCCeEEEechHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999963    4799999999998 899999999999999999999876543332222211110  000


Q ss_pred             hh-----------------HHHHHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 016105          338 MP-----------------DVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQ  391 (395)
Q Consensus       338 ~~-----------------d~~~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~  391 (395)
                      ..                 .+...+...++.+.|||.+|+|||++|.+++    .||++++++++||.+..
T Consensus       164 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~SR~rE~~AD~~A~~lt----g~p~~L~~AL~KL~~~~  230 (317)
T PRK01345        164 GGNRENNNGPLGLVGTLAAMIVAPLAAMLVQMAISRTREYAADRRGAEIC----GNPLWLASALGKIERGA  230 (317)
T ss_pred             cCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhh
Confidence            00                 0111122334677899999999999999975    59999999999998753

>PRK03982 heat shock protein HtpX; Provisional

Probab=99.82  E-value=3.5e-19  Score=174.62  Aligned_cols=122  Identities=19%  Similarity=0.238  Sum_probs=91.1

Q ss_pred             eEEEEEeCCCcceeeeC----CCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----HH
Q 016105          264 WEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL----YQ  335 (395)
Q Consensus       264 w~v~Vi~s~~vNAFalP----GG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l----~~  335 (395)
                      .+++|++++.+|||+++    +|.|+|++||++.+ |+|||++|||||+||+.++|....+....+..++..+.    ..
T Consensus        86 p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l-~~~El~AVlAHElgHi~~~h~~~~~~~~~~~~~~~~l~~~~~~~  164 (288)
T PRK03982         86 PKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLL-NEDELEGVIAHELTHIKNRDTLIQTIAATLAGAIMYLAQWLSWG  164 (288)
T ss_pred             CeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999995    46789999999999 99999999999999999999988765443222111100    00


Q ss_pred             hh-h---------hHHH--------HHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 016105          336 FV-M---------PDVV--------NTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKL  390 (395)
Q Consensus       336 ~~-~---------~d~~--------~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~  390 (395)
                      .. .         +...        ..+...++.+.|||.+|+|||+.|.++.    +||.+++++++||++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~SR~~E~~AD~~A~~~~----~~p~~l~~aL~kL~~~  233 (288)
T PRK03982        165 LWFGGGGRDDRNGGNPIGSLLLIILAPIAATLIQFAISRQREFSADEGGARLT----GNPLALANALQKLEKG  233 (288)
T ss_pred             HHhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHh----CCHHHHHHHHHHHHhh
Confidence            00 0         0011        1112334567899999999999999964    7999999999999875

>PRK03001 M48 family peptidase; Provisional

Probab=99.79  E-value=2.1e-18  Score=168.77  Aligned_cols=123  Identities=21%  Similarity=0.290  Sum_probs=91.3

Q ss_pred             eEEEEEeCCCcceeeeCC----CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHh
Q 016105          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL---YQF  336 (395)
Q Consensus       264 w~v~Vi~s~~vNAFalPG----G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l---~~~  336 (395)
                      .+++|++++.+|||+++.    +.|+|++||++.+ |+|||++||||||||+.++|....+.......++..+.   ..+
T Consensus        85 p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHi~~~h~~~~~~~~~~~~~~~~~~~~~~~~  163 (283)
T PRK03001         85 PKVYLINEDQPNAFATGRNPEHAAVAATTGILRVL-SEREIRGVMAHELAHVKHRDILISTISATMAGAISALANFAMFF  163 (283)
T ss_pred             CeEEEecCCCcceEEecCCCCCeEEEecHHHHhhC-CHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            389999999999999974    3699999999998 99999999999999999999987654432222221110   000


Q ss_pred             hh-----h--H--------HHHHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 016105          337 VM-----P--D--------VVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQ  391 (395)
Q Consensus       337 ~~-----~--d--------~~~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~  391 (395)
                      ..     .  +        +...+...++.+.|||.+|+|||+.|.++    ++||.+++++++||.+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E~~AD~~a~~l----~~~p~~l~~AL~Kl~~~~  229 (283)
T PRK03001        164 GGRDENGRPVNPIAGIAVAILAPLAASLIQMAISRAREFEADRGGARI----SGDPQALASALDKIHRYA  229 (283)
T ss_pred             cCCCccccccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH----hCCHHHHHHHHHHHHhhh
Confidence            00     0  0        01111223456789999999999999997    479999999999998754

>PRK03072 heat shock protein HtpX; Provisional

Probab=99.78  E-value=4.8e-18  Score=166.96  Aligned_cols=123  Identities=19%  Similarity=0.241  Sum_probs=90.0

Q ss_pred             CeEEEEEeCCCcceeeeCC----CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HH
Q 016105          263 NWEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL---YQ  335 (395)
Q Consensus       263 ~w~v~Vi~s~~vNAFalPG----G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l---~~  335 (395)
                      ..+++|++++.+|||+.+.    +.|+|++||++.+ |+|||++|||||+||+.++|.........+..++..+.   ..
T Consensus        87 ~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~i~~l~~~~~~  165 (288)
T PRK03072         87 MPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQIL-NERELRGVLGHELSHVYNRDILISSVAGALASVITYLANMAMF  165 (288)
T ss_pred             CCCEEEecCCCCceEEecCCCCCcEEEecHHHHHhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999952    2489999999999 99999999999999999999987654332222211110   00


Q ss_pred             hh---h------hHH--------HHHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 016105          336 FV---M------PDV--------VNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKL  390 (395)
Q Consensus       336 ~~---~------~d~--------~~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~  390 (395)
                      ..   .      +..        ...+....+.+.|||.+|++||+.|.++.    .||++++++++||.+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SR~rE~~AD~~A~~l~----~~p~~La~AL~KL~~~  233 (288)
T PRK03072        166 AGMFGGRRDNDGPNPLALLLVSLLGPIAATVIQLAISRSREYQADESGAELT----GDPLALASALRKISGG  233 (288)
T ss_pred             HHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHh----CCHHHHHHHHHHHHhc
Confidence            00   0      000        11112334567899999999999999984    6999999999999863

>PRK04897 heat shock protein HtpX; Provisional

Probab=99.76  E-value=1.8e-17  Score=163.58  Aligned_cols=123  Identities=21%  Similarity=0.258  Sum_probs=90.1

Q ss_pred             eEEEEEeCCCcceeeeC----CCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HH--
Q 016105          264 WEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLI---LY--  334 (395)
Q Consensus       264 w~v~Vi~s~~vNAFalP----GG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~---l~--  334 (395)
                      .++++++++.+|||+++    ++.|+|++||++.+ |+|||++|||||+||+.++|.........+..++..+   +.  
T Consensus        98 p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l-~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~~~~l~~~~~~~  176 (298)
T PRK04897         98 PRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIM-NREELEGVIGHEISHIRNYDIRLSTIAVALASAITLLSDIAGRM  176 (298)
T ss_pred             CcEEEecCCCCceEEeccCCCCcEEEeehHHHhhC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999997    35799999999999 9999999999999999999997654332221111110   00  


Q ss_pred             -Hhhh----------h--------------HHHHHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 016105          335 -QFVM----------P--------------DVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVK  389 (395)
Q Consensus       335 -~~~~----------~--------------d~~~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~  389 (395)
                       ....          +              .+...+...++.+.+||.+|++||+.|.+++    +||+++++.++||.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~lt----~~p~~La~AL~KL~~  252 (298)
T PRK04897        177 MWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVELT----RNPQGLISALEKISN  252 (298)
T ss_pred             HHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHh
Confidence             0000          0              0001112233567899999999999999976    899999999999976


Q ss_pred             hh
Q 016105          390 LQ  391 (395)
Q Consensus       390 ~~  391 (395)
                      ..
T Consensus       253 ~~  254 (298)
T PRK04897        253 SQ  254 (298)
T ss_pred             cc
Confidence            43

>PRK05457 heat shock protein HtpX; Provisional

Probab=99.73  E-value=1.7e-16  Score=155.83  Aligned_cols=123  Identities=24%  Similarity=0.290  Sum_probs=87.2

Q ss_pred             eEEEEEeCCCcceeeeCC----CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHH---HHHHHH-
Q 016105          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITK-NLWFAI---LQLILY-  334 (395)
Q Consensus       264 w~v~Vi~s~~vNAFalPG----G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~-~~~~~i---l~~~l~-  334 (395)
                      .+++|++++.+|||+++.    +.|+|++||++.+ |+|||++|||||+||+.++|....... .....+   +..++. 
T Consensus        95 p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~~~~~~~~~  173 (284)
T PRK05457         95 PEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNM-SRDEVEAVLAHEISHIANGDMVTMTLIQGVVNTFVIFLSRIIAQ  173 (284)
T ss_pred             CCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999984    3589999999999 999999999999999999998764221 111111   100000 


Q ss_pred             ---Hhhh-----hHH-----------HHHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhc
Q 016105          335 ---QFVM-----PDV-----------VNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQA  392 (395)
Q Consensus       335 ---~~~~-----~d~-----------~~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~~  392 (395)
                         ....     +.+           .......++.+.+||.+|++||..|.++.   |  |+++++.++|+.+...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ll~~~~SR~rEy~AD~~Aa~lt---g--p~~L~~AL~KL~~~~~  245 (284)
T PRK05457        174 IVDRFVSGNEEGNGIGYFIVSIVLEIVFGILASIIVMWFSRHREFRADAGGAKLA---G--REKMIAALQRLKTSYE  245 (284)
T ss_pred             HHHhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh---C--HHHHHHHHHHHHhhCc
Confidence               0000     000           00111224567899999999999999985   3  9999999999987543

>PRK02391 heat shock protein HtpX; Provisional

Probab=99.72  E-value=1.4e-16  Score=157.23  Aligned_cols=122  Identities=23%  Similarity=0.208  Sum_probs=87.8

Q ss_pred             eEEEEEeCCCcceeeeCC----CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----HH
Q 016105          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLIL----YQ  335 (395)
Q Consensus       264 w~v~Vi~s~~vNAFalPG----G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l----~~  335 (395)
                      .+++|++++.+|||+.+.    +.|+|++||++.+ |+|||.+|||||+||+.++|.........+..+...+.    ..
T Consensus        94 p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L-~~~El~aVlaHElgHi~~~di~~~~i~~~~~~~~~~l~~~~~~~  172 (296)
T PRK02391         94 PRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRL-DPDELEAVLAHELSHVKNRDVAVMTIASFLSTIAFLIVRWGFYF  172 (296)
T ss_pred             CcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            489999999999999963    3689999999999 89999999999999999999886543322221111110    00


Q ss_pred             hh----h-hH-----HH-------HHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 016105          336 FV----M-PD-----VV-------NTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKL  390 (395)
Q Consensus       336 ~~----~-~d-----~~-------~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~  390 (395)
                      ..    . .+     +.       .......+.+.+||..|++||+.|.++.    .||.+.++.++||.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~SR~rE~~AD~~Aa~lt----g~p~~LasAL~KL~~~  240 (296)
T PRK02391        173 GGFGGRGGGGGGGGILVVILVSLVVWAISFLLIRALSRYREFAADRGAAIIT----GRPSALASALMKISGR  240 (296)
T ss_pred             ccccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----CCHHHHHHHHHHHHcc
Confidence            00    0 00     00       0111223466799999999999999865    6999999999999863

>PRK01265 heat shock protein HtpX; Provisional

Probab=99.70  E-value=9.2e-16  Score=153.16  Aligned_cols=123  Identities=20%  Similarity=0.212  Sum_probs=89.3

Q ss_pred             eEEEEEeCCCcceeeeC----CCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----
Q 016105          264 WEVLVVNEPVINAFCLP----GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILY-----  334 (395)
Q Consensus       264 w~v~Vi~s~~vNAFalP----GG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~-----  334 (395)
                      .+++|++++.+|||+.+    ++.|+|++||++.+ |+|||.+|||||+||+.++|....+....+..++..+..     
T Consensus       101 p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l-~~~El~aVlAHElgHik~~d~~~~~~~~~i~~~~~~~~~~~~~~  179 (324)
T PRK01265        101 PKVYIADVPFPNAFAYGSPIAGKRIAITLPLLKIL-NRDEIKAVAGHELGHLKHRDVELLMAIGLIPTLIYYLGYSLFWG  179 (324)
T ss_pred             CeEEEecCCCCCeEEeccCCCCCEEEEehHHHhhC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999964    56899999999999 999999999999999999999776543222221111100     


Q ss_pred             Hhhh------hH------HH-------HHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 016105          335 QFVM------PD------VV-------NTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQ  391 (395)
Q Consensus       335 ~~~~------~d------~~-------~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~  391 (395)
                      .+.+      ++      +.       ..+ ...+.+.+||..|++||+.|..++   +-+|+++.+.++|+....
T Consensus       180 ~~~~~~~~~~~~~~~~l~l~~ll~~~~~~i-~~~l~~aiSR~rEy~AD~~aa~~~---tg~p~~LasAL~KL~~~~  251 (324)
T PRK01265        180 GMFGGGGGGRGNNGGLLFLIGIALMAVSFV-FNLLVLSINRMREAYADVNSALTV---PGGAENLQTALAKITLSM  251 (324)
T ss_pred             HHhcccccCCCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHhh---cCChHHHHHHHHHHHhcc
Confidence            0000      00      01       111 123567899999999999998754   358999999999998643

>KOG2719 consensus Metalloprotease [General function prediction only]

Probab=98.91  E-value=1.8e-08  Score=103.47  Aligned_cols=111  Identities=23%  Similarity=0.382  Sum_probs=74.5

Q ss_pred             EEEEEeC----CCcceeeeCC---CeEEEccchHh--hcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 016105          265 EVLVVNE----PVINAFCLPG---GKIVVFTGLLE--HFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQ  335 (395)
Q Consensus       265 ~v~Vi~s----~~vNAFalPG---G~I~V~tGLL~--~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~  335 (395)
                      .++|++.    ...|||-.+=   -+|++|+.|+.  ...|+||++||+|||+||...+|..++..-..+..++...+..
T Consensus       236 k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~~~~~~~eel~AVl~HELGHW~~~H~~K~~ii~~~~l~l~~llF~  315 (428)
T KOG2719|consen  236 KYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLEEEHLNNEELVAVLAHELGHWKLNHVLKNIIIMQIHLFLEFLLFG  315 (428)
T ss_pred             EEEEEecCCCCCCCCeeeeeccccceEEEehhhhhhhhccccHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4667772    3599999874   49999999993  3338999999999999999999999987654333333222211


Q ss_pred             hh---------------hhHHHHHH------------HHHHHhChhchHHHHHHHHHHHHHHHhcCCChHH
Q 016105          336 FV---------------MPDVVNTM------------STLFLRLPFSRKMEMEADYIGLLLIASSGYDPRV  379 (395)
Q Consensus       336 ~~---------------~~d~~~~l------------~~~~~~l~~SR~~E~EAD~iGl~lmakAGydP~a  379 (395)
                      +.               .|...+.+            .......-.||..|++||+++.+    -||.-+=
T Consensus       316 ~~~~~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~~~~n~~sR~fEyqAD~fA~k----lGYg~~L  382 (428)
T KOG2719|consen  316 FLYRNPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLNFLMNLISRRFEYQADAFAKK----LGYGKDL  382 (428)
T ss_pred             HHHcCcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCchhH
Confidence            10               11122211            01234566799999999998876    5776543

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.55  E-value=0.00085  Score=65.98  Aligned_cols=93  Identities=25%  Similarity=0.261  Sum_probs=64.1

Q ss_pred             EEEEEeCCC-cceeeeCC--CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Q 016105          265 EVLVVNEPV-INAFCLPG--GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDV  341 (395)
Q Consensus       265 ~v~Vi~s~~-vNAFalPG--G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~~~~~d~  341 (395)
                      .+.++.++. ...|+++-  -+|++-.++++.+ +++|+..||.||++|+.++|..-.+-...    +. ++.. ..|  
T Consensus       159 ~~~i~~s~~i~sP~~~G~~~p~I~lP~~~~~~~-~~~el~~il~HEl~Hikr~D~~~~~l~~l----~~-~l~W-fnP--  229 (299)
T PF05569_consen  159 PIRIRVSSGISSPFVFGFLRPVIVLPESLLEDL-SEEELRAILLHELAHIKRRDLLWKLLAEL----LC-ALHW-FNP--  229 (299)
T ss_pred             ceEEEEcCCCCCCeeecCcceEEEecCcccccc-CHHHHHHHHHHHHHHHHCCChHHHHHHHH----HH-HHHH-hhH--
Confidence            344554443 46677642  5999999999888 99999999999999999999977543221    11 1111 112  


Q ss_pred             HHHHHHHHHhChhchHHHHHHHHHHHHHH
Q 016105          342 VNTMSTLFLRLPFSRKMEMEADYIGLLLI  370 (395)
Q Consensus       342 ~~~l~~~~~~l~~SR~~E~EAD~iGl~lm  370 (395)
                         +. ......+.+..|..||...+.-+
T Consensus       230 ---~~-~~~~~~~~~~~E~~cD~~vl~~l  254 (299)
T PF05569_consen  230 ---LV-WLLRRRIRRDRELACDEAVLRNL  254 (299)
T ss_pred             ---HH-HHHHHHHHHHHHHhhhHHHHHhc
Confidence               11 23445678889999999988864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function

Probab=97.35  E-value=0.0038  Score=51.44  Aligned_cols=51  Identities=20%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             eEEEEEeCC--CcceeeeC---CCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHH
Q 016105          264 WEVLVVNEP--VINAFCLP---GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEG  319 (395)
Q Consensus       264 w~v~Vi~s~--~vNAFalP---GG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~  319 (395)
                      .+|...+..  ....++.+   .+.|+|++.+     ++.+-..+|+||+||+..+|....
T Consensus         6 i~v~~~~~~~~~~~~~~~~~~~~~~I~in~~~-----~~~~~~f~laHELgH~~~~~~~~~   61 (122)
T PF06114_consen    6 IDVVYTDLGPKDLGGFSIPKENNPIIFINSNL-----SPERQRFTLAHELGHILLHHGDET   61 (122)
T ss_dssp             -EEEEE--TT--EEEETT----TTEEEEESSS------HHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             EEEEEEcCCCCCcCEEEEecCcCCEEEECCCC-----CHHHHHHHHHHHHHHHHhhhcccc
Confidence            344444433  34445444   5688888872     788899999999999999998764

A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.

>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases

Probab=97.25  E-value=0.0015  Score=65.04  Aligned_cols=84  Identities=18%  Similarity=0.233  Sum_probs=52.3

Q ss_pred             cceeeeC-CCeEEEccchHhhcC------CHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 016105          274 INAFCLP-GGKIVVFTGLLEHFR------TDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMS  346 (395)
Q Consensus       274 vNAFalP-GG~I~V~tGLL~~~~------nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~~~~~d~~~~l~  346 (395)
                      .|||=.| +.+|++...+++.+.      .+--.+.|||||.||.+++..-          ++..+-.      .-... 
T Consensus       137 ~gpFYCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlAHEyGHHVQ~l~G----------il~~~~~------~~~~~-  199 (292)
T PF04228_consen  137 TGPFYCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLAHEYGHHVQNLLG----------ILDAVRQ------AQQGR-  199 (292)
T ss_pred             CCCEeCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHhh----------hHHHHHH------Hhhcc-
Confidence            5665445 679999998876553      2445678999999999876541          1110000      00000 


Q ss_pred             HHHHhChhchHHHHHHHHHHHHHHHhcC
Q 016105          347 TLFLRLPFSRKMEMEADYIGLLLIASSG  374 (395)
Q Consensus       347 ~~~~~l~~SR~~E~EAD~iGl~lmakAG  374 (395)
                      ..--.+..||..|.+||.++=.++..+-
T Consensus       200 ~~~~~~~~svr~ELQADC~AGvw~~~~~  227 (292)
T PF04228_consen  200 SPAEANELSVRLELQADCFAGVWAGHAA  227 (292)
T ss_pred             CccccchHHHHHHHHHHHHHHHHhhhcc
Confidence            0011345699999999999988887543

The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.

>PF13203 DUF2201_N: Putative metallopeptidase domain

Probab=96.65  E-value=0.003  Score=62.02  Aligned_cols=56  Identities=21%  Similarity=0.237  Sum_probs=48.9

Q ss_pred             EEEEEeCCCcceeeeCCCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHH
Q 016105          265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGIT  321 (395)
Q Consensus       265 ~v~Vi~s~~vNAFalPGG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s  321 (395)
                      .+.++.++.+..+++.|..|+++-..+..+ +.+|+.+||.||+-|++.+|..+.-.
T Consensus        26 ~l~~~~~~~~~t~~tDg~~l~~nP~~~~~l-~~~~~~~~l~HevlH~~~~H~~r~~~   81 (292)
T PF13203_consen   26 SLPPVEDDGIPTAATDGRRLYYNPEFLESL-SPEERVGLLLHEVLHCLLRHPWRRGG   81 (292)
T ss_pred             hCeeeeCCCCceeeEcCcEEEECcHHHhcC-CHHHHHHHHHHHHHHHHccchhhhcc
Confidence            344455778889999999999999999888 89999999999999999999987655

>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]

Probab=95.74  E-value=0.067  Score=53.95  Aligned_cols=96  Identities=25%  Similarity=0.286  Sum_probs=63.8

Q ss_pred             cceeeeCCCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhCh
Q 016105          274 INAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLP  353 (395)
Q Consensus       274 vNAFalPGG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~~~~~d~~~~l~~~~~~l~  353 (395)
                      +=-|.++--.|++-+.+.+.+ +++|+.-|++||.+|+..++.......    .+++ ++.++ .|-     . .+....
T Consensus       165 P~v~gl~kp~IvlP~d~~~r~-~~ee~~yIilHEl~Hlk~gD~i~n~i~----~~~~-~l~Wf-NP~-----v-~l~~~~  231 (337)
T COG4219         165 PMVFGLVKPCIVLPADFVERL-TDEELKYIILHELSHLKRGDAIINLIV----VVLG-VLFWF-NPL-----V-HLGKRK  231 (337)
T ss_pred             ceeeccCcceEEccHHHHhhc-CHHhhhhhHhHHHhhhhcccHHHHHHH----HHHh-HHhhc-ChH-----H-HHHHHH
Confidence            444556667899999999999 999999999999999999998664221    1111 11111 111     1 122334


Q ss_pred             hchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 016105          354 FSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSW  387 (395)
Q Consensus       354 ~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL  387 (395)
                      +--++|.++|+..+...     +|++-...=|.|
T Consensus       232 ~~~D~E~aCDa~vL~~~-----~~~err~YaEsi  260 (337)
T COG4219         232 IRIDQEIACDAAVLARI-----NPEERRTYAESI  260 (337)
T ss_pred             HHhhHHHHhhHHHHhcc-----ChHHHHHHHHHH
Confidence            56689999999988754     666655554444

>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.32  E-value=0.015  Score=55.33  Aligned_cols=46  Identities=35%  Similarity=0.304  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhChhchHHHHHHHHHHHHHHHhcCCC
Q 016105          300 IATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEMEADYIGLLLIASSGYD  376 (395)
Q Consensus       300 LAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~~~~~d~~~~l~~~~~~l~~SR~~E~EAD~iGl~lmakAGyd  376 (395)
                      ++.+|.||++|+..+|....                               ....+...|.+||..+..++-....+
T Consensus       101 ~~fil~HE~~Hv~~~h~~~~-------------------------------~~~~~~~eE~~AD~~A~~~il~~~~~  146 (206)
T PF10463_consen  101 IAFILLHELAHVVLGHEGDS-------------------------------SPSQSIQEEKEADSYATEMILSDVGN  146 (206)
T ss_pred             HHHHHHHHHHHHHHcCcccc-------------------------------ccchhHHHHHhhhHHHHHHHHHHHHh
Confidence            88999999999999998542                               23457778999999999988665555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.

>PRK09672 phage exclusion protein Lit; Provisional

Probab=94.66  E-value=0.017  Score=57.52  Aligned_cols=59  Identities=25%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhChhchHHHHH
Q 016105          282 GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLFLRLPFSRKMEME  361 (395)
Q Consensus       282 G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~~~~~d~~~~l~~~~~~l~~SR~~E~E  361 (395)
                      +.+-+...|+-.+     +|.|+-||++|++..|...                               ....+|+..|.|
T Consensus       152 ~~~~~andLfl~A-----~a~i~~HEiaHv~~~h~~~-------------------------------~~~e~s~~eE~e  195 (305)
T PRK09672        152 EDQEVANDLFLCA-----LAWILLHEIAHVEFQHSSL-------------------------------ESNEDSIQEEKE  195 (305)
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHhccccc-------------------------------cCchHHHHHHHH
Confidence            3565566666655     8999999999999999842                               124457889999


Q ss_pred             HHHHHHHHHHhcCCC
Q 016105          362 ADYIGLLLIASSGYD  376 (395)
Q Consensus       362 AD~iGl~lmakAGyd  376 (395)
                      ||.++..++-...++
T Consensus       196 aDs~At~~il~~~~~  210 (305)
T PRK09672        196 ADSYATNWLLSKSEK  210 (305)
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999999988877

>PF13699 DUF4157: Domain of unknown function (DUF4157)

Probab=92.63  E-value=0.085  Score=42.70  Aligned_cols=39  Identities=28%  Similarity=0.391  Sum_probs=28.8

Q ss_pred             CcceeeeCCCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhh
Q 016105          273 VINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR  314 (395)
Q Consensus       273 ~vNAFalPGG~I~V~tGLL~~~~nddELAaVLaHEigHv~~r  314 (395)
                      ...||++ |+.|++..|=.+.-  ..+=..+|+||++|+++.
T Consensus        37 ~A~A~T~-G~~I~f~~g~~~~~--s~~~~~llaHEl~Hv~Qq   75 (79)
T PF13699_consen   37 GARAFTV-GNDIYFAPGKYNPD--SPEGRALLAHELAHVVQQ   75 (79)
T ss_pred             CCeEEEE-CCEEEEcCCCcCCC--CCCcchhHhHHHHHHHhh
Confidence            4778887 88999987765542  222357899999999864

>smart00731 SprT SprT homologues

Probab=91.42  E-value=0.23  Score=44.20  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=29.6

Q ss_pred             CCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhh
Q 016105          281 GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVAR  314 (395)
Q Consensus       281 GG~I~V~tGLL~~~~nddELAaVLaHEigHv~~r  314 (395)
                      .+.|.++.-|++.. .++.|..||.|||+|+..-
T Consensus        41 ~~~I~ln~~l~~~~-~~~~l~~~l~HEm~H~~~~   73 (146)
T smart00731       41 SAEIRLNPKLLTEN-GRDRLRETLLHELCHAALY   73 (146)
T ss_pred             CCEEEeCHHHHhhc-cHHHHHhhHHHHHHHHHHH
Confidence            68999999998865 7899999999999999984

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57

Probab=90.70  E-value=0.2  Score=47.92  Aligned_cols=36  Identities=31%  Similarity=0.482  Sum_probs=26.7

Q ss_pred             eCCCeEEEccchHhhcCCHHHHHHHHHHHHHHHh-hhhhH
Q 016105          279 LPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAV-ARHAA  317 (395)
Q Consensus       279 lPGG~I~V~tGLL~~~~nddELAaVLaHEigHv~-~rH~~  317 (395)
                      .|++.|.| .|+-. . +-+.++.||.|||||.+ .||.-
T Consensus       115 ~P~~~I~I-~~~~~-~-~~~~~~hvi~HEiGH~IGfRHTD  151 (211)
T PF12388_consen  115 NPYKFIQI-YGLSN-Y-SVNVIEHVITHEIGHCIGFRHTD  151 (211)
T ss_pred             CCCceEEE-EecCC-C-chhHHHHHHHHHhhhhccccccC
Confidence            35678888 46532 2 67789999999999987 57754

The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].

>PRK04351 hypothetical protein; Provisional

Probab=90.39  E-value=0.37  Score=43.61  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=30.2

Q ss_pred             eeeeCCCeEEEccchHhhcCCHHHHHHHHHHHHHHHh
Q 016105          276 AFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAV  312 (395)
Q Consensus       276 AFalPGG~I~V~tGLL~~~~nddELAaVLaHEigHv~  312 (395)
                      ++-+....|-++.-+++.. .+++|..||.|||+|+.
T Consensus        38 ~~~l~~~~I~lnp~ll~~~-~~~~l~~vv~HElcH~~   73 (149)
T PRK04351         38 RYLLKDHHIEFNPKMLEEY-GLEELIGIIKHELCHYH   73 (149)
T ss_pred             eeecCCCeEEeCHHHHhhc-cHHHHHhhHHHHHHHHH
Confidence            3445567999999998876 89999999999999974

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=90.01  E-value=0.43  Score=42.28  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             eEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhh
Q 016105          283 KIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA  316 (395)
Q Consensus       283 ~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~  316 (395)
                      .|.++.-+++. .++++|..||.|||+|+..-+.
T Consensus        44 ~I~ls~~~~~~-~~~~~~~~tL~HEm~H~~~~~~   76 (157)
T PF10263_consen   44 EIRLSPKLLDR-NPEEELIDTLLHEMAHAAAYVF   76 (157)
T ss_pred             EEEECHHHHHh-hHHHHHHHHHHHHHHHHHhhhc
Confidence            79999999998 4899999999999999998555

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=89.12  E-value=0.46  Score=45.70  Aligned_cols=47  Identities=19%  Similarity=0.205  Sum_probs=36.0

Q ss_pred             CCCcceeeeCCCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHH
Q 016105          271 EPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEG  319 (395)
Q Consensus       271 s~~vNAFalPGG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~  319 (395)
                      -...=+-|...|.|.++.-|...  .++.|-.|+.||++|+...++..+
T Consensus       148 ~k~~WGScs~~~~i~~~~~l~~~--p~~~i~YVvvHELaHLke~nHs~~  194 (223)
T COG1451         148 MKRRWGSCSKAGEIRFNWRLVMA--PEEVIDYVVVHELAHLKEKNHSKR  194 (223)
T ss_pred             ccceeeeecCCCcEEeehhhhcC--CHHHHHHHHHHHHHHHhhhhccHH
Confidence            33455567788877777666553  999999999999999998887654

>COG2321 Predicted metalloprotease [General function prediction only]

Probab=88.63  E-value=0.35  Score=47.88  Aligned_cols=38  Identities=29%  Similarity=0.477  Sum_probs=30.5

Q ss_pred             eeeC-CCeEEEccchHhhcC------CHHHHHHHHHHHHHHHhhh
Q 016105          277 FCLP-GGKIVVFTGLLEHFR------TDAEIATIIGHEVAHAVAR  314 (395)
Q Consensus       277 FalP-GG~I~V~tGLL~~~~------nddELAaVLaHEigHv~~r  314 (395)
                      |-.| +.|+++...+++.|+      .|=.-+.|+|||+||++++
T Consensus       137 FYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGHHVQn  181 (295)
T COG2321         137 FYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGHHVQN  181 (295)
T ss_pred             eecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhHHHHH
Confidence            4446 589999999999885      4455689999999999865

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=88.53  E-value=0.94  Score=42.29  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=27.2

Q ss_pred             CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhH
Q 016105          282 GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAA  317 (395)
Q Consensus       282 G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~  317 (395)
                      |+|+++-  +..-.+.++|.++||||.-|+.+-...
T Consensus        49 ~~i~l~~--~~~~~~~~~l~~~iaHE~hH~~r~~~~   82 (195)
T PF10026_consen   49 GYIFLFL--LPNDYSLEELPALIAHEYHHNCRYEQI   82 (195)
T ss_pred             CEEEEEe--cCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence            6888876  555558999999999999999876544

>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases

Probab=88.24  E-value=4  Score=39.43  Aligned_cols=30  Identities=27%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             HHhChhchHHHHHHHHHHHHHHHhcCC-ChHHHHH
Q 016105          349 FLRLPFSRKMEMEADYIGLLLIASSGY-DPRVAPK  382 (395)
Q Consensus       349 ~~~l~~SR~~E~EAD~iGl~lmakAGy-dP~aav~  382 (395)
                      ++.||-    |+.|-+=++.++.+.|| +|++...
T Consensus       159 lvTLPV----EfdAS~RAl~~L~~~~~l~~~E~~~  189 (222)
T PF04298_consen  159 LVTLPV----EFDASRRALPILEEGGILSPEELPG  189 (222)
T ss_pred             eeechh----hhhhhHHHHHHHHHCCCCCHHHHHH
Confidence            356775    99999999999999996 4444333

The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.

>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]

Probab=87.26  E-value=0.13  Score=55.34  Aligned_cols=45  Identities=31%  Similarity=0.617  Sum_probs=31.7

Q ss_pred             CcceeeeCCCeEEEcc-chHh--hcC-------CHHHHHHHHHHHHHHHhhhhhH
Q 016105          273 VINAFCLPGGKIVVFT-GLLE--HFR-------TDAEIATIIGHEVAHAVARHAA  317 (395)
Q Consensus       273 ~vNAFalPGG~I~V~t-GLL~--~~~-------nddELAaVLaHEigHv~~rH~~  317 (395)
                      ++|||-=|+-...|+- ++|.  ...       |--.|-+||||||+|.--..++
T Consensus       450 ~VNAYYnp~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDdqGa  504 (654)
T COG3590         450 TVNAYYNPQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGA  504 (654)
T ss_pred             HhhhhcCCCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccCCcc
Confidence            5999999986555554 5554  121       4446889999999998766554

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori

Probab=86.26  E-value=0.74  Score=42.38  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=38.5

Q ss_pred             EEEEEeCCCcceeeeCCCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHH
Q 016105          265 EVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE  318 (395)
Q Consensus       265 ~v~Vi~s~~vNAFalPGG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e  318 (395)
                      ++.|-+...-=.-|...|.|-++.-|+..  .++-+..|+.||++|+...++..
T Consensus       131 ~i~ir~~ksrWGsc~~~~~I~ln~~L~~~--P~~~idYVvvHEL~Hl~~~nHs~  182 (205)
T PF01863_consen  131 KIKIRDMKSRWGSCSSKGNITLNWRLVMA--PPEVIDYVVVHELCHLRHPNHSK  182 (205)
T ss_pred             eEEEeehhhccccCCCCCcEEeecccccC--CccHHHHHHHHHHHHhccCCCCH
Confidence            34444444444457557999999988874  88889999999999997665544

The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=84.32  E-value=2.2  Score=40.60  Aligned_cols=48  Identities=17%  Similarity=0.264  Sum_probs=36.6

Q ss_pred             EEeCCCcceeeeCC----CeEEEccchHhhcCC----HHHHHHHHHHHHHHHhhhhh
Q 016105          268 VVNEPVINAFCLPG----GKIVVFTGLLEHFRT----DAEIATIIGHEVAHAVARHA  316 (395)
Q Consensus       268 Vi~s~~vNAFalPG----G~I~V~tGLL~~~~n----ddELAaVLaHEigHv~~rH~  316 (395)
                      ++++-.-=|++. |    ..|.++...|....+    .+|+..||-|||.|+.+...
T Consensus        57 ~~~~~~gVA~t~-gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~  112 (205)
T PF04450_consen   57 ILDDMDGVAYTS-GDDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDG  112 (205)
T ss_pred             EEECCCeeEEEe-cCCCccEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence            455444445553 4    699999999998753    36999999999999998665

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=83.95  E-value=1.8  Score=35.63  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=20.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhhhhHH
Q 016105          295 RTDAEIATIIGHEVAHAVARHAAE  318 (395)
Q Consensus       295 ~nddELAaVLaHEigHv~~rH~~e  318 (395)
                      .+++.+..||+||++|+.......
T Consensus        20 ~~~~~~~~~l~HE~~H~~~~~~~~   43 (128)
T PF13485_consen   20 SDEDWLDRVLAHELAHQWFGNYFG   43 (128)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC
Confidence            478888999999999999777653

>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily

Probab=82.38  E-value=1.7  Score=38.37  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             CeEEEccchHhhc---CCHHHHHHHHHHHHHHHhhhhh
Q 016105          282 GKIVVFTGLLEHF---RTDAEIATIIGHEVAHAVARHA  316 (395)
Q Consensus       282 G~I~V~tGLL~~~---~nddELAaVLaHEigHv~~rH~  316 (395)
                      |.|.+...-+...   .+.+.+-+|+.|||||.+-=.+
T Consensus        73 g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL~H  110 (165)
T cd04268          73 GEILLARVYLYSSFVEYSGARLRNTAEHELGHALGLRH  110 (165)
T ss_pred             ccEEeeEEEEchhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5666655443211   1345789999999999985433

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.

>PRK04860 hypothetical protein; Provisional

Probab=80.07  E-value=1.8  Score=39.65  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=28.1

Q ss_pred             CCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhh
Q 016105          281 GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHA  316 (395)
Q Consensus       281 GG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~  316 (395)
                      .+.|-++--++..- .+++|..||.|||+|+.....
T Consensus        45 ~~~I~~Np~ll~~~-~~~~l~~~v~HEl~H~~~~~~   79 (160)
T PRK04860         45 SNEIRLNPVLLLEN-QQAFIDEVVPHELAHLLVYQL   79 (160)
T ss_pred             cCCeeeCHHHHhhC-cHHHHHhHHHHHHHHHHHHHH
Confidence            45677777777765 889999999999999987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	395
3c37_A	253	X-ray Structure Of The Putative Zn-dependent Peptid		8e-07

>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase Q74d82 At The Resolution 1.7 A. Northeast Structural Genomics Consortium Target Gsr143a Length = 253

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 268 VVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGXXXXXXXXXXXXXGITKNLWFA 327
           VV +  +NAF +PGG++ V TGLL+    + E+A ++                T+   ++
Sbjct: 68  VVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQXTQEYGYS 127
Query: 328 ILQLILYQFVMPDVVNTMSTLFLRL-------PFSRKMEMEADYIGLLLIASSGYDP 377
               ++   V+ D  N ++ L  +L        +SR+ E +AD++G+     +GY+P
Sbjct: 128 ----LVLSLVLGDNPNXLAQLAGQLFGKAGXXSYSREYENQADFLGVETXYKAGYNP 180

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	395
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	3e-44
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253

 Score =  152 bits (387), Expect = 3e-44
 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 6/142 (4%)

Query: 254 SATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVA 313
            + +     ++   VV +  +NAF +PGG++ V TGLL+    + E+A ++ HE+ HAVA
Sbjct: 54  LSGARAVEFDYVFKVVKDDSVNAFAIPGGRVYVHTGLLKAADNETELAGVLAHEINHAVA 113

Query: 314 RHAAEGITKNLWFAILQLILYQFVMPDVVNTMSTLF---LRLPFSRKMEMEADYIGLLLI 370
           RH    +T+   ++++  ++       +      LF     + +SR+ E +AD++G+  +
Sbjct: 114 RHGTRQMTQEYGYSLVLSLVLGDNPNMLAQLAGQLFGKAGMMSYSREYENQADFLGVETM 173

Query: 371 ASSGYDPRVAPKFTRSWVKLQA 392
             +GY+P     F   + KL A
Sbjct: 174 YKAGYNPNGLTSF---FQKLNA 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 9e-12
 Identities = 51/392 (13%), Positives = 100/392 (25%), Gaps = 124/392 (31%)

Query: 8   KAALDAFRNLSSKAVPKSPVQES--CSRVY-------SNGSANSAKFSSGF--YSYSCIS 56
           K   D  +++ SK      +      S          S       KF       +Y  + 
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 57  QRLRNSYCNPNFNTAKRYYYVDRYH------VQHFRPRGP-----RKWLQNPRTVFIVVV 105
             ++     P+  T       DR +       ++   R       R+ L   R    V++
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 106 IGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDS 165
            G                                         +  +  GK        +
Sbjct: 156 DG-----------------------------------------VLGS--GK--------T 164

Query: 166 VRVRLIAKDIIEALQRGLKHETVWSDMGYASTETDFVNEGRAARDTLRALSENSERGKTE 225
                +       +Q  +  +  W ++   ++    +       + L+ L    +   T 
Sbjct: 165 WVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTS 215

Query: 226 GKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVL--VVNEPVINAF---CLP 280
              H  +  L    +Q   ++     L  +  + + L   VL  V N    NAF   C  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRR-----LLKSKPYENCL--LVLLNVQNAKAWNAFNLSC-- 266

Query: 281 GGKIVVFTGLLEHFRTDAEIATII-GHEVAHAVARHAAEGITKNLWFAILQLILYQFVMP 339
             KI++ T      R   ++   +      H    H +  +T +   ++L   L      
Sbjct: 267 --KILLTT------R-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------ 311

Query: 340 DVVNTMSTLFLRLPFSRKMEMEADYIGLLLIA 371
                       LP       E        ++
Sbjct: 312 ------DCRPQDLP------REVLTTNPRRLS 331

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	395
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	100.0
4aw6_A	482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	99.6
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	99.57
3dte_A	301	IRRE protein; radiotolerance, gene regulation, met	95.81

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=100.00  E-value=5.5e-37  Score=293.22  Aligned_cols=184  Identities=24%  Similarity=0.424  Sum_probs=141.3

Q ss_pred             CCCccchhccCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChh-hHHHHHHHHHHHHHHHhcccccccccccCCCCcccc
Q 016105          122 VPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPD-SVRVRLIAKDIIEALQRGLKHETVWSDMGYASTETD  200 (395)
Q Consensus       122 vP~TgR~r~~lvs~~~e~~lg~~~~~qi~~~~~~~ilP~~~p~-~~rV~~I~~rIi~a~~~~l~~~~~~~~~g~~~~~~~  200 (395)
                      +|.|||+|++++|+++|.++|++.++++.++++  .  ..+|. ..+|++|++++...+                     
T Consensus         3 ~~~tgr~~~~~~s~~~e~~lg~~~~~~~~~~~~--~--~~d~~l~~~l~~l~~~l~~~~---------------------   57 (253)
T 3c37_A            3 TSMTDIKGFNMISIEQEKELGNKFAVEIEKQQQ--P--VNDPEVQRYVDKVGKRLLSGA---------------------   57 (253)
T ss_dssp             ------CCCCCCCHHHHHHHHHHHHHHHHTTCC--B--CCCHHHHHHHHHHHHHHHHTS---------------------
T ss_pred             cCCCCchhhccCCHHHHHHHHHHHHHHHHHhCC--C--CCCHHHHHHHHHHHHHHHHhC---------------------
Confidence            467999999999999999999999999988764  3  34565 668888888876421                     


Q ss_pred             ccccchhhhhHHhhhhcccccccccCCccccccccchHHHHHHhhhcccccccccccCCCCCCeEEEEEeCCCcceeeeC
Q 016105          201 FVNEGRAARDTLRALSENSERGKTEGKWHQEDEILDDKWVQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPVINAFCLP  280 (395)
Q Consensus       201 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~d~~v~~~~~~g~~~~~~~~~~~l~~~~w~v~Vi~s~~vNAFalP  280 (395)
                                                                               ..++.+|+|+|++++.+||||+|
T Consensus        58 ---------------------------------------------------------~~~~~~~~v~v~~~~~~NAfa~~   80 (253)
T 3c37_A           58 ---------------------------------------------------------RAVEFDYVFKVVKDDSVNAFAIP   80 (253)
T ss_dssp             ---------------------------------------------------------SCCCSCCEEEEECCCSCCEEEET
T ss_pred             ---------------------------------------------------------CCCCCCeEEEEEeCCCCCeeEcC
Confidence                                                                     11346899999999999999999


Q ss_pred             CCeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh---H--HH-HHHHHHHHhChh
Q 016105          281 GGKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQFVMP---D--VV-NTMSTLFLRLPF  354 (395)
Q Consensus       281 GG~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~~~~~---d--~~-~~l~~~~~~l~~  354 (395)
                      ||+|+|++|||+.++|+|||++||||||||+.++|..+++.....+.+   ++..+.+.   .  +. +.+...++.++|
T Consensus        81 gg~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~~H~~~~~~~~~~~~~---l~~~~~g~~~~~~~~~~~~~~~~~~~~~~  157 (253)
T 3c37_A           81 GGRVYVHTGLLKAADNETELAGVLAHEINHAVARHGTRQMTQEYGYSL---VLSLVLGDNPNMLAQLAGQLFGKAGMMSY  157 (253)
T ss_dssp             TTEEEEEHHHHHHCSSHHHHHHHHHHHHHHHHTTHHHHHHHHHHCHHH---HHHHHHTCCH--HHHHHHHHHSSSCCCCC
T ss_pred             CCeEEeeHHHHhhCCCHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---HHHHHhCCCchhHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999998876541111   11111111   1  00 111111246889


Q ss_pred             chHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhh
Q 016105          355 SRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKL  390 (395)
Q Consensus       355 SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~  390 (395)
                      ||.+|+|||.+|+++|++|||||++++++|+||.+.
T Consensus       158 SR~~E~eAD~~a~~~~~~ag~~p~~l~~~l~kl~~~  193 (253)
T 3c37_A          158 SREYENQADFLGVETMYKAGYNPNGLTSFFQKLNAM  193 (253)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHTC-
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999765

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A

Probab=99.60  E-value=6.1e-15  Score=152.84  Aligned_cols=122  Identities=25%  Similarity=0.299  Sum_probs=89.5

Q ss_pred             eEEEEEe----CCCcceeeeCC---CeEEEccchHhh-------------------------------------cCCHHH
Q 016105          264 WEVLVVN----EPVINAFCLPG---GKIVVFTGLLEH-------------------------------------FRTDAE  299 (395)
Q Consensus       264 w~v~Vi~----s~~vNAFalPG---G~I~V~tGLL~~-------------------------------------~~nddE  299 (395)
                      -+++|++    ++..|||+.+-   .+|+++++||+.                                     | |+||
T Consensus       250 ~~v~vv~gSkRs~~~NAy~~G~~~~krIVl~dtLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~E  328 (482)
T 4aw6_A          250 TKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGC-KNEE  328 (482)
T ss_dssp             EEEEEECGGGTBSCCCEEEEESSSCEEEEEEHHHHC------------------------------------CCC-CHHH
T ss_pred             CcEEEEeCCCCCCCCceEEEcCCCCcEEEEEchHHHhcccccccccccccccccccccccchhhcccchhhccCC-CHHH
Confidence            5899999    77899999874   379999999987                                     5 8999


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh----------hh-----hHHHHH------------HHHHHHhC
Q 016105          300 IATIIGHEVAHAVARHAAEGITKNLWFAILQLILYQF----------VM-----PDVVNT------------MSTLFLRL  352 (395)
Q Consensus       300 LAaVLaHEigHv~~rH~~e~~s~~~~~~il~~~l~~~----------~~-----~d~~~~------------l~~~~~~l  352 (395)
                      |++|||||+||+.++|...++....+..++...+...          .+     |.+.+.            ....++.+
T Consensus       329 l~aVlaHElgH~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~l~~~~G~~~~~p~~~~~llv~~~i~~P~~~l~~~i~~  408 (482)
T 4aw6_A          329 VLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLT  408 (482)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHTTCCSCCCHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcchhhHhhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998865543322222111110          00     111111            01123678


Q ss_pred             hhchHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhh
Q 016105          353 PFSRKMEMEADYIGLLLIASSGYDPRVAPKFTRSWVKLQ  391 (395)
Q Consensus       353 ~~SR~~E~EAD~iGl~lmakAGydP~aav~~~~rL~~~~  391 (395)
                      .|||.+|+|||+.|.++    |+ |++++++|+||.+.+
T Consensus       409 ~~SR~~E~eAD~~a~~l----g~-p~~L~~AL~KL~~~n  442 (482)
T 4aw6_A          409 VLSRRFEFQADAFAKKL----GK-AKDLYSALIKLNKDN  442 (482)
T ss_dssp             HHHHHHHHHHHHHHHHT----TT-HHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHHc----CC-HHHHHHHHHHHHHhc
Confidence            89999999999999997    65 999999999998754

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.57  E-value=5.6e-15  Score=123.97  Aligned_cols=54  Identities=30%  Similarity=0.409  Sum_probs=50.3

Q ss_pred             eEEEEEeCCCcceeeeCC----CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHH
Q 016105          264 WEVLVVNEPVINAFCLPG----GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE  318 (395)
Q Consensus       264 w~v~Vi~s~~vNAFalPG----G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e  318 (395)
                      ++++|++++.+||||+|+    +.|+|++|||+.+ |+|||++|||||+||+..+|...
T Consensus        44 ~~v~v~~~~~~NAf~~g~~~~~~~i~v~~gLl~~l-~~~El~aVlaHElgH~~~~h~~~  101 (107)
T 3cqb_A           44 PTVAIYDSADINAFATGAKRDDSLVAVSTGLLHNM-TRDEAEAVLAHEVSHIANGDMVT  101 (107)
T ss_dssp             CEEEEECCSSEEEEEECCC--CCEEEEEHHHHHHS-CHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEEECCCcCEEEEecCCCCCEEEEcHHHHhhC-CHHHHHHHHHHHHHHHHCCCHHH
Confidence            699999999999999985    4599999999999 99999999999999999999854

>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A

Probab=95.81  E-value=0.066  Score=52.24  Aligned_cols=49  Identities=12%  Similarity=0.139  Sum_probs=35.0

Q ss_pred             EEEEEeCCCcceeeeCC-CeEEEccchHhhcCCHHHHHHHHHHHHHHHhhhhhHH
Q 016105          265 EVLVVNEPVINAFCLPG-GKIVVFTGLLEHFRTDAEIATIIGHEVAHAVARHAAE  318 (395)
Q Consensus       265 ~v~Vi~s~~vNAFalPG-G~I~V~tGLL~~~~nddELAaVLaHEigHv~~rH~~e  318 (395)
                      .|...+-+....+..++ ..|+|+..+     +.+...++||||+||++.+|...
T Consensus        65 ~V~~~~L~~~~G~~~~~~~~I~LN~~~-----~~~rqrFTLAHELGHllLh~~~~  114 (301)
T 3dte_A           65 TLTFMPMGQRDGAYDPEHHVILINSQV-----RPERQRFTLAHEISHALLLGDDD  114 (301)
T ss_dssp             EEEEECCTTCCEEEETTTTEEEEETTS-----CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             EEEEEcCCCCCEEEECCCcEEEEcCCC-----ChhhHHHHHHHHHHHHHhccccc
Confidence            44444433445666665 467777763     78899999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	395
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	82.56
d1r55a_	203	ADAM33 {Human (Homo sapiens) [TaxId: 9606]}	81.25

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.56  E-value=0.26  Score=39.72  Aligned_cols=17  Identities=29%  Similarity=0.556  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHhh-hhh
Q 016105          300 IATIIGHEVAHAVA-RHA  316 (395)
Q Consensus       300 LAaVLaHEigHv~~-rH~  316 (395)
                      +..|+.|||||++- .|.
T Consensus       117 ~~~v~~HEiGHaLGL~H~  134 (169)
T d1rm8a_         117 LFLVAVHELGHALGLEHS  134 (169)
T ss_dssp             HHHHHHHHHHHHHTCCCC
T ss_pred             hhhhhhhhhhhhhcCCCC
Confidence            77999999999984 454

>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: ADAM33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.25  E-value=0.36  Score=40.97  Aligned_cols=18  Identities=22%  Similarity=0.438  Sum_probs=14.6

Q ss_pred             CHHHHHHHHHHHHHHHhh
Q 016105          296 TDAEIATIIGHEVAHAVA  313 (395)
Q Consensus       296 nddELAaVLaHEigHv~~  313 (395)
                      +.-..|.|+||||||...
T Consensus       128 ~~~~~a~v~AHElGH~lG  145 (203)
T d1r55a_         128 LPIGAAATMAHEIGHSLG  145 (203)
T ss_dssp             SHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHHhcC
Confidence            345678999999999874