Citrus Sinensis ID: 016112

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MSDNLMEKVSAFGERLKIGGAEVGRKMSEGMSQMSFKMKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATLAEQIQRDIRGQSFTKEQTKEAFDVARNSIELLSTVLSSSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEELKKPSGAPAEPEPAMIPVAVEPDDSPHHAKEDALVRKPAGSRGGSHGSSNDDMMDDLDEMIFGKKGGGTSEGGHDSKKQQPPKDDLISF
ccHHHHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHcccccEEccccccccccEEEcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccEEHEEcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccc
MSDNLMEKVSAFGERLKIGGAEVGRKMSEGMSQMSFKMKelfqgpnpveKLVEDATsealeepdwamnldlcdmintekissVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLiddpqtvvNNRNKALVMIEAWGestselrylPVYEETYKSLRSrgirfpgrdneslapiftpprsvseteVDATLAEQIQRdirgqsftkEQTKEAFDVARNSIELLSTVlssspqqdalqdDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEelkkpsgapaepepamipvavepddsphhakedalvrkpagsrggshgssnddmmDDLDEmifgkkgggtsegghdskkqqppkddlisf
MSDNLMEKVSAfgerlkiggaeVGRKMSEGMSQMSFKMKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVkliddpqtvvnNRNKALVMIEAwgestselrylPVYEETYKSLRsrgirfpgrdneslapiftpprsvseTEVDATLAEQIqrdirgqsftkeQTKEAFDVARNSIELLSTVLSSSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEELKKPSGAPAEPEPAMIPVAVEPDDSPHHAKEdalvrkpagsrggshgssnddmMDDLDEMIFGKKgggtsegghdskkqqppkddlisf
MSDNLMEKVSAFGERLKIGGAEVGRKMSEGMSQMSFKMKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATLAEQIQRDIRGQSFTKEQTKEAFDVARNSIELLSTVLSSSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEELKKPSGAPAEPEPAMIPVAVEPDDSPHHAKEDALVRKPAGSRGGSHGSSNDDMMDDLDEMIFgkkgggtseggHDSKKQQPPKDDLISF
***************************************************************DWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGI*****************************************************************************LTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKY*******************************************************************************************
**********A*G*****************************QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDP*T**NNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRG**********************************************************************************LVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKY**************************************************************************************DLISF
MSDNLMEKVSAFGERLKIGGAEVGRKMSEGMSQMSFKMKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATLAEQIQRDIRGQSFTKEQTKEAFDVARNSIELLSTVLSSSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEE**********PEPAMIPVAVEPDDSPHHAKEDALVR*************NDDMMDDLDEMIFGKKG***********************
****LMEKVSAFGERLKIGGAEVGRKMSEGMSQMSFKMKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPP***********************SFTKEQTKEAFDVARNSIELLSTVLSSSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEELKK**************************************************MDDLDEMIFGK*************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSDNLMEKVSAFGERLKIGGAEVGRKMSEGMSQMSFKMKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATLAEQIQRDIRGQSFTKEQTKEAFDVARNSIELLSTVLSSSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKVLTKYEELKKPSGAPAEPEPAMIPVAVEPDDSPHHAKEDALVRKPAGSRGGSHGSSNDDMMDDLDEMIFGKKGGGTSEGGHDSKKQQPPKDDLISF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
Q5SRX1 507 TOM1-like protein 2 OS=Mu yes no 0.686 0.534 0.291 6e-27
Q6ZVM7 507 TOM1-like protein 2 OS=Ho yes no 0.681 0.530 0.302 8e-27
Q68FJ8 507 TOM1-like protein 2 OS=Xe N/A no 0.675 0.526 0.292 4e-25
O60784492 Target of Myb protein 1 O no no 0.731 0.587 0.298 3e-24
O88746492 Target of Myb protein 1 O no no 0.886 0.711 0.274 3e-22
Q54GH3 663 Target of Myb protein 1 O yes no 0.655 0.390 0.262 2e-19
O12940 515 Target of Myb protein 1 O no no 0.873 0.669 0.280 2e-19
Q0U4Z8 720 Vacuolar protein sorting- N/A no 0.339 0.186 0.335 3e-16
Q9JJ50 776 Hepatocyte growth factor- no no 0.354 0.180 0.338 5e-16
Q99LI8 775 Hepatocyte growth factor- no no 0.354 0.180 0.338 5e-16
>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1 Back     alignment and function desciption
 Score =  122 bits (305), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 41/312 (13%)

Query: 34  MSFKMKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRI 93
           M F +   F    PV + +E AT  +L+  DW +N+++CD+IN  +    D IR +KKR+
Sbjct: 1   MEFLLGNPFS--TPVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRL 58

Query: 94  M-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNK 147
              ++ R   LAL +LET VKNC   F  + A R     VL +++   ++P T+V  ++K
Sbjct: 59  SGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIV--QDK 116

Query: 148 ALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDA 207
            L +I+AW ++      L      Y+ L+ RGI FP  D ++L+PI TP RSV E +  A
Sbjct: 117 VLALIQAWADAFRSSPDLTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAA 176

Query: 208 TL----------------------------AEQIQRDIRGQSFTKEQTKEAFDVARNSIE 239
           T+                            A  +   I   S    + +   D+ R + +
Sbjct: 177 TIPRSQTQPRTTAGTYSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTK 236

Query: 240 LLSTVLSS--SPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEI 297
           ++S +L+     Q+D+   +L   L + CR  Q  +  +I     NE +  E L+VND++
Sbjct: 237 VMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQHRIVELISRVS-NEEVTEELLHVNDDL 295

Query: 298 QKVLTKYEELKK 309
             V  +YE  ++
Sbjct: 296 NNVFLRYERFER 307
Probable role in protein transport. May regulate growth factor-induced mitogenic signaling.
Mus musculus (taxid: 10090)
>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1 Back     alignment and function description
>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1 Back     alignment and function description
>sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2 Back     alignment and function description
>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1 Back     alignment and function description
>sp|Q54GH3|TOM1_DICDI Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1 Back     alignment and function description
>sp|O12940|TOM1_CHICK Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2 Back     alignment and function description
>sp|Q0U4Z8|VPS27_PHANO Vacuolar protein sorting-associated protein 27 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=VPS27 PE=3 SV=1 Back     alignment and function description
>sp|Q9JJ50|HGS_RAT Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1 Back     alignment and function description
>sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
225461774395 PREDICTED: TOM1-like protein 2 [Vitis vi 1.0 1.0 0.822 0.0
255558011395 protein transporter, putative [Ricinus c 1.0 1.0 0.855 0.0
225454781395 PREDICTED: TOM1-like protein 2 [Vitis vi 1.0 1.0 0.835 0.0
147784756431 hypothetical protein VITISV_020135 [Viti 1.0 0.916 0.754 0.0
224145935394 predicted protein [Populus trichocarpa] 0.997 1.0 0.853 0.0
224128718394 predicted protein [Populus trichocarpa] 0.997 1.0 0.822 0.0
358248422405 uncharacterized protein LOC100793134 [Gl 1.0 0.975 0.814 0.0
357481089399 Hepatocyte growth factor-regulated tyros 0.994 0.984 0.807 1e-178
149727917399 MYB transcription factor MYB49 [Medicago 0.994 0.984 0.807 1e-177
388494958399 unknown [Medicago truncatula] 0.994 0.984 0.800 1e-176
>gi|225461774|ref|XP_002285602.1| PREDICTED: TOM1-like protein 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/395 (82%), Positives = 362/395 (91%)

Query: 1   MSDNLMEKVSAFGERLKIGGAEVGRKMSEGMSQMSFKMKELFQGPNPVEKLVEDATSEAL 60
           MSDNLM+KV+A GERLKIGG EVG+KMS GMS MSFKM+ELFQGPN  EK+VE+AT+E L
Sbjct: 1   MSDNLMDKVTALGERLKIGGVEVGKKMSAGMSSMSFKMRELFQGPNQTEKIVEEATAETL 60

Query: 61  EEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS 120
           +EPDWA+NLDLCDM+N +KI+SV+LIRGIKKRIMLK+PR+QYLALVLLETVVKNCEKAFS
Sbjct: 61  DEPDWALNLDLCDMVNNDKINSVELIRGIKKRIMLKNPRVQYLALVLLETVVKNCEKAFS 120

Query: 121 EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGI 180
           EVAAERVLDEMVKLIDDPQTVVNNRNK L++IEAWGES +ELRYLPVYEETYKSL+SRGI
Sbjct: 121 EVAAERVLDEMVKLIDDPQTVVNNRNKVLILIEAWGESANELRYLPVYEETYKSLKSRGI 180

Query: 181 RFPGRDNESLAPIFTPPRSVSETEVDATLAEQIQRDIRGQSFTKEQTKEAFDVARNSIEL 240
           RFPGRDNESLAPIFTPPRSVS +E +A LA+++  DI    F+ EQTKE FDVARNSIEL
Sbjct: 181 RFPGRDNESLAPIFTPPRSVSASESNANLAQEVHHDIPVHRFSPEQTKETFDVARNSIEL 240

Query: 241 LSTVLSSSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVNDEIQKV 300
           L+TVLSSSPQQDAL+DDLTTTLVQQC QSQFTVQRIIETAGD+EALLFEALNVNDEIQKV
Sbjct: 241 LTTVLSSSPQQDALKDDLTTTLVQQCHQSQFTVQRIIETAGDDEALLFEALNVNDEIQKV 300

Query: 301 LTKYEELKKPSGAPAEPEPAMIPVAVEPDDSPHHAKEDALVRKPAGSRGGSHGSSNDDMM 360
           L+KYEEL KPS  P EPEPAMIPVAVEP++SP +AKED+L+RKPAGSRGGS G  +D+MM
Sbjct: 301 LSKYEELMKPSEVPHEPEPAMIPVAVEPEESPRYAKEDSLIRKPAGSRGGSQGGHHDEMM 360

Query: 361 DDLDEMIFGKKGGGTSEGGHDSKKQQPPKDDLISF 395
           DDLDEMIFGKK GGTSEG HD+KKQQ PKDDLISF
Sbjct: 361 DDLDEMIFGKKVGGTSEGTHDAKKQQSPKDDLISF 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558011|ref|XP_002520034.1| protein transporter, putative [Ricinus communis] gi|223540798|gb|EEF42358.1| protein transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225454781|ref|XP_002275091.1| PREDICTED: TOM1-like protein 2 [Vitis vinifera] gi|147777947|emb|CAN66798.1| hypothetical protein VITISV_044233 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147784756|emb|CAN70382.1| hypothetical protein VITISV_020135 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224145935|ref|XP_002325818.1| predicted protein [Populus trichocarpa] gi|222862693|gb|EEF00200.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224128718|ref|XP_002328949.1| predicted protein [Populus trichocarpa] gi|222839183|gb|EEE77534.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358248422|ref|NP_001239879.1| uncharacterized protein LOC100793134 [Glycine max] gi|255641549|gb|ACU21048.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357481089|ref|XP_003610830.1| Hepatocyte growth factor-regulated tyrosine kinase substrate [Medicago truncatula] gi|355512165|gb|AES93788.1| Hepatocyte growth factor-regulated tyrosine kinase substrate [Medicago truncatula] Back     alignment and taxonomy information
>gi|149727917|gb|ABR28337.1| MYB transcription factor MYB49 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388494958|gb|AFK35545.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
TAIR|locus:2148121407 AT5G16880 "AT5G16880" [Arabido 1.0 0.970 0.742 2e-152
TAIR|locus:2038545383 AT1G06210 [Arabidopsis thalian 0.870 0.898 0.375 1.7e-57
TAIR|locus:2027037 506 AT1G21380 [Arabidopsis thalian 0.767 0.598 0.329 2.6e-38
TAIR|locus:2025297446 AT1G76970 "AT1G76970" [Arabido 0.713 0.632 0.318 3.5e-36
TAIR|locus:2057140 671 AT2G38410 [Arabidopsis thalian 0.367 0.216 0.403 5.8e-35
TAIR|locus:2180982 542 AT5G01760 [Arabidopsis thalian 0.772 0.562 0.297 2.8e-33
TAIR|locus:2077808 607 AT3G08790 [Arabidopsis thalian 0.645 0.420 0.313 1.1e-31
ZFIN|ZDB-GENE-060721-1476 tom1 "target of myb1 (chicken) 0.764 0.634 0.296 7.7e-28
UNIPROTKB|O60784 492 TOM1 "Target of Myb protein 1" 0.463 0.371 0.345 8.6e-26
UNIPROTKB|B7Z2L7 483 TOM1L2 "cDNA FLJ60511, highly 0.422 0.345 0.353 1.4e-25
TAIR|locus:2148121 AT5G16880 "AT5G16880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
 Identities = 302/407 (74%), Positives = 336/407 (82%)

Query:     1 MSDNLMEKVSAFGERLKIGGAEVGRKMSEGMSQMSFKMKELFQGPNPVEKLVEDATSEAL 60
             M DNLM+KV+AFGERLKIGG+EV  K+S G+S MSFK+KELFQGPNP +K+VEDAT+E L
Sbjct:     1 MGDNLMDKVTAFGERLKIGGSEVSNKISAGVSSMSFKVKELFQGPNPTDKIVEDATTENL 60

Query:    61 EEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS 120
             EEPDW MNL++CDMIN E I+SV+LIRGIKKRIM+K PRIQYLALVLLET VKNCEKAFS
Sbjct:    61 EEPDWDMNLEICDMINQETINSVELIRGIKKRIMMKQPRIQYLALVLLETCVKNCEKAFS 120

Query:   121 EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGI 180
             EVAAERVLDEMVKLIDDPQTVVNNRNKAL++IEAWGESTSELRYLPV+EETYKSL++RGI
Sbjct:   121 EVAAERVLDEMVKLIDDPQTVVNNRNKALMLIEAWGESTSELRYLPVFEETYKSLKARGI 180

Query:   181 RFPGRDNESLAPIFTPPRSVSETEVDATLAEQ------IQRDIRGQSFTKEQTKEAFDVA 234
             RFPGRDNESLAPIFTP RS    E++A L +       IQ D+  +SFT EQTKEAFD+A
Sbjct:   181 RFPGRDNESLAPIFTPARSTPAPELNADLPQHVHEPAHIQYDVPVRSFTAEQTKEAFDIA 240

Query:   235 RNSIELLSTVLSSSPQQDALQDDLTTTLVQQCRQSQFTVQRIIETAGDNEALLFEALNVN 294
             RNSIELLSTVLSSSPQ DALQDDLTTTLVQQCRQSQ TVQRIIETAG+NEALLFEALNVN
Sbjct:   241 RNSIELLSTVLSSSPQHDALQDDLTTTLVQQCRQSQTTVQRIIETAGENEALLFEALNVN 300

Query:   295 DEIQKVLTKYEELKKPSGAPAEPEPAMIPVAVEPDDSPHHAKEDALVRKPAGSRGGSHGS 354
             DE+ K L+KYEE+ KPS      EPAMIPVA EPDDSP H +E++LVRK +G RGG HG 
Sbjct:   301 DELVKTLSKYEEMNKPSAPLTSHEPAMIPVAEEPDDSPIHGREESLVRKSSGVRGGFHGG 360

Query:   355 --SNDDMMDDLDEMIFXXXXXXXXXXX--HDSKKQQPPK--DDLISF 395
               S DDMMDDLDEMIF             HD KK+Q     DDLI F
Sbjct:   361 GGSGDDMMDDLDEMIFGKKNGCDSSTNPDHDPKKEQSSSKNDDLIRF 407
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005795 "Golgi stack" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS
GO:0008565 "protein transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2038545 AT1G06210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027037 AT1G21380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025297 AT1G76970 "AT1G76970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057140 AT2G38410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180982 AT5G01760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077808 AT3G08790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060721-1 tom1 "target of myb1 (chicken)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O60784 TOM1 "Target of Myb protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z2L7 TOM1L2 "cDNA FLJ60511, highly similar to Mus musculus target of myb1-like 2 (chicken) (Tom1l2), transcript variant 1, mRNA" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027891001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (395 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
cd03561133 cd03561, VHS, VHS domain family; The VHS domain is 6e-44
smart00288133 smart00288, VHS, Domain present in VPS-27, Hrs and 2e-30
cd03569142 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs an 7e-30
pfam00790136 pfam00790, VHS, VHS domain 1e-24
cd03565141 cd03565, VHS_Tom1, VHS domain family, Tom1 subfami 3e-21
cd03568144 cd03568, VHS_STAM, VHS domain family, STAM subfami 2e-17
pfam0312799 pfam03127, GAT, GAT domain 2e-17
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 3e-16
cd03567139 cd03567, VHS_GGA, VHS domain family, GGA subfamily 1e-10
>gnl|CDD|239620 cd03561, VHS, VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information 
 Score =  148 bits (377), Expect = 6e-44
 Identities = 60/133 (45%), Positives = 81/133 (60%), Gaps = 3/133 (2%)

Query: 48  VEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVL 107
           V  L+E ATS +LEEPDWA+NL+LCD+IN +     +  R I+K+I   +P +Q LAL L
Sbjct: 1   VTSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTL 60

Query: 108 LETVVKNCEKAF-SEVAAERVLDEMVKLI-DDPQTVVNNRNKALVMIEAWGES-TSELRY 164
           LE +VKNC K F  +VA +  L E+VK+  + P+     R KAL +I AW ES       
Sbjct: 61  LELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGGHSED 120

Query: 165 LPVYEETYKSLRS 177
           LP  E+ YK L+ 
Sbjct: 121 LPGIEDAYKLLKR 133

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general membrane targeting/cargo recognition role in vesicular trafficking. Length = 133
>gnl|CDD|197630 smart00288, VHS, Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>gnl|CDD|239626 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>gnl|CDD|216121 pfam00790, VHS, VHS domain Back     alignment and domain information
>gnl|CDD|239623 cd03565, VHS_Tom1, VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>gnl|CDD|239625 cd03568, VHS_STAM, VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>gnl|CDD|190532 pfam03127, GAT, GAT domain Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|239624 cd03567, VHS_GGA, VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
KOG1087 470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 100.0
KOG1086 594 consensus Cytosolic sorting protein/ADP-ribosylati 100.0
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 100.0
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 100.0
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 100.0
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 100.0
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 100.0
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 100.0
cd03561133 VHS VHS domain family; The VHS domain is present i 100.0
KOG2199462 consensus Signal transducing adaptor protein STAM/ 100.0
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.92
KOG1818 634 consensus Membrane trafficking and cell signaling 99.89
PF03127100 GAT: GAT domain; InterPro: IPR004152 The GAT domai 99.78
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 98.13
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 97.96
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 97.79
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 97.69
cd03562114 CID CID (CTD-Interacting Domain) domain family; CI 97.66
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 97.31
KOG2056336 consensus Equilibrative nucleoside transporter pro 97.24
KOG0251 491 consensus Clathrin assembly protein AP180 and rela 96.78
smart00582121 RPR domain present in proteins, which are involved 95.94
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 94.27
KOG2374 661 consensus Uncharacterized conserved protein [Funct 94.13
KOG2057 499 consensus Predicted equilibrative nucleoside trans 87.03
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 85.55
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 83.09
PF1221096 Hrs_helical: Hepatocyte growth factor-regulated ty 82.36
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 80.86
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-58  Score=469.09  Aligned_cols=281  Identities=37%  Similarity=0.600  Sum_probs=234.2

Q ss_pred             hHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH-HHhhH
Q 016112           47 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS-EVAAE  125 (395)
Q Consensus        47 ~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~-eias~  125 (395)
                      ++..+|+|||++.+.+|||++||+|||+||.+..+++||+|+|+|||++++++||++||+|||+||||||+.|| +|+++
T Consensus         1 ~v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k   80 (470)
T KOG1087|consen    1 SVGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASK   80 (470)
T ss_pred             ChHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHhhcCCCCCCCCCCCCCCccCCCCCCCcch
Q 016112          126 RVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSE-LRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETE  204 (395)
Q Consensus       126 ~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~-~~~l~~i~~~Y~~Lk~~Gi~FP~~~~~s~api~tP~~s~~~~~  204 (395)
                      +||++||+++++++.+..||+|||.||++|+++|.. .++++.|..+|++|+++||+||.++.++++++.+|++.++..+
T Consensus        81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~FP~r~~~sl~~~~pp~~~~~~~~  160 (470)
T KOG1087|consen   81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEFPQRDEESLAVLTPPAVLRPAPE  160 (470)
T ss_pred             HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcCCCCccccccccCCCCCCCCCCC
Confidence            999999999998866789999999999999999998 8899999999999999999999999998877655544443332


Q ss_pred             hhhhhHHhhhhhccCC---CC----CHH---HHHHHHHHHHHHHHHHHHHHhcCCC--CCcchhHHHHHHHHHHHhhHHH
Q 016112          205 VDATLAEQIQRDIRGQ---SF----TKE---QTKEAFDVARNSIELLSTVLSSSPQ--QDALQDDLTTTLVQQCRQSQFT  272 (395)
Q Consensus       205 ~~~~l~q~~q~~~~~~---~~----~~e---q~k~~l~~a~~n~~LL~emL~~~~~--~e~~~dEl~~eL~~~Cr~~q~r  272 (395)
                      ..............++   .+    +++   .+.++|+.++++++||++||.+..+  .+..++|++.+|+.+||.+|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qcr~~q~r  240 (470)
T KOG1087|consen  161 PQEQSGPPNEANASMKSMAGYPTEATPEVSTLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQCRSKQRR  240 (470)
T ss_pred             chhhcCCccccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            2210000000001111   11    122   2457999999999999999998654  3466789999999999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHHhhcCCCCCCCC--CCCCCcccccCC
Q 016112          273 VQRIIETAGDNEALLFEALNVNDEIQKVLTKYEELKKPSGAPAE--PEPAMIPVAVEP  328 (395)
Q Consensus       273 I~rlI~~~~ddEe~L~eLL~~NDeL~~aL~kYe~l~~~~~~~~~--~~~~~~~~~~~~  328 (395)
                      |++||++++ ||++|.++|++||+|+++|.+|+++..|...+..  .+++..|++.++
T Consensus       241 v~~Li~~~~-DE~ll~~lL~lND~L~~vL~~ye~~~~g~s~~~~~~~e~~~~p~~~~~  297 (470)
T KOG1087|consen  241 VMHLIEETS-DEELLCELLKLNDELQRVLERYERIASGSSVATTSKSETASDPVDQSS  297 (470)
T ss_pred             HHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHHHhcccccccccccccCCCccccCc
Confidence            999999996 8999999999999999999999999999222221  345666665555

>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3 Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG2374 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS) Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 2e-16
1elk_A157 Vhs Domain Of Tom1 Protein From H. Sapiens Length = 8e-16
3ldz_A140 Crystal Structure Of Human Stam1 Vhs Domain In Comp 4e-13
1x5b_A163 The Solution Structure Of The Vhs Domain Of Human S 7e-13
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 2e-10
3rru_A152 X-Ray Crystal Structure Of The Vhs Domain Of Human 6e-08
1jpl_A171 Gga3 Vhs Domain Complexed With C-Terminal Peptide F 6e-05
1lf8_A171 Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal Ph 1e-04
1py1_A158 Complex Of Gga1-Vhs Domain And Beta-Secretase C-Ter 2e-04
3g2s_A149 Vhs Domain Of Human Gga1 Complexed With Sorla C-Ter 3e-04
1jwf_A147 Crystal Structure Of Human Gga1 Vhs Domain. Length 4e-04
1mhq_A148 Crystal Structure Of Human Gga2 Vhs Domain Length = 7e-04
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure 
Iteration: 1

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 43  QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQY 102
           +G    E+L++ ATS+ L E DW   L +CD+I      +   +  IKK++  K+P +  
Sbjct: 4   RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVAL 63
Query: 103 LALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSE 161
            AL ++E+VVKNC +    EVA ++ ++E+  L+   Q  VN RNK L +I+AW  +   
Sbjct: 64  YALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK-RQVEVNVRNKILYLIQAWAHAFRN 122
Query: 162 LRYLPVYEETYKSLRSRGIRFP 183
                V ++TY+ ++  G  FP
Sbjct: 123 EPKYKVVQDTYQIMKVEGHVFP 144
>pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapiens Length = 157 Back     alignment and structure
>pdb|3LDZ|A Chain A, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 140 Back     alignment and structure
>pdb|1X5B|A Chain A, The Solution Structure Of The Vhs Domain Of Human Signal Transducing Adaptor Molecule 2 Length = 163 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure
>pdb|3RRU|A Chain A, X-Ray Crystal Structure Of The Vhs Domain Of Human Tom1-Like Protein, Northeast Structural Genomics Consortium Target Hr3050e Length = 152 Back     alignment and structure
>pdb|1JPL|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From Cation-Independent Mannose 6-Phosphate Receptor Length = 171 Back     alignment and structure
>pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal Phosphopeptide Length = 171 Back     alignment and structure
>pdb|1PY1|A Chain A, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal Phosphopeptide Length = 158 Back     alignment and structure
>pdb|3G2S|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal Peptide Length = 149 Back     alignment and structure
>pdb|1JWF|A Chain A, Crystal Structure Of Human Gga1 Vhs Domain. Length = 147 Back     alignment and structure
>pdb|1MHQ|A Chain A, Crystal Structure Of Human Gga2 Vhs Domain Length = 148 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 1e-48
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 4e-44
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 4e-43
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 5e-42
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 2e-41
3g2s_A149 C-terminal fragment of sortilin-related receptor; 3e-41
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 1e-40
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 9e-40
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 2e-35
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 2e-21
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 4e-20
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 3e-18
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 4e-18
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 9e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Length = 163 Back     alignment and structure
 Score =  161 bits (408), Expect = 1e-48
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 28  SEGMSQMSFKMKELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIR 87
           S G S M           NP E+ VE AT+E     DW++ +D+CD + +    + D ++
Sbjct: 2   SSGSSGMPL------FTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLK 55

Query: 88  GIKKRIMLKSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNNRN 146
            I KR+  K P +   AL LL   V NC K F  EV +     E+  +I   +       
Sbjct: 56  AIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVI-KNKAHPKVCE 114

Query: 147 KALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAP 192
           K   ++  W E   +     +   T KS++  GI FP   +++  P
Sbjct: 115 KLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQTSGP 160
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Length = 157 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Length = 152 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Length = 111 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 158 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Length = 103 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Length = 140 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 100.0
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 100.0
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 100.0
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 100.0
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 100.0
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 100.0
3g2s_A149 C-terminal fragment of sortilin-related receptor; 100.0
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 100.0
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 100.0
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 99.82
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 99.81
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 99.8
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 99.78
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 99.77
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 97.99
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 97.97
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 97.8
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 97.72
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 97.68
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 97.45
2pjw_V91 Vacuolar protein sorting-associated protein 27; GA 97.15
2pjw_H88 Uncharacterized protein YHL002W; GAT domain, core 96.57
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 95.89
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 95.69
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 95.48
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 95.21
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 94.76
4fu3_A135 Regulation of nuclear PRE-mRNA domain-containing 1 92.32
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 91.96
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 90.05
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 88.63
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 88.25
3f1i_H98 Hepatocyte growth factor-regulated tyrosine kinas 87.53
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 87.32
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 85.59
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 83.13
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 82.14
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
Probab=100.00  E-value=7.1e-45  Score=326.68  Aligned_cols=149  Identities=30%  Similarity=0.492  Sum_probs=141.3

Q ss_pred             HhhcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch
Q 016112           39 KELFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKA  118 (395)
Q Consensus        39 ~~~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~  118 (395)
                      |+||+ ++|++.+|++||++.+.++||++|++|||+||+++++|++|+|+|+|||+|+||++|++||+|||+||+|||++
T Consensus         8 M~~~~-~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~   86 (163)
T 1x5b_A            8 MPLFT-ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKI   86 (163)
T ss_dssp             CCCCC-CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH
T ss_pred             CCCcC-CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence            45787 68999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hH-HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCCCCCCCCCC
Q 016112          119 FS-EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNES  189 (395)
Q Consensus       119 F~-eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~FP~~~~~s  189 (395)
                      || +|++++|+++|++++. +.+++.||+||+++|+.|+++|+.++++..|.++|+.||++||.||+.+..+
T Consensus        87 Fh~evas~~Fl~el~~l~~-~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~~~  157 (163)
T 1x5b_A           87 FHLEVCSRDFATEVRAVIK-NKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQT  157 (163)
T ss_dssp             HHHHHTSHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTTTCCCCCCSSCC
T ss_pred             HHHHHhhHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCCCCCCCCCCC
Confidence            98 9999999999999997 4467899999999999999999999999999999999999999999987543
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Back     alignment and structure
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 395
d1elka_153 a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) 1e-44
d1dvpa1145 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel 2e-42
d1juqa_151 a.118.9.2 (A:) ADP-ribosylation factor binding pro 3e-39
d1ujka_145 a.118.9.2 (A:) ADP-ribosylation factor binding pro 4e-39
d1mhqa_143 a.118.9.2 (A:) ADP-ribosylation factor binding pro 5e-38
d1wr6a190 a.7.8.1 (A:211-300) ADP-ribosylation factor bindin 2e-19
d1o3xa_112 a.7.8.1 (A:) ADP-ribosylation factor binding prote 4e-16
d1wrda193 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 9e-16
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 8e-09
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Tom1 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (378), Expect = 1e-44
 Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 7/151 (4%)

Query: 40  ELFQG---PNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-L 95
           +   G    +PV + +E AT  +L+  DWA+N+++CD+IN  +    D +R +KKRI+  
Sbjct: 2   DFLLGNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN 61

Query: 96  KSPRIQYLALVLLETVVKNCEKAF-SEVAAERVLDEMVKLIDDPQTVVNN--RNKALVMI 152
           K+     LAL +LET VKNC   F   VA++  ++ ++     P+        +K L +I
Sbjct: 62  KNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLI 121

Query: 153 EAWGESTSELRYLPVYEETYKSLRSRGIRFP 183
           ++W ++      L      Y+ LR +G+ FP
Sbjct: 122 QSWADAFRSSPDLTGVVTIYEDLRRKGLEFP 152
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 100.0
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 100.0
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 100.0
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 100.0
d1wrda193 Target of Myb protein 1, TOM1 {Human (Homo sapiens 99.81
d1wr6a190 ADP-ribosylation factor binding protein Gga3 {Huma 99.81
d1o3xa_112 ADP-ribosylation factor binding protein Gga1 {Huma 99.79
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 98.86
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 97.75
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.61
d1szaa_144 PCF11 protein {Baker's yeast (Saccharomyces cerevi 97.19
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 83.38
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2.2e-42  Score=302.77  Aligned_cols=143  Identities=27%  Similarity=0.469  Sum_probs=136.0

Q ss_pred             hcCCCChHHHHHHHHcCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhH
Q 016112           41 LFQGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNCEKAFS  120 (395)
Q Consensus        41 ~f~~~s~~~~lIekATs~~l~~~Dw~~ileIcD~Ins~~~~~keA~raIrKrL~~~n~~vq~~AL~LLe~~VkNcG~~F~  120 (395)
                      ||+  |+++.+|++||++.+.+|||++|++|||+||+++.+|++|+|+|+|||+|+||++|++||+|||+||+|||..||
T Consensus         1 ~~~--s~~~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~   78 (145)
T d1dvpa1           1 MFR--SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVH   78 (145)
T ss_dssp             CCC--SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCc--chHHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHH
Confidence            455  689999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -HHhhHHHHHHHHhhhcCCCcccchHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHhhcCCCCCCCC
Q 016112          121 -EVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRD  186 (395)
Q Consensus       121 -eias~~Fl~eLvkli~~~~t~~~Vk~KiL~lI~~W~~~f~~~~~l~~i~~~Y~~Lk~~Gi~FP~~~  186 (395)
                       +|++++|+++|++++.+ .++..||+|++++|+.|+.+|++++.++.|.++|+.||++||.||+.+
T Consensus        79 ~~i~s~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f~~~~~~~~i~~~y~~Lk~~G~~FP~l~  144 (145)
T d1dvpa1          79 EEVFTKENCEMFSSFLES-TPHENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELR  144 (145)
T ss_dssp             HHHSSHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHhhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHCCCCCcCCC
Confidence             99999999999999964 456789999999999999999999999999999999999999999864
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure