Citrus Sinensis ID: 016142

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
ccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccEEEEEccccccccccHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHEEcccEEcccccccccccccc
cccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHEEEHHHHHHHHHHccccHHHHHHHHcccHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
mgtqayagsqTLQSIILLCtgtnkdggyfapKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFThfemspeatgisskpYAVILSFLVSQyslygydsaahlteetkgadktgpiaiLSSIGIISIFGWALILALCFSIQDFsylydksnetagafvpaQILYDafhgryhnsTGAIILLIVIWGSfffgglsvtTSAARVVYALSrdkgipfssiwrqlhpkhkvpsnAVWLCAAICIIlglpilkvNVVFTAITSICtigwvggyavPIFARMVMAEQkfnagpfylgkasrpiCLIAFLWICYTCsvfllptfypiswdtfnyapvALGVGLGLIMLWWLLDArkwftgpvrnidnengkv
mgtqayagsqTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKwftgpvrnidnengkv
MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPiailssigiisiFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
**********TLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVR*********
MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT*************
*********QTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGP***********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query394 2.2.26 [Sep-21-2011]
B9EXZ6520 Amino-acid permease BAT1 no no 0.956 0.725 0.423 2e-71
Q9ZU50516 Amino-acid permease BAT1 yes no 0.954 0.728 0.398 3e-68
O60113542 Uncharacterized amino-aci yes no 0.779 0.566 0.300 2e-30
Q9C0Z0543 Uncharacterized amino-aci no no 0.895 0.650 0.284 2e-28
Q10087550 Uncharacterized amino-aci no no 0.928 0.665 0.288 5e-28
O59942541 Amino-acid permease 2 OS= N/A no 0.908 0.661 0.264 2e-23
O59813554 Uncharacterized amino-aci no no 0.652 0.463 0.311 2e-23
Q09887544 Uncharacterized amino-aci no no 0.703 0.509 0.276 2e-22
P32837571 GABA-specific permease OS yes no 0.817 0.563 0.266 3e-22
P19807563 Choline transport protein no no 0.746 0.522 0.254 2e-21
>sp|B9EXZ6|BAT1_ORYSJ Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 161/380 (42%), Positives = 230/380 (60%), Gaps = 3/380 (0%)

Query: 9   SQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQ 68
           +Q +Q IILL TG N  GGY A K++ +  +  + +  A +N+  +  ++F    +  W 
Sbjct: 143 AQLIQVIILLSTGGNNGGGYMASKYVVIAFHAAILLSHAAINSLPITWLSFFGQFAAAWN 202

Query: 69  VAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDS 128
           + G  V++I +P VA    SA +VFTHF     A GI S  Y  +L  L+SQY+L GYD+
Sbjct: 203 MLGVFVLMIAVPTVATERASAKFVFTHFNTENNA-GIHSNFYIFVLGLLMSQYTLTGYDA 261

Query: 129 AAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP 188
           +AH+TEETK AD+ GPI I+S+IGI  I GW  IL + F+++D  YL +  N+ AG +  
Sbjct: 262 SAHMTEETKNADRNGPIGIISAIGISIIVGWGYILGITFAVKDIPYLLNPEND-AGGYAI 320

Query: 189 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR 248
           A++ Y AF  RY +  G II L ++  + +F G+S  TS +R+ YA SRD  +P SS+W 
Sbjct: 321 AEVFYLAFKSRYGSGIGGIICLGIVAVAIYFCGMSSVTSNSRMAYAFSRDGAMPLSSVWH 380

Query: 249 QLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMA 308
           +++ KH+VP NAVWL A I + + LP L   V F A+ SI TIG    YA+PI  R+ +A
Sbjct: 381 KVN-KHEVPINAVWLSALISLCMALPSLGSLVAFQAMVSIATIGLYVAYALPILFRVTLA 439

Query: 309 EQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLI 368
            + F  GPF LG+    +   A LW+     +F LP  YP++ DT NY PVA+G    L+
Sbjct: 440 RKHFVPGPFNLGRCGVAVGWAAVLWVATITVLFSLPVSYPVTKDTLNYTPVAVGGLFLLV 499

Query: 369 MLWWLLDARKWFTGPVRNID 388
           +  WLL AR WF GP+ N+D
Sbjct: 500 LSSWLLSARHWFKGPITNLD 519
May be involved in the transport of amino acids.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9ZU50|BAT1_ARATH Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2 Back     alignment and function description
>sp|O60113|YG64_SCHPO Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=3 SV=1 Back     alignment and function description
>sp|Q9C0Z0|YKM2_SCHPO Uncharacterized amino-acid permease PB24D3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.02c PE=3 SV=1 Back     alignment and function description
>sp|Q10087|YAO8_SCHPO Uncharacterized amino-acid permease C11D3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.08c PE=3 SV=1 Back     alignment and function description
>sp|O59942|AAP2_NEUCR Amino-acid permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=aap-2 PE=2 SV=2 Back     alignment and function description
>sp|O59813|YCT3_SCHPO Uncharacterized amino-acid permease C794.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC794.03 PE=2 SV=1 Back     alignment and function description
>sp|Q09887|YC9D_SCHPO Uncharacterized amino-acid permease C584.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC584.13 PE=3 SV=1 Back     alignment and function description
>sp|P32837|UGA4_YEAST GABA-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA4 PE=1 SV=1 Back     alignment and function description
>sp|P19807|HNM1_YEAST Choline transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNM1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
224093575 538 amino acid transporter [Populus trichoca 1.0 0.732 0.845 0.0
356507445 527 PREDICTED: LOW QUALITY PROTEIN: uncharac 1.0 0.747 0.843 0.0
357464761 528 Amino-acid permease, putative [Medicago 1.0 0.746 0.868 0.0
356518789 542 PREDICTED: LOW QUALITY PROTEIN: uncharac 1.0 0.726 0.833 0.0
296082588 522 unnamed protein product [Vitis vinifera] 1.0 0.754 0.883 0.0
225438400 512 PREDICTED: uncharacterized amino-acid pe 1.0 0.769 0.883 0.0
147773952 512 hypothetical protein VITISV_000645 [Viti 1.0 0.769 0.883 0.0
242073140 525 hypothetical protein SORBIDRAFT_06g01710 0.992 0.744 0.836 0.0
413918355 525 amino acid permease [Zea mays] 1.0 0.750 0.820 0.0
226498468 525 amino acid permease [Zea mays] gi|195616 0.997 0.748 0.819 0.0
>gi|224093575|ref|XP_002309938.1| amino acid transporter [Populus trichocarpa] gi|222852841|gb|EEE90388.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/407 (84%), Positives = 374/407 (91%), Gaps = 13/407 (3%)

Query: 1   MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFI 60
           +GTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLT+IWAVLNTFALEVIAFI
Sbjct: 132 IGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTLIWAVLNTFALEVIAFI 191

Query: 61  DIISMWWQVAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQ 120
           D+IS+WWQV GGLVI+IMLPLV+LTTQSASYVFTHFE +P++TGISSKPY V+LSFLVSQ
Sbjct: 192 DVISIWWQVIGGLVIVIMLPLVSLTTQSASYVFTHFETAPDSTGISSKPYVVVLSFLVSQ 251

Query: 121 YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ---------- 170
           YSLYGYD+AAHLTEETKGADK GPIAILSSIGII++FGWA ILAL FSIQ          
Sbjct: 252 YSLYGYDAAAHLTEETKGADKNGPIAILSSIGIITVFGWAYILALTFSIQVCLASRTTAL 311

Query: 171 ---DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTS 227
              DF YLYD SNETAGAFVPAQILYDAF GRYHNS GAI+LL +IWGSFFFGGLS+TTS
Sbjct: 312 LIPDFGYLYDPSNETAGAFVPAQILYDAFQGRYHNSAGAIVLLFIIWGSFFFGGLSITTS 371

Query: 228 AARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITS 287
           AARVVYALSRD+GIPFSSIWR++HPKHKVPSNAVWLCAAICI+LGLPILKVNVVFTAITS
Sbjct: 372 AARVVYALSRDEGIPFSSIWRKIHPKHKVPSNAVWLCAAICILLGLPILKVNVVFTAITS 431

Query: 288 ICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFY 347
           ICTIGWVGGYAVPIFAR+VM E+ F AGPFYLG+A RP+C+IAFLWICYTCSVFLLPT+Y
Sbjct: 432 ICTIGWVGGYAVPIFARIVMDEKNFKAGPFYLGRARRPVCIIAFLWICYTCSVFLLPTYY 491

Query: 348 PISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV 394
           P+SW+TFNYAPVA+GVGL  IMLWW+LDARKWF GPVRNID  NGKV
Sbjct: 492 PLSWNTFNYAPVAIGVGLSSIMLWWMLDARKWFKGPVRNIDISNGKV 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356507445|ref|XP_003522477.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized amino-acid permease C15C4.04c-like [Glycine max] Back     alignment and taxonomy information
>gi|357464761|ref|XP_003602662.1| Amino-acid permease, putative [Medicago truncatula] gi|358348396|ref|XP_003638233.1| Amino-acid permease, putative [Medicago truncatula] gi|355491710|gb|AES72913.1| Amino-acid permease, putative [Medicago truncatula] gi|355504168|gb|AES85371.1| Amino-acid permease, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|356518789|ref|XP_003528060.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized amino-acid permease C15C4.04c-like [Glycine max] Back     alignment and taxonomy information
>gi|296082588|emb|CBI21593.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225438400|ref|XP_002274762.1| PREDICTED: uncharacterized amino-acid permease C15C4.04c-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147773952|emb|CAN60789.1| hypothetical protein VITISV_000645 [Vitis vinifera] Back     alignment and taxonomy information
>gi|242073140|ref|XP_002446506.1| hypothetical protein SORBIDRAFT_06g017100 [Sorghum bicolor] gi|241937689|gb|EES10834.1| hypothetical protein SORBIDRAFT_06g017100 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|413918355|gb|AFW58287.1| amino acid permease [Zea mays] Back     alignment and taxonomy information
>gi|226498468|ref|NP_001148156.1| amino acid permease [Zea mays] gi|195616234|gb|ACG29947.1| amino acid permease [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
TAIR|locus:2038811516 BAT1 "AT2G01170" [Arabidopsis 0.954 0.728 0.385 4.8e-71
ASPGD|ASPL0000060974530 AN1061 [Emericella nidulans (t 0.926 0.688 0.264 9.5e-34
POMBASE|SPBC15C4.04c542 SPBC15C4.04c "amino acid perme 0.812 0.590 0.294 1.1e-32
POMBASE|SPAC11D3.08c550 SPAC11D3.08c "amino acid perme 0.852 0.610 0.292 8e-32
UNIPROTKB|G4NFY0512 MGG_08670 "Choline transporter 0.885 0.681 0.277 1.2e-31
ASPGD|ASPL0000040382520 gabA [Emericella nidulans (tax 0.873 0.661 0.279 1.2e-30
POMBASE|SPAPB24D3.02c543 SPAPB24D3.02c "amino acid perm 0.873 0.633 0.281 2.2e-30
ASPGD|ASPL0000069282544 AN10905 [Emericella nidulans ( 0.906 0.656 0.289 1.4e-29
ASPGD|ASPL0000007717570 AN5968 [Emericella nidulans (t 0.913 0.631 0.242 1e-28
ASPGD|ASPL0000065674495 AN7392 [Emericella nidulans (t 0.847 0.674 0.257 6.3e-28
TAIR|locus:2038811 BAT1 "AT2G01170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 146/379 (38%), Positives = 221/379 (58%)

Query:     9 SQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQ 68
             +Q +Q I+LL TG    GGY    ++ + ++ G+  I A+LN+  + V++FI  ++  W 
Sbjct:   139 AQLIQVIVLLSTGGRNGGGYKGSDFVVIGIHGGILFIHALLNSLPISVLSFIGQLAALWN 198

Query:    69 VAGGLVIIIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDS 128
             + G LV++I++PLV+    +  +VFT+F  +    GI+S  Y  +L  L+SQY++ GYD+
Sbjct:   199 LLGVLVLMILIPLVSTERATTKFVFTNFN-TDNGLGITSYAYIFVLGLLMSQYTITGYDA 257

Query:   129 AAHLTEETKGADKTGPXXXXXXXXXXXXFGWALILALCFSIQDFSYLYDKSNETAGAFVP 188
             +AH+TEET  ADK GP            FGW  IL + +++ D   L  ++N + G +  
Sbjct:   258 SAHMTEETVDADKNGPRGIISAIGISILFGWGYILGISYAVTDIPSLLSETNNSGG-YAI 316

Query:   189 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR 248
             A+I Y AF  R+ + TG I+ L V+  + FF G+S  TS +R+ YA SRD  +P S +W 
Sbjct:   317 AEIFYLAFKNRFGSGTGGIVCLGVVAVAVFFCGMSSVTSNSRMAYAFSRDGAMPMSPLWH 376

Query:   249 QLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMA 308
             +++ + +VP NAVWL A I   + L  L   V F A+ SI TIG    YA+PI  R+ +A
Sbjct:   377 KVNSR-EVPINAVWLSALISFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRVTLA 435

Query:   309 EQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLI 368
                F  GPF LGK    +  +A LW+     +F LP  YPI+ +T NY PVA+   + + 
Sbjct:   436 RNTFVPGPFSLGKYGMVVGWVAVLWVVTISVLFSLPVAYPITAETLNYTPVAVAGLVAIT 495

Query:   369 MLWWLLDARKWFTGPVRNI 387
             + +WL  AR WFTGP+ NI
Sbjct:   496 LSYWLFSARHWFTGPISNI 514
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IDA
GO:0015180 "L-alanine transmembrane transporter activity" evidence=IDA
GO:0015181 "arginine transmembrane transporter activity" evidence=IDA
GO:0015189 "L-lysine transmembrane transporter activity" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IMP
GO:0015812 "gamma-aminobutyric acid transport" evidence=IMP
ASPGD|ASPL0000060974 AN1061 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPBC15C4.04c SPBC15C4.04c "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPAC11D3.08c SPAC11D3.08c "amino acid permease, unknown 1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|G4NFY0 MGG_08670 "Choline transporter" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000040382 gabA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAPB24D3.02c SPAPB24D3.02c "amino acid permease, unknown 3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000069282 AN10905 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007717 AN5968 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000065674 AN7392 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00070456
amino acid transporter (538 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 6e-75
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 3e-28
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 3e-22
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 1e-15
pfam00324473 pfam00324, AA_permease, Amino acid permease 3e-06
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 3e-04
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information 
 Score =  240 bits (614), Expect = 6e-75
 Identities = 119/380 (31%), Positives = 192/380 (50%), Gaps = 16/380 (4%)

Query: 6   YAGSQTLQSIILLCTGTNKDGGYFAPK-WLFLCMYIGLTIIWAVLNTFALEVIAFIDIIS 64
            + +Q +  I+ L T     G  + P  W    + IG+ +I A++N+   + +  I   +
Sbjct: 117 LSVAQLILGIVSLTT----PGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSSA 172

Query: 65  MWWQVAGGLVI-IIMLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSL 123
            +W + G L I I +L   +       +VFT+F       G     +A +L  L   +S+
Sbjct: 173 AYWSLLGFLTICITLLACKSPKFNDGKFVFTNFN--NSTGGWKPGGFAFLLGLLNPAWSM 230

Query: 124 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETA 183
            GYD  AH+ EE +  +  GP AI+ ++ I  + G+   + L FS+ D   L    + T 
Sbjct: 231 TGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLI---SSTT 287

Query: 184 GAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPF 243
           G  + AQI Y+A      N  GAI LL +I  + FF  ++  T+ +R++YA SRD G+PF
Sbjct: 288 GQPI-AQIFYNALG----NKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPF 342

Query: 244 SSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFA 303
           S +W +++P+ +VP NAVWL A   I++GL  L  +  F AI S+CT+     Y +PI  
Sbjct: 343 SPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIIC 402

Query: 304 RMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGV 363
           ++         GPF+LGK    +  +A  W  ++  +F  P   P++ +  NYA V    
Sbjct: 403 KLAKGRNTIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAG 462

Query: 364 GLGLIMLWWLLDARKWFTGP 383
            L + +++W    RK FTGP
Sbjct: 463 VLAISLVYWKYKGRKEFTGP 482

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 394
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
PRK11021410 putative transporter; Provisional 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.97
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.97
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.77
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.74
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.73
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.58
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.28
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.09
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.05
TIGR00814397 stp serine transporter. The HAAAP family includes 98.85
PRK15132403 tyrosine transporter TyrP; Provisional 98.76
PRK10483414 tryptophan permease; Provisional 98.74
PRK09664415 tryptophan permease TnaB; Provisional 98.65
COG0814415 SdaC Amino acid permeases [Amino acid transport an 98.44
PRK13629443 threonine/serine transporter TdcC; Provisional 98.32
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.08
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 98.08
PHA02764399 hypothetical protein; Provisional 97.88
KOG1303437 consensus Amino acid transporters [Amino acid tran 97.64
PRK11375484 allantoin permease; Provisional 97.54
PF03845320 Spore_permease: Spore germination protein; InterPr 97.53
KOG1304449 consensus Amino acid transporters [Amino acid tran 97.5
PRK15433439 branched-chain amino acid transport system 2 carri 97.29
PLN03074473 auxin influx permease; Provisional 96.92
COG3949349 Uncharacterized membrane protein [Function unknown 96.83
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.76
COG1457442 CodB Purine-cytosine permease and related proteins 96.64
PTZ00206467 amino acid transporter; Provisional 96.63
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 96.41
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 96.37
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 96.18
COG0733439 Na+-dependent transporters of the SNF family [Gene 95.88
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 95.68
PLN00149 779 potassium transporter; Provisional 95.37
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 95.29
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 95.28
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.27
PLN00150 779 potassium ion transporter family protein; Provisio 95.2
PRK09442483 panF sodium/panthothenate symporter; Provisional 95.19
PLN00148 785 potassium transporter; Provisional 95.12
PLN00151 852 potassium transporter; Provisional 95.02
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 94.48
PF1390651 AA_permease_C: C-terminus of AA_permease 94.23
TIGR00813407 sss transporter, SSS family. have different number 94.22
PRK10745 622 trkD potassium transport protein Kup; Provisional 94.1
KOG1305411 consensus Amino acid transporter protein [Amino ac 93.7
COG4858226 Uncharacterized membrane-bound protein conserved i 93.27
PRK00701439 manganese transport protein MntH; Reviewed 93.03
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 92.96
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 91.73
PF06570206 DUF1129: Protein of unknown function (DUF1129); In 90.79
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 90.45
PRK12488549 acetate permease; Provisional 89.61
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 89.31
PRK11017404 codB cytosine permease; Provisional 88.81
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 88.36
PRK10484523 putative transporter; Provisional 86.21
PRK09950506 putative transporter; Provisional 86.0
TIGR00835425 agcS amino acid carrier protein. Members of the AG 85.61
PRK15238496 inner membrane transporter YjeM; Provisional 85.27
PRK09395551 actP acetate permease; Provisional 84.72
KOG3659629 consensus Sodium-neurotransmitter symporter [Signa 83.45
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 82.73
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 82.04
PRK15419502 proline:sodium symporter PutP; Provisional 81.27
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-51  Score=387.57  Aligned_cols=373  Identities=34%  Similarity=0.630  Sum_probs=346.9

Q ss_pred             CcchhhhHHHHHHHHHHHhccCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016142            1 MGTQAYAGSQTLQSIILLCTGTNKDGGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLP   80 (394)
Q Consensus         1 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~l~~~~i~~~   80 (394)
                      .||++|..++++++++.+.|     |+|+.+.|+.+.+..++..+..++|+.+.|...+++.+...+.++.+++..|...
T Consensus       148 ~aSi~~S~A~~i~~~v~l~n-----p~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~ll  222 (550)
T KOG1289|consen  148 VASITYSLAQLILGAVSLTN-----PNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLL  222 (550)
T ss_pred             chhhhHHHHHHHHHHHhhcC-----CCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            48999999999999999998     9999999999999999999999999999999999999999999999999988887


Q ss_pred             hccccc---ccccccccceeecCCCCCCCCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHH
Q 016142           81 LVALTT---QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIF  157 (394)
Q Consensus        81 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~  157 (394)
                      +..+++   ++.+..|+++ +  |.++|++.|++++.++....|.+.|+|+++|++||+|||+|+.||||+.++.+..++
T Consensus       223 a~~~~k~gFns~~~iF~~f-~--N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~  299 (550)
T KOG1289|consen  223 AASSKKTGFNSGSFIFGKF-N--NYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFIL  299 (550)
T ss_pred             hccCCCCCCCCCceeeecc-c--ccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHH
Confidence            765543   4566778888 7  899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc-ChhhhhcCCCCccCCCcHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 016142          158 GWALILALCFSIQ-DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS  236 (394)
Q Consensus       158 y~l~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a  236 (394)
                      .....+.+..++| +.+.+.+++.    ++|+++.+.+.+|+.     +..++..+.+++.+.+..+.+.+.||+.|+.+
T Consensus       300 gw~~~I~i~~~i~~D~~~v~ns~~----g~p~~~i~~~~lg~k-----~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afa  370 (550)
T KOG1289|consen  300 GWIIIIGIAYTIPDDLDAVLNSSL----GQPIVQIYYQALGKK-----GAVFLLSLIIIALFFMGISSLTASSRLVYAFA  370 (550)
T ss_pred             HHHHHHHHHHhccchHHHHhcCCC----CChHHHHHHHhcCCC-----ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence            9999999999997 5667777666    799999999998554     45777888889999999999999999999999


Q ss_pred             cCCCCCcccccccccccCCChHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcCCC
Q 016142          237 RDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGP  316 (394)
Q Consensus       237 ~d~~lP~~~~f~~~~~~~~~P~~al~~~~~ls~i~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  316 (394)
                      |||.+|+|++++|+||++++|.+|+++..++++++.++.+++..+++.+++.+.+..+++|.++..+.+...|++.++.|
T Consensus       371 RDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp  450 (550)
T KOG1289|consen  371 RDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGP  450 (550)
T ss_pred             ccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888777889999


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHHhhhccceeeeCCccccCCC
Q 016142          317 FYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNE  390 (394)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (394)
                      |+++|++.+.+++++.|.+++.+++++|...|++.++|||+.++.+..+++..++|+..+||++++|+...+|+
T Consensus       451 ~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~~~k~f~gP~~~~~~~  524 (550)
T KOG1289|consen  451 FNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVSARKWFKGPIPSVLEE  524 (550)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeeecceeecCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998766555

>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 7e-13
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 3e-08
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 9e-06
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
 Score = 68.7 bits (168), Expect = 7e-13
 Identities = 43/349 (12%), Positives = 114/349 (32%), Gaps = 19/349 (5%)

Query: 27  GYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAGGLVIIIMLPLVALTT 86
                        + +    A+      +  A I  +  +  +     I+I L  + L +
Sbjct: 122 ALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHS 181

Query: 87  QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIA 146
            +        EM  +           ++ F+    S  G +++A    E     +  P+A
Sbjct: 182 GAPV----AIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237

Query: 147 ILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGA 206
           +L  +           L++   I       ++ N +AG      +L          +   
Sbjct: 238 MLLLMVAAICLSSVGGLSIAMVIP-----GNEINLSAGVMQTFTVLMSHVAPEIEWTVRV 292

Query: 207 IILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 266
           I  L+++         S     +R +Y  ++   +P  + + +++ K+ VP   V     
Sbjct: 293 ISALLLL--GVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMN-KNGVPVTLVISQLV 347

Query: 267 ICIILGLPIL----KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAG-PFYLGK 321
           I  I  + +       N+ F    ++  + ++  Y +     +V+  +  +    F +  
Sbjct: 348 ITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPG 407

Query: 322 ASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIML 370
                 ++A + +  +   F++    P +    +       + +  +++
Sbjct: 408 GKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVV 456
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 97.51
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.17
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 96.0
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 93.21
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
Probab=100.00  E-value=2.9e-39  Score=322.28  Aligned_cols=330  Identities=13%  Similarity=0.073  Sum_probs=254.0

Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHhhhhhccccccccc--ccccceeecCCC
Q 016142           26 GGYFAPKWLFLCMYIGLTIIWAVLNTFALEVIAFIDIISMWWQVAG-GLVIIIMLPLVALTTQSAS--YVFTHFEMSPEA  102 (394)
Q Consensus        26 ~~~~~~~~~~~~i~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~-l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~  102 (394)
                      |++..++|+..+++++++++.+.+|++|+|..+++|.+.+.++++. ++++++.++.....+++.+  ...+++ .  ++
T Consensus       121 p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~--~~  197 (511)
T 4djk_A          121 PALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTF-F--PD  197 (511)
T ss_dssp             GGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CC-C--CC
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccc-C--CC
Confidence            6777788999999999999999999999999999999998886554 5555555554322222111  111222 1  11


Q ss_pred             CCCCCchHHHHHHHHHhhHHhhcccchhhhhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCCCc
Q 016142          103 TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET  182 (394)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~k~p~k~ip~a~~~s~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~  182 (394)
                      ...    .+.+.++...+|+|.|+|.+++++||+|||+|++|||+..+..+++++|++..++..... +.++...+    
T Consensus       198 ~~~----~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~----  268 (511)
T 4djk_A          198 FSK----VGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVI-PGNEINLS----  268 (511)
T ss_dssp             TTS----TTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTS-CTTSCCSS----
T ss_pred             ccc----chHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeec-CHhhcccc----
Confidence            100    123345667789999999999999999999999999999999999999999999999988 55554332    


Q ss_pred             cCCCcHHHHHHHHhccccC--CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCcccccccccccCCChHHH
Q 016142          183 AGAFVPAQILYDAFHGRYH--NSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNA  260 (394)
Q Consensus       183 ~~~~p~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d~~lP~~~~f~~~~~~~~~P~~a  260 (394)
                         .+..+.+...++.. |  .++...++.+..+++.+++.++.+.+.+|++++|||||.+|  ++|+|+| |+++|+++
T Consensus       269 ---~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~a  341 (511)
T 4djk_A          269 ---AGVMQTFTVLMSHV-APEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMN-KNGVPVTL  341 (511)
T ss_dssp             ---STHHHHHHHHHSSS-CSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCS--SSCCCCC-SSSCCCHH
T ss_pred             ---chHHHHHHHHHHHh-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc--HHHHhcC-CCCCcHHH
Confidence               23455555555544 6  56788899999999999999999999999999999999999  9999999 57999999


Q ss_pred             HHHHHHHHHHHhhhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCcCCCcccc--cch-hHHHHHHH
Q 016142          261 VWLCAAICIILGLPILKV-----NVVFTAITSICTIGWVGGYAVPIFA-RMVMAEQKFNAGPFYLG--KAS-RPICLIAF  331 (394)
Q Consensus       261 l~~~~~ls~i~~l~~~~~-----~~~~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~  331 (394)
                      ++++..+..+..+ ..++     .+.++.+.++.++..+++|.+++.. .++|+|+++.+||||.+  +++ +.+++++.
T Consensus       342 i~~~~~~~~l~~~-~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (511)
T 4djk_A          342 VISQLVITSIALI-ILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGL  420 (511)
T ss_dssp             HHHHHHHHHHHHH-HHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHH
Confidence            9998554443322 2233     5679999999999999999988774 45555666778999997  444 56788889


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCccchHHHHHHHHHHHHHHhhhc
Q 016142          332 LWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLD  375 (394)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (394)
                      +++++..+..++|...+.+.+.++|.....+.++++..++|+.+
T Consensus       421 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  464 (511)
T 4djk_A          421 LTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFILY  464 (511)
T ss_dssp             HHHHHHHHHTTCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHeeeeCCccccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888889998877777777777777663
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 96.7
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.70  E-value=0.11  Score=48.46  Aligned_cols=43  Identities=14%  Similarity=0.143  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHhhHHhh-cccchhhhhhhhcchhhchhHHHHHHHH
Q 016142          109 PYAVILSFLVSQYSLY-GYDSAAHLTEETKGADKTGPIAILSSIG  152 (394)
Q Consensus       109 ~~~~~~~~~~~~~af~-G~e~~~~~~~E~k~p~k~ip~a~~~s~~  152 (394)
                      ......+...+++++. |+.....++.-.|+ +.|+.|--.....
T Consensus       237 ~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~~v~~  280 (509)
T d2a65a1         237 PGVWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAAT  280 (509)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccceEEEe
Confidence            3456778888999985 88888888777765 5567765444333